#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 17, 2024; 9:34 GMT TreeBASE (cc) 1994-2008 Study reference: Madrid H., Cano J., Stchigel A.M., Gené J., & Guarro J. 2010. Ramophialophora humicola and Fibulochlamys chilensis, two new microfungi from soil. Mycologia, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S10218] BEGIN TAXA; TITLE M4918; DIMENSIONS NTAX=22; TAXLABELS Cercophora_caudata Cercophora_samala Cercophora_sparsa Cercophora_sulphurella Cladorrhinum_brunnescens Cladorrhinum_bulbillosum Cladorrhinum_foecundissimum Cladorrhinum_phialophoroides Cladorrhinum_samala Gelasinospora_tetrasperma Neurospora_tetrasperma Pestalotiopsis_versicolor Podospora_anserina Podospora_appendiculata Podospora_comata Podospora_didyma Podospora_fimiseda Ramophialophora_humicola Ramophialophora_vesiculosa Zopfiella_erostrata Zopfiella_tabulata Zopfiella_tetraspora ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M4862] TITLE Ramophialophora_and_other_Sordariales; LINK TAXA = M4918; DIMENSIONS NCHAR=342; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Cercophora_caudata CGT-AACAAAACCAGCGGAGGGGCCTCTCTGAGT-AA-TTCTA-----AAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCACTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCATCAAGCCCCAG-GCTT-GTGTTGGAGCCCTGCGGCTG-------CCGCAGCCTCCTAAAAG-CAGTGGCGGGC-TCGCT-ATC-A-CA-CCGAGTGCAGTAGATTT-----CTCTTCGCT Cercophora_samala CGCGAACCCAGTT-GCTTCGGGGCCTCTCTGAGT-AA-CG-CACTT--AA-TAAGTCAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCATCAAGCCCCC-GGCTT-GTGTTGGGGACCTGCGTCCGA------C-GCAGGCCCTGAAAAC-CAGTGGCGGGC-TCGCT-GTCCA-CA-CCGAGCGTAGTAGCT------A-ACCTCGCT Cercophora_sparsa CGCGAACGTCGTT-GCTTCGGGGCCTCTCTGAGT--ATT--TATAC--AAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCATCAAGCCCCAG-GCTT-GCGTTGGGGTCCTGCGGCTG-------CCGCAGGCCCTGAAAAA-CAGTGGCGGGC-TCGCT-GTC-A-CA-CCGAGCGTAGTAA-T------ACATCTCGCT Cercophora_sulphurella CGCGAACGTCGTT-GCTTCGGGGCCTCTCTGAGT--ATTTATAC----AAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCATCAAGCCCC-GGGCTT-GTGTTGGGGCCCTGCGGTTG-------CCGCAGGCCCTTAAAAA-CAGTGGCGGGC-TCGCT-GTC-A-CA-CCGAGCGTAGTAA-T------ACATCTCGCT Cladorrhinum_brunnescens TGTGAACCTAGTT-GCTTCGGGGCCTCTCTGAGT--ATCG-TACTT--AA-TAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCGGTATTCCGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCATCAAGCCC-AGCGCTT-GTGTTGGGGACCTGCGGCTG-------CCGCAGGCCCTGAAAAC-CAGTGGCGG-CCTCGCT-GT--AGCA-CCGGGCGTAGTAGTTA-----A-ATCTCGCT Cladorrhinum_bulbillosum CGTGAACCTAGTT-GCTTCGGGGCCTCTCTGAGTT-ACTG-TACTTTTAATTAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCCACCATCAGGCCCCCGGGCCT-GTGTTGGGGACCTGCGGCTGC------CCGCAGGCCCCGAAATT-CAGTGGCGGTCG-CGCC-GT--AGCAACCGAGCGTAGTAACTAAA---ACGTCTCGCT Cladorrhinum_foecundissimum CGCGAACCCAGTT-GCTTCGGGGCCTCTCTGAGT--ACTG-TACTTT-AA-TAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGACTTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCGAGTATTCTCGCGGGCATGCCTGTTCGAGCGTCATTTCAACCATCAAGCCCCC-GGCTT-GTGTTGGGGACCTGCGGCTGC------CCGCAGGCCCTGAAATC-CAGTGGCGGGC-TCGCT-GTC--GCA-CCGAGCGTAGTAGCAT-----ACTTCTCGCT Cladorrhinum_phialophoroides TGTGAACGAAGTT-GCTTCGGGGCCTCTCTGAGT--ATTG-CACTT--AAATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCATCAAGCCCCCGGGCTT-GTGTTGGGGACCTGCGTCTGA------CCGCAGGCCCTGAAAAC-CAGTGGCGGGC-TCGCT-GTCCA-CA-CCGAGCGTAGTAACT------AAACCTCGCT Cladorrhinum_samala TGTGAACCTAGTT-GCTTCGGGGCCTCTCTGAGT--ACTG-TACTT--AAATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCATCAAGCCCCGGCGCTT-GTGTTGGGGACCCGCGGCTG-------CCGCGGGCCCTTAAAGA-CAGTGGCGGTCCTCGCT-G-C-AGCA-CCGAGCGTAGTAGCTAT----ACACCTCGCC Gelasinospora_tetrasperma