#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 17, 2024; 20:43 GMT TreeBASE (cc) 1994-2008 Study reference: Goldberg E.E., Lancaster L.T., & Ree R.H. 2011. Phylogenetic inference of reciprocal effects between geographic range evolution and diversification. Systematic Biology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S11167] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=40; TAXLABELS Arctostaphylos_andersonii Arctostaphylos_auriculata Arctostaphylos_bakeri Arctostaphylos_canescens Arctostaphylos_catalinae Arctostaphylos_columbiana Arctostaphylos_cruzensis Arctostaphylos_densiflora Arctostaphylos_glandulosa Arctostaphylos_glauca Arctostaphylos_hispidula Arctostaphylos_hookeri Arctostaphylos_hooveri Arctostaphylos_imbricata Arctostaphylos_manzanita Arctostaphylos_mendocinoensis Arctostaphylos_mewukka Arctostaphylos_montereyensis Arctostaphylos_morroensis Arctostaphylos_myrtifolia Arctostaphylos_nissenana Arctostaphylos_nummularia Arctostaphylos_obispoensis Arctostaphylos_pajaroensis Arctostaphylos_pallida Arctostaphylos_parryana Arctostaphylos_patula Arctostaphylos_pechoensis Arctostaphylos_peninsularis Arctostaphylos_pilosula Arctostaphylos_pringlei Arctostaphylos_pungens Arctostaphylos_purissima Arctostaphylos_refugioensis Arctostaphylos_silvicola Arctostaphylos_stanfordiana Arctostaphylos_tomentosa 'Arctostaphylos uva-ursi' Arctostaphylos_viridissima Arctostaphylos_viscida ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M7612] TITLE Arctostaphylos_ITS1_and_ITS2_alignment; LINK TAXA = Taxa; DIMENSIONS NCHAR=511; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Arctostaphylos_andersonii GAATGCCAAGCAGAAAGACCCGCG-AACATGTT-ATGTAT----AATTCTGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAACTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGATG----TGGCGCTCGCATATTTCGTAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTAGCCTTG-TCCTTCCATGGGCACGTGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CGCGTT---{CT}GTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTACCTTGAT Arctostaphylos_auriculata GAATGCCAATCAGAAAGACCCGCG-AACATGTT-ATGTAT----AATTCTGGAAAAAATTGAGCGG-TGGACCTAATTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAACTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGATG----TGGCGCTCGCATATTTCGTAAAACTAAACGA-TCTCGGCAACGGATATTTCGGTCAGCCTTG-TCCTTCCATGGGCACGTGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CGCGTT---TGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGT{AT}ATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTACCTTGAT Arctostaphylos_bakeri GAATGCCAAGCAGAAAGA-CCGCG-AACATGTT-ATGTAT----AATTCTGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAACTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGATG----TGGCGCTCGCATATTTCGTAAAACTAAACAACTCTCGGCAACGGATATCTCGGCTAACCTTG-TCCTTCCATGGGCACGTGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CGCGTT---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTACCTTGAT Arctostaphylos_canescens GAATGCCAAGCAGAAAGACCCGCG-AACATGTT-ATGTAT----AATTCTGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAACTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGATG----TGGCGCTCGCATATTTCGTAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTAGCCTTG-TCCTTCCATGGGCACGTGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CGCGTT---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTACCTTGAT Arctostaphylos_catalinae GAATGCCAAGCAGAAAGACCCGCG-AACATGTT-ATGTAT----AATTTCGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAACTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGATG----TGGCGCTCGCATATTTCGTAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTAGCCTTG-TCCTTCCATGGGCACGTGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CGCGTT---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTACCTTGAT Arctostaphylos_columbiana