#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 22, 2024; 0:51 GMT TreeBASE (cc) 1994-2008 Study reference: Huang D., Fitzhugh K., & Rouse G. 2011. Inference of phylogenetic relationships within Fabriciidae (Sabellida, Annelida) using molecular and morphological data. Cladistics, 27(4): 356–379. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S10868] BEGIN TAXA; TITLE Fabriciidae; DIMENSIONS NTAX=78; TAXLABELS Amphicorina_mobilis Augeneriella_basifurcata Augeneriella_hummelincki Augeneriella_lagunari Augeneriella_mossambica Augeneriella_pectinata Bansella_oregonica Brifacia_metastellaris Echinofabricia_alata Echinofabricia_dubia Echinofabricia_goodhartzorum Fabricia_stellaris Fabricinuda_bikinii Fabricinuda_limnicola Fabricinuda_longilabrum Fabricinuda_pseudocollaris Fabricinuda_pseudopalpa Fabricinuda_rosaelenae Fabricinuda_sp._Australia Fabricinuda_trilobata Fabriciola_baltica Fabriciola_liguronis Fabriciola_minuta Fabriciola_parvus Manayunkia_aestuarina Manayunkia_athalassia Manayunkia_baicalensis Manayunkia_brasiliensis Manayunkia_mizu Manayunkia_polaris Manayunkia_speciosa Monroika_africana Novafabricia_bilobata Novafabricia_brunnea Novafabricia_chilensis Novafabricia_exiguus Novafabricia_gerdi Novafabricia_guana Novafabricia_infratorquata Novafabricia_labrus Novafabricia_sp._Australia Novafabricia_tenuiseta Novafabricia_triangularis Parafabricia_ventricingulata Pseudoaugeneriella_bansei Pseudoaugeneriella_brevirama Pseudoaugeneriella_nigra Pseudoaugeneriella_unirama Pseudofabricia_aberrans Pseudofabriciola_analis Pseudofabriciola_australiensis Pseudofabriciola_californica Pseudofabriciola_capensis Pseudofabriciola_filamentosa Pseudofabriciola_filaris Pseudofabriciola_incisura Pseudofabriciola_longa Pseudofabriciola_longipyga Pseudofabriciola_peduncula Pseudofabriciola_quasiincisura Pseudofabriciola_rousei Pseudofabriciola_sofla Raficiba_barryi Romanchella_quadricostalis Rubifabriciola_berkeleyi Rubifabriciola_brevibranchiata Rubifabriciola_cri Rubifabriciola_flammula Rubifabriciola_ghardaqa Rubifabriciola_markginsbergi Rubifabriciola_mediaseta Rubifabriciola_phuketensis Rubifabriciola_rubra Rubifabriciola_sp._USA Rubifabriciola_tonerella Sabella_spallanzanii Salmacina_sp. Serpula_vermicularis ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M6643] TITLE Morphology_data; LINK TAXA = Fabriciidae; DIMENSIONS NCHAR=50; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3 4 5 6 7" MISSING=? GAP= -; CHARSTATELABELS 1 Tube / sediment calcareous, 2 Radioles / all_largely_similar _one_radiole_as_an_operculum, 3 Number_of_radioles / 3_or_more_pairs_ 2_pairs, 4 Displaced_pinnules / absent_ present_, 5 Dorsalmost_margins_of_branchial_lobes / smooth as_ventral_filamentous_appendages, 6 Interior_of_ventral_filamentous_appendages / with_large_blood_vessel with_very_small_blood_vessel, 7 Ventral_filamentous_appendages / unbranched branched, 8 Dorsal_lips / present absent, 9 Dorsal_lip_shape / 'well-developed, triangular ridges with dorsal margins well separated from proximalmost pinnules of dorsal radioles ' 'dorsal margins fused with proximalmost radioles to some extent, forming low to moderately narrow ridges', 10 Ventral_margin_of_branchial_lobe / even slight_flange, 11 Branchial_lobe_shape / wide_and_short_ 'narrow and elongate, and/or with peduncle-like process', 12 Branchial_crown_location / covers_all_of_anterior_peristomium_margin shifted_dorsally_along_anterior_peristomium_margin, 13 'Mid-dorsal collar margin' / separate_ entire_, 14 Anterior_peristomial_ring_collar / ventral_lobe_ membrane_all_around low_ridge, 15 Anterior_peristomial_ring_dimensions / wider_than_long_ at_least_as_wide_as_long, 16 APR_relative_to_PPR / distinctly_shorter_than_posterior_ring equal_to_posterior_ring_length longer_than_PPR, 17 Thorax / segmental_elements_only thoracic_membrane_fused_to_peristomial_collar, 18 Peristomial_eye_color / red black, 19 Pygidial_eyes / present_ absent, 20 Eyes_in_preservation / persist disappear, 21 Inferior_thoracic_notosetae / all_elongate_narrowly_hooded combination_of_elongate_narrowly_hooded_and_pseudospatulate, 22 Distribution_of_pseudospatulate_setae / 'setigers 2-5 pseudospatulate' 'setigers 2-8 pseudospatulate' 'setigers 3-5 pseudospatulate' 'setigers 3-6 pseudospatulate' 'setigers 3-7 pseudospatulate' 'setigers 3-8 pseudospatulate', 23 Abdominal_neurochaetae / only_narrowly_hooded 'narrowly hooded and ''pin-head''', 24 'Inferior uncini in setigers 2-3' / 'same as in setigers 4-8' enlarged_main_fang, 25 Dentition_above_main_fang_of_thoracic_uncini / series_of_uniformly_small_teeth_ teeth_gradually_decrease_in_size_away_from_main_fang 'large tooth slightly offset from midline, followed by series of smaller teeth', 26 Dentition_of_abdominal_uncini / multiple_rows_of_teeth single_row_of_teeth, 27 Abdominal_uncini_teeth_size / uniform_in_size gradation_in_size_from_proximal_to_distal, 28 Abdominal_uncini_manubrium_length_ / 'Amphicorina-like ' 'short (same length as dentate region)' 'medium (1.5 to 2.5 times longer than dentate region)' 'long (3 times longer than dentate region)', 29 Proximal_end_of_manubrium / slightly_wider_than_dentate_region 2_or_more_times_wider_than_dentate_region, 30 Number_of_abdominal_setigers / 5_or_more 2 3 4, 31 'Body-wall spicules' / absent_ present_, 32 Distribution_of_spermiogenesis / Posterior_thoracic_and_abdominal_setigers 'chaetigers 4-8' 'chaetigers 3-8' 'chaetigers 6-8', 33 Pattern_of_spermiogenesis / tetrads large_clusters_associated_with_central_cytophore, 34 Sperm_duct / paired single, 35 Mode_of_reproduction / broadcasting brooding, 36 Sperm_storage_tissue / epidermal spermathecae, 37 Sperm_storage_position / peristomium crown, 38 Structure_of_spermathecae / simple complex, 39 Pigmentation_of_spermathecae / absent present, 40 Shape_of_sperm_nucleus / spherical elongate, 41 Sperm_nuclear_axis / straight curved, 42 Curvature_of_sperm_nucleus / in_one_plane spiral, 43 Spiral_ridge_in_sperm_nucleus / absent present, 44 Sperm_nuclear_projection / absent present, 45 Shape_of_sperm_nuclear_projection / 'spike-like' 'knob-like' digitiform pointed small_bulge_with_thickened_membrane, 46 Thickening_of_sperm_nuclear_membrane / absent present, 47 Sperm_mitochondrial_sheath / simple_spherical 'Amphicorina-like' elongate_and_thin short_and_thin short_and_thick, 48 'Sperm extra-axonemal sheath' / absent present, 49 'Development of extra-axonemal sheath' / simple_sleeve sleeve_with_marked_ridges regular_projections complex_spiraling_rings undeveloped, 50 Sperm_acrosome / 'small and cap-like' elongate_and_conical flattened_in_one_plane, ; MATRIX [ 10 20 30 40 50] [ . . . . .] Amphicorina_mobilis 00000--00000000000010-0010000000001110010-00-010-1 Augeneriella_basifurcata 0000101001000001010014002002020111101--11101412111 Augeneriella_hummelincki 0000101001000000010013002002120111101--11101412111 Augeneriella_lagunari 00001010010000010100140020010201?????????????????? Augeneriella_mossambica 00001010010000010100140020010201?????????????????? Augeneriella_pectinata 000010100100000101001300200102011110?--11101412111 Bansella_oregonica 00000--00000000001000-002002020211111?11?????????? Brifacia_metastellaris 00000--0000000000100140020010201?????????????????? Echinofabricia_alata 000010000000000000010-0000020311111100111111013100 Echinofabricia_dubia 000010000000000000010-000002031?11110??11111013100 Echinofabricia_goodhartzorum 000010000000000000010-0000020312111100111111013100 Fabricia_stellaris 00000--0000000000100140020020202111111111001214122 Fabricinuda_bikinii 00001001-1010212010015002001020111100--11001414121 Fabricinuda_limnicola 00001001-10002120100150020020201?????????????????? Fabricinuda_longilabrum 00000--0010002120100150020020201?????????????????? Fabricinuda_pseudocollaris 00001001-10002120100150020010201?????????????????? Fabricinuda_pseudopalpa 00000--0010002110100150020010201?????????????????? Fabricinuda_rosaelenae 00001000010102120100140020010201?????????????????? Fabricinuda_sp._Australia 00001001-10102120100150020010201?????????????????? Fabricinuda_trilobata 00001001-1010212010015002001020111101--11001414121 Fabriciola_baltica 000011000000010001000-0010031201?????????????????? Fabriciola_liguronis 000011000000010001000-0010021202111110011101114122 Fabriciola_minuta 000111000000010001000-0010031102111110111101114121 Fabriciola_parvus 000011000000000001100-00100312021110?