#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 17, 2024; 10:50 GMT

TreeBASE (cc) 1994-2008

Study reference:
Madrid H., Cano J., Stchigel A.M., Gené J., & Guarro J. 2010. Ramophialophora humicola
and Fibulochlamys chilensis, two new microfungi from soil. Mycologia, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S10218]

BEGIN TAXA;
        TITLE  M4919;
        DIMENSIONS NTAX=14;
        TAXLABELS
            Asterophora_lycoperdoides
            Asterophora_parasitica
            Fibulochlamys_chilensis
            Flammulina_velutipes
            Leucopaxillus_gentianeus
            Lyophyllum_decastes
            Lyophyllum_fumosum
            Lyophyllum_ulmarium
            Phanerochaete_chrysosporium
            Pholiota_aurivella
            Squamanita_odorata
            Tephrocybe_ambusta
            Tephrocybe_tylicolor
            Xerula_radicata
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M4878]

	TITLE Fibulochlamys_chilensis_and_other_basidiomycetes;
	LINK TAXA = M4919;
	DIMENSIONS NCHAR=529;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                       10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520         ]
[                                        .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         ]
Asterophora_lycoperdoides       CCGTCCGAGTTGTAATCTAGAGAAGCATTACCCGCGTTGGACCGTGTACAAGTCTCCTGGAACGGAGCGTCATAGAGGGTGAGAAT-CCCGTCTTTGACACGGACTACCAGGGCTT-TGTGGTATG-CTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTC-AGTCGCGTTTGCCGGGGATCAGCCTTGC---TCTTTTGCTTGGTGTACT-TCCTGG-TTGACGGGTCAACATCAATTTTGACCGGTGGATAAAGGTTAGGGGAATGTGGCATCTCCG--GATGTGTTATAGCCCTTGGTCACATACATCGGTTGGGATTGAGGAACTCAGCACGCCGCAAGGCCGGGT-TTTTAACCACGTACGTGCTTAGGATGTTGGCATAA
Asterophora_parasitica          CTGCCCGAGTTGTAATCTAGAGAAGCATTACCCGCGTTGGACCGTGTACAAGTCTCCTGGAACGGAGCGTCATAGAGGGTGAGAAT-CCCGTCTTTGACACGGACTACCAAGGCTT-TGTGGTATG-CTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTC-AGTCGCGTCTGCCAGGGATCAGCCTTGC---TCTTTTGCTTGGTGTACT-TCCTGG-TTGATGGGTCAACATCAATTTTGACCGGTGGATAAAGGTTAGGGGAATGTGGCATCTCCG--GATGTGTTATAGCCCTTGGTCGCATACATCGGTTGGGATTGAGGAACTCAGCACGCCGCAAGGCCGGGT-TTTTAACCACGTACGTGCTTAGGATGTTGGCATAA
Fibulochlamys_chilensis         CCGTCCGAGTTGTAATCTAGAGAAGTGCTATCCGCGCTGGACCGTGTATAAGTCTCCTGGAACGGAGCGTCATAGAGGGTGAGAAT-CCCGTCTTTGACACGGACTCCCAGTGCTT-TGTGATGCG-CTCTCAAAGAGTCGCGTTGTTTGGGAATGCAGCGCTAAATGGGTGGTAAATTCCATCTAAAGCTAAATATAGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTGAAACAGTACGTGAAATTGCTGAAAGGGAAACGCTTGAGGTC-AGTCGCGTCGGCCGGGGATCAGCCTTGC---TCTTTTGCTTGGTGTACT-TCCCGG-CCGACGGGCCAGCATCAGTTTCGATCGGCGGAAAAAGGCCAGGGGAATGTGGCACCTTCG--GGTGTGTTATAGCCCCTGGTCATATACGTCGGTCGGGACTGAGGAACTCAGCACGCCGCAAGGCCGGGT-CTTTGACCACGTTCGTGCTTAGGATGCTGGCATAA
