#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 18, 2024; 1:46 GMT

TreeBASE (cc) 1994-2008

Study reference:
Jiao Z., & Li J. 2006. Phylogeny and biogeography of intercontinental disjunct Gelsemiaceae
inferred from chloroplast and nuclear DNA sequences. Systematic Botany,
null.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1703]

BEGIN TAXA;
        TITLE  TaxonLabelSet12785;
        DIMENSIONS NTAX=14;
        TAXLABELS
            Gelsemium_elegans_4162
            Gelsemium_elegans_4173
            Gelsemium_rankinii_4338
            Gelsemium_rankinii_4340
            Gelsemium_rankinii_4341
            Gelsemium_rankinii_4370
            Gelsemium_rankinii_4374
            Gelsemium_sempervirens_4186
            Gelsemium_sempervirens_4188
            Mostuea_batsii
            Mostuea_hirsuta
            Mostuea_surinamensis
            Periploca_sepium
            Strychnos_spinosa
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M925]

	TITLE rDNA_ETS;
	LINK TAXA = TaxonLabelSet12785;
	DIMENSIONS NCHAR=478;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                       10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480 ]
[                                        .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         . ]
Gelsemium_elegans_4162          TGCAGGATCAAACCAGGTAGCATTCCTCACC--GACGCCGGCGCC--GCATGAGCCAA--------GACGGCCCGAGGGCCGGTGGCTCAAGACGGGCGCGGCAGTCGTGCGCTGGTTAGCGACGAACGCTTTTTTTTT-GGGCAAACAGAGGTCGGCGACCCCC-TACCCGCAAGGCGTTCCGCATCCGAGAGCTCGAGCAACCCGACGAGGGCCAAGGCCCCGGCACGCCGAAGCGTCCGTAGCTTGGGACACGGCGGGCGCTTTGGAG-TTCACCCCGAGCCTATGCCCGTTACGGCC---AGCTCAAGGCGAACGAGGGACGATTGGGACAGA-------CGAATGCCGTCAAAGTAGGTATGCAACACAGGAAACCGTCTGGCGGCCAAG--GCAAACGATGCACTTGGACCGAGAAATGAAGGGGCTTGCACGAGA-GGACGTCGCTGCTCGA-GCAAGGATCCAACATACC
Gelsemium_elegans_4173          ????????????????????????????????-??????????????????GAGCCAA--------GACGGCCCGAGGGCCGGTGGCTCAAGACGGGCGCGGCAGTCGTGCGCTGGTTAGCGACGAACGCTTTTTTTTT-GGGCAAACAGAGGTCGGCGACCCCC-TACCCGCAAGGCGTTCCGCATCCGAGAGCTCGAGCAACCCGACGAGGGCCAAGGCCCCGGCACGCCGAAGCGTCCGTAGCTTGGGACACGGCGGGCGCTTTGGAG-TTCACCCCGAGCCTATGCCCGTTACGGCC---AGCTCAAGGCGAACGAGGGACGATTGGGACAGA-------CGAATGCCGTCAAAGTAGGTATGCAACACAGGAAACCGTCTGGCGGCCAAG--GCAAACGATGCACTTGGACCGAGAAATGAAGGGGCTTGCACGAGA-GGACGTCGCTGCTCGA-GCAGGGATCCAACATACC
