#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 02, 2024; 19:03 GMT

TreeBASE (cc) 1994-2008

Study reference:
Moriwaki J., & Tsukiboshi T. 2009. Colletotrichum echinochloae, a new species on
Japanese barnyard millet (Echinochloa utilis). Mycoscience, 50: 273-280.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S10094]

BEGIN TAXA;
        TITLE  M4620;
        DIMENSIONS NTAX=15;
        TAXLABELS
            Colletotrichum_caudatum_MAFF238574
            Colletotrichum_cereale_NJ4990
            Colletotrichum_cereale_NJ6795
            Colletotrichum_echinochloae_MAFF511152
            Colletotrichum_echinochloae_MAFF511328
            Colletotrichum_echinochloae_MAFF511471
            Colletotrichum_echinochloae_MAFF511472
            Colletotrichum_echinochloae_MAFF511473
            Colletotrichum_falcatum_MAFF306170
            Colletotrichum_gloeosporioides_MAFF239930
            Colletotrichum_gloeosporioides_MAFF239933
            Colletotrichum_graminicola_ATCC26416
            Colletotrichum_graminicola_MO100178
            Colletotrichum_sublineolum_MAFF511474
            Colletotrichum_sublineolum_S3001
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M4509]

	TITLE SOD2;
	LINK TAXA = M4620;
	DIMENSIONS NCHAR=395;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                                     10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390     ]
[                                                      .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .     ]
Colletotrichum_caudatum_MAFF238574            CACCAAGCATACGTTACAAACCTGAACAAGGCCATCGAGACTTACAATGCCAACCCCCTCCAAAACCGCATCGCCGTCCTCGCGGCCCTCAACTTTAACGGCGGCGGCCACATCAACCACTCTCTCTTCTGGGAGAACCTGTCCCCAGCCTCGAGCGCAGATGCATCACCCAGTGCGGCACCCAAGCTCGTCGCTGAGATCACCCGCATATGGGGCGGGCTCGACCAGTTCAAGCAGGCTTTCAACGCCACGCTGCTGGGTATCACCGGTAGCGGCTGGGGTTGGCTGGTCAAGGACGACGTGACGGGCCTCAGCATCGTCACGACGAAAGACCAGGACCCTGTCACCAAGGGCGTGCCCATCTTTGGTGTCGACATGTGGGAGCACGCGTACTA
