#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 08, 2024; 21:32 GMT TreeBASE (cc) 1994-2008 Study reference: Weeks A., & Simpson B. 2004. Molecular genetic evidence for intraspecific hybridization among endemic Hispaniolan Bursera (Burseraceae). American Journal of Botany, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1102] BEGIN TAXA; TITLE TaxonLabelSet11397; DIMENSIONS NTAX=21; TAXLABELS Bursera_brunea_clone10 Bursera_brunea_clone8 Bursera_brunea_clone9 Bursera_discolor Bursera_fagaroides Bursera_frenningae Bursera_gracilipes_clone1 Bursera_gracilipes_clone3 Bursera_inaguensis Bursera_lancifolia Bursera_longipes Bursera_microphylla Bursera_morelensis Bursera_nashii Bursera_odorata Bursera_ovata Bursera_schlechtendalii Bursera_simaruba Bursera_simarubaDR Bursera_spinescens Bursera_tecomaca ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M771] TITLE 'psbA-trnH spacer'; LINK TAXA = TaxonLabelSet11397; DIMENSIONS NCHAR=557; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Bursera_brunea_clone10 CCTTGATCCACTTGGCTACATCCGCCCCCTACACTACTTCGATTTAAATATAAATAAAAAAATCCAAAGATTTCTATTTAT-------ATCATTTTTT---------AATCATCATTC-------TTTTTTATCTTAACGTATGAAGATAGAAATTCAGATCCAAGAGGCATAAAATTCCAACTTTTATCTTTTTATCTAATCGATTCTAGTTTCTATATTAGTTTTTTT----ATATTATTCTATATATTCGATTAGTTTATATATATTAGTATATTAAGTTAGTATATTAAGGATATAAGGAAGGGACTCAATCAAAGGCATAAAAATACTTTTGTTTTGTTGAAAAC---------------------------------------AAGGATATGGAAAGAAAAAA-GTACTAAAGAAAAA----CTAGTAAATAGCAATAACGGAACAATACCGACCCTCTTGCAAGAAATTGGTATTGCTCCGTTATTTTCAAAAACTCGTATACACAAAGACCGAAATCTTATCCATTTGTAGATGGAGCTTCAATAGCAG Bursera_brunea_clone8 CCTTGATCCACTTGGCTACATCCGCCCCCTACACTACTTCGATTTAAATATAAATAAAAAAATCCAAAGATTTCTATTTAT-------ATCATTTTTT---------AATCATCATTC-------TTTTTTATCTTAACGTATGAAGATAGAAATTCAGATCCAAGAGGCATAAAATTCCAACTTTTATCTTTTTATCTAATCGATTCTAGTTTCTATATTAGTTTTTTTT---ATATTATTCTATATATTCGATTAGTTTATATATATTAGTATATTAAGTTAGTATATTAAGGATATAAGGAAGGGACTCAATCAAAGGCATAAAAATACTTTTGTTTTGTTGAAAAC---------------------------------------AAGGATATGGAAAGAAAAAA-GTACTAAAGAAAAA----CTAGTAAATAGCAATAACGGAACAATACCGACCCTCTTGCAAGAAATTGGTATTGCTCCGTTATTTTCAAAAACTCGTATACACAAAGACCGAAATCTTATCCATTTGTAGATGGAGCTTCAATAGCAG Bursera_brunea_clone9 