#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 17, 2024; 9:47 GMT

TreeBASE (cc) 1994-2008

Study reference:
Lee J., & Lim Y. 2009. Cerrena aurantiopora sp. nov. (Polyporaceae) from East Asia.
Mycologia, 102(1): 211-216.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S10059]

BEGIN TAXA;
        TITLE  M4543;
        DIMENSIONS NTAX=11;
        TAXLABELS
            Cerrena_aurantiopora_FJ821546
            Cerrena_aurantiopora_FJ821547
            Cerrena_consors_FJ821542
            Cerrena_consors_FJ821543
            Cerrena_consors_FJ821544
            Cerrena_consors_FJ821545
            Cerrena_unicolor_FJ821538
            Cerrena_unicolor_FJ821539
            Cerrena_unicolor_FJ821540
            Cerrena_unicolor_FJ821541
            Spongipellis_pachyodon_DQ408123
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M4585]

	TITLE 'Fig 2(D)';
	LINK TAXA = M4543;
	DIMENSIONS NCHAR=594;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                           10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680 ]
[                                            .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         . ]
Cerrena_aurantiopora_FJ821546       ATCGATACACATATGCTTCTACATTGTCTCATTTGCGACGATGTAACACTCCTCTTGGTCGTGAGGGTAAAATCGCAAAACCTCGACAATTGCACAATACACATTGGGGCATGGTATGTCCTGCCGAGACACCGGAAGGACAGGCTTGCGGTCTCGTCAAGAACCTTTCCCTCATGTCGTGTATATCCGTCGGTTCGTTCTCCGGACCTGTCATCGAGTTCTTGGAGGAATGGGGGTTGGAGTCTTTGGAAGAAAATGCGCACTCGGCGACGCCTTGTACCAAGGTCTTCGTCAATGGTGTGTGGATGGGTGTACATCGTGACCCAGCCAATCTCGTGAAGACGATCAAGAAGCTTCGGCGGAAGGACGACATCAGTCCCGAAGTTTCAGTTGTTCGGGATATTCGTGAACGAGAACTACGTGTATACACTGATGCAGGTCGTGTATGTCGACCGCTGTTCATCGTCGAAGACCAGCAGTTACTCTTCAAGAAGAAGCACCTTCGATGGCTTGAGAATGTCAAGGACGACCAAGACAGACCATTCGAGTGGGATGACATTGTTCGAAAGGGATACGTCGAGCTGTTGGATGCAG
Cerrena_aurantiopora_FJ821547       ATCGATACACATATGCTTCTACATTGTCTCATTTGCGACGATGTAACACTCCTCTTGGTCGTGAGGGTAAAATCGCAAAACCTCGACAATTGCACAATACACATTGGGGCATGGTATGTCCTGCCGAGACACCGGAAGGACAGGCTTGCGGTCTCGTCAAGAACCTTTCCCTCATGTCGTGTATATCCGTCGGTTCGTTCTCCGGACCTGTCATCGAGTTCTTGGAGGAATGGGGGTTGGAGTCTTTGGAAGAAAATGCGCACTCGGCGACGCCTTGTACCAAGGTCTTCGTCAATGGTGTGTGGATGGGTGTACATCGTGACCCAGCCAATCTCGTGAAGACGATCAAGAAGCTTCGGCGGAAGGACGACATCAGTCCCGAAGTTTCAGTTGTTCGGGATATTCGTGAACGAGAACTACGTGTATACACTGATGCAGGTCGTGTATGTCGACCGCTGTTCATCGTCGAAGACCAGCAGTTACTCTTCAAGAAGAAGCACCTTCGATGGCTTGAGAATGTCAAGGACGACCAAGACAGACCATTCGAGTGGGATGACATTGTTCGAAAGGGATACGTCGAGCTGTTGGATGCAG
