#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 15, 2024; 18:31 GMT

TreeBASE (cc) 1994-2008

Study reference:
Aedo C., García M., Reddy S.M., Aldasoro J.J., & Navarro C. 2006. Taxonomic revision
of Geranium subsect. Mediterranea (Geraniaceae). Systematic Botany, 32(1): 93-128.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1704]

BEGIN TAXA;
        TITLE  shortest_tree;
        DIMENSIONS NTAX=9;
        TAXLABELS
            Geranium_bohemicum_1
            Geranium_gymnocaulon
            Geranium_ibericum_2
            Geranium_kurdicum_1
            Geranium_libani
            Geranium_peloponnesiacum_1
            Geranium_pusillum
            Geranium_renardii_2
            Geranium_robertianum
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M927]

	TITLE 'trnL-F';
	LINK TAXA = shortest_tree;
	DIMENSIONS NCHAR=983;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                      10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980      ]
[                                       .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .      ]
Geranium_bohemicum_1           TTAATTGGATGAGCCTTAGTACGGAACCTACTAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATAAAAGAGGGGCAATCCTGAGCCAAATCCTTTTTTACGAAAATAAAGAGGGGCTCAGAAAGCGAGAATAGAAAAAAAA--GGACAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATGGAGTCGGCTGCGTTACGTTGATAAAGGAAGCCTTCTATCGAACCTTCAGAAAGGGCGAGGGTAAACCTATATATACGTACTGAAAGATTGCTTCAAATGATTTCAAATGATTAATGAAAATCCGAGTCCGTATATATAGAGAATTCTATATATAAGAATCGA-ATAGTCATTGATCAAATCATTGACCCCAGAGTCTGATGGATCTTTTCTTTTGAATAACGGATTAATCGGACGAGAATAAAGAGAGAGTCCTGTTCTACATGTCAATAACAGGCAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGATGTTAAAAATCATGAGGGTTCAAGTCCCTCTATCCCCAAC-AAAGTCTCCTTCAACTCCCT-TCCCTAACTCTTTGCTGCTTTTCAATTTTGAAAGGGTTTCCAAA-TTTGTTATCTTTCTCATTTCTTCT-CTTTTTTTT--CCTTTTTCACAAAAAAA-GTACCCAATAGACCCTTTTTTTCCTCTTATCACAGGTCTTGCAGTATATATGACACACGTACAAAGGGGGTGGCCCAGGAACCCTCATGTGATTTGTTGAAGGATTCAGAATCCATATTATTACATTACGCATTTTGT-----ACAAAGTCTTCTTTTTTTTAAGG-----ATCTAAGAAATGCGGGGCGTGGAAAAGACTCAAAATACCTTGTTTCTGTCATTTTTTTGAATTGACAGAAACTCAAGTCATCTAATAAAATAAGGGATGATGCTTTGGAAATCGTCGGGATAGCTCAGCTGGTAGAGCAGAGACTGAAATC
Geranium_gymnocaulon           ???????????????????TACGGAACCTACTAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATAAAAGAGGGGCAATCCTGAGCCAAATCCTTTTTTACGAAAATAAAGAGGGGCTCAGAAAGCGAGAATAGAAAAAAAAA-GGACAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATGGAGTCGGCTGCGTTACGTTGATAAAGGAAGCCTTCTATCGAACCTTCAGAAAGGGCGAGGGTAAACCTATATA------CTGAAAGATTGCTTCAAATGATTTCAAATGATTAATGAAAATCCGAGTCCGTATATATAGAGAATT-TATATATAAGAATCGA-ATAGTCATTGATCAAATCATTGACCCCAGAGTCTGATGGATCTTTTCTTTTGAATAACAGATTAATCGGACGAGAATAAAGAGAGAGTCCTGTTCTACATGTCAATAACAGGCAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGATGTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAC-AAAGTCTCCTTCAACTCCCT-TCCCTAACTCTTTGCTGCTTTTCAATTTTGAAAGGGTTTCCAAA-TTTGTTATCTTTCTCATTTCTTCT-CTTTTTTTT--CCTTTTTCACAAAAAAA-GTACCCAATAGACCCTTTTTTTCCTCTTATCACAGGTCTTGCGGTATATATGACACACGTACAAAGGGGGTGGCCCAGGAACCCTCATGTGATTTGTTGAAGGATTCAGAATCCATATTATTACATTACGCGTTTTGT-----ACAAAGTCTTCTTTTTTTTAAGG-----ATCTAAGAAATGCGGGGCGTGGAAAAGACTCAAAATACCTTGTTTC-GTCATTTTTTTGAATTGACAGAAACTCAAGTCATCTAATAAAATAAGGGATGATGCTTTGGAAATCGTCGGGATAGCTCAGCTGGTAGAGCAGAGACTGAAATC