Colletotrichum_cereale_NJ4990                 CACGAAGCATACGTTACAAATCTAAACAAGGCCGTCGAGACCTACAACGCGAACCCCCTCCAGAACCGCATCGCCGTCCTCCCAGCCCTCAACTTCAACGGCGGCGGCCACATCAACCACTCCCTCTTCTGGGAAAACCTGTCCCCTGCCTCGAGCCCAGACGCCTCGCCAGACGCCGCGCCGAAGCTCGTCGCTGAGATCGCCCGGGTCTGGGGCGGGCTCGACCAGTTCAAGCAGGCTTTCAACGCCACGCTTCTGGGTATCACCGGCAGCGGCTGGGGATGGCTGGTCAAGGACGACGTAACGGGTCTGAGCATCATCACGACGAAAGACCAGGACCCTGTCACCAAGGGCGTGCCCATCTTCGGCGTGGACATGTGGGAGCACGCGTACTA
Colletotrichum_cereale_NJ6795                 CACCAAGCATATGTTACAAATTTGAACAAGGCCGTCGAGACCTACAACGCGAACCCCCTTCAAAACCGCATCGCCGTCCTCGCAGCCCTCAACTTCAACGGTGGCGGCCACATCAACCACACCCTCTTCTGGGAGAACCTGAGCCCAGCCTCGAGCCCAGACGCCTCGCCCGACGCCGCGCCCAAGCTCGTCGCTGAGATCACCCGGGTCTGGGGCGGGCTCGACCAGTTCAAGCAGGCTTTCAACGCCACGCTGCTGGGTATCACCGGCAGCGGCTGGGGGTGGCTGGTCAAGGACGACGTAACGGGTCTCAGCATCATCACGACGAAAGACCAGGACCCTGTCACCAAGGGCGTGCCCATCTTCGGCGTGGACATGTGGGAGCACGCGTACTA
Colletotrichum_echinochloae_MAFF511152        CACCAAGCATACGTTACAAATTTGAACAAGGCCGTCGAGACCTACAACGCAAACCCCCTCCAGAACCGCATCGCCGTCCTCGCAGCCCTCAACTTCAACGGCGGCGGCCACATCAACCACTCCCTCTTCTGGGAGAACCTGTGCCCGGCCTCGAGCGCAGATGCCTCGCCCGACGCGGCGCCCAAGCTCATTGCCGAGATCACCCGTGTCTGGGGCGGGCTGGAGCAGTTCAAGCAGGCCTTCAACGCCACGCTGCTGGGTATCACCGGCAGCGGCTGGGGATGGCTGGTCAGAGACGAAGTGACGGGTCTCGGCATCGTCACCACAAAGGACCAGGACCCCGTCACCAAGGGCGTGCCCATCTTTGGCGTCGACATGTGGGAGCACGCGTACTA
Colletotrichum_echinochloae_MAFF511328        CACCAAGCATACGTTACAAATTTGAACAAGGCCGTCGAGACCTACAACGCAAACCCCCTCCAGAACCGCATCGCCGTCCTCGCAGCCCTCAACTTCAACGGCGGCGGCCATATCAACCACTCCCTCTTCTGGGAGAACCTGTGCCCGGCCTCGAGCGCAGATGCCTCGCCCGACGCGGCGCCCAAGCTCATTGCCGAGATCACCCGTGTCTGGGGCGGGCTGGAGCAGTTCAAGCAGGCCTTCAACGCCACGCTGCTGGGTATCACCGGCAGCGGCTGGGGATGGCTGGTCAGAGACGAAGTGACGGGTCTCGGCATCGTCACCACAAAGGACCAGGACCCCGTCACCAAGGGCGTGCCCATCTTTGGCGTCGACATGTGGGAGCACGCGTACTA
Colletotrichum_echinochloae_MAFF511471        CACCAAGCATACGTTACAAATTTGAACAAGGCCGTCGAGACCTACAACGCAAACCCCCTCCAGAACCGCATCGCCGTCCTCGCAGCCCTCAACTTCAACGGCGGCGGCCATATCAACCACTCCCTCTTCTGGGAGAACCTGTGCCCGGCCTCGAGCGCAGATGCCTCGCCCGACGCGGCGCCCAAGCTCATTGCCGAGATCACCCGTGTCTGGGGCGGGCTGGAGCAGTTCAAGCAGGCCTTCAACGCCACGCTGCTGGGTATCACCGGCAGCGGCTGGGGATGGCTGGTCAGAGACGAAGTGACGGGTCTCGGCATCGTCACCACAAAGGACCAGGACCCCGTCACCAAGGGCGTGCCCATCTTTGGCGTCGACATGTGGGAGCACGCGTACTA