Gelsemium_rankinii_4338         TGCAGGATCCAACCAGGTAGCATTCCTCACC--GACGCCGGCGCC--GCATGAGCCGA--------GACGGCCCGAGGGCCGGTGGCTCAAGACGGGCGCGGCAGTCGTCCGCTGATTAGCGACGAACGCTTATTTTTT-GGGTAAACAGAGGTCGGCGACCCCCCTACCCGCAAGGCGTTCCGCATCCGAGAGCTCGAGCGACTCGACGAGGGCCAAGGCCACGGCACGCCGAAGCGTCCGTAGCTTGGGACACGGCGAGCGCTTTGGAG-TTCACCCCGAGCCGATGCCCGTTAAGGCC---AGCTCAAGGCGAACGGGGGACGATTGGGACAAA-------CGAATGCCGTCGCAGTAGGTATGCAGCACAGGAAACCGTCTGGCGGCCAAG--GCAAACGATGCACTTGGACCGAGAAATGAAGGGGCTTGCACGAGA-GGACGTCGCTGCCCAA-GCAGGGATCCAACATACC
Gelsemium_rankinii_4340         TGCAGGATCCAACCAGGTAGCATTCCTCACC--GACGCCGGCGCC--GCATGAGCCGA--------GACGGCCCGAGGGCCGGTGGCTCAAGACGGGCGCGGCAGTCGTCCGCTGATTAGCGACGAACGCTTATTTTTT-GGGTAAACAGAGGTCGGCGACCCCCCTACCCGCAAGGCGTTCCGCATCCGAGAGCTCGAGCGACTCGACGAGGGCCAAGGCCACGGCACGCCGAAGCGTCCGTAGCTTGGGACACGGCGAGCGCTTTGGAG-TTCACCCCGAGCCGATGCCCGTTAAGGCC---AGCTCAAGGCGAACGGGGGACGATTGGGACAAA-------CGAATGCCGTCGCAGTAGGTATGCAGCACAGGAAACCGTCTGGCGGCCAAG--GCAAACGATGCACTTGGACCGAGAAATGAAGGGGCTTGCACGAGA-GGACGTCGCTGCCCAA-GCAGGGATCCAACATACC
Gelsemium_rankinii_4341         TGCAGGATCCAACCAGGTAGCATTCCTCACC--GACGCCGGCGCC--GCATGAGCCGA--------GACGGCCCGAGGGCCGGTGGCTCAAGACGGGCGCGGCAGTCGTCCGCTGATTAGCGACGAACGCTTATTTTTT-GGGTAAACAGAGGTCGGCGACCCCCCTACCCGCAAGGCGTTCCGCATCCGAGAGCTCGAGCGACTCGACGAGGGCCAAGGCCACGGCACGCCGAAGCGTCCGTAGCTTGGGACACGGCGAGCGCTTTGGAG-TTCACCCCGAGCCGATGCCCGTTAAGGCC---AGCTCAAGGCGAACGGGGGACGATTGGGACAAA-------CGAATGCCGTCGCAGTAGGTATGCAGCACAGGAAACCGTCTGGCGGCCAAG--GCAAACGATGCACTTGGACCGAGAAATGAAGGGGCTTGCACGAGA-GGACGTCGCTGCCCAA-GCAGGGATCCAACATACC
Gelsemium_rankinii_4370         TGCAGGATCCAAACCCGTAGCATTCCTCACC--GACGCCGGCGCC--GCATGAGCCGA--------GACGGCCCGAGGGCCGGTGGCTCAAGACGGGCGCGGCAGTCGTCCGCTGATTAGCGACGAACGCTTATTTTTT-GGGTAAACAGAGGTCGGCGACCCCCCTACCCGCAAGGCGTTCCGCATCCGAGAGCTCGAGCGACTCGACGAGGGCCAAGGCCACGGCACGCCGAAGCGTCCGTAGCTTGGGACACGGCGAGCGCTTTGGAG-TTCACCCCGAGCCGATGCCCGTTAAGGCC---AGCTCAAGGCGAACGGGGGACGATTGGGACAAA-------CGAATGCCGTCGCAGTAGGTATGCAGCACAGGAAACCGTCTGGCGGCCAAG--GCAAACGATGCACTTGGACCGAGAAATGAAGGGGCTTGCACGAGA-GGACGTCGCTGCCCAA-GCAGGGATCCAA??????