GAATGCCAAGCA{AG}AAAGA-CCGCG-AACATGTT-ATGTAT----AATT{CT}TGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAACTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGATG----TGGCGCTCGCATATTTCGTAAAACTAAACGACTCTCGGCAACGGATAT{CT}TCGGCTAGCCTTG-TCCTTCCATGGGCACGTGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CGCGTT---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTACCTTGAT Arctostaphylos_cruzensis TAAAGCCA-GCCGAAAGA-CCGCG-AACATGTA-GAATTT----AGTGTTGGAATAAATTGAGCGG-TGGA-CTACTGGTCGACTT-CTATATGTTCCTTCTCAAATGGGTG-AAGGGCCT-ACTGGAAACTAGTGCAT-CACTAGTAGGTTAACGAAACGCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AAGGAATGCTCGCCTAC-ACCCATTCGTGGGATG----TGG-GCTCGC-TATTACGAAACTCAAAACGACTCTCGG-AACGGATATCTCGGCTAGCCTTG-TCCTTCCATGGGCACGTGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CGCGTT---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTACCTGGAT Arctostaphylos_densiflora GAATGCCAAGCACAAAGA-CCGC--AACATGTT-ATGTAT----GCTTCCGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTTTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAACTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGCTG----TGGCGCTCGCATATTTCGTAAAACTAAACGACTCTCGGCAACGGATTTCTCGGCTAGCCTTG-TCCTTCCATGGGCACATGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CAC------CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAAC{AG}{CT}ACAAATGTTAC--TGAT Arctostaphylos_glandulosa GAATGCCAAGCAGAAAGA-CCGCG-AACATGTT-ATGTAT----AATTCTGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAACTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGATG----TGGCGCTCGCATATTTCGTAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTAGCCTTG-TCCTTCCATGGGCACGTGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CGCGTT---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTACCTTGAT Arctostaphylos_glauca GAATGCCAAGCAGAAAGACCCG{CT}G-AACATGTT-ATGTAT----AATTCTGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAACTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTT{AG}GAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGATG----TGGCGCTCGCATATTTCGTAAAACTAAACGACTCTCGGCAACGGATATCTCGG--AGCCTTG-TCCTTCCATGGGCACGTGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CGCGTT---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTACCTTGAT Arctostaphylos_hispidula GAATGCCAAGCAGAAAGA-CCGCG-AACATGTT-ATGTAT----GCTTCCGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTTTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAGCTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGCTG----TGGCGCTCGCATATTTCGTAAAACTAAACAACTCTCGGCACCGGATATCTCGGCTAGCCTTG-TCCTTCCATGGGCACATGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CACGTT---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GA-GACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTAC{CG}TTGAT Arctostaphylos_hookeri GAATGCCAAGCAGAAAGACCCGCG-AACATGTT-ATGTAT----AATTCTGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAACTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGATG----TGGCGCTCGCATATTTCGTAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTAGCCTTG-TCCTTCCATGGGCACGTGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CGCGTT---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTACCTTGAT Arctostaphylos_hooveri GAATGCCAAGCAGAAAGA-CCGCG-AACATGTT-ATGTAT----AATTCTGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAACTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGATG----TGGCGCTCGCATATTTCGTAAAACTAAACAACTCTCGGCAACGGATATCTCGGCTAGCCTTG-TCCTTCCATGGGCACGTGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CGCGTT---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTACCTTGAT Arctostaphylos_imbricata GAATGCCAAGCAGAAAGA-CCGCG-AACATGTT-ATGTAT----ACTTCCGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAACTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGCTG----TGGCG-TCGCATATTTCGTAAAACTAAAAGACTCTCGGCAACGGATATCTCGGCTAGCATTG-TCTTTCCATGGGCACATGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CATGTT---CGTGC-TTGGTTGGTCTAAAAATGCAGTCCCC-GATGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTACCTTGAT Arctostaphylos_manzanita ----------------------------------------------------------TTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAACTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGATG----TGGCGCTCGCATATTTCGTAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTAGCCTTG-TCCTTCCATGGGCACGTGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CGCGTT---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTACCTTGAT Arctostaphylos_mendocinoensis GAATGCCAAGCAGAAAGACCCGCG-AACATGTT-ATGTAT----GCTTCCGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTT{GT}TTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAGCTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGCTG----TGGCGCTCGCATATTTCGTAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTAGCCTTG-TCCTTCCATGGGCACATGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CACGTT---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTACCTTGAT Arctostaphylos_mewukka GAATGCCAAGCAGAAAGA-CCGCG-AACATGTT-ATGTAT----ACTTCCGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT--CTGGAAACTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGCTG----TGGCGCTCGCATATTTCGTAAAACTAAACGACTCTCGGCAACGGATATCTCGGTTAGCATTG-TCCTTCCATGGGCACATGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CATGTT---CGTGC-TTGGTTGGTCTAAAAATGCAGTCCCC-GA-GACGGACATCACAACTAGTGGTGGTTGTTTAACCGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACCAATGTTACCTTGAT Arctostaphylos_montereyensis GAATGCCAAGCAGAAAGACCCGCGAAACATGTT-ATGTAT----AATTCTGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAACTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGATG----TGGCGCTCGCATATTTCGTAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTAGCCTTG-TCCTTCCATGGGCACGTGAAAGCGTGGGTGG-ATATTGGCCTCCCGTG--CGCGTT---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTACGTTGAT Arctostaphylos_morroensis GAATGCCG-GCAAAAAGA-CCGCG-AACATGTT-ATGTTT----AATTC-GGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-C-ATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAAC-TGTTCATTCACTTGTCAAA-A{AC}G{AG}AAACCCGGCGCAAACCGCGCCAAGGAAAAT{CT}TTGGAA--AA-AAATGCACTCCTAC-ACCCATTC{AG}TGGGATG----TGGCGCTCGCATATTTCGTAAAACTAAA{CG}GACTCTCGGCAACGGATAT{CT}TCGG{AC}TAACCTTG-TCCTTCCATGGGCACGTGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CGCGTT---CGTGC-TTGGTTGGTCTAAAAATGCAGTCCCC-GACGAAGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCC-TTGACCCAAAAGTAACATACAAATGTTACTTTGAT Arctostaphylos_myrtifolia GAATGCCAAGCAAAAAGA-CCGCG-AACATGTT-ATGTAT----ACTATCGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAACTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGTTG----TGGTGCTCGCATATTTCGTAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTAGCCTTG-TCCTTCCATGGGCACATGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CACGTT---CGTGC-TTGGTTGGTCTAAAAACGTAGTCCCC-GACGACGGACATCACAACTA-TGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTACCTTGAT Arctostaphylos_nissenana GAATGCCAAGCAGAAAGACCCGCG-AACATGTT-ATGTA-----ACTTCTGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCT{CT}-CTATTTGTTCCTTCTCAAGTGGGT{CG}CAAGGTCCT-{CT}CTGGAAACTTGTTCATTCACTTG{CT}CAAATAACGAAACCCGGC{CG}CAA{AC}CC{CG}C{CG}CCAAGGAAAATCTTGGAA--AA--AATGCACGCCTAC-ACCCATTCGTGGGATG----TGGCGCTCGCAT{AT}TTTCG{GT}AACACTAAACGACTCTCGGCAACGGAT{AT}TCTCGGCTAGCCTTG-TCCTTCCATGGGCACGTGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CGCGT{AT}---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTACCTTGAT Arctostaphylos_nummularia GAATGCCAAGCAGAAAGACCCGCG-AACATGTT-ATGTAT----ACTTCCGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAGCTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGCTG----TGGCGCTCGCATATTTCGTAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTAGCCTTG-TCCTTCCATGGGCACATGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CACGTT---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTACCTTGAT Arctostaphylos_obispoensis GAATGCCAAGCAAAAAGA-CCGCGAAACATGTT-ATGTAT----AATTCTGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAACTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGATG----TGGCGCTCGCATATTTCGTAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTAGCCTTG-TCCTTCCATGGGCACGTGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CGCGTT---CGTGC-TTGGTTGGTCTAAAAATGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTACGTGGAT Arctostaphylos_pajaroensis GAATGCCAAGCAGAAAGA-CCGCG-AACATGTT-ATGTAT----AATTCTGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAACTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGATG----TGGCGCTCGCATATTTCGTAAAACTAAACAACTCTCGGCAACGGATATCTCGGCTAGCCTTG-TCCTTCCATGGGCACGTGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CGCGTT---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTACCTTGAT Arctostaphylos_pallida GAATGCCA{AC}GCAGAAAGA-CCGCG-AACATGTT-ATGTAT----AATTCTGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAACTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGATG----TGGCGCTCGCATATTTCGTAAAACTAAACGACTCTCGGCAA{CG}GGATATCTCGGCTAGCCTTG-TCTTTCCATGGGCACGTGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CGCGTT---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTAC{AG}GTGAT Arctostaphylos_parryana GAATGCCAAGCAGAAAGA-CCGCG-AACATGTT-ATGTAT----ACTTCCGGAA-AAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAACTTGTTCATTCACTTGTCAAATAACGAAACCCGG-GCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGCTG----TGGCGCTCGCATATTTCGTAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTAGCCTTG-TCCTTCCATGGGCACATGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CACGTT---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTACCTTGAT Arctostaphylos_patula GAATGCCAAGCAGAAAGA-CCGCG-AACATGTT-ATGTAT----ACTTCCGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAGCTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAATCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGCTG----TGGCGCTCGCATATTTCGTAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTAGCCTTG-TCCTTCCATGGGCACATGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CACGTT---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCGTTTGACCCAAAAGTAACATACAAATGTTACCTTGAT Arctostaphylos_pechoensis CATTGCGGGACAAAAAA--CCGCA-AACATGTG-ATGTAT----AATCCTGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAACTTGTTCATACACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGATG----TGGCGCTCGCATATTTCGTAAAACTAAACAACTCTCGGCAACGGATATCTCGGCTAGCCTTG-TCCTTCCATGGGCACGTGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CGCGTT---CGTGC-TTGGTTGGTCTAAAAATGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTTACCTACAAATGGGACCTTGAT Arctostaphylos_peninsularis GAATGCCAAGCAAAAAGA-ACGCG-AACATGTT-ATGTAT----ACTTCGGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAACTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGATG----TGGCGCTCGCATATTTTGTAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTAGCCTTG-TCCTTCCATGGGCACGTGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CGCGTT---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTCTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACGAATGTTACCCGGAT Arctostaphylos_pilosula GAATGCCAAGCA{AG}AAAGA-CCGCG-AACATGTT-ATGTAT----AATTCTGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAACTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGATG----TGGCGCTCGCATATTTCGTAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTAGCCTTG-TCCTTCCATGGGCACGTGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CGCGTT---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTACCTTGAT Arctostaphylos_pringlei GAATGCCAAGCAGAAAGACCCGCG-AACATGTT-ATGTAT----ACTTCTGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAACTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATT{CT}GTGGGATG----TGGCGCTCGCATATTTTGTAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTAGCCTTG-TCCTTCCATGGGCACGTGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CGCGTT---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTCTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACGAATGTTACCTTGAT Arctostaphylos_pungens