Colletotrichum_echinochloae_MAFF511472        CACCAAGCATACGTTACAAATTTGAACAAGGCCGTCGAGACCTACAACGCAAACCCCCTCCAGAACCGCATCGCCGTCCTCGCAGCCCTCAACTTCAACGGCGGCGGCCATATCAACCACTCCCTCTTCTGGGAGAACCTGTGCCCGGCCTCGAGCGCAGATGCCTCGCCCGACGCGGCGCCCAAGCTCATTGCCGAGATCACCCGTGTCTGGGGCGGGCTGGAGCAGTTCAAGCAGGCCTTCAACGCCACGCTGCTGGGTATCACCGGCAGCGGCTGGGGATGGCTGGTCAGAGACGAAGTGACGGGTCTCGGCATCGTCACCACAAAGGACCAGGACCCCGTCACCAAGGGCGTGCCCATCTTTGGCGTCGACATGTGGGAGCACGCGTACTA
Colletotrichum_echinochloae_MAFF511473        CACCAAGCATACGTTACAAATTTGAACAAGGCCGTCGAGACCTACAACGCAAACCCCCTCCAGAACCGCATCGCCGTCCTCGCAGCCCTCAACTTCAACGGCGGCGGCCATATCAACCACTCCCTCTTCTGGGAGAACCTGTGCCCGGCCTCGAGCGCAGATGCCTCGCCCGACGCGGCGCCCAAGCTCATTGCCGAGATCACCCGTGTCTGGGGCGGGCTGGAGCAGTTCAAGCAGGCCTTCAACGCCACGCTGCTGGGTATCACCGGCAGCGGCTGGGGATGGCTGGTCAGAGACGAAGTGACGGGTCTCGGCATCGTCACCACAAAGGACCAGGACCCCGTCACCAAGGGCGTGCCCATCTTTGGCGTCGACATGTGGGAGCACGCGTACTA
Colletotrichum_falcatum_MAFF306170            CACCAGGCATACGTTACGAATCTGAACAAGGCCGTCGAGGCTTACAGCGCGAACCCCCTCCAGAACCGCATCGCCGTCCTCGCGGCCCTCAACTTCAACGGCGGCGGCCACATCAACCACTCCCTCTTCTGGGAGAACCTCTCGCCGGCCTCGAGCCCGGACGCCTCGCCCGACGCGGCACCCGCGCTCGTCGCCGAGATCACCCGCGTCTGGGGCGGGCTCGACCGGTTCAAGCAGGCCTTCAACGCCGCGCTGCTGGGCATCACCGGCAGCGGCTGGGGCTGGCTGGTCAGGCACGACGCCACGGGCCTCGCCATCGTCACGACCAAAGACCAGGACCCCGTCACCAAGGGCGTGCCCGTCTTCGGGGTCGACATGTGGGAGCACGCCTACTA
Colletotrichum_gloeosporioides_MAFF239930     CACCAGACCTACGTCACAAACCTAAACAAGGCTATCGAAACATACAACGCCAACCCTCTCCAAAGCCGCATCGCCGTTTTGGCAGCACTCAACTTCCACGGCGGAGGCCACATCAACCACTCCCTCTTCTGGGAGAACCTCTCTCCCGCTTCTAGCCCGGATGCTTCTCCCGACTCCGCACCCAGCCTGATCGCCGAGGTCACCCGCGTCTGGGGCGGCCTCGACAAGTTCAAGCAAGCTTTCAACGCTGCGCTGTTGGGCATCACCGGCAGCGGCTGGGGCTGGCTGGTCAAAGACGACACGACAGGTCTCAGCATCATCACGACCAAGGACCAGGACCCCGTCACCAAGGGCGTGCCTATCTTCGGTGTCGACATGTCCGAGCACGCGTACTA
Colletotrichum_gloeosporioides_MAFF239933     CACCAGACCTACGTCACAAACCTAAACAAGGCTATCGAAACATACAACGCCAACCCTCTCCAAAGCCGCATCGCCGTTTTGGCAGCACTCAACTTCCACGGCGGAGGCCACATCAACCACTCCCTCTTCTGGGAGAACCTCTCTCCCGCTTCTAGCCCGGATGCTTCTCCCGACTCCGCACCCAGCCTGATCGCCGAGGTCACCCGCGTCTGGGGCGGCCTCGACAAGTTCAAGCAAGCTTTCAACGCTGCGCTGTTGGGCATCACCGGCAGCGGCTGGGGCTGGCTGGTCAAAGACGACACGACAGGTCTCAGCATCATCACGACCAAGGACCAGGACCCCGTCACCAAGGGCGTGCCTATCTTCGGTGTCGACATGTCCGAGCACGCGTACTA
