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Matrix 53686 of Study 25209
Citation title: "Organellomic data sets confirm a cryptic consensus on (unrooted) land-plant relationships, and provide new insights into bryophyte molecular evolution".
Study name: "Organellomic data sets confirm a cryptic consensus on (unrooted) land-plant relationships, and provide new insights into bryophyte molecular evolution".
This study is part of submission 25209
(Status: Published).
Matrices
Title: Bryophyte plastid AA
Rows
| Taxon Label | Row Segments | Characters 1?–30 |
|---|---|---|
| Mesostigma viride NC002186 | (none) | ------------------------------ |
| Chlorokybus atmophyticus NC008822 | (none) | MSLLDWFDDQRKLK-LLTA----------- |
| Chara vulgaris NC008097 | (none) | MSLVDWFEEKRKLK-LLTT----------- |
| Chaetosphaeridium globosum NC004115 | (none) | MSLVDWFEEKRRLK-LLTT----------- |
| Zygnema circumcarinatum NC008117 | (none) | MSLVDWFEEKRRLK-LLTT----------- |
| Leiosporoceros dussii ANON | (none) | ------------------------------ |
| Anthoceros formosae NC004543 | (none) | MSLMNWFEDRRKFSGLIGAF---IEKATKG |
| Anthoceros agrestis TWUW | (none) | MSLMNWFEDRRKFSGLIGAF---IEKATKG |
| Anthoceros agrestis BSNI | (none) | MSLMNWFEDRRKFSGLIGAF---IEKATKG |
| Paraphymatoceros hallii FAJB | (none) | MSLMNWFEDKRKFSGLIGAF---IEKATKG |
| Phaeoceros carolinianus WCZB | (none) | MSLMNWFEDKRKFSGLIGAF---IEKATKG |
| Phaeoceros carolinianus WEEQ | (none) | MSLMNWFEDKRKFSGLIGAF---IEKATKG |
| Phaeomegaceros coriaceus AKXB | (none) | ------------------------------ |
| Megaceros flagellaris UCRN | (none) | TSLTNWFEDKRKFSGLIGAF---IEKATKG |
| Nothoceros aenigmaticus NC020259 | (none) | TSPTNWFEDKRKFSGLIGAS---TEKATKG |
| Nothoceros aenigmaticus DXOU | (none) | ------------------------------ |
| Nothoceros vincentianus TCBC | (none) | ------------------------------ |
| Treubia lacunosa Chang_&_Graham_2011 | (none) | ------------------------------ |
| Treubia lacunosa VHQW | (none) | ------------------------------ |
| Treubia lacunosa AGNC | (none) | ------------------------------ |
| Haplomitrium hookeri Chang_&_Graham_2011 | (none) | ------------------------------ |
| Blasia pusilla Villarreal_et_al_2015 | (none) | ------------------------------ |
| Sphaerocarpos texanus HERT | (none) | ------------------------------ |
| Lunularia cruciata TXVB | (none) | ------------------------------ |
| Marchantia paleacea NC001319 | (none) | MSLMNWFEDKRRFGGLIGAF---IEKATKG |
| Marchantia polymorpha JPYU | (none) | ------------------------------ |
| Marchantia emarginata TFYI | (none) | ------------------------------ |
| Marchantia paleacea LC035012 | (none) | MSLMNWFEDKRRFGGLIGAF---IEKATKG |
| Marchantia paleacea IHWO | (none) | ------------------------------ |
| Marchantia paleacea HMHL | (none) | ------------------------------ |
| Conocephalum conicum ILBQ | (none) | ------------------------------ |
| Ricciocarpos natans WJLO | (none) | ------------------------------ |
| Dumortiera hirsuta | (none) | MSLMNWFEDKRRFGGLIGAF---IEKATKG |