--11101214131 Manayunkia_aestuarina 00111000000001000110100010030203111110111101114131 Manayunkia_athalassia 00111000000001000110??001002020311111011?????????? Manayunkia_baicalensis 001110000000010001100-001002020311111011?????????? Manayunkia_brasiliensis 0011100000000100011010001002020311111011?????????? Manayunkia_mizu 00111000000001000110100010020203111110111111114131 Manayunkia_polaris 00111000000001000110130010020203?????????????????? Manayunkia_speciosa 001110000000010001100-001002020311111011?????????? Monroika_africana 00111000000001000???12002001010??????????????????? Novafabricia_bilobata 00000--010000000?100120020020201?????????????????? Novafabricia_brunnea 00000--010000000010012002002020111100--11001312131 Novafabricia_chilensis 00000--0100000000100130021110201?????????????????? Novafabricia_exiguus 00000--0100000000100120020020201?????????????????? Novafabricia_gerdi 00000--0100000000100120021110201?????????????????? Novafabricia_guana 00000--0100000010100120020020201?????????????????? Novafabricia_infratorquata 00000--010000001010012002002020111100--11001312131 Novafabricia_labrus 00000--01000000001001300200102021110?--??????????? Novafabricia_sp._Australia 00000--010000001010012002002020111101--110???????? Novafabricia_tenuiseta 00000--01000000001000-0020020201111111111001212142 Novafabricia_triangularis 00000--01000000101001200201202011110?--??????????? Parafabricia_ventricingulata 00000--000000001010014002001020?11111111100121???? Pseudoaugeneriella_bansei 0000100001000000010013002002020??????????????????? Pseudoaugeneriella_brevirama 0000100001000001010013002002020??????????????????? Pseudoaugeneriella_nigra 0000100001000002010013002002020??????????????????? Pseudoaugeneriella_unirama 0000100001000001010013002002020??????????????????? Pseudofabricia_aberrans 000011000000000001000-002002020211?????1100121?130 Pseudofabriciola_analis 00000--01010110001000-0010010201?????????????????? Pseudofabriciola_australiensis 000010000010110001000-0010020201?????????????????? Pseudofabriciola_californica 00000--00010110001000-0020020201?????????????????? Pseudofabriciola_capensis 00000--00010110001000-0020010201?????????????????? Pseudofabriciola_filamentosa 00000--0?010110001000-0010020201?????????????????? Pseudofabriciola_filaris 00000--01010110001000-0010020201?????????????????? Pseudofabriciola_incisura 000010000010110001000-001002020111100--10-01113131 Pseudofabriciola_longa 00000--01010110001000-0010010201?????????????????? Pseudofabriciola_longipyga 00000--01010110001000-0010020201?????????????????? Pseudofabriciola_peduncula 00000--01010110001000-001002020111100--10-01113131 Pseudofabriciola_quasiincisura 000010000010110001000-00100202011110?--10-01113131 Pseudofabriciola_rousei 00000--01010110001000-0010020201?????????????????? Pseudofabriciola_sofla 00000--01010110001000-0010020201?????????????????? Raficiba_barryi 00000--0000000000100110020010203?????????????????? Romanchella_quadricostalis 11000--00000100010110-00000000001011???11000-010-1 Rubifabriciola_berkeleyi 000011000000010000000-1110031201?????????????????? Rubifabriciola_brevibranchiata 000011000000010000000-011003120111101--11001313131 Rubifabriciola_cri 000011000000010000000-101003120111111011?????????? Rubifabriciola_flammula 000011000000010000000-10100312021110?--11001313131 Rubifabriciola_ghardaqa 000011000000010000000-??100?120??????????????????? Rubifabriciola_markginsbergi 000011000000010000000-1010031201?????????????????? Rubifabriciola_mediaseta 000011000000010000000-11100212011110?--11001313131 Rubifabriciola_phuketensis 000011000000010000000-1110031201?????????????????? Rubifabriciola_rubra 000011000000010000000-1010031201?????????????????? Rubifabriciola_sp._USA 000011000000010000000-10100??20??????????????????? Rubifabriciola_tonerella 000011000000010000000-1010021201?????????????????? Sabella_spallanzanii 00000--00000000000110-0010010000000????0--00-000-0 Salmacina_sp. 10000--00000000010110-0000000000001100011000-010-1 Serpula_vermicularis 11000--00000000010110-0000000000000????0--00-000-? ; END;