Cerrena_consors_FJ821542            ATCGATACACATACGCCTCTACACTGTCACATCTGCGGCGATGTAACACTCCTCTCGG{CT}CGTGAGGGTAAAATTGCCAAACCTCGACAACTGCACAATACACATTGGGG{CT}ATGGTGTGCCCTGC{GT}GA{AG}ACACCGGAAGGACAAGC{CT}TGTGGTCTCGTCAAGAA{CT}CTTTCGCTCATGTCATGTATCTCGGT{CT}GGTTCCTTCTC{CT}GGACCTGT{CT}ATCGAGTTCTTGGAGGAGTGGGGTTTGGAATCTTTGGAAGA{AG}AACGCGCACTCGGCGACGCCTTGTACGAAGGT{CT}TTCGT{CT}AATGGTGT{AG}TGGATGGGTGT{AG}CA{CT}CGAGACCCAGCCAAC{CT}TGGTGAAGACGAT{CT}AAGAAGCTTCGACGGAAGGACGACATCAGTCC{CT}GAAGT{CT}TCAGTCGTTCG{AG}GATATTCGTGAACGAGAACTGCGTGTATACACCGATGCAGGTCGTGTATGTCGACCATTGTTCATCGTTGAAGACCA{AG}CAG{CT}TGCT{AC}TTCAAGAAGAAGCACCTTCGATGGCTCGATACTGC{CT}AAGGATGACCAAGACAGGCCATTCGAGTGGGACGACATTGTCCGAAAGGGATATGTCGAGCT{CG}TTGGATGCGG
Cerrena_consors_FJ821543            ATCGATACACATACGCCTCTACACTGTCACATCTGCGGCGATGTAACACTCCTCTCGGCCGTGAGGGTAAAATCGCCAAACCTCGACAACTGCACAATACACATTGGGGTATGGTGTGCCCTGCTGAGACACCGGAAGGACAAGCTTGTGGTCTCGTCAAAAACCTTTCGCTCATGTCATGTATCTCGGTTGGTTCTTTTTCCGGACCTGTTATCGAGTTCTTGGAGGAGTGGGGTTTGGAATCTTTGGAAGAAAACGCGCACTCGGCGACGCCTTGTACGAAGGTCTTCGTTAATGGTGTATGGATGGGTGTACATCGAGACCCAGCCAACTTGGTGAAGACGATTAAGAAGCTTCGACGGAAGGACGACATCAGTCCCGAAGTCTCGGTTGTTCGAGATATTCGTGAACGAGAACTGCGTGTATACACTGATGCAGGTCGTGTATGTCGACCATTGTTCATCGTTGAAGACCAGCAGCTGCTATTCAAGAAGAAGCACCTTCGATGGCTCGATACTGCCAAGGATGACCAAGACAGGCCATTCGAGTGGGACGACATTGTCCGAAAGGGATATGTCGAGTTGTTGGATGCGG
Cerrena_consors_FJ821544            ATCGATATACATACGCTTCTACACTGTCACATCTGCGGCGATGTAACACCCCTCTTGGTCGTGAGGGTAAAATTGCCAAACCTCGACAACTGCATAATACACATTGGGGTATGGTGTGCCCTGCTGAGACACCGGAAGGACAAGCTTGTGGTCTCGTCAAAAACCTTTCGCTCATGTCATGTATCTCGGTTGGTTCTTTTTCCGGACCTGTCATCGAGTTCTTGGAAGAGTGGGGTTTGGAATCTTTGGAAGAAAACGCGCACTCGGCGACACCTTGTACGAAGGTTTTCGTCAATGGTGTGTGGATGGGTGTACATCGAGACCCAGCCAACTTGGTGAAGACGATTAAGAAGCTTCGACGGAAGGACGACATTAGTCCCGAAGTCTCAGTCGTTCGAGATATTCGTGAACGAGAACTGCGTGTATACACTGATGCAGGTCGTGTATGTCGACCATTGTTCATTGTTGAAGACCAACAGCTGCTATTCAAGAAGAAGCACCTTCGATGGCTCGATACTGCCAAGGATGACCAAGACAGGCCATTCGAGTGGGACGACATTGTCCGAAAGGGATATGTCGAGCTGTTGGATGCGG