CCTTGATCCACTTGGCTACATCCGCCCCCTACACTACTTCGATTTAAATATAAATAAAAAAATCCAAAGATTTCTATTTAT-------ATCATTTTTT---------AATCATCATTC-------TTTTTTATCTTAACGTATGAAGATAGAAATTCAGATCCAAGAGGCATAAAATTCCAACTTTTATCTTTTTATCTAATCGATTCTAGTTTCTATATTAGTTTTTTTT---ATATTATTCTATATATTCGATTAGTTTATATATATTAGTATATTAAGTTAGTATATTAAGGATATAAGGAAGGGACTCAATCAAAGGCATAAAAATACTTTTGTTTTGTTGAAAAC---------------------------------------AAGGATATGGAAAGAAAAAA-GTACTAAAGAAAAA----CTAGTAAATAGCAATAACGGAACAATACCGACCCTCTTGCAAGAAATTGGTATTGCTCCGTTATTTTCAAAAACTCGTATACACAAAGACCGAAATCTTATCCATTTGTAGATGGAGCTTCAATAGCAG Bursera_discolor CCTTGATCCACTTGGCTACATCCGCCCC-TACACTATTTCGATTTAAA------TAAAAAAATCCAAAGATTTCAATTTCT-------AGCATTTTTT---------GATCATCATTC-------TTTTTTATCTTAACTTATGAAGATAGAAATTTAGATCCAAGAGGCATAAAATTCCAACTTTTATCTTTTTATCTAATCGATTCTAGTTTCTATATTAGTTTTTTTTTTTCTATTATTCTATATATTGGATTAGTCTATAATTATTAGTATAT----------------------AAGGAAGGGACTAAATCAAAGGCATAAAAATACTTGTGTTTTGTTGAAAAC---------------------------------------AAAGATATGGAAAAAAAAA--GTACTAAAGAAAAA----CTAGTAAATAGCAATAACGGAACAATACCGACCCTCTTGCAAGAAATTGGTATTGCTCCGTTATTTTCAAAAACTCGTATACACAAAGACCGAAATCTTATCCATTTGTAGATGGAGCTTCAATAGCAG Bursera_fagaroides CCTTGATCCACTTGGCTACATCCGCCCC-TACACTATTTCGATTTAAA------TAAAAAAATAAAAAGATTTCAATTTCT-------AGCATTTTTT---------GATCATCATTC-------TTTTTTATCTTAACTTATGAAGATAGAAATTTAGATCCAAGAGGCATAAAATTCCAACTTTTATCTTTTTATCTAATCGATTCTAGTTTCTATAGTAGTTTTTTTTT--CTATTATTCTATATATTGGATTAGTCTATAATTATTAGACTAT----------------------AAGGAAGGGACTAAATCAAAGGCATAAAAATACTTGTGTTTTGTTGAAAAC---------------------------------------AAAGATATGGAAAAAAAA---GTACTAAAGAAAAA----CTAGTAAATAGCAATAACGGAACAATACCGACCCTCTTGCAAGAAATTGGTATTGCTCCGTTATTTTCAAAAACTCGTATACACAAAGACCGAAATCTTATCCATTTGTAGATGGAGCTTCAATAGCAG Bursera_frenningae CCTTGATCCACTTGGCTACATCCGCCCCCTACACTACTTCGATTTAAATATAAATAAAAAAATCCAAAGATTTCTATTTAT-------ATCATTTTTT---ATTTTTAATCATCATTC-------TTTTTTATCTTAACGTATGAAGATAGAAATTCAGATCCAAGAGGCATAAAATTCCAACTTTTATCTTTTTATCTAATCGATTCTAGTTTCTATATTAGTTTTTTTT---ATATTATTCTATATATTCGATTAGTTTATATATATTAGTATATTAAGTTAGTATATTAAGGATATAAGGAAGGGACTCAATCAAAGGCATAAAAATACTTTTGTTTTGTTGAAAAC---------------------------------------AAGGATATGGAAAGAAAAAA-GTACTAAAGAAAAA----CTAGTAAATAGCAATAACGGAACAATACCGACCCTCTTGCAAGAAATTGGTATTGCTCCGTTATTTTCAAAAACTCGTATACACAAAGACCGAAATCTTATCCATTTGTAGATGGAGCTTCAATAGCAG Bursera_gracilipes_clone1 CCTTGATCCACTTGGCTACATCCGCCCC-TACACTACTTCGATTTAAA------TAAAAAAATCCAAAGATTTCTATTTAT-------ATCATTTTTT---------GATCATCATTC-------TTTTTTATCTTAACTTATGAAGATAGAAATTCAGATCCAAGAGGCATAAAATTCCAACTTTTATCTTTTTATCTAATCGATTCTAGTTTCTATATTAGTTTTTTTT---ATATTATTCTATATATTCGATTAGTCTATAATTATCAGTATATT-------------AAGGATATAAGGAAGGGACTCAATCAAAGGCATAAAAAAACTTTTGTTTTGTTGAAAAC---------------------------------------AAGGATATGGAAAGAAAAAA-GTACTAAAGAAAAA----CTAGTAAATAGCAATAACGGAACAATACCGACCCTCTTGCAAGAAATTGGTATTGTTCCGTTATTTTCAAAAACTCGTATACACAAAGACCGAAATCTTATCCATTTGTAGATGGCGCTTCAATAGCAG Bursera_gracilipes_clone3 CCTTGATCCACTTGGCTACATCCGCCCC-TACACTACTTCGATTTAAA------TAAAAAAATCCAAAGATTTCTATTTAT-------ATCATTTTTT---------GATCATCATTC-------TTTTTTATCTTAACTTATGAAGATAGAAATTCAGATCCAAGAGGCATAAAATTCCAACTTTTATCTTTTTATCTAATCGATTCTAGTTTCTATATTAGTTTTTTTT---ATATTATTCTATATATTCGATTAGTCTATAATTATTAGTATATT-------------AAGGATATAAGGAAGGGACTCAATCAAAGGCATAAAAAAACTTTTGTTTTGTTGAAAAC---------------------------------------AAGGATATGGAAAGAAAAAA-GTACTAAAGAAAAA----CTAGTAAATAGCAATAACGGAACAATACCGACCCTCTTGCAAGAAATTGGTATTGTTCCGTTATTTTCAAAAACTCGTATACACAAAGACCGAAATCTTATCCATTTGTAGATGGCGCTTCAATAGCAG Bursera_inaguensis CCTTGATCCACTTGGCTACATCCGCCCCCTACACTACTTCGATTTAAATATAAATAAAAAAATCCAAAGATTTCTATTTAT-------ATCATTTTTT---------AATCATCATTC-------TTTTTTATCTTAACGTATGAAGATAGAAATTCAGATCCAAGAGGCATAAAATTCCAACTTTTATCTTTTTATCTAATCGATTCTAGTTTCTATATTAGTTTTTTTT---ATATTATTCTATATATTCGATTAGTTTATATATATTAGTATATTAAGTTAGTATATTAAGGATATAAGGAAGGGACTCAATCAAAGGCATAAAAATACTTTTGTTTTGTTGAAAAC---------------------------------------AAGGATATGGAAAGAAAAAA-GTACTAAAGAAAAA----CTAGTAAATAGCAATAACGGAACAATACCGACCCTCTTGCAAGAAATTGGTATTGCTCCGTTATTTTCAAAAACTCGTATACACAAAGACCGAAATCTTATCCATTTGTAGATGGAGCTTCAATAGCAG Bursera_lancifolia CCTTGATCCACTTGGCTACATCCGCCCC-TACACATATTCGATTTAAA------TAAAAAAATCAAAAGATTTCAATTTAT-------AGCATTTTTT---------GATCATCATTC-------TTTTTTATCTTAACTTATGAAGATAGAAATTTAGATCCAAGAGGCATAAAATTCCAACTTTTATCTTTTTATCTAATCGATTCTAGTTTCTATATTAGTTTTTTTTTT-CTATTATTCTATATATTGGATTAGTCTATAATTATTAGTATAT----------------------AAGGAAGGGACTAAATCAAAGGCATAAAAATACTTGTGTTTTGTTGAAAACAAAGATAAGGCATAAAAATACTTGTGTTTTGTTGAAAACAAAGATATGGAAAAAAAAA--GTACTAAAGAAAAA----CTAGTAAATAGCAATAACGGAACAATACCGACCCTCTTGCAAGAAATTGGTATTGCTCCGTTATTTTCAAAAACTCGTATACACAAAGACCGAAATCTTATCCATTTGTAGATGGAGCTTCAATAGCAG Bursera_longipes CCTTGATCCACTTGGCTACATCCGCCCC-TACACTATTTCGATTTAAA------TAAAAAAATCCAAAGATTTCAATTTCT-------ATCATTTTTT---------GATCATCATTC-------TTTTTTATCTTAACTTATGAAGATAGAAATTCAGATCCAAGAGGCATAAAATTCCAACTTTTATCTTTTTATCTAATCGATTCTAGTTTCTATATTAGTTTTTTTT---CTATTATTCTATATATTCGATTCGTCTATAATTATTAGTATATT---------------------AAGGAAGGGACTAAATCAAAGGCATAAAAATACTTTTGTTTTGTTGAAAAC---------------------------------------AAGGATATGGAAAGAAAAAA-GTACTAAAGAAAAA----CTAGTAAATAGCAATAACGGAACAATACCGACCCTCTTGCAAGAAATTGGTATTGCTCCGTTATTTTCAAAAACTCGTATACACAAAGACCGAAATCTTATCCATTTGTAGATGGAGCTTCAATAGCAG Bursera_microphylla CCTTGATCCACTTGGCTACATCCGCCCC-TACACTATTTCGATTTAAA------TAAAAAAATCCAAAGATTTCAATTTCT-------AGCATTTTTT---------GATCATCATTC-------TTTTTTATCTTAACTTATGAAGTTAGAAATTTAGATCCAAGAGGCATAAAATTCCAACTTTTATCTTTTTATCTAATCGATTCTAGTTTCTATATTAGTTTTTTTT---CTATTATTCTATATATTGGATTAGTCTATAATTATTAGTATAT----------------------AAGGAAGGGACTAAATCAAAGGAATAAAAATACTTGTGTTTTGTTGAAAAC---------------------------------------AAAGATATGGAAAAAAAAAA-GTACTAAAGAAAAA----CTAGTAAATAGCAATAACGGAACAATACCGACCCTCTTGCAAGAAATTGGTATTGCTCCGTTATTTTCAAAAACTCGTATACACAAAGACCGAAATCTTATCCATTTGTAGATGGAGCTTCAATAGCAG Bursera_morelensis CCTTGATCCACTTGGCTACATCCGCCCC-TACACTATTTCGATTTAAA------TAAAAAAATCCAAAGATTTCAATTTAT-------AGCATTTTTT---------GATCATCATTC-------TTTTTTATCTTAACTTATGAAGATAAAAATTTAGATCCAAGAGGTATAAAATTGCAACTTTTATCTTTTTATCTAATCGATTCTAGTTTCTATATTAGTTTTTTTT---CTATTATTCTATATATTGGATTAGTCTATAATTATTAGTATAT----------------------AAGGAAGGGACTAAATCAAAGGCATAAAAATACTTGTGTTTTGTTGAAAAC---------------------------------------AAAGATATGGAAAAAAAAA--GTACTAAAGAAAAAAAAACTAGTAAATAGCAATAACGGAACAATACCGACCCTCTTGCAAGAAATTGGTATTGCTCCGTTATTTTCAAAAACTCGTATACACAAAGACCGAAATCTTATCCATTTGTAGATGGAGCTTCAATAGCAG Bursera_nashii CCTTGATCCACTTGGCTACATCCGCCCCCTACACTACTTCGATTTAAATATAAATAAAAAAATCCAAAGATTTCTATTTAT-------ATCATTTTTT---------AATCATCATTC-------TTTTTTATCTTAACGTATGAAGATAGAAATTCAGATCCAAGAGGCATAAAATTCCAACTTTTATCTTTTTATCTAATCGATTCTAGTTTCTATATTAGTTTTTTTT---ATATTATTCTATATATTCGATTAGTTTATATATATTAGTATATTAAGTTAGTATATTAAGGATATAAGGAAGGGACTCAATCAAAGGCATAAAAATACTTTTGTTTTGTTGAAAAC---------------------------------------AAGGATATGGAAAGAAAAAA-GTACTAAAGAAAAA----CTAGTAAATAGCAATAACGGAACAATACCGACCCTCTTGCAAGAAATTGGTATTGCTCCGTTATTTTCAAAAACTCGTATACACAAAGACCGAAATCTTATCCATTTGTAGATGGAGCTTCAATAGCAG Bursera_odorata CCTTGATCCACTTGGCTACATCCGCCCC-TACACTATTTCGATTTAAA------TAAAAAAATCCAAAGATTTCAATTTCT-------AGCATTTTTT---------GATCATCATTC-------TTTTTTATCTTAACTTATGAAGATAGAAATTTAGATCCAAGAGGCATAAAATTCCAACTTTTATCTTTTTATCTAATCGATTCTAGTTTCTATATTAGTTTTTTTT---CTATTATTCTATATATTGGATTAGTCTATAATTATTAGTATAT----------------------AAGGAAGGGACTAAATCAAAGGAATCAAAATACTTGTGTTTTGTTGAAAAC---------------------------------------AAAGATATGGAAAAAAAAAAAGTACTAAAGAAAAA----CTAGTAAATAGCAATAACGGAACAATACCGACCCTCTTGCAAGAAATTGGTATTGCTCCGTTATTTTCAAAAACTCGTATACACAAAGACCGAAATCTTATCCATTTGTAGATGGAGCTTCAATAGCAG Bursera_ovata CCTTGATCCACTTGGCTACATCCGCCCC-TACACTATTTCGATTTAAA------TAAAAAAATCCAAAGATTTCAATTTCT-------ATCATTTTTT---------GATCATCATTC-------TTTTTTATCTTAACTTATGAAGTTAGAAATTCAGATCCAAGAGGCATAAAATTCCAACTTTTATCTTTTTATCTAATCGATTCTAGTTTCTATATTAGTTTTTTTTT--ATATTATTCTATATATTCGATTCGTCCTTAATTATTAGCATAT----------------------AAGGACGGGACTAAATCAAAGGCATAAAAATACTTTTGTTTTGTTGAAAAC---------------------------------------AAGGATATGGAAAGAAAAAA-GTACTAAAGAAAAA----CTAGTAAATAGCAATAACGGAACAATACCGACCCTCTTGCAAGAAATTGGTATTGCTCCGTTATTTTCAAAAACTCGTATACACAAAGACCGAAATCTTATCCATTTGTAGATGGAGCTTCAATAGCAG Bursera_schlechtendalii CCTTGATCCACTTGGCTACATCCGCCCC-TACACTATTTCGATTTAAA------TAAAAAAATAAAAAGATTTCAATTTCT-------AGCATTTTTT---------GATCATCATTC-------TTTTTTATCTTAACTTATGAAGATAGAAATTTAGATCCAAGAGGCATAAAATTCCAACTTTTATCTTTTTATCTAATCGATTCTAGTTTCTATAGTAGTTTTTTTTT--CTATTATTCTATATATTGTATTAGTCTATAATTATTAGACTAT----------------------AAGGAAGGGACTAAATCAAAGGCATAAAAATACTTGTGTTTTGTTGAAAAC---------------------------------------AAAGATATGGAAAAAAAA---GTACTAAAGAAAAA----CTAGTAAATAGCAATAACGGAACAATACCGACCCTCTTGCAAGAAATTGGTATTGCTCCGTTATTTTCAAAAACTCGTATACACAAAGACCGAAATCTTATCCATTTGTAGATGGAGCTTCAATAGCAG Bursera_simaruba