| Pellia endiviifolia NC019628 | (none) | MSLMNWFEDKRRFGGLIGAF---IEKATKG |
| Pellia neesiana JHFI | (none) | ------------------------------ |
| Pellia sp PIUF | (none) | ----------------------------KG |
| Pallavicinia lyellii | (none) | MSLMNWFEDKRRFGGLIGAF---IEKATKG |
| Pallavicinia lyellii YFGP | (none) | ------------------------------ |
| Pleurozia purpurea Chang_&_Graham_2011 | (none) | ------------------------------ |
| Metzgeria crassipilis NRWZ | (none) | ------------------------?KATKG |
| Aneura mirabilis NC010359 | (none) | MSPMNWFEDKRRFGGLIGAF---IEKATKG |
| Ptilidium pulcherrimum NC015402 | (none) | MSLMNWFEDKRRFGGLIGAF---IEKATKG |
| Ptilidium pulcherrimum HPXA | (none) | ------------------------------ |
| Porella cordaeana | (none) | MSLMNWFEDKRRFGGLIGAF---IEKATKG |
| Porella pinnata UUHD | (none) | ------------------------------ |
| Porella navicularis KRUQ | (none) | ------------------------------ |
| Radula lindenbergiana BNCU | (none) | KPLMNWFEDKRRFGGLIGAF---IEKATKG |
| Frullania sp TGKW | (none) | ------------------------------ |
| Lejeunea patens | (none) | MSLMNWFDDKRKFGGLIGAF---IEKATKG |
| Schistochila sp LGOW | (none) | ------------------------------ |
| Herbertus stramineus | (none) | MSLMNWFEDKRRFGGLIGAF---IEKATKG |
| Bazzania trilobata WZYK | (none) | ------------------------------ |
| Odontoschisma prostratum YBQN | (none) | ------------------------------ |
| Barbilophozia barbata OFTV | (none) | ------------?GGLIGAF---IEKATKG |
| Scapania nemorea IRBN | (none) | ------------------------------ |
| Calypogeia fissa RTMU | (none) | ------------------------------ |
| Mylia taylorii | (none) | MSLMNWFEDKRRFGGLIGAF---IEKATKG |
| Takakia lepidozioides NC028738 | (none) | ---MNRFEDKRRFGGLIGAF---IEKATKG |
| Takakia lepidozioides | (none) | MSLMNRFEDKRRFGGLIGAF---IEKATKG |
| Takakia lepidozioides SKQD | (none) | MSLMNWFEDKRRFGGLIGAF---IEKATKG |
| Takakia ceratophylla Chang_&_Graham_2011 | (none) | ------------------------------ |
| Eosphagnum rigescens KU725456 | (none) | MSLMNWFEDKRRFGGLIGAL---IEKATKG |
| Flatbergium sericeum KU725458 | (none) | MSLMNWFEDKRRFGGLIGAL---IEKATKG |
| Flatbergium novocaledoniae KU725454 | (none) | MSLMNWFEDKRRFGGLIGAL---IEKATKG |
| Sphagnum australe KU725452 | (none) | MSLMNWFEDKRRFGGLIGAL---IEKATKG |
| Sphagnum compactum KU725453 | (none) | MSLMNWFEDKRRFGGLIGAL---IEKATKG |
| Sphagnum orientale KU725447 | (none) | MSLMNWFEDKRRFGGLIGAL---IEKATKG |
| Sphagnum riparium KU725448 | (none) | MSLMNWFEDKRRFGGLIGAL---IEKATKG |
| Sphagnum strictum KU725450 | (none) | MSLMNWFEDKRRFGGLIGAL---IEKATKG |
| Sphagnum wulfianum KU725459 | (none) | MSLMNWFEDKRRFGGLIGAL---IEKATKG |
| Sphagnum palustre | (none) | MSLMNWFEDKRRFGGLIGAL---IEKATKG |
| Sphagnum warnstorfii | (none) | MSLMNWFEDKRRFGGLIGAL---IEKATKG |
| Sphagnum lescurii GOWD | (none) | ------------------------------ |
| Sphagnum palustre RCBT | (none) | MSLMNWFEDKRRFGGLIGAL---IEKATKG |
| Sphagnum recurvum UHLI | (none) | ------------------------------ |
| Andreaeobryum macrosporum | (none) | ------------------------------ |
| Andreaea nivalis | (none) | MSLMNWFEDKRRFGGLIGAF---IEKATKG |
| Andreaea rothii | (none) | MSLMNWFEDKRRFGGLIGAF---IEKATKG |
| Andreaea wilsonii | (none) | MSLMNWFEDKRRFGGLIGAF---IEKATKG |
| Andreaea rupestris WOGB | (none) | ------------------------?KATKG |
| Tetraphis pellucida NC024291 | (none) | MSLMNWFEDKRRFGGLIEAF---IEKATKG |
| Tetraphis pellucida | (none) | MSLMNWFEDKRRFGGLIEAF---IEKATKG |
| Tetraphis pellucida HVBQ | (none) | ------------------------------ |
| Oedipodium griffithianum Chang_&_Graham_2011 | (none) | ------------------------------ |
| Polytrichum juniperinum | (none) | MSLMNWFEDKRRFGGLIGAF---IEKATKG |
| Polytrichum commune SZYG | (none) | ------------------------------ |
| Atrichum angustatum ZTHV | (none) | ------------------------------ |
| Buxbaumia aphylla | (none) | MSLMNWFEDKRRFGGLIGAF---IEKATKG |
| Buxbaumia aphylla HRWG | (none) | ------------------------------ |
| Diphyscium foliosum | (none) | MSLMNWFEDKRRFGGLIGAF---IEKATKG |
| Diphyscium foliosum AWOI | (none) | ------------------------------ |
| Timmia austriaca | (none) | MSLMNWFEDKRRFGGLIGAS---IEKATKG |
| Timmia austriaca ZQRI | (none) | MSLMNWFEDKRRFGGLIGAS---IEKATKG |
| Encalypta streptocarpa KEFD | (none) | ------------------------------ |
| Physcomitrella patens NC005087 | (none) | ---MNWFEDKRRFGGLIGAF---IEKATKG |
| Physcomitrium sp YEPO | (none) | ------------------------------ |
| Scouleria aquatica BPSG | (none) | -?LMNWFEDKRRFGGLIGAS---IEKATKG |
| Racomitrium muticum | (none) | MSLMNWFEDKRRFGGLIGAS---IEKATKG |
| Racomitrium elongatum ABCD | (none) | -------------------------?ATKG |
| Racomitrium varium RDOO | (none) | -------------------------?ATKG |
| Leucobryum albidum VMXJ | (none) | ------------------------------ |
| Leucobryum glaucum RGKI | (none) | ----?WFEDKRRFGGLIGAS---IEKATKG |
| Dicranum scottianum | (none) | MSLMNWFEDKRRFGGLIGAS---IEKATKG |
| Dicranum scoparium NGTD | (none) | MSLMNWFEDKRRFGGLIGAS---IEKATKG |
| Ceratodon purpureus FFPD | (none) | ------------------------------ |
| Syntrichia ruralis NC012052 | (none) | MSLMNWFEDKRRFGGLIGAS---IEKATKE |
| Syntrichia princeps GRKU | (none) | ------------------------------ |
| Hedwigia stellata | (none) | MSLMNWFEDKRRFGGLIGAS---IEKATKG |
| Hedwigia ciliata YWNF | (none) | ------------------------------ |
| Philonotis fontana ORKS | (none) | ------------------------------ |
| Rosulabryum cf capillare_XWHK | (none) | --------------?LIGAS---IEKATKG |
| Bryum argenteum | (none) | MSLMNWFEDKRRFGGLIGAS---IEKATKG |
| Bryum argenteum JMXW | (none) | ------------------------------ |
| Plagiomnium insigne BGXB | (none) | MSLMNWFEDKRRFGGLIGAS---IEKATKG |
| Nyholmiella obtusifolia NC026979 | (none) | MSLMNWFEDKRRFGGLIGAS---IEKATKE |
| Orthotrichum rogeri NC026212 | (none) | MSLMNWFEDKRRFGGLIGAS---IEKATKE |
| Pulvigera lyellii | (none) | MSLMNWFEDKRRFGGLIGAS---IEKATKE |
| Pulvigera lyellii CMEQ | (none) | MSLMNWFEDKRRFGGLIGAS---IEKATKE |
