#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 23, 2024; 11:06 GMT

TreeBASE (cc) 1994-2008

Study reference:
Visagie C., Roets F., & Jacobs K. 2009. A new species of Penicillium, P. ramulosum
sp. nov., from the natural environment. Mycologia, 101(6): 888-895.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S10243]

BEGIN TAXA;
        TITLE  M4967;
        DIMENSIONS NTAX=9;
        TAXLABELS
            Penicillium_cecidicola_KAS504_FJ753295
            Penicillium_dendriticum_KAS1190_FJ753294
            Penicillium_dendriticum_KAS849_FJ753293
            Penicillium_ramulosum_CV113_FJ753290
            Penicillium_ramulosum_CV318_FJ753288
            Penicillium_ramulosum_CV330_FJ753289
            Penicillium_ramulosum_CV333_FJ753291
            Penicillium_ramulosum_KAS2792_FJ765525
            Talaromyces_trachyspermus_AY753371
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M4724]

	TITLE Beta_tubulin_matrix;
	LINK TAXA = M4967;
	DIMENSIONS NCHAR=432;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                                    10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430  ]
[                                                     .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .  ]
Penicillium_cecidicola_KAS504_FJ753295       TGGTGAGTTCAA----GAACAGAGATCACGAATCCACACTTCCAATTTCCATCCAGAGGCTAACAAGTTCTAGGCAAGTCATCTCTGGCGAACACGGTCTTGATGGCTCCGGTGTGTAAGTATA--AAGAATCGAA-GCA--CAAAC-GAAGTCG--ACGATATCTGATGAAAGGCAGTTACAATGGCTCCTCCGATCTTCAATTGGAGCGTATGAACGTTTACTTCAACGAGGTACGTTATATGGACAGTCATCCAGCGGATCGACAAACAATACTTATGCAA--GTTACAGGCCAGCGGA-----------------AACAAATATGTCCCTCGTGCTATTCTCGTCGACTTGGAGCCTGGTACCATGGATGCCGTCCGCGCTGGTCCCTTTGGTCAGCTTTTCCGTCCCGACAACTTTGTTTTCGGTCA
Penicillium_dendriticum_KAS1190_FJ753294     TGGTGAGTTCAATCAAGAACAGAGACCATAAATTCGCGCTTCCAGTGCCAACCCCAAGGCTAACAAATTCTAGGCAAGTCATCTCCGGCGAACACGGTCTCGATGGCTCCGGTGTGTAAGTAC---AAGGGTCGAT-CCA--GAAAA-GAAGTCG--ACGATATCTGATGAAAGGCAGTTACAATGGCTCCTCCGATCTTCAATTGGAGCGTATGAACGTTTACTTCAACGAGGTACGTTTTATAAACAGTCCCTCAGCGGAGACACGAACAATACTTACGCAT--GGCACAGGCTAGCGGA-----------------AACAAATATGTTCCTCGTGCTGTCCTTGTCGACTTGGAGCCCGGTACCATGGACGCCGTCCGCGCTGGTCCCTTTGGTCAGCTTTTCCGTCCCGACAACTTTGTTTTCGGTCA
Penicillium_dendriticum_KAS849_FJ753293      TGGTGAGTTCAATCAAGAACAGAGACCATAAATTCGCGCTTCCAGTGCCAACCCCAAGGCTAACAAATTCTAGGCAAGTCATCTCCGGCGAACACGGTCTCGATGGCTCCGGTGTGTAAGTAC---AAGGGTCGAT-CCA--GAAAA-GAAGTCG--ACGATATCTGATGAAAGGCAGTTACAATGGCTCCTCCGATCTTCAATTGGAGCGTATGAACGTTTACTTCAACGAGGTACGTTTTATAAACAGTCCCTCAGCGGAGACACGAACAATACTTACGCAT--GGCACAGGCTAGCGGA-----------------AACAAATATGTTCCTCGTGCTGTCCTTGTCGACTTGGAGCCCGGTACCATGGACGCCGTCCGCGCTGGTCCCTTTGGTCAGCTTTTCCGTCCCGACAACTTTGTTTTCGGTCA
