#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 25, 2024; 6:44 GMT TreeBASE (cc) 1994-2008 Study reference: Susko E., Field C., Blouin C., & Roger A. 2003. Estimation of Rates-Across-Sites Distributions in Phylogenetic Substitution Models. Systematic Biology, 52(5): 594-603. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1019] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=17; TