#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 19, 2024; 10:52 GMT

TreeBASE (cc) 1994-2008

Study reference:
Chen S., Gryzenhout M., Roux J., Xie Y., Wingfield M.J., & Zhou X. 2011. Novel species
of Celoporthe identified from Eucalyptus and Syzygium trees in China and Indonesia.
Mycologia, 103(6): 1384–1410.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S11111]

BEGIN TAXA;
        TITLE  Untitled_Taxa_Block;
        DIMENSIONS NTAX=15;
        TAXLABELS
            Celoporthe_dispersa_CMW9976
            Celoporthe_dispersa_CMW9978
            Celoporthe_eucalypti_CMW26900
            Celoporthe_eucalypti_CMW26908
            Celoporthe_eucalypti_CMW26911
            Celoporthe_eucalypti_CMW26913
            Celoporthe_guangdongensis_CMW12750
            Celoporthe_indonesiensis_CMW_10779
            Celoporthe_indonesiensis_CMW_10780b
            Celoporthe_indonesiensis_CMW_10781c
            Celoporthe_syzygii_CMW24912
            Celoporthe_syzygii_CMW24914
            Celoporthe_syzygii_CMW24917
            Celoporthe_syzygii_CMW34023
            Celoporthe_syzygii_CMW34024
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M7403]

	TITLE 4_2_Celoporthe_ITS_;
	LINK TAXA = Untitled_Taxa_Block;
	DIMENSIONS NCHAR=535;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                               10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530     ]
[                                                .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .     ]
Celoporthe_dispersa_CMW9976             CCCAGATACCCCTATGTGAACTTATACCTTTTTTTAATCGTTGCCTCGGCGTCGAGCCCGGGGG-GACGGGATAGAG--AAATATATTTCTTTTTCCTTCCCCCTCCCCT--GTCA-CCGTGCAAACGGT-TGTTGG-GGGAGCAGGCCCGCCGGCGGCCCATTAAACTCTTTTGTTT-TTAGAACGTATCTCTTCTG---AATTAAAAAAAAAAAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGGGAATTGCAGAATTCAGGGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGAATTCCAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGTTGGGGCACTACCCGTAAAACGGTAAGCCCTGAAATTTAGGGGCGGGCTCGCTAAAACTCTGAGCGTAGTAGTT------TTTCAACCTCGCTTTGGAAGGATTAGCGGTTGCTCTTGCCGTAAAACC
Celoporthe_dispersa_CMW9978             CCCAGATACCCCTATGTGAACTTATACCTTTTTTTAATCGTTGCCTCGGCGTCGAGCCCGGGGG-GACGGGATAGAG--AAATATATTTCTTTTTCCTTCCCCCTCCCCT--GTCA-CCGTGCAAACGGT-TGTTGG-GGGAGCAGGCCCGCCGGCGGCCCATTAAACTCTTTTGTTT-TTAGAACGTATCTCTTCTG---AATTAAAAAAAAAAAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGGGAATTGCAGAATTCAGGGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGAATTCCAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGTTGGGGCACTACCCGTAAAACGGTAAGCCCTGAAATTTAGGGGCGGGCTCGCTAAAACTCTGAGCGTAGTAGTT------TTTCAACCTCGCTTTGGAAGGATTAGCGGTTGCTCTTGCCGTAAAACC
Celoporthe_eucalypti_CMW26900           CCCAGATACCCCTATGTGAACTTATACCTTTTTAAAATCGTTGCCTCGGCGCCGAGCCCGGGGGAGACGGGATATAG--AAATATCTTTTCTTTTCCCGCTCCCCTCCCTTCACCA-CCGTGCAAACGGTGTGTTGGTGGGAGCAGGCCCGCCGGCGGCCCGTTAAACTCTTGTTTTT-AAAAAACGTATCTCTTCTGAGTAATTAAAC--AAAAAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGAATTCCAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTTGGCTTGGTGTTGGGGTACTACCCGTAAAACGGTAGGCCCTGAAATTTAGTGGCGGGCTCGCTAAGACTCTGAGCGTAGTAGTG-TTTTTTCTCAACCTCGCTTTGGAAGGATTAGCGGTTGCTCTTGCCGTAAAACC