Geranium_ibericum_2            TTAATTGGATGAGCCTTAGTACGGAACCTACTAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATAAAAGAGGGGCAATCCTGAGCCAAATCCTTTTTTACGAAAATAAAGAGGGGCTCAGAAAGCGAGAATAGAAAAAAAAA-GGACAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATGGAGTCGGCTGCGTTACGTTGATAAAGGAAGCCTTCTATCGAACCTTCAGAAAGGGCGAGGGTAAACCTATATA------CTGAAAGATTGCTTCAAATGATTTCAAATGATTAATGAAAATCCGAGTCCGTATATATAGAGAATT-TATATATAAGAATCGA-ATAGTCATTGATCAAATCATTGACCCCAGAGTCTGATGGATCTTTTCTTTTGAATAACAGATTAATCGGACGAGAATAAAGAGAGAGTCCTGTTCTACATGTCAATAACAGGCAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGATGTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAC-AAAGTCTCCTTCAACTCCCT-TCCCTAACTCTTTGCTGCTTTTCAATTTTGAAAGGGTTTCCAAA-TTTGTTATCTTTCTCATTTCTTCT-CTTTTTTTT--CCTTTTTCACAAAAAAA-GTACCCAATAGACCCTTTTTTTCCTCTTATCACAGGTCTTGCGGTATATATGACACACGTACAAAGGGGGTGGCCCAGGAACCCTCATGTGATTTGTTGAAGGATTCAGAATCCATATTATTACATTACGCGTTTTGT-----ACAAAGTCTTCTTTTTTTTAAGG-----ATCTAAGAAATGCGGGGCGTGGAAAAGACTCAAAATACCTTGTTTC-GTCATTTTTTTGAATTGACAGAAACTCAAGTCATCTAATAAAATAAGGGATGATGCTTTGGAAATCGTCGGGATAGCTCAGCTGGTAGAGCAGAGACTGAAATC
Geranium_kurdicum_1            ?????????????????AGTACGGAACCTACTAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATAAAAGAGGGGCAATCCTGAGCCAAATCCTTTTTTACGAAAATAAAGAGGGGCTCAGAAAGCGAGAATAGAAAAAAAAA-GGACAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATGGAGTCGGCTGCGTTACGTTGATAAAGGAAGCCTTCTATCGAACCTTCAGAAAGGGCGAGGGTAAACCTATATA------CTGAAAGATTGCTTCAAATGATTTCAAATGATTAATGAAAATCCGAGTCCGTATATATAGAGAATT-TATATATAAGAATCGA-ATAGTCATTGATCAAATCATTGACCCCAGAGTCTGATGGATCTTTTCTTTTGAATAACAGATTAATCGGACGAGAATAAAGAGAGAGTCCTGTTCTACATGTCAATAACAGGCAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGATGTTAAAAATCTTGAGGGTTCAAGTCCCTCTATCCCCAAC-AAAGTCTCCTTCAACTCCCT-TCCCTAACTCTTTGCTGCTTTTCAATTTTGAAAGGGTTTCCAAA-TTTGTTATCTTTCTCATTTCTTCT-TTTTTTTTT--CCTTTTTCACAAAAAAA-GTACCCAATAGACCCTTTTTTTCCTCTTATCACAGGTCTTGCGGTATATATGACACACGTACAAAGGGGGTGGCCCAGGAACCCTCATGTGATTTGTTGAAGGATTCAGAATCCATATTATTACATTACGCGTTTTGT-----ACAAAGTCTTCTTTTTTTTAAGG-----ATCTAAGAAATGCGGGGCGTGGAAAAGACTCAAAATACCTTGTTTC-GTCATTTTTTTGAATTGACAGAAACTCAAGTCATCTAATAAAATAAGGGATGATGCTTTGGAAATCGTCGGGATAGCTCAGCTGGTAGAGCAGAGACTGAAATC