Gelsemium_rankinii_4374         ????????????????????????????????-??????????????????GAGCCGA--------GACGGCCCGAGGGCCGGTGGCTCAAGACGGGCGCGGCAGTCGTCCGCTGATTAGCGACGAACGCTTATTTTTT-GGGTAAACAGAGGTCGGCGACCCCCCTACCCGCAAGGCGTTCCGCATCCGAGAGCTCGAGCGACTCGACGAGGGCCAAGGCCACGGCACGCCGAAGCGTCCGTAGCTTGGGACACGGCGAGCGCTTTGGAG-TTCACCCCGAGCCGATGCCCGTTAAGGCC---AGCTCAAGGCGAACGGGGGACGATTGGGACAAA-------CGAATGCCGTCGCAGTAGGTATGCAGCACAGGAAACCGTCTGGCGGCCAAG--GCAAACGATGCACTTGGACCGAGAAATGAAGGGGCTTGCACGAGA-GGACGTCGCTGCCCAA-GCAGGGATCCAACATCCC
Gelsemium_sempervirens_4186     ????????????????????????????????-???????????????????AGCCGA--------GACGGCCCGAGGGCCGCCGGCTCAAGACGGGCGCGGCAGTCGTCCGCTGGTTAGCGACGAACGCTTATTTTTT-GGGTAAACAGAGGTCGGCGACCCCCCTACCCGCAAGGCGTTCCGTATCCGAGAGATCGAGCGACTCGACGAGGGCCAAGGCCGCGGCACGCCGAAGC{AT}TCCGTAGCTTGGGACACGGCGAGCGCTTTGGAG-TTCACCCCGAGCCGATGCCCTTTACGGCCACCAGCTCAAGGCGAACGGGGGACGATTGGGACAAA-------CGAATGCCGTCACAGTAGGTATGCAGCACAGGAAACCGTCGGGCGGCCAAG--GCAAACGATGCACTTGAACCGAGAAATGAAAGGGCTTGCACGAGA-GGACGTCGCTGCTCAA-GCAGGGATCCAACATACC
Gelsemium_sempervirens_4188     ????????????????????????????????-??????????????????GAGCCGA--------GACGGCCCGAGGGCCGCCGGCTCAAGACGGGCGCGGCAGTCGTCCGCTGGTTAGCGACGAACGCTTATTTTTT-GGGTAAACAGAGGTCGGCGACCCCCCTACCCGCAAGGCGTTCCGCATCCGAGAGATCGAGCGACTCGACGAGGGCCAAGGCCGCGGCACGCCGAAGCGTCCGTAGCTTGGGACACGGCGAGCGCTTTGGAG-TTCACCCCGAGCCGATGCCCTTTACGGCCACCAGCTCAAGGCGAACGGGGGACGATTGGGACAAA-------CGAATGCCGTCACAGTAGGTATGCAGCACAGGAAACCGTCGGGCGGCCAAG--GCAAACGATGCACTTGAACCGAGAAATGAAAGGGCTTGCACGATA-GGACGTCGCTGCTCAA-GCAGGGATCCAACATACC
Mostuea_batsii                  TGCAGGATC-AACCAGGTAGCATTCCTCATC--AACGCCGGCACC--GCACGTGACAGAC-GGTCCTAAAAGACTAGGACCAGCCAGGCGAGGCGGGCACGGCAGTCGTTCGCTGGTTAGCGACGAACGCTCATTT-CTTGGATAAATGGGAGGTGAAGTCCCCCCTACCCGCAACGTATTCCGTTTCTGAAAGCTTGAGCAACTCGGCGTGCGCCGATGCCACGATACGCAAATGCATCCATGGATTGGGAAACGGCGAGGGCTTTAATG-TTCACCCCGGACCCGC-CCATTTTGGGCC---AATGCAAGGTGAACTAGGGATGATTGGTACTAA-------AGAATGCCGTCATGATCGGTTTGAAACGCAGGAAACCGTTCCAAGGCCAAG--GCAACTGACGCTCTTGAGCCAAGTAATGAGGGGCAGTGAATTGCAAGGATGACGCTGCAGA--GCAGGGATCCAACATACC
