TreeBASE Search-Matrix 52679 of study 23717

@ARTICLE{TreeBASE2Ref29118, author = {Steffen Bien and Christian Kraus and Ulrike Damm}, title = {Novel collophorina-like genera and species from Prunus trees and vineyards in Germany}, year = {2020}, keywords = {Collophora, morphology, multi-locus phylogeny, new taxa, species diversity, systematics}, doi = {10.3767/persoonia.2020.45.02}, url = {http://}, pmid = {}, journal = {Persoonia}, volume = {45}, number = {}, pages = {46--67}, abstract = {Strains with a yeast-like appearance were frequently collected in two surveys on the biodiversity of fungi in Germany, either associated with necroses in wood of Prunus trees in orchards in Saxony, Lower Saxony and Baden-W?rttemberg or captured in spore traps mounted on grapevine shoots in a vineyard in Rhineland-Palatinate. The morphology of the strains was reminiscent of the genus Collophorina: all strains produced aseptate conidia on integrated conidiogenous cells directly on hyphae, on discrete phialides, adelophialides and by microcyclic conidiation, while in some strains additionally endoconidia or conidia in conidiomata were observed. Blastn searches with the ITS region placed the strains in the Leotiomycetes close to Collophorina spp. Analyses based on morphological and multi-locus sequence data (LSU, ITS, EF-1α, GAPDH) revealed that the 152 isolates from wood of Prunus spp. belong to five species including C. paarla, C. africana and three new species. A further ten isolates from spore traps belonged to seven new species, of which one was isolated from Prunus wood as well. However, a comparison with both LSU and ITS sequence data of these collophorina-like species with reference sequences from further Leotiomycetes revealed the genus Collophorina to be polyphyletic and the strains to pertain to several genera within the Phacidiales. Collophorina paarla and C. euphorbiae are transferred to the newly erected genera Pallidophorina and Ramoconidiophora, respectively. The new genera Capturomyces, Variabilispora and Vexillomyces are erected to accommodate five new species isolated from spore traps. In total nine species were recognised as new to science and described as Collophorina badensis, C. germanica, C. neorubra, Capturomyces funiculosus, Ca. luteus, Tympanis inflata, Variabilispora flava, Vexillomyces palatinus and V. verruculosus.} }

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Matrix 52679 of Study 23717

Citation title: "Novel collophorina-like genera and species from Prunus trees and vineyards in Germany".

Study name: "Novel collophorina-like genera and species from Prunus trees and vineyards in Germany".

This study is part of submission 23717 (Status: Published).

Matrices

Title: Collophorina-like genera BI LSU ITS TEF GAP

Rows

Taxon Label	Row Segments	Characters 1?–30
Collophorina hispanica CBS_128568	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Collophorina hispanica CBS_128566	(none)	------------------------------
Collophorina badensis GLMC_1637	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Collophorina badensis GLMC_1639	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Collophorina germanica GLMC_1445	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Collophorina germanica GLMC_1769	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Collophorina badensis GLMC_1684	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Collophorina africana CBS_120872	(none)	--GGAGGAAAAGAAACCAACAGGGATTGCC
Collophorina africana GLMC_1736	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Collophorina africana GLMC_1777	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Collophorina badensis GLMC_1844	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Collophorina badensis GLMC_1546	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Collophorina badensis GLMC_1686	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Collophorina africana CBS_120879	(none)	--GGAGGAAAAGAAACCAACAGGGATTGCC
Collophorina africana GLMC_462	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Collophorina africana GLMC_464	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Collophorina africana GLMC_466	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Collophorina africana GLMC_600	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Collophorina africana GLMC_551	(none)	--GGAGGAAAAGAAACCAACAGGGATTGCC
Collophorina rubra CBS_120873	(none)	--GGAGGAAAAGAAACCAACAGGGATTGCC
Collophorina neorubra GLMC_1587	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Collophorina neorubra GLMC_929	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Collophorina neorubra GLMC_1669	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Collophorina rubra CBS_121441	(none)	--GGAGGAAAAGAAACCAACAGGGATTGCC
Collophorina neorubra GLMC_1588	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Capturomyces funiculosus GLMC_1846	(none)	-------------------CAGGGATTGCC
Capturomyces funiculosus GLMC_1848	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Capturomyces luteus GLMC_1842	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Ramoconidiophora euphorbiae IBRC.M_30208	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Ramoconidiophora euphorbiae CBS_141018	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Pallidophorina paarla CBS_120877	(none)	--GGAGGAAAAGAAACCAACAGGGATTGCC
Pallidophorina paarla GLMC_452	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Pallidophorina paarla GLMC_1497	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Pallidophorina paarla GLMC_1230	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Pallidophorina paarla GLMC_892	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Pallidophorina paarla GLMC_791	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Pallidophorina paarla GLMC_1282	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Pallidophorina paarla CBS_120878	(none)	--GGAGGAAAAGAAACCAACAGGGATTGCC
Pallidophorina paarla GLMC_780	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Collophorina aceris PC23	(none)	------------------------------
Vexillomyces palatinus GLMC_1852	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Vexillomyces verruculosus GLMC_1838	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Vexillomyces verruculosus GLMC_1854	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Vexillomyces verruculosus GLMC_1840	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Variabilispora flava GLMC_1858	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Tympanis inflata GLMC_1856	(none)	GCGGAGGAAAAGAAACCAACAGGGATTGCC
Cadophora luteo-olivacea CBS_141.41	(none)	GCGGAGGAAAAGAAACCAACAGGGATTACC

Columns

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