GAATGCCAAGCAGAAAGACCCGCG-AACATGTT-ATGTAT----A{AC}TT{CT}{CT}GGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAA{AG}CTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGG{AC}TG----TGGCGCTCGCATATTTCGTAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTAGCCTTG-TCCTTCCATGGGCAC{AG}TGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--C{AG}CGTT---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTACCTTGAT Arctostaphylos_purissima GAATGCGAAGCAAAAAA--CCGCGAAACATGTG-ATGTAT----AATTCTGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAACTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGATG----TGGCGCTCGCATATTTCGTAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTAGCCTTG-TCCTTCCATGGGCACGTGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CGCGTT---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTGACCTTGAT Arctostaphylos_refugioensis GAATGCCAAGCAGAAAGA-CCGCG-AACATGTT-ATGTAT----AATTCTGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAACTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGATG----TGGCGCTCGCATATTTCGTAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTAGCCTTG-TCCTTCCATGGGCACGTGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CGCGTT---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTACCTTGAT Arctostaphylos_silvicola GAATGCCAAGCA-AAAGA-CCGCGAAACATGTTGATGTAT----AATTCTGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAACTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGATG----TGGCGCTCGCATATTTCGTAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTAGCCTTG-TCCTTCCATGGGCACGTGAATGTGTGGGTGG-ATATTGGCCTCCCGTG--CGCGTT---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCCAAAGTTACATACTAATGGGACCTTGAA Arctostaphylos_stanfordiana GAATGCCAAGCAGAAAGACCCGCG-AACATGTT-ATGTAT----GCTTCCGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTT{GT}TTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAGCTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGCTG----TGGCGCTCGCATATTTCGTAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTAGCCTTG-TCCTTCCATGGGCACATGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CACGTT---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTACCTTGAT Arctostaphylos_tomentosa GAATGCCAAGCAGAAAGACCCGCG-AACATGTT-ATGTAT----ACTT{AC}TGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAACTTGTTCATTCACTTGT{AC}AAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCATGCCTAC-ACCCATTCGTGGGATG----TGGCGCTCGCATATTT{CG}GTAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTAGCCTTG-TCCTTCCATGGGCACGTGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CGCGTT---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTACCTTGAT 'Arctostaphylos uva-ursi' GAATGCCAAGCAGAAAGACCTGCG-AACATGTT-ATGTAT----ACTT{AC}TGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAACTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA-AAATGCATGCCTAC-ACCCATTCGTGGGATG----TGGCGCTCGCATATTTCGTAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTAGCCTTG-TCCTTCCATGGGCACATGAATGCGTGGGTGG-ATATTGGCCTCCCGTG--CACGTT---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTACCTTGAT Arctostaphylos_viridissima GAATGCCAAGCAGACAGACCCGA--AACATGTT-ATGTAT----AATGCTGGAAAAAA-GGAGCGG-T-GACCTAGTTGTCGCCTT-CTATTTGTCCCTTCTCAAGTGGGTGCTAGGTCCT-TCTGGAAACTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGGCAAGGAAAATCTTGGAA--AA-AAATGCACGCCTAC-ACCCATTCGTGGGATG----TGGCGCTCGCATATTTCGTAAAACTAAACGACTCTCGGCAACGGATATCTCGGCTAGCCTTG-TCCTTCCATGGGCACGTGAATG-GTGGGTGG-ATATTGGCCTCCCGTG--CGCGTT---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTACCTTGAT Arctostaphylos_viscida GAATGCCAAGCAGAAAGA-CCGCG-AACATGTT-ATGTAT----ACTTCTGGAAAAAATTGAGCGG-TGGACCTAGTTGTCGCCTT-CTATTTGTTCCTTCTCAAGTGGGTGCAAGGTCCT-TCTGGAAACTTGTTCATTCACTTGTCAAATAACGAAACCCGGCGCAAACCGCGCCAAGGAAAATCTTGGAA--AA--AATGCACGCCTAC-ACCCATTCGTGGGATG----TGGCGCTCGCATATTTCGTAACACTAAACGATTCTCGGCAACGGATATCTCGGTTAGCCTTG-TCCTTCCATGGGCACGTGAATGCGTGGGTGGAATATTGGCCTCCCGTG--CGCGTA---CGTGC-TTGGTTGGTCTAAAAACGCAGTCCCC-GACGACGGACATCACAACTAGTGGTGGTTGTTTAACTGTTGCGTAATGTTGTGTATGCC-ATTGTTGTT---GTGGGTTGTTGCTCCTTTGACCCAAAAGTAACATACAAATGTTACCTTGAT ; END;