Mostuea_hirsuta                 TGCAGGATC-AACCAGGTAGCATTCCTCACC--GACGCCGGCACCCCCCACGTGCCAGACGGGT{CG}CTAAAAGACTAGAACCGGCCGCCCTGGGTGAGCACGGCGATCGTTCGCTGGTTAGCGATGAACGCTTGCTTTTT-GGGTAAAGGAGGGTCAATGACCCC--TACCCGAAATGCATTCCATTTCCGAGAGTTCGAGCAACTTGACGAGAACCGATGCCATGGCACGCAAATGCATCCGTGGATTGGGACACGACAAGCGCTTC-GAGTTTCACATTGCGTGCGG-CCCTTTCGGGTC---AACACAAGGTGAACGAGGGACGATCGAGACTAA-------AGAATGCCATCACAATAGGTATGCAACACAGGAAACCGTCTCGCGGCCAAA--GCAAATTGTGCTCTTGGACCTAATAATGAAAAGCCGTGAATGGCG-GGATGTCGCTGCGTAA-GCAGGGATCCAACATACC
Mostuea_surinamensis            TGCAGGATC-AACCAGGTAGCATTCCT-ACCCCGACGCCGGCACC--GCACGAGCCAAAC-TCTCCTGGAACACCA-GAAGAGTCGATCGAAGCGGGCGCAACAGTCGTTCGCTAATTAGCGATGAACGCTTGTTTTCTTGGGTAAACGAGAGTCGAGGACCCCC-TACCCACCTTGCTTTCCGCATCCGAGAGCCCGGGCGACTCTGCGTGGACCGATGCCACGGCATGCCCA-GCATGCGTGGGTCGGGACACGACCGTCGCCTT-GAGTTTCACCCAGCGCCCAG-CCCTTTCGGGCC---AACGCAAGGCGAACGAGGGACGATTGGGACAAAAAAAAAGAGAATGCCGTCACGGTAGGTATGCAACACAGGAAACCGTCTGGCGGCCAAG--GCAAACGATGCTCTTGGACCAAGAA-TGAAGGGCCTGGACGGGTA-GGCTGTCGCTGCCCAA-GCAGGGATCCAACATACC
Periploca_sepium                TGCAGGATC-AACCAGGTAGCATTCCTCAGC--GACATCG-CACC--GCATGAGCAA---------GACAGCCAACGGCTAGCCCGATCAAGACGGGAACGGAAGTCGTTCGCTAGTTTAGCGTGAACGC--GTTATAGGAGCAAAAGGTAGGCCGTGTGACCTACTACCCTCAAAGTTTTCTGAATCCGAGAGTTCAAGCATAGCTCTATGCACC-----------ACAACCGTCAGAGGACAGCGTGGGACACTTCACATGCTACATTTGTTCATCTAGTAAGGAACCACATGAGAGT-----GCACTAGACAAAAGAGGGACG-TTGGGACAAC-------CGAATGCCTTCATG-TAGGTATGCAACACAGGAAACCCAAGACCCGATCAA--GGCAAAATTGCTCTTGCACCATAAT-TGAAGAGGCATGTCAGGTA-GGATGTCGCTGCACGAAGCAGGGATCCAACATACC
Strychnos_spinosa               TGCAGGATCCAACCAGGTAGCATTCCTCACA--GACGTCGACACC--GCGTGGTCCAG-------CGCGACCGCAAGGGTCCGCTTGCCAAAACGGAGACGACAGTCGTGCGCTGGTTAGCGACGAACGCTTCGTTTT--GGGTAAATAGAGGTCAGCAACCCCG-TACCCGCTATGCATTCTGCATCCGAAAGAACAAGCAACTCGCCACGTGCCACAGACACCGCACGACATGCCGTGGGCGTTGAGGATCGCAAGGAGTGCTTCGCGG-TTCATCTAGTTAGCAATCCCTGACGGGC----AGCACAAGACGAACATGGGACAACTTA{AG}ACAAA-------CGTTG-CCATCACAGTAGGTACGCAGCACAGGAAACCGAACGAACGGCCAAGGCTAACGTCGCACTTGGCCTAG-CAC-TGAATAGGCGTACATGAGA-GGACGTCGCTGCCCAA-GCAGGGATCCAACATACC
;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions (CHARACTERS = rDNA_ETS) = 
		N: 1-478;
CODONPOSSET  CodonPositions (CHARACTERS = rDNA_ETS) = 
		N: 1-478;
END;