| Aulacomnium heterostichum WNGH | (none) | ------------------------------ |
| Hookeria lucens | (none) | MSLMNWFEDKRRFGGLIGAS---IEKATKE |
| Pseudotaxiphyllum elegans QKQO | (none) | MSLMNWFEDKRRFGGLIGAS---IEKATKG |
| Calliergon cordifolium TAVP | (none) | ------------------------------ |
| Fontinalis antipyretica | (none) | MSLMNWFEDKRRFGGLIGAS---IEKATKG |
| Fontinalis antipyretica DHWX | (none) | ---------------?IGAS---IEKATKG |
| Loeskeobryum brevirostre WSPM | (none) | MSLMNWFEDKRRFGGLIGAS---IEKATKG |
| Rhynchostegium serrulatum JADL | (none) | ------------------------------ |
| Stereodon subimponens LNSF | (none) | MSLMNWFEDKRRFGGLIGAS---IEKATKG |
| Climacium dendroides MIRS | (none) | ------------------------------ |
| Leucodon julaceus IGUH | (none) | MSLMNWFEDKRRFGGLIGAS---IEKATKG |
| Leucodon brachypus ZACW | (none) | MSLMNWFEDKRRFGGLIGAS---IEKATKG |
| Neckera douglasii TMAJ | (none) | MSLMNWFEDKRRFGGLIGAS---IEKATKG |
| Sanionia uncinata NC025668 | (none) | MSLMNWFEDKRRFGGLIGAS---IEKATKG |
| Claopodium rostratum VBMM | (none) | ------------------------------ |
| Anomodon attenuatus QMWB | (none) | ----------?RFGGLIGAS---IEKATKG |
| Thuidium delicatulum EEMJ | (none) | ------------------------------ |
| Isoetes flaccida NC014675 | (none) | ------------------------------ |
| Huperzia lucidula NC006861 | (none) | MSLRDWFEDKRKFGGLVGAL---TEKATKG |
| Ophioglossum californicum NC020147 | (none) | TSLANWFEEKRKFGGLIGAF---IEKATKG |
| Psilotum nudum NC003386 | (none) | MSLINWFEDKRKFGGLIGAF---IEKATKG |
| Equisetum hyemale 020146 | (none) | TSLKDWFEQKQKLYDSVGDD---LEEV-KV |
| Angiopteris evecta NC008829 | (none) | MSLINWFEEKRKFGGLIGAF---IEKATKG |
| Adiantum capillusveneris NC004766 | (none) | TSVINWFEDRQKFGGLIGAF---LEEATRS |
| Zamia furfuracea NC026040 | (none) | MSLKEWFEERRKISGLIEDL---IERTSKD |
| Ginkgo biloba NC016986 | (none) | MSLKEWFEERRKISGLIEDL---IGKASKD |
| Podocarpus totara NC020361 | (none) | MTLREWHEERRRINRVIEDL---TEKANHL |
| Pinus contorta NC011153 | (none) | MSIKEWFEDKRKITALLKNS---VERDSKD |
| Araucaria heterophylla NC026450 | (none) | ------------------------------ |
| Taxus mairei NC020321 | (none) | ------------------------------ |
| Gnetum montanum NC021438 | (none) | ------------------------------ |
| Amborella trichopoda NC005086 | (none) | MLSNEELEHKCELSKSMDSLG-LIGNTGAG |
| Nymphaea alba NC006050 | (none) | MLSNEDLGRRCGLS---ASLG-PIGNTSGS |
| Illicium oligandrum NC009600 | (none) | MLSNEELEHKCGLSKSADSLG-PIGNASGS |
| Chloranthus spicatus NC009598 | (none) | MLSNEELEHRWGLSKSMESLG-PIGNTRGS |
| Magnolia sinica NC023241 | (none) | ILSNEELEHRCGLSKSMDSLGCPIGNTSGS |
| Acorus americanus NC010093 | (none) | ------------------------------ |
| Zea mays NC001666 | (none) | ------------------------------ |
| Ceratophyllum demersum NC009962 | (none) | ILSNEELEHRCRLSKSMARPR-PIGNTNGS |
| Vitis vinifera NC007957 | (none) | MLSNEKLEYRCGLSKSTDSPD-PIENTSGS |
| Nicotiana tabacum NC001879 | (none) | MLFKKEFERRCGLNKSMGSLG-PIENTN-- |
Columns
None of the columns has a description.