CGCGAATCTGGTT-GCCTCGGTGTCTCTCTGAGTAAACTTTTA------AATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCTCGCCAGTATTCTGGCGAGCATGCCTGTTCGAGCGTCATTTCAACCATCAAGCTCT---GCTT-GCGTTGGGGATCCGCGGCTGC------CCGCGGTCCCTCAAAAA-CAGTGGCGGGC-TCGCTAGTC-A-CA-CCGAGCGTAGTAACTC------TACATCGCT Neurospora_tetrasperma CGCGAATCTGGTT-GCCTCGGTGTCTCTCTGAGTAAACTTTTA------AATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCTCGCCAGTATTCTGGCGAGCATGCCTGTTCGAGCGTCATTTCAACCATCAAGCTCT---GCTT-GCGTTGGGGATCCGCGGCTGC------CCGCGGTCCCTCAAAAT-CAGTGGCGGGC-TCGCTAGTC-A-CA-CCGAGCGTAGTAACTC------TACATCGCT Pestalotiopsis_versicolor CGT-AACAAAACCAGCGGAGGATGTAATCTGAGC--G-TCTTATTTT--AATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTTAAGCCT-A--GCTTAGTGTTGGGAATCTACTTCTCTTAGGAGTTGTAGT-TCCTAAAATACAACGGCGGAT-TTG-TAGTA--TCCTCTGAGCGTAGTAATTTT-----TTTCTCGCT Podospora_anserina CGCGAACCGAGTT-GCTTCGGGGCCTCTCTGAGT--AT---TACTT--AAACAAGTCAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCATCAAGCCCC-GGGCTT-GTGTTGGGGACCTGCGTCCGA-------CGCAGGCCCTGAAAAC-CAGTGGCGGGC-TCGCT-GTCCA-CG-CCGAGCGTAGTAACT-------CACCTCGCT Podospora_appendiculata CGCGAACGTCGTT-GCTTCGGGGCCTCTCTGAGT--ATTTTTAT----AA-TAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCATCAAGCCCT---GCTT-GCGTTGGGGTCCTGCGGCTGC------CCGCAGGCCCTTAAAAC-CAGTGGCGGGC-TCGCT-GTC-A-CT-CCGAGCGCAGTAA-T------ACATCTCGCT Podospora_comata CGCGAACCAAGTT-GCTTCGGGGCCTCTCTGAGT--AT---TACTT--AAACAAGTCAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCATCAAGCCCC-GGGCTT-GTGTTGGGGACCTGCGTCCGA-------CGCAGGCCCTGAAAAC-CAGTGGCGGGC-TCGCT-GTCCA-CG-CCGAGCGTAGTAACT-------CACCTCGCT Podospora_didyma CGCGAACGTCGTT-GCTTCGGGGCCTCTCTGAGT-AATT--TATAC--AAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCATCAAGCCCCCG-GCTT-GTGTTGGGGCCCTGCGGCTG-------CCGCAGGCCCTTAAAAA-CAGTGGCGGGC-TCGCT-GTC-A-CA-CCGAGCGTAGTAA-T------ACATCTCGCT Podospora_fimiseda TGTGAACCGCGTTTGCCTCGGGGCCTCTCTGAGTTAACTG-TACTTT-AAATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCATCAGGCCCCCGGGCTT-GTGTTGGGGACCTGCGGCTGC------CCGCAGGCCCTGAAAGA-CAGTGGCGGTCC-CGCT-GT--AGCA-CCGAGCGTAGTAACTTAAAAAACACCTCGCT Ramophialophora_humicola CGCGAACGTCGTT-GCCTCGGGGCCTCTCTGAGT--ATT--TATAA--AAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCATCAAGCCCTA-GGCTT-GTGTTGGGGCCCTGCGGCTG-------CCGCAGGCCCTGAAAAA-CAGTGGCGGGC-TCGCT-GTC-A-CA-CCGAGCGTAGTAAA-------ACATCTCGCT Ramophialophora_vesiculosa CGCGAACGTCGTT-GCTTCGGGGCCTCTCTGAGT-AATT-TTAT----AA-TAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCATCAAGCCCT---GCTT-GTGTTGGGGTCCTGCGGCTGT------CCGCAGGCCCTTAAAAC-CAGTGGCGGGC-TCGCTAGTC-A-CT-CCGAGCGCAGTAA-T------ACATCTCGCT Zopfiella_erostrata CGT-AACAAAACCAGCGGAGGGGCCTCTCTGAGT-AA-TTCTA-----AAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCACTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCATCAAGCCCCAG-GCTT-GTGTTGGAGCCCTGCGGCTG-------CCGCAGCCTCCTAAAAG-CAGTGGCGGGC-TCGCT-ATC-A-CA-CCGAGTGCAGTAGATTT-----CTCTTCGCT Zopfiella_tabulata CGCGAACGTCGTT-GCTTCGGGGCCTCTCTGAGT-AATTTATAC----AAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCATCAAGCCCCC-GGCTT-GTGTTGGGGCCCTGCGGCTG-------CCGCAGGCCCTTAAAAA-CAGTGGCGGGC-TCGCT-GTC-A-CA-CCGAGCGTAGTAA-T------ACATCTCGCT Zopfiella_tetraspora CGCGAACCTAGTT-GCTTCGGGGCCTCTCTGAGT-AA-CG-TACTT---AATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCATCAAGCCCC-GGGCTT-GTGTTGGGGACCTGCGTCCGA-------CGCAGGCCCTGAAAGC-CAGTGGCGGGC-TCGCT-GTCCA-CA-CCGAGCGTAGTAGCTA-------ACCTCGCT ; END; BEGIN CODONS; CODONPOSSET CodonPositions (CHARACTERS = Ramophialophora_and_other_Sordariales) = N: 1-342; CODONPOSSET * CodonPositions (CHARACTERS = Ramophialophora_and_other_Sordariales) = N: 1-342; END;