#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 19, 2024; 7:31 GMT

TreeBASE (cc) 1994-2008

Study reference:
Burns J.H., Faden R.B., & Steppan S. 2011. Phylogenetic studies in the Commelinaceae
subfamily Commelinoideae inferred from Nuclear Ribosomal and Chloroplast DNA
Sequences. Systematic Botany, 36(2): 268-276.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S10425]

BEGIN TAXA;
        TITLE  Untitled_Taxa_Block;
        DIMENSIONS NTAX=9;
        TAXLABELS
            Callisia_cordifolia_83197_5S.c
            Callisia_fragrans_93091_5S.cn
            Callisia_graminea_93L1_5S.cn
            Callisia_navicularis_80410_5S.
            Callisia_repens_82291_5S.cn
            Gibasis_consobrina_18843_5S.cn
            Gibasis_karwinskyana_18844_5S.
            Gibasis_pellucida_G02_5S.cn
            Tripogandra_serrulata_UGA01_5S
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M5224]

	TITLE Callisia_and_Gibasis_5S_NTS;
	LINK TAXA = Untitled_Taxa_Block;
	DIMENSIONS NCHAR=230;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                          10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230]
[                                           .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .]
Callisia_cordifolia_83197_5S.c     TGGGAAGTCCTTGTGTTGCATCCCTTTTTGCCGCT------------CGAACTCCATATATCCTATGAGCTAT-CCGC-CTATTATACTACGCCGATA---TATCGGTTT--TTTCCACCGCTC----TAATATATCATC--TCCCCCCACG---AACCCTCCCCGCG----ACGGCATTA-ATACATTTCACAACCATTGTCTTTCGGATGCGATCATACCAGCGCGAC
Callisia_fragrans_93091_5S.cn      TGGGAAGTCCTTGTGTTGCACCCCTTTTT------------------TGCACCCCGTGCATCTCAC---CTATACAAG-AAATACACTCGT-CAAACAGGCTTTTCATCTT-TATGCACTCGTC----AAACACGATTTTCATTTTTTCACTTTCGAACCTCACCTCG----ATAGCCTTATATACATTCACTCACCATTCTCTTTCGGGTGCGATCATACCAGCACGAC
Callisia_graminea_93L1_5S.cn       TGGGAAGTCCTTGTGTTGCATCCCTTTTT-------------------GCCGCGTCTCCATCCTAC---CCACGCCGT-ATAAAAACCCGT-CCTTCA---TAGTGACATCGTATCGAGCGCCT----CCGC---CCTTT--TTACCTCCCGTTCCCCCCCTCCCGCG----ACGCCATTA-GTACGTTTATCGAGCAAACCCTCCCGGATGCGATCATACCAGCACGAC
Callisia_navicularis_80410_5S.     TGGGAAGTCCTTGTGTTGCATCCCTTTTT-------------------GCCCCGACTGCCTCTTAT---CTGTACCGT---AAAAACACGG-T-TTTA---AACCTATCCCGTAAAAAAAACCC----AAGCATTCTTTT--TTTCCCACCTTTCACCCCTCCTCACG----ACGGCATTA-ATACATTTCCCTGCCATACCCTTTCGGATGCGATCATACCAGCACGAC
Callisia_repens_82291_5S.cn        TGGGAAGTCCTTGTGTTGCACCCCTTTTT------------------TGATCCGTGCACGTCTTAC---CTATACCGT-ATATTCCCTCGC-CCAACA------CGATTT--TC-------CTT----TTTTATA--------------ACG---AACC-TCCCCGCG----ATAGCCTTATATACATTTACTTACCATACTCTTTCCGGTGCGATCATACCAGCACTAC
Gibasis_consobrina_18843_5S.cn     TGGGAAGTCCTTGTGTTGCACCCCTTTTTATTTTTTTTCCCAACG---GCTCAATCTGCATATAACCTATAAAAACTT-ACTTTTAATTACCTCTTTAA--TCGCGACCTCCAATTGTATTTTTTCAATTATATGCTGACCGCTACTTTTAGCTGTCTTTTTACCTCGAAACACAGCATAA-CTGCATTTCCTTGCCACACTCTTTCGGGTGCGATCATACCAGCACTAC
Gibasis_karwinskyana_18844_5S.     TGGGAAGTCCTTGTGTTGCACCCCTTTTTATTTTTTTCCCCGATTCTCGCTCAGTGTGCGTGCAACCTATTATATTTTTACTTTTAACTGCCCTTTTAA--TCACCGCCTCTTATTATATTTTT--ACTTGTATATTGACAGCTACTTTTAACTACGTTTTTACCTCGAGCGACAGCATAA-CTACATTTCCTGACTATACTCTTTCGGGTGCGATCATACCAGCACGAC
Gibasis_pellucida_G02_5S.cn        TGGGAAGTCCTTGTGTTGCACCCCTTCTTATTTTTTTCCCCAACG---ACTCCATGCGCATATTACCTATAAAACCTT-ACTTTTAATTACCTTTTTAA--TCACGACTCCTAATTGCATTTCTT--TTTATGTATTGACCGCTACTCTTAACTTACTTTTTACCTCCAAAGAGAGCATAA-CTATATTTCCTGACCATACTCCTTCGGGTGCGATCATACCAGCACGAC
Tripogandra_serrulata_UGA01_5S     TGGGAAGTCCTTGTGTTGCATCCCTTTTT-------------------GCTACCCGTCCATCC-AC---CTATTTTTT-ATACGACGGCGCCGATATA---TCTTTGCCCCGGTTAAACAACGC----CGATATATTTAT--ATTTCCCCCT---ATTTTCCCACACGGTATATAGC-TTAAATATATTTCACGAATGTACTCTTACGGATGCGATCATACCAGCGCGAC
;
END;