Geranium_libani                ??????????????????????GGAACCTACTAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATAAAAGAGGGGCAATCCTGAGCCAAATCCTTTTTTACAAAAATAAAGAGGGGCTCAGAAAGCGAGAATAGAAAAAAAAA-GGACAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATGGAGTCGGCTGCGTTACGTTGATAAAGGAAGCCTTCTATCGAACCTTCAGAAAGGGCGAGGGTAAACCTATATA------CTGAAAGATTGCTTCAAATGATTTCAAATGATTAATGAAAATCCGAGTCCGTATATATAGAGAATT-TATATATAAGAATCGA-ATAGTCATTGATCAAATCATTGACCCCAGAGTCTGATGGATCTTTTCTTTTGAATAACAGATTAATCGGACGAGAATAAAGAGAGAGTCCTGTTCTACATGTCAATAACAGGCAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGATGTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAC-AAAGTCTCCTTCAACTCCCT-TCCCTAACTCTTTGCTGCTTTTCAATTTTGAAAGGGTTTCCAAA-TTTGTTATCTTTCTCATTTCTTCT-CTTTTTTTT--CCTTTTTCACAAAAAAA-GTACCCAATAGACCCTTTTTTTCCTCTTATCACAGGTCTTGCGGTATATATGACACACGTACAAAGGGGGTGGCCCAGGAACCCTCATGTGATTTGTTGAAGGATTCAGAATCCATATTATTACATTACGCGTTTTGT-----ACAAAGTCTTCTTTTTTTTAAGG-----ATCTAAGAAATGCGGGGCGTGGAAAAGACTCAAAATACCTTGTTTC-GTCATTTTTTTGAATTGACAGAAACTCAAGTCATCTAATAAAATAAGGGATGATGCTTTGGAAATCGTCGGGATAGCTCAGCTGGTAGAGCAGAGACTGAAATC
Geranium_peloponnesiacum_1     ????????????????????????AACCTACTAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATAAAAGAGGGGCAATCCTGAGCCAAATCCTTTTTTACAAAAATAAAGAGGGGCTCAGAAAGCGAGAATAGAAAAAAAAA-GGACAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATGGAGTCGGCTGCGTTACGTTGATAAAGGAAGCCTTCTATCGAACCTTCAGAAAGGGCGAGGGTAAACCTATATA------CTGAAAGATTGCTTCAAATGATTTCAAATGATTAATGAAAATCCGAGTCCGTATATATAGAGAATT-TATATATAAGAATCGA-ATAGTCATTGATCAAATCATTGACCCCAGAGTCTGATGGATCTTTTCTTTTGAATAACAGATTAATCGGACGAGAATAAAGAGAGAGTCCTGTTCTACATGTCAATAACAGGCAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGATGTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAC-AAAGTCTCCTTCAACTCCCT-TCCCTAACTCTTTGCTGCTTTTCAATTTTGAAAGGGTTTCCAAA-TTTGTTATCTTTCTCATTTCTTCT-CTTTTTTTT--CCTTTTTCACAAAAAAA-GTACCCAATAGACCCTTTTTTTCCTCTTATCACAGGTCTTGCGGTATATATGACACACGTACAAAGGGGGTGGCCCAGGAACCCTCATGTGATTTGTTGAAGGATTCAGAATCCATATTATTACATTACGCGTTTTGT-----ACAAAGTCTTCTTTTTTTTAAGG-----ATCTAAGAAATGCGGGGCGTGGAAAAGACTCAAAATACCTTGTTTC-GTCATTTTTTTGAATTGACAGAAACTCAAGTCATCTAATAAAATAAGGGATGATGCTTTGGAAATCGTCGGGATAGCTCAGCTGGTAGAGCAGAGACTGAAATC
Geranium_pusillum              ???????????????????????????????????????????????????????????CCCTGGAATAACAGAGGGGCAATCCTGAGCCAAATCCTTTTTTACGAAAATAAAAAGGGGCTCAGAAAGCAAGAATAGAAAAAAAA--GGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATGGAGTCGGCTGCGTTACGTTGATAAAGGAAGCCTTCTATCGAACCCTCAGAAAGGGCAAGGGTAAACCTATATATACGTACTGAAAAATTGCTTCAAATGATTTCAAATGATTAATGAAAATCCAAGTCCGTATATATATAGAATT-TATATATAAGAATCGA-ATAATCATTGATCAAATCATTGACCCCAAAATCTGATGGATCTTTTTTTTTGAATAACGGATTAATCGGATGAGAATAAAGAGAGAGTCCTGTTCTACATGTCAATAACAGGCAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGATGTTAAAAATCGT{CG}AGGGTTCAAGTCCCTCTATCCCCAAC-AAAGTCTCCCTCAACTCCCTATCCCTAACTCTTTGCTGCCTTTCAATTTGGAAAGGGTTTCCAAA-TTTATTATCTTTCTCATTTCTTCT-CTTTAATTTTACCTTTT-CACAAAAAAA-GTACCCAATAGACTCTTTTTTTCCTCTTATCACAGGTCTTGCGGTATATATGACACATGTACAAAGGGGGTGGCCCAGGAACCCTCATGTGATTTGTTGAAGGATTCATAATCCATATTATTACATTACGCCTTTTGT-----CCAAAGTCTTCTTTTTTTTAAGGTAAGGATCTAAGAAATGCGGGGCGTGGAAAAGACTCAAAATACCTTGGTTC-GTCATTTCTTTGAATTGACATAAACTCAAGTCATCTAATAAAATAAGGGAT?????????????????????????????????????????????????????