Flammulina_velutipes            CTGTCCGAGTTGTAATTTAGAGAAGTGTTGCCCGCGCTGGACCGTGTACAAGTCTCCTGGAATGGAGCGTCATAGAGGGTGAGAAT-CCCGTCTTTGACACGGACTCCCAGTGCAT-TGTGGTACG-CTCTCAAAGAGTCGTGTTGTTTGGGAATGCAGCACTAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTAAAGTCCAGTCGCGTCGGTTGGGAATCAGTCTCGC---TCTTTTGCTTGACGTACT-TCCTAG-CTGACGGGTCAGCATCAGTTTTGATCGTTGGATAAAGGTTGGAGGAATGTGGCACCTTCG--GGTGTGTTATAGCCTCTGGTTGTATACAACGGTTGGGACTGAGGAACTCAGCACGCCGAAAGGCCGGGTACTTGTACCACGTACGTGCTTAGGATGCTGGCATAA
Leucopaxillus_gentianeus        CTGTCCGAGTTGTAATCTAGAGAAGTGTTATCCGCGTTGGACCGTGTACAAGTCTCCTGGAATGGAGCGTCATAGAGGGTGAGAAT-CCCGTCTTTGACACGGACTACCAGGGCTTATGTGATGCG-CTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTC-AGTCATGTTGCCCAAGGATCAACCTTGC---TCTTTTGCTTGGTGTACT-TCTTGGATTAACAGGTCAGCATCAATTTTGATCGGTGGATAAAGTTCAGAGGAATGTGGCATCTTCG--GATGTGTTATAGCCTTTGTCCGTATACATCGGTTGGGATTGAGGAACTCAGCATGCCGCAAGGCCAGGT-TTTAAACCATGTTCATGCTTAGGATGCTGGCATAA
Lyophyllum_decastes             CCGTCCGAGTTGTAATCTAGAGAAGCGTTATCCGCGCTGGACCGTGTATAAGTCTCCTGGAACGGAGCGTCATAGAGGGTGAGAAT-CCCGTCTTTGACACGGACTACCAGGGCTT-TGTGATGCG-CTCTCAAAGAGTCGCGTTGTTTGGGAATGCAGCGCTAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTGAAACAGTACGTGAAATTGCTGAAAGGGAAACGCTTGAGGTC-AGTCGCGTCGGCCGGGGATCAGCCTTGC---TCTTTTGCTTGGTGTACT-TCCCGG-CCGATGGGCCAGCATCAGTTTCATTTGGTGGAGAAAGGCCAGGGGAATGTAGCACCTTCG--GGTGTGTTATAGCCCCTGGTCATATACGTCGAATGGGACTGAGGAACTCAGCACGCCGCAAGGCCGGGT-CTTTGACCACGTACGTGCTTAGGATGCTGGCATAA
Lyophyllum_fumosum              CTGTCCGAGTTGTAATCTAGAGAAGCGTTATCCGCGCTGGACCGTGTATAAGTCTCCTGGAACGGAGCGTCATAGAGGGTGAGAAT-CCCGTCTTTGACACGGACTACCAGGGCTC-TGTGATGCG-CTCTCAAAGAGTCGCGTTGTTTGGGAATGCAGCGCTAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTGAAATAGTACGTGAAATTGCTGAAAGGGAAACGCTTGAGGTC-AGTCGTGTCGGCCGGGGATCAGCCTTGC---TCTTTTGCTTGGTGTACT-TCCTGG-TTGATGGGCCAGCATCAGTTTCAACCGGCGGAAAAAGATTAGGGGAATGTGGCACCTTCG--GGTGTGTTATAGCCTCTGGTCATATACGTCGGTTGGGACTGAGGAACTCAGCACGCCGCAAGGCCGGGT-CTTTGACCACGTACGTGCTTAGGATGCTGGCATAA
Lyophyllum_ulmarium             CTGCCCGAGTTGTAATCTAGAGAAGCATTATCCGCGCTGGACCGTGTACAAGTCTCCTGGAACGGAGCGTCATAGAGGGTGAGAAT-CCCGTCTTTGACACGGACTACCAGGGCTT-TGTGATGTG-CTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTC-AGTCGCGTTGGCCGGGGATCAACCTTGC---T--TTTGCTTGGCGTACT-TTCCGG-TCGACGGGTCAGCATCAATTTTGACCGGTGGATAAAGGTCAGGGGAATGTGGCATCTTCG--GATGTGTTATAGCCCTTGGTCGCATACATCGGTTGGGATTGAGGAACTCAGCACGCCGCAAGGCCGGGT-TTTTAACCACGTACGTGCTTAGGATGCTGGCATAA
Phanerochaete_chrysosporium     CTGTCCGAGTTGTAATCTGGAGAAGCGTCTTCCGCGCTGGACCGTGTACAAGTCTCCTGGAACGGAGCGTCATAGAGGGTGAGAAT-CCCGTCTTTGACACGGACTACCAGTGCTC-TGTGATGCG-CTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAACTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCTGAAAGGGAAACGCTTGAAGTC-AGTCGCGTTTGCTAGGACTCAGCCTGGT-----TTCGGCCTGGTGCACT-TCCTAG-TAAACGGGCCAGCATCACTTTTGGCTGCGGGAAAAAGGTTAGAGGAATGTGGCACCCTCG--GGTGTGTTATAGCCTCTAGCTGTATACCGTGGCTGGGAGTGAGGAACTCAGCACGCCTCT-GGCGGGG--CTTCGGCCACCTTCGTGCTTAGGATGCTGGCGTAA
