#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 19, 2024; 7:33 GMT TreeBASE (cc) 1994-2008 Study reference: Burns J.H., Faden R.B., & Steppan S. 2011. Phylogenetic studies in the Commelinaceae subfamily Commelinoideae inferred from Nuclear Ribosomal and Chloroplast DNA Sequences. Systematic Botany, 36(2): 268-276. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S10425] BEGIN TAXA; TITLE Untitled_Taxa_Block; DIMENSIONS NTAX=6; TAXLABELS Murdannia_acutifolia Murdannia_bracteata Murdannia_keisak Murdannia_nudiflora Murdannia_simplex_1 Murdannia_simplex_2 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M5227] TITLE Murdannia_5S_NTS; LINK TAXA = Untitled_Taxa_Block; DIMENSIONS NCHAR=668; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Murdannia_acutifolia TCCCTTTTCTCGTGC?AT?TTTTTGGCCGCTCGCGTCGAC?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GGAATAGTAAAATGGCCATAACTTTTAGCACGGTTATCGGAACGGGACGTTCTACCCCAATCCGGAAAGGTCACTGCGAGGCCCACGAGA?ACACGATTGACCTATGGTCCATCGTGAT??TTTCGGAGCC?AAAAAAAGATCGTTTCGGGCGTTTTCGGCCCCGTTTACCGATGCGAGGCCGGATTACCGCGAAAATTCGATACATTTTGCTCCGAAAGAGGCACTCATGCACG?CACGGAACCGGACGTTCCTTCATGTGGCGTGTGACCTCGGCTCGGCACGATTCCGTACGCGTTTCTTCCTCTGCGTTCGTCC?GCGTT?CCCTCGTAGACGCCTCAAGTAGCTTTGTGGACCATCACTTGTCGGA Murdannia_bracteata TCACATTTTT?GTATAATATTTTTTGCCGTTCTCGTCGACTTCGCGTTAGAATGATGGCAACATATGTATGCACCCGGTTGAGCCTCAAGTACCTTCGTGTATCAATCCCTTTCGGATGTGATCATACCAGCACTAACGCACCGGATCCCATCAGAACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGTCCCTCTGGGAAGTCCTCTTGTTGCTTTCCTTTTTTGTATAATATTTTTTGCCGTTCTCGTCGACTTCGCGGTAGAATGATGGCAACATATGTA???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????--------TGCGCCCGGTTGAGCCTCAAGTACCTTCGTGTATCAATACCTTTCGGA Murdannia_keisak CCCCTTTTTG?GCGCGAC?CGGGTAATCG??CGGAAGGTC?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????AGAATAGTAAAATAGCCATAACTCTTTTCACGCTTATCGGAACGAGACGATCTACCCCATTCCGGAAAGCTCGTCGCAGGCCCCATCTCTTAAACGATGGACCTACGGTCCATCGTGGAGGTTTTGAGATCCCAAAATCGATCGTTTTGGCCTATTTCGGATTGGTTTTTCGTTACGCATTT???TTTTTTTGCCAACTCA???????????TTCGTAA????CGCGCACGAAAAATACAAAGCACGACATTCTTTCTCTTGCGCCAAACTCACGGCATTGGATCGCTCG???CACATTGGAGAGAGATAACGTGTC??GCGTTGTTCCCTCCCATGGAACAAGTACCGTCTGCGAACAATGGACTTCGGG Murdannia_nudiflora TCCC?TTTTT?GCTT??CCCTTTTTGCCGTTCGCATCGCCTTCTTGCT????CGTTCGCGT????????TGCGCCTGTTGTAGCGTCAAGTACCTACGTGTATCAACTTACTTCGGATGCGATCATACCAGCACGAC???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????--------???????????????????????????????????????????????? Murdannia_simplex_1 TCCCTTTTTT?GTGC?AT?TTTTTTGCCGTTCGCGTCGAC?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GGAATAGTAAAATGGCCATAACTTTTGGCACGGTTATCGGAACGGGACGTTCTACCCCAATCCGGAAAGCTCACCGCGGGCCCCACGACG?GCACGACTGACCTTTGGTCCGTCGTGGT??TTTCCGAGCCCAAAAAAAGCACATTACGGGCCCTTCCGGGCCCGTTTACCGATGCGAGTCCGGATTTCCGCGAAAATTCGATGTATTTTGCTCCGAAAGCGTCGCTCGCGACCG?CACGGAACCGGACGTGCCGACATGCGACGTGTGGCCGCGGCTCGGCACGATTCGGTACGCGTTTCTTTGCATTCGTTCGTCCCGCGTTCCCCCCGCGGACGCCACAAGTTCCTGTGTCGACCATCTTCCTTCGGA Murdannia_simplex_2 TCCCTTTTTT?GTGC?AT?TTTTTTGCCGTTCGCGTCGAC?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GGAATAGTAAAATGGCCATAACTTTTACCACGGTTATCGGAACGGGACGTTCTACCCCAATACGGAAAGCTCTCCGCGGGCCCCTCCACA?ACACGACTGACCCTTGGTCCGTCGTGGT??TTTCTGAGCCCAAAAAATGCACATTTCGGGCCTTTCCGGGCCCGTTTACCGACGCGAGTCCGGATTCCCGCGAAAATTGGGTGTATTTTGCTCCGAAAGCGTCGCTCGCGACCG?CACGGAACCGGACGTGCCGACAGGCGACGTGGGACCGCGGCTCCGCACGATTCGGTACGCGTTTCTTTGCATTCGTTCGTCCCGCGTTTCCCCCGCGGACGCCACAAGTACCTGTGTCGGCCATCACCCTTCGAA ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = Murdannia_5S_NTS) = N: 1-668; CODONPOSSET CodonPositions (CHARACTERS = Murdannia_5S_NTS) = N: 1-668; END;