Geranium_renardii_2            ?????????????????????CGGAACCTACTAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATAAAAGAGGGGCAATCCTGAGCCAAATCCTTTTTTACGAAAATAAAGAGGGGCTCAGAAAGCGAGAATAGAAAAAAAAAAGGACAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATGGAGTCGGCTGCGTTACGTTGATAAAGGAAGCCTTCTATCGAACCTTCAGAAAGGGCGAGGGTAAACCTATATA------CTGAAAGATTGCTTCAAATGATTTCAAATGATTAATGAAAATCCGAGTCCGTATATATAGAGAATT-TATATATAAGAATCGA-ATAGTCATTGATCAAATCATTGACCCCAGAGTCTGATGGATCTTTTCTTTTGAATAACAGATTAATCGGACGAGAATAAAGAGAGAGTCCTGTTCTACATGTCAATAACAGGCAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGATGTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAC-AAAGTCTCCTTCAACTCCCT-TCCCTAACTCTTTGCTGCTTTTCAATTTTGAAAGGGTTTCCAAA-TTTGTTATCTTTCTCATTTCTGCT-CTTTTTT-----------CACAAAAAAA-GTACCCAATAGACCCTTTTTT-CCTCTTATCACAGGTCTTGCGGTATATATGACACACGTACAAAGGGGGTGGCCCAGGAACCCTCATGTGATTTGTTGAAGGATTCAGAATCCATATTATTACATTACGCGTTTTGT-----ACAAAGTCTTCTTTTTTTTAAGG-----ATCTAAGAAATGCGGGGCGTGGAAAAGACTCAAAATACCTTGTTTC-GTCATTTTTTTGAATTGACAGAAACTCAAGTCATCTAATAAAATAAGGGATGATGCTTTGGAAATCGTCGGGATAGCTCAGCTGGTAGAGCAGAGACTGAAATC
Geranium_robertianum           ???????????????????????????????????????????????????????????CCCTGGAATAAAAGAGGGGCAATCCTGAGCCAAATCCTTTTTTACGAAAATAAAGAGGGGCTCACAAAGCGAGAATAGAAAAAAA---GGACAGGTGCAGAGACTCAATGGAAGCTGTTCTAAAAAATGGAGTCGGTTGCATTACATTGATAAAGGAAGCCTTCTTTCGAACCTTCAGAAAGGGAGAGGGTAAACCTATATATACGTACTGAAAAATTGCTTCAAATGATT----------AATGAGAACCCGAGTACGTATATATGGAAAATT-TATATATAAGAATCGATATAGTCATTGATCAAATCATTGACCCTAGAGTCTGATGGATCTTTT-----GAATCACTGATTAATCAGACGAGAATAAAGAGAGAGTCCTGTTTTACATGTCAATAAC-GGCAACAATGCAATTTATAGTAAGAGGAAAATCCGTCGATGTTAAAAGTCGTGAGGGTTCAAGTCCCTCTATCCCCAACTAAAGTATCCTTCGATTCCCT-TCCCGAACTCTTTGCTGCTTATCAATTTTAAAGAGGTTTCAAAAATTTGTTATCTTTCTTATTTCTTCTTCTTTTTT----CCTTTTTAACAAAAAAAAGTACCCAATGGACCCTTTTT-GCCTCTTATCACAGGTCTTGCGGTATATATGACACACGTACAAAGGGGGTGGACCAGGAGCCCTCATGTGATTTGTTGAAGGATTCAGAATACATATTATTACATTACGCCTTTTGTATTGTATAAAGTCCTCTTTGTTTTAAGT-----ATCTAAGAAATGTGGGGCGTCAAAAAGACTGAAAAAA--TTTTTTCAGTCATTTT----AATTGACAGAAACTCAAGTCAGCTAATAAAATAAGGGAT?????????????????????????????????????????????????????
;
END;