Penicillium_ramulosum_CV113_FJ753290         TGGTAAGTTCAA----GAACAGAGATCACGAATCCACGCTTCCAATTCCCATCCAGAGGCTAACAAGTTCTAGGCAAGTCATCTCTGGCGAACACGGCCTTGATGGCTCCGGTGTGTAAGTAT---AAGAATCGAA-GCA--CAAAC-GAAGTCG--ACGATATCTGATGAAAGGCAGTTACAATGGCTCCTCCGATCTTCAACTGGAGCGTATGAACGTTTACTTCAACGAGGTACGTTATAAGGACAGTCACCCAGCGGATTCACGAACAATACTTATGCAA--ACAACAGGCCAGCGGA-----------------AACAAATATGTCCCTCGTGCTATTCTCGTCGACTTGGAGCCCGGTACCATGGATGCCGTCCGCGCTGGTCCCTTTGGTCAGCTTTTCCGTCCCGACAACTTTGTTTTCGGTCA
Penicillium_ramulosum_CV318_FJ753288         TGGTAGGTTCAA----GAACAGAGATCACGAATCCACGCTTCCAATTCCCATCCAGAGGCTAACAAGTTCTAGGCAAGTCATCTCTGGCGAACACGGCCTTGATGGCTCCGGTGTGTAAGTAT---AAGAATCGAA-GCA--CAAAC-GAAGTCG--ACGATATCTGATGAAAGGCAGTTACAATGGCTCCTCCGATCTTCAACTGGAGCGTATGAACGTTTACTTCAACGAGGTACGTTATAAGGACAGTCACCCAGCGGATTCACGAACAATACTTATGCAA--ACAACAGGCCAGCGGA-----------------AACAAATATGTCCCTCGTGCTATTCTCGTCGACTTGGAGCCCGGTACCATGGATGCCGTCCGCGCTGGTCCCTTTGGTCAGCTTTTCCGTCCCGACAACTTTGTTTTCGGTCA
Penicillium_ramulosum_CV330_FJ753289         TGGTAGGTTCAA----GAACAGAGATCACCAATCCACGCTTCCAATTCCCATCCAGAGGCTAACAAGTTCTAGGCAAGTCATCTCTGGCGAACACGGCCTTGATGGCTCCGGTGTGTAAGTAT---AAGAATCGAA-GCA--CAAAC-GAAGTCG--ACGATATCTGATGAAAGGCAGTTACAATGGCTCCTCCGATCTTCAACTGGAGCGTATGAACGTTTACTTCAACGAGGTACGTTATAAGGACAGTCACCCAGCGGATTCACGAACAATACTTATGCAA--ACAACAGGCCAGCGGA-----------------AACAAATATGTCCCTCGTGCTATTCTCGTCGACTTGGAGCCCGGTACCATGGATGCCGTCCGCGCTGGTCCCTTTGGTCAGCTTTTCCGTCCCGACAACTTTGTTTTCGGTCA
Penicillium_ramulosum_CV333_FJ753291         TGGTAAGTTCAA----GAACAGAGATCACGAATCTACGCTTCCAATTCCCATCCAGAGGCTAACAAGTTCTAGGCAAGTCATCTCTGGCGAACACGGCCTTGATGGCTCCGGTGTGTAAGTAT---AAGAACCGAA-GCA--CAAAC-GAAGTCG--ACGATATCTGATGAAAGGCAGTTACAATGGCTCCTCCGATCTTCAACTGGAGCGTATGAACGTTTACTTCAACGAGGTATGTTATAAGGACAGTCACCCAGCGGATTCACGAACAATACTTATGCAA--ACAACAGGCCAGCGGA-----------------AACAAATATGTCCCTCGTGCTATTCTCGTCGACTTGGAGCCCGGTACCATGGATGCCGTCCGCGCTGGTCCCTTTGGTCAGCTTTTCCGTCCCGACAACTTTGTTTTCGGTCA
Penicillium_ramulosum_KAS2792_FJ765525       TGGTAAGTTCAA----TAAATGAGATCACGAATCCACGCTTCCAATTCCCATCCAGAGGCTAACAAGTTCTAGGCAAGTCATCTCTGGCGAACACGGCCTTGATGGCTCCGGTGTGTAAGTAT---AAGAATCGAA-GCA--CAAAC-GAAGTCG--ACGATATCTGATGAAAGGCAGTTACAATGGCTCCTCCGATCTTCAACTGGAGCGTATGAACGTTTACTTCAACGAGGTATGTTATAAGGACAGTCACCCAGCGGATTCACGAACAATACTTATGCAA--ACAACAGGCCAGCGGA-----------------AACAAATATGTCCCTCGTGCTATTCTCGTCGACTTGGAGCCCGGTACCATGGATGCCGTCCGCGCTGGTCCCTTTGGTCAGCTTTTCCGTCCCGACAACTTTGTTTTCGGTCA
Talaromyces_trachyspermus_AY753371           TGGTGAGTATCG----AAAAAACAGCCACCAAATGAAAA-GCGAA-----A---A-A-GCTAACTTTTTACAGGCAAATCATCTCTGGCGAACACGGTCTCGACGGTGCCGGAATGTGAGTGCTTTGC-TA-CGATTCCAATCAACCAGAAAAAAAAACCGTATCTGACAGCATCCAGTTACAATGGCTCCTCCGACCTCCAGTTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTGAAGAGTTT---CCAAAATAAGGAA--TAACAGAAGCAATAGAAATAAAAGTACTCACACATCGAATATAGGCCAGCGGAAACAAATATGTCCCTCGTGCTGTCCTTGTTGACTTGGAGCCCGGTACCATGGACGCCGTCCGCGCTGGTCCCTTTGGTCAGCTCTTCCGTCCCGACAACTTTGTTTTCGGCCA
;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions (CHARACTERS = Beta_tubulin_matrix) = 
		N: 1-432;
CODONPOSSET  CodonPositions (CHARACTERS = Beta_tubulin_matrix) = 
		N: 1-432;
END;