@ARTICLE{TreeBASE2Ref15670,
author = {J. M. Guillon},
title = {Phylogeny of horsetails (Equisetum) based on chloroplast rps4 gene and adjacent noncoding sequences},
year = {2004},
keywords = {},
doi = {},
url = {},
pmid = {},
journal = {Systematic Botany},
volume = {29},
number = {},
pages = {251--259},
abstract = {Equisetum is a genus of 15 extant species that are the sole surviving representatives of the class Sphenopsida. Chloroplast DNA sequence data were used to examine the monophyly of the two accepted subgenera (Equisetum and Hippochaete) and the putative basal position of Equisetum giganteum. A plastid DNA region that includes rps4 was sequenced for all species of Equisetum. Phylogenetic analyses using parsimony, likelihood or posterior probability criteria, all support the following inferences: (1) Equisetum bogotense is basal within the genus; (2) all other species group in two major sister clades: (i) the rest of subgenus Equisetum (7 species) and (ii) subgenus Hippochaete (7 species). On the basis of the present phylogeny, bisexuality would not be the ancestral state in the Equisetum genus, but characters shared among species of the subgenus Equisetum, such as superficial stomata and protruding antheridia, could be ancestral in the genus.}
}
Matrix 688 of Study 1275
Citation title:
"Phylogeny of horsetails (Equisetum) based on chloroplast rps4 gene and adjacent noncoding sequences".
This study was previously identified under the legacy study ID S964
(Status: Published).
Matrices
Title: noncoding rps4
Description: Legacy TreeBASE Matrix ID = M1597
Rows
Taxon Label |
Row Segments |
Characters 1?–30 |
Equisetum ramosissimum |
(none)
|
TCGGTTCACTCCGATAGCCGGCTTCACTCT |
Equisetum scirpoides |
(none)
|
????????????????GCTGGCTTCT???? |
Equisetum giganteum |
(none)
|
???????????????AGCCGGCTTCACTCT |
Equisetum myriochaetum |
(none)
|
TCGGTTCACTCCGATAGCCGGCTTCACTCT |
Equisetum laevigatum |
(none)
|
TCGGTTCACTCCGATAGCCGGCTTCACTCT |
Equisetum hyemale |
(none)
|
TCGGTTCACTCCGATAGCCGGCTTCACTCT |
Equisetum variegatum |
(none)
|
TCGG?TCACTCCGATAGCCGGCTTCACTCT |
Equisetum sylvaticum |
(none)
|
TCGGTTCACTCCGATAGCAGGCTTCACTCT |
Equisetum telmateia |
(none)
|
TCGGTTCACTCCGATAGCAGGCTTAACTCT |
Equisetum pratense |
(none)
|
TCGGTTCACTCCGATAGCAGGCTTCACTCT |
Equisetum palustre |
(none)
|
TCGGTTCACTCCGATAGCAGGCTTCACTCT |
Equisetum fluviatile |
(none)
|
TCGGTTCACTCCGATAGCAGGCTTCACTCT |
Equisetum diffusum |
(none)
|
TCGGTTCACTCCGATAGCAGGCTTCACTCT |
Equisetum arvense |
(none)
|
TCGGTTCACTCCGATAGCAGGCTTCACTCT |
Equisetum bogotense |
(none)
|
TCGGTTCACTCCGATAGCTGGCTTCACTGT |
Columns
None of the columns has a description.