Pholiota_aurivella              CCATCCGAGTTGTAATCTAGAGAAGTGTTATCCGCGCTGGACCGTGTACAAGTCTCCTGGAATGGAGCGTCATAGAGGGTGAGAAT-CCCGTCTTTGATACGGACTGCCAGGGCTT-TGTGATGCG-CTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCTGAAAGGGAAACGCTTGAAGTC-AGTCGCGTTGTCTGGGGATCAACCTTAC-----TTTTGTTGGGCGTACTTTCCAGA--TGACGGGTCAGCATCAATTTTGACCGTTGGATAAAGTCTAGAGGAATGTGGCATCTTCG--GATGTGTTATAGCCTTTGGTCGCATACAACGGTTGGGATTGAGGAACTCAGCACGCCGAAAGGCCGGGTACTTGTACCACGTTCGTGCTTAGGATGCTGGCATAA
Squamanita_odorata              CTGTCCGAGTTGTAATCTAGAGAAGTGTTATCCGCGCTGGACCGTGTACAAGTCTCCTGGAATGGAGCGTCATAGAGGGTGAGAAT-CCCGTCTTTGACACGGACTACCAGGGCTT-TGTGATGCG-CTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCTGAAAGGGAAACGCTTGAAGTC-AGTCATGTTGGCCAGGAATTAGCCCAGCATTTTTCTTGCTGGGTGCACAGTCCTGGTTTGGCAGGTCAGCATCAATTTTGACCAATGGATAAAAGTGTGGGGAATGTGGCATCTTTTTTGATGTGTTATAGACTCATGCTGGATGTATTGGTTGGGATTGAGGAATTCAGCACGCCGAAAGGCCGGGA-GTTTATCCACGTTCGTGCTTAGGATGCTGGCATAA
Tephrocybe_ambusta              CCGTCCGAGTTGTAATCTAGAGAAGCGTTATCCGCGCTGGACCGTGTATAAGTCTCCTGGAACGGAGCGTCATAGAGGGTGAGAAT-CCCGTCTTTGACACGGACTACCAGGGCTT-TGTGATGCG-CTCTCAAAGAGTCGCGTTGTTTGGGAATGCAGCGCTAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCTGAAAGGGAAACGCTTGAAGTC-AGTCGCGTCGGCCGGGGATCAGCCTTGC---TCTTTTGCTTGGTGTACT-TCCCGG-TCGACGGGCCAGCATCAGTTTCGACCGGCGGATAAAGGCCAGGGGAATGTGGCACCTTCG--GGTGTGTTATAGCCCCTGGTCACATACGTCGGTTGGGACTGAGGAACTCAGCACGCCGAAAGGCCGGGT-CTTTGACCACGTACGTGCTTAGGATGCTGGCATAA
Tephrocybe_tylicolor            TTGCCCGAGTTGTAATCTAGAGAAGCATTATCCGCGCTGGAC-GTGTACAAGTCTCCTGGAACGGAGCGTCATAGAGGGTGAGAAT-CCCGTCTTTGACACGGACTACCAGGGCTT-TGTGATGTG-CTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTC-AGTCGCGTTGGCCGGGGATCAGCCTTGC---TCTTTTGCTTGGTGTACT-TCCTGG-TTGACGGGTCAGCATCAATTTTGACCGGTGGAAAAAGGTCAAGGGAATGTGGCATCTTCG--GATGTGTTATAGCCCTTGGTCACATACATCGGTTGGGATTGAGGAACTCAGCACGCCGCAAGGCCGGGT-CTTTGACCACGTACGTGCTTAGGATGCTGGCATAA
Xerula_radicata                 CTGTCCGAGTTGTAATTTAGAGAAGTGTTACCCTTGCTGGACCGTGTACAAGTTTCCTGGAACGGAACGTCATAGAGGGTGAGAAT-CCCGTCTTTGACACGGACTCCCAGTATTT-TGTGGTACG-CTCTCGAAGAGTCGTGTTGTTTGGGAATGCAGCACTAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCTAGTCGCGTCGGTTGGAAATCAGTCTTGC-----TTCTGCTTGATGTACT-TTCTGA-TCGACGGGTCAGCATCAGTTTTGACCGTTGGATAAAGGTTGGGGGAATGTGGCATCCTCG--GATGTGTTATAGCCTCTGATTGTATACAACGGTTGGGACTGAGGAACTCAGCACGCCGCAAGGCCGGGTACTTGTACCACGTTCGTGCTTAGGATGCTGGCATAA
;
END;

BEGIN CODONS;
CODONPOSSET  CodonPositions (CHARACTERS = Fibulochlamys_chilensis_and_other_basidiomycetes) = 
		N: 1-529;
CODONPOSSET * CodonPositions (CHARACTERS = Fibulochlamys_chilensis_and_other_basidiomycetes) = 
		N: 1-529;
END;