CCTTGATCCACTTGGCTACATCCGCCCC-TACACTATTTCGATTTAAA------TAAAAAAATCCAAAGATTTCAATTTCT-------ATCATTTTTT---------GATCATCATTC-------TTTTTTATCTTAACTTATGAAGATAGAAATTCAGATCCAAGAGGCATAAAATTCCAACTTTTATCTTTTTATCTAATCGATTCTAGTTTCTATATTAGTTTTTTT----CTATTATTCTATATATTCGATTCGTCTATAATTATTAGTATATT---------------------AAGGAAGGGACTAAATCAAAGGCATAAAAATACTTTTGTTTTGTTGAAAAC---------------------------------------AAGGATATGGAAAGAAAAAA-GTACTAAAGAAAAA----CTAGTAAATAGCAATAACGGAACAATACCGAACCTCTTGCAAGAAATTGGTATTGCTCCGTTATTTTCAAAAACTCGTATACACAAAGACCGAAATCTTATCCATTTGTAGATGGAGCTTCAATAGCAG Bursera_simarubaDR CCTTGATCCACTTGGCTACATCCGCCCC-TACACTATTTCGATTTAAA------TAAAAAAATCCAAAGATTTCAATTTCT-------ATCATTTTTT---------GATCATCATTT-------TTTTTTATCTTAACTTATGAAGATAGAAATTCAGATCCAAGAGGCATAAAATTCCAACTTTTATCTTTTTATCTAATCGATTCTAGTTTCTATATTAGTTTTTTTT---CTATTATTCTATATATTCGATTCGTCTATAATTATTAGTATATT---------------------AAGGAAGGGACTAAATCAAAGGCATAAAAAAACTTTTGTTTTGTTGAAAAC---------------------------------------AAGGATATGGAAAGAAAAAA-GTACTAAAGAAAAA----CTAGTAAATAGCAATAACGGAACAATACCGACCCTCTTGCAAGAAATTGGTATTGCTCCGTTATTTTCAAAAACTCGTATACACAAAGACCGAAATCTTATCCATTTGTAGATGGAGCTTCAATAGCAG Bursera_spinescens CCTTGATCCACTTGGCTACATCCGCCCC-TACACTACTTCGATTTAAA------TAAAAAAATCCAAAGATTTCTATTTAT-------ATCATTTTTT---------GATCATCATTC-------TTTTTTATCTTAACTTATGAAGATAGAAATTCAGATCCAAGAGGCATAAAATTCCAACTTTTATCTTTTTATCTAATCGATTCTAGTTTCTATATTAGTTTTTTTT---ATATTATTCTATATATTCGATTAGTCTATAATTATTAGTATATT-------------AAGGATATAAGGAAGGGACTCAATCAAAGGCATAAAAAAACTTTTGTTTTGTTGAAAAC---------------------------------------AAGGATATGGAAAGAAAAAA-GTACTAAAGAAAAA----CTAGTAAATAGCAATAACGGAACAATACCGACCCTCTTGCAAGAAATTGGTATTGTTCCGTTATTTTCAAAAACTCGTATACACAAAGACCGAAATCTTATCCATTTGTAGATGGCGCTTCAATAGCAG Bursera_tecomaca CCTTGATCCACTTGGCTACATCCGCCCC-TACACTATTTCGATTTAAA------TAAAAAAATCCAAAGATTTCAATTTCTAGCATTGATCATT-------ATTTTTGATCATCATTCTTTATTCTTTTTTATCTTAACTTATAAAGATAGAAATTCAGATCCAAGAGGCAGAAAATTCCAACTTTTATCTTTTTATCTAATCGATTCTAGTTTCTATATTAGTTTTTTTT---CTATTATTCTATATATTCGATTAGTCTATAATTATAT--ATATT----------ATT----ATATAAGGAAGGGACTAAATAAAAGGCATAAAAAGACTTTTGTTTTGTTGAAAAC---------------------------------------AAAGATATGGAAAGAAAAAA-GTACTAAAGAAAAA----CTACTAAATAGCGATAACGGAACAATACCGACCCTCTTGCAAGAAATTGGTATTGCTCCGTTATTTTCAAAAACTCGTATACACAAAGACCGAAATCTTATCCATTTGTAGACGGAGCTTCAATAGCAG ; END;