Celoporthe_eucalypti_CMW26908           CCCAGATACCCCTATGTGAACTTATACCTTTTTAAAATCGTTGCCTCGGCGCCGAGCCCGGGGGAGACGGGATATAG--AAATATCTTTTCTTTTCCCGCTCCCCTCCCTTCACCA-CCGTGCAAACGGTGTGTTGGTGGGAGCAGGCCCGCCGGCGGCCCGTTAAACTCTTGTTTTT-AAAAAACGTATCTCTTCTGAGTAATTAAAC--AAAAAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGAATTCCAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTTGGCTTGGTGTTGGGGTACTACCCGTAAAACGGTAGGCCCTGAAATTTAGTGGCGGGCTCGCTAAGACTCTGAGCGTAGTAGTG-TTTTTTCTCAACCTCGCTTTGGAAGGATTAGCGGTTGCTCTTGCCGTAAAACC
Celoporthe_eucalypti_CMW26911           CCCAGATACCCCTATGTGAACTTATACCTTTTTAAAATCGTTGCCTCGGCGCCGAGCCCGGGGGAGACGGGATATAG--AAATATCTTTTCTTTTCCCGCTCCCCTCCCTTCACCA-CCGTGCAAACGGTGTGTTGGTGGGAGCAGGCCCGCCGGCGGCCCGTTAAACTCTTGTTTTT-AAAAAACGTATCTCTTCTGAGTAATTAAAC--AAAAAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGAATTCCAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTTGGCTTGGTGTTGGGGTACTACCCGTAAAACGGTAGGCCCTGAAATTTAGTGGCGGGCTCGCTAAGACTCTGAGCGTAGTAGTG-TTTTTTCTCAACCTCGCTTTGGAAGGATTAGCGGTTGCTCTTGCCGTAAAACC
Celoporthe_eucalypti_CMW26913           CCCAGATACCCCTATGTGAACTTATACCTTTTTAAAATCGTTGCCTCGGCGCCGAGCCCGGGGGAGACGGGATATAG--AAATATCTTTTCTTTTCCCGCTCCCCTCCCTTCACCA-CCGTGCAAACGGTGTGTTGGTGGGAGCAGGCCCGCCGGCGGCCCGTTAAACTCTTGTTTTT-AAAAAACGTATCTCTTCTGAGTAATTAAAC--AAAAAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGAATTCCAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTTGGCTTGGTGTTGGGGTACTACCCGTAAAACGGTAGGCCCTGAAATTTAGTGGCGGGCTCGCTAAGACTCTGAGCGTAGTAGTG-TTTTTTCTCAACCTCGCTTTGGAAGGATTAGCGGTTGCTCTTGCCGTAAAACC
Celoporthe_guangdongensis_CMW12750      CCCAGATACCCCTATGTGAACTTATACCTTTTTAAAATCGTTGCCTCGGCGCCGAGCCCGGGGGAGACGGGATATAG--AAATATCTTTTCTTTTCCCGCTCCCCTCCCTTCACCACCCGTGCAAACGGTGTGTTGGTGGGAGCAGGCCCGCCGGCGGCCCGTTAAACTCTTGTTTTTAAAAAAACGTATCTCTTCTGAGTAATTAAAC--AAAAAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGAATTCCAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTTGGCTTGGTGTTGGGGTACTACCCGTAAAACGGTAGGCCCTGAAATTTAGTGGCGGGCTCGCTAAGACTCTGAGCGTAGTAGTGTTTTTTTCTCAACCTCGCTTTGGAAGGATTAGCGGTTGCTCTTGCCGTAAAACC
Celoporthe_indonesiensis_CMW_10779      CCCAGATACCCCTATGTGAACTTATACCTTTTTAAAATTGTTGCCTCGGCGCCGAGCCCGGGGGAGACGGGATATAGAAAAATATCTTTTCTTTTCCCGCTCCCCTCCCT-CACCA-CCGTGCAAACGGTGTGTTGGTGGGAGCAGGCCCGCCGGCGGCCCGTTAAACTCTTGTTTTT--AAAAACGTATCTCTTCTGAGTAATTAAACAAAAAAAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGAATTCCAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTTGGCTTGGTGTTGGGGTACTACCCCTAAAACGGTGGGCCCTGAAATTTAGTGGCGGGCTCGCTAAGACTCTGAGCGTAGTAGTG-TTTTTTCTCAACCTCGCTTTGGAAGGATTAGCGGTTGCTCTTGCCGTAAAACC
Celoporthe_indonesiensis_CMW_10780b     CCCAGATACCCCTATGTGAACTTATACCTTTTTAAAATTGTTGCCTCGGCGCCGAGCCCGGGGGAGACGGGATATAGAAAAATATCTTTTCTTTTCCCGCTCCCCTCCCTTCACCA-CCGTGCAAACGGTGTGTTGGTGGGAGCAGGCCCGCCGGCGGCCCGTTAAACTCTTGTTTTT--AAAAACGTATCTCTTCTGAGTAATTAAACAAAAAAAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGAATTCCAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTTGGCTTGGTGTTGGGGTACTACCCCTAAAACGGTAGGCCCTGAAATTTAGTGGCGGGCTCGCTAAGACTCTGAGCGTAGTAGTG-TTTTTTCTCAACCTCGCTTTGGAAGGATTAGCGGTTGCTCTTGCCGTAAAACC