Cerrena_consors_FJ821545            ATCGATACACATACGCGTCTACATTGTCACATCTGCGGCGATGTAACACTCCTCTCGGCCGTGAGGGTAAAATCGCCAAACCTCGACAACTGCACAATACACATTGGGGTATGGTGTGCCCTGCTGAGACACCGGAAGGACAAGCTTGTGGTCTCGTCAAGAACCTTTCGCTCATGTCATGTATCTCGGTTGGTTCATTCTCTGGACCTGTCATTGAGTTCTTGGAAGAGTGGGGTTTGGAATCTTTGGAAGAAAACGCGCACTCGGCGACGCCTTGTACGAAAGTCTTCGTCAATGGTGTGTGGATGGGTGTGCATCGAGACCCAGCCAACCTGGTGAAGACGATTAAGAAGCTTCGGCGGAAGGACGACATCAGTCCCGAAGTCTCGGTCGTTCGAGATATTCGTGAACGAGAACTGCGTGTATACACTGATGCAGGTCGTGTATGTCGACCACTGTTCATCGTTGAAGACCAGCAGCTGCTATTCAAGAAGAAGCACCTTCGATGGCTCGATACTGCCAAGGATGACCAAGACAGGCCATTCGAGTGGGATGACATTGTACGAAAGGGATATGTCGAGCTGTTGGATGCGG
Cerrena_unicolor_FJ821538           ACCGATATACCTATGCTTCGACATTGTCGCACTTGCGGCGATGTAACACTCCTCTCGGTCGTGAGGGTAAAATTGCCAAACCTAGACAGCTTCACAACACGCATTGGGGTATGGTGTGTCCTGCCGAAACACCGGAAGGACAAGCTTGTGGTCTCGTCAAGAACCTGTCACTCATGTCATGTATTTCCGTCGGTTCGTTCTCTGGACCCGTTATCGAGTTCTTGGAGGAGTGGGGTTTGGAGTCTTTGGAGGAGAATGCACACTCGGCAACACCTTGCACGAAAGTCTTCGTTAATGGTGTCTGGATGGGTGTCCACCGTGACCCAGCCAACCTCGTGAAGACAATCAAGAAGCTCCGACGGAAGGACGATATTAGTCCTGAAGTCTCGGTTGTTCGAGATATTCGTGAACGAGAATTGCGTGTATACACCGACGCAGGTCGTGTTTGTCGACCGCTGTTCATCGTTGAAGACCAGCAATTGCTCTTCAAGAAGAAACACCTTCGATGGCTCGAGAATAACAAAGACGACCAAGACAGACCATTCGAGTGGGATGATATCGTCCGGAAGGGATACATCGAATTGTTGGACGCCG
Cerrena_unicolor_FJ821539           AACCATATACCTATGCTTCGACATTGTCGCACTTGCGGCGATGTAACACTCCTCTCGGTCGTGAGGGTAAAATTGCCAAACCTAGACAGCTTCACAACACGCATTGGGGTATGGTGTGTCCTGCCGAAACACCGGAAGGACAAGCTTGTGGTCTCGTCAAGAACCTGTCACTCATGTCATGTATTTCCGTCGGTTCGTTCTCTGGACCCGTTATCGAGTTCTTGGAGGAGTGGGGTTTGGAGTCTTTGGAGGAGAATGCACACTCGGCAACACCTTGCACGAAAGTCTTCGTTAATGGTGTCTGGATGGGTGTCCACCGTGACCCAGCCAACCTCGTGAAGACAATCAAGAAGCTCCGACGGAAGGACGATATTAGTCCTGAAGTCTCGGTTGTTCGAGATATTCGTGAACGAGAATTGCGTGTATACACCGACGCAGGTCGTGTTTGTCGACCGCTGTTCATCGTTGAAGACCAGCAATTGCTCTTCAAGAAGAAACACCTTCGATGGCTCGAGAATAACAAAGACGACCAAGACAGACCATTCGAGTGGGATGATATCGTCCGGAAGGGATACATCGAATTGTTGGACGCCG