Colletotrichum_graminicola_ATCC26416          CATCAAGCATACGTTACAAATCTGAACAAGGCCATCGAGACTTACAATGCAAACCCGCTCCAGAATCGCATCGCCGTCCTCGCGGCCCTAAACTTCAACGGCGGCGGCCACATCAACCATTCCCTATTCTGGGAGAACCTTTCCCCAGCCTCGAGCGGTGATGCCTCGCCCGATGCGGCGCCAAAGCTCGTCGCCGAGATCACCCGCGTCTGGGGCGGGCTCGACCAGTTCAAGCAGGCTTTCAACACCACGCTGCTGGGTATCACCGGTAGCGGCTGGGGGTGGCTTGTTAAGGATGACATAACGGGCCTCAGCATTATCACGACGAAAGACCAGGACCCTGTCACCAAGGGCGTGCCCATCTTTGGTATTGACATGTGGGAGCACGCGTACTA
Colletotrichum_graminicola_MO100178           CATCAAGCATACGTTACAAATCTGAACAAGGCCATCGAGACTTACAATGCAAACCCGCTCCAGAATCGCATCGCCGTCCTCGCGGCCCTAAACTTCAACGGCGGCGGCCACATCAACCATTCCCTATTCTGGGAGAACCTTTCCCCAGCCTCGAGCGGTGATGCCTCGCCCGATGCGGCGCCAAAGCTCGTCGCCGAGATCACCCGCGTCTGGGGCGGGCTCGACCAGTTCAAGCAGGCTTTCAACACCACGCTGCTGGGTATCACCGGTAGCGGCTGGGGGTGGCTTGTTAAGGATGACATAACGGGCCTCAGCATTATCACGACGAAAGACCAGGACCCTGTCACCAAGGGCGTGCCCATCTTTGGTATTGACATGTGGGAGCACGCGTACTA
Colletotrichum_sublineolum_MAFF511474         CACCAAGCATACGTTACAAATCTGAACAAAGCCATCGAGGCTTACAATGCAAACCCCCTCCAAAACCGCATCGCCGTCCTTGCGGCCCTCAACTTCAATGGAGGCGGCCACATCAACCACTCCCTCTTCTGGGAGAACCTGTCCCCAGCCTCGAGCCCAGATGCCTCGCCCGATGCGGCGCCCAAGCTCGTCGCTGAGATCACCCGCGTCTGGGGCGGGCTCGACCAGTTCAAGCAGGCTTTCAACGCCACACTGCTGGGTATCACCGGCAGCGGCTGGGGATGGCTGGTCAAGGACGACGTAACGGGCCTCAGCATCATCACGACGAAAGACCAAGACCCTGTCACCAAGGGCGTGCCCATTTTTGGTGTCGACATGTGGGAACACGCGTACTA
Colletotrichum_sublineolum_S3001              CACCAAGCATACGTTACAAATCTGAACAAAGCCATCGAGGCTTACAATGCAAACCCCCTCCAAAACCGCATCGCCGTCCTTGCGGCCCTCAACTTCAATGGAGGCGGCCACATCAACCACTCCCTCTTCTGGGAGAACCTGTCCCCAGCCTCGAGCCCAGATGCCTCGCCCGATGCGGCGCCCAAGCTCGTCGCTGAGATCACCCGCGTCTGGGGCGGGCTCGACCAGTTCAAGCAGGCTTTCAACGCCACACTGCTGGGTATCACCGGCAGCGGCTGGGGATGGCTGGTCAAGGACGACGTAACGGGCCTCAGCATCATCACGACGAAAGACCAAGACCCTGTCACCAAGGGCGTGCCCATTTTTGGTGTCGACATGTGGGAACACGCGTACTA
;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions (CHARACTERS = SOD2) = 
		N: 1-395;
CODONPOSSET  CodonPositions (CHARACTERS = SOD2) = 
		N: 1-395;
END;