Celoporthe_indonesiensis_CMW_10781c     CCCAGATACCCCTATGTGAAATTATACCTTTTTAAAATTGTTGCCTTGGCGCCGAGCCC-----AGACGGGATATAGAAAAATATCTTTTCTTTTCCCGCTCCCCTCCCTTCACCA-CCGTGCAAACGGTGTGTTGGTGGGAGCAGGCCCGCCGGCGGCCCGTTAAAATTTTGTTTTT--AAAAAAGTATCTCTTCTGAGTAATTAAACAAAAAAAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGATTTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGAATTCCAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTTGGCTTGGTGTTGGGGTACTACCCGTAAAACGGTAGGCCCTGAAATTTAGTGGCGGGCTCGCTAAGACTCTGAGCGTAGTAGTG-TTTTTTCTCAACCTCGCTTTGGAAGGATTAGCGGTTGCTCTTGCCGTAAAACC
Celoporthe_syzygii_CMW24912             CCCAGATACCCCTATGTGAACTTATACCTTTTTAAAATCGTTGCCTCGGCGCCGAGCCCGGGGGAGACGGGATATAG--AAATATCTTTTTCTTTTCCCCTCCCCTCCCTTCACCACCCGTGCAAACGGT-TGTTGGTGGGAGCAGGCCCGCCGGCGGCCCGTTAAACTCTTGTTTTT--AAAAACGTATCTCTTCTGAGTAATTAAAC-AAAAAAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGAATTCCAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTTGGCTTGGTGTTGGGGTACTACCCGTAAAACGGTAGGCCCTGAAATTTAGTGGCGGGCTCGCTAAGACTCTGAGCGTAGTAGTG-TTTTTTCTCAACCTCGCTTTGGAAGGATTAGCGGTTGCTCTTGCCGTAAAACC
Celoporthe_syzygii_CMW24914             CCCAGATACCCCTATGTGAACTTATACCTTTTTAAAATCGTTGCCTCGGCGCCGAGCCCGGGGGAGACGGGATATAG--AAATATCTTTTTCTTTTCCCCTCCCCTCCCTTCACCACCCGTGCAAACGGT-TGTTGGTGGGAGCAGGCCCGCCGGCGGCCCGTTAAACTCTTGTTTTT--AAAAACGTATCTCTTCTGAGTAATTAAAC-AAAAAAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGAATTCCAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTTGGCTTGGTGTTGGGGTACTACCCGTAAAACGGTAGGCCCTGAAATTTAGTGGCGGGCTCGCTAAGACTCTGAGCGTAGTAGTG-TTTTTTCTCAACCTCGCTTTGGAAGGATTAGCGGTTGCTCTTGCCGTAAAACC
Celoporthe_syzygii_CMW24917             CCCAGATACCCCTATGTGAACTTATACCTTTTTAAAATCGTTGCCTCGGCGCCGAGCCCGGGGGAGACGGGATATAG--AAATATCTTTTTCTTTTCCCCTCCCCTCCCTTCACCACCCGTGCAAACGGT-TGTTGGTGGGAGCAGGCCCGCCGGCGGCCCGTTAAACTCTTGTTTTT--AAAAACGTATCTCTTCTGAGTAATTAAAC-AAAAAAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGAATTCCAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTTGGCTTGGTGTTGGGGTACTACCCGTAAAACGGTAGGCCCTGAAATTTAGTGGCGGGCTCGCTAAGACTCTGAGCGTAGTAGTG-TTTTTTCTCAACCTCGCTTTGGAAGGATTAGCGGTTGCTCTTGCCGTAAAACC
Celoporthe_syzygii_CMW34023             CCCAGATACCCCTATGTGAACTTATACCTTTTTAAAATCGTTGCCTCGGCGCCGAGCCCGGGGGAGACGGGATATAG--AAATATCTTTTTCTTTTCCCCTCCCCTCCCTTCACCACCCGTGCAAACGGT-TGTTGGTGGGAGCAGGCCCGCCGGCGGCCCGTTAAACTCTTGTTTTT--AAAAACGTATCTCTTCTGAGTAATTAAAC-AAAAAAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGAATTCCAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTTGGCTTGGTGTTGGGGTACTACCCGTAAAACGGTAGGCCCTGAAATTTAGTGGCGGGCTCGCTAAGACTCTGAGCGTAGTAGTG-TTTTTTCTCAACCTCGCTTTGGAAGGATTAGCGGTTGCTCTTGCCGTAAAACC
Celoporthe_syzygii_CMW34024             CCCAGATACCCCTATGTGAACTTATACCTTTTTAAAATCGTTGCCTCGGCGCCGAGCCCGGGGGAGACGGGATATAG--AAATATCTTTTTCTTTTCCCCTCCCCTCCCTTCACCACCCGTGCAAACGGT-TGTTGGTGGGAGCAGGCCCGCCGGCGGCCCGTTAAACTCTTGTTTTT--AAAAACGTATCTCTTCTGAGTAATTAAAC-AAAAAAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGAATTCCAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTTGGCTTGGTGTTGGGGTACTACCCGTAAAACGGTAGGCCCTGAAATTTAGTGGCGGGCTCGCTAAGACTCTGAGCGTAGTAGTG-TTTTTTCTCAACCTCGCTTTGGAAGGATTAGCGGTTGCTCTTGCCGTAAAACC
;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions (CHARACTERS = 4_2_Celoporthe_ITS_) = 
		N: 1-535;
CODONPOSSET  CodonPositions (CHARACTERS = 4_2_Celoporthe_ITS_) = 
		N: 1-535;
END;