Cerrena_unicolor_FJ821540           ACCGATATACCTATGCTTCGACATTGTCGCACTTGCGGCGATGTAACACTCCTCTCGGTCGTGAGGGTAAAATTGCCAAACCT{AC}GACAGCTTCACAACACGCATTGGGGTATGGTGTGTCCTGCCGA{AG}ACACCGGAAGG{AC}CAAGCTTGTGGTCT{CT}GTCAAGAACCT{GT}TC{AG}CTCATGTCATGTATTTCCGTCGGTTCGTTCTC{CT}GGACCCGTTATCGAGTTCTTGGAGGAGTGGGGTTTGGAGTC{GT}{CT}T{CG}GA{AG}GAGAA{CT}GC{AG}CACTCGGC{AG}ACACC{CT}TG{CT}AC{AG}AA{AG}GTCTT{CT}GTTAATGGTGTCTGGATGGGTGTCCACCGTGACCCAGCCAACCTCGTGAAGAC{AG}ATCAAGAAGCTCCGACGGAAGGACGATATTAGTCCTGAAGTCTC{AG}GTCGTTCGAGATATTCGTGAACGAGAA{CT}TGCGTGTATACACCGACGCAGGTCGTGT{GT}TGTCGACC{AG}CTGTTCATCGT{GT}GAAGACCAGCAATTGCTCTTCAAGAAGAAACACCTTCGATGGCTCGAGAA{CT}AA{CT}AAAGA{CT}GACCAAGACAGACCATTCGAGTGGGA{CT}GATATCGTCCGGAAGGGATACATCGAATTGTTGGACGCCG
Cerrena_unicolor_FJ821541           ACCGATATACCTA{CT}GCTTCGACATTGTCGCATCTGCGGCGATGTAACAC{AT}CCTCTCGGTCGTGAGGGTAAAATCGCCAAACCTCGTCAGCTGCACAACACGCATTGGGGTATGGTGTGTCCTGCCGAAACACCGGAAGGACAGGCTTGTGGTCTCGTCAAGAACCTGTCACTCATGTCATGTATTTCCGTCGGTTCGTTCTCCGG{AG}CCCGTTATCGAGTTCTTGGAGGAGTGGGGTTTGGAGTCTTT{AG}GAGGAGAATGCACACTCGGCAACACCTTGCACGAAAGTCTTCGTTAATGGTGTCTGGATGGGTGTCCACCGTGACCCAGCCAAC{CT}TCGTGAAGACGATCAAGAAGCTCCGACGGAAGGACGATATTAGTCCTGAAGTCTCGGTTGTTCGAGATATTCGTGAACGAGAATTGCGTGTATACACCGACGCAGGTCGTGTTTGTCGACCGCTGTTCATCGTTGAAGACCAGCAATTGCTCTTCAA{AG}AAGAAACACCTTCGATGGCTCGAGAACAA{CT}AAAGACGACCAGGACAGACCATTCGAGTGGGACGACATTGTCCGAAAGGGATATGTCGAGTTGTTGGATGCAG
Spongipellis_pachyodon_DQ408123     ACCGATATACTTATGCTTCGACATTATCCCACTTGAGACGGTGTAACACGCCTCTTGGTCGTGAGGGAAAAATTGCAAAGCCTCGACAATTGCACAACCACCATTGGGGTATGGTTTGTCCTGCGGAGACCCCCGAAGGGCAGGCTTGCGGTCTCGTCAAAAACCTGTCACTCATGTCGTGCATTTCTGTCGGTTCATTCTCCGGTCCTGTCATCGAGTTCTTGGAGGAGTGGGGTTTGGAATCCTTGGAAGAAAATGTTCACTCGCCCACGCCTACGACGAAAGTGTTCGTGAACGGTGTCTGGATGGGCGTTCACCGAGACCCAGTCAACCTTGTTAAGACTATCAAGAAGCTGCGACGAAAGGACGATATTAGCCCTGAAGTTTCGGTTGTACGAGATACTCGAGAGCGGGAACTTCGGATTTACACCGATGCCGGTCGTGTCTGTCGACCTCTATTCATTGTAGAAGATGAGCAGCTTGCCATCAAAAAGAAACACATACGCATGCTCGAA------------GACAAGGACAGCAACTTCGCGTGGGATGACATGATTAAGAAGGGTATCATCGAGTTATTGGATGCCG
;
END;

BEGIN CODONS;
CODONPOSSET  CodonPositions (CHARACTERS = 'Fig 2(D)') = 
		1: 1-592\3,
		2: 2-593\3,
		3: 3-594\3;
CODONPOSSET * CodonPositions (CHARACTERS = 'Fig 2(D)') = 
		1: 1-592\3,
		2: 2-593\3,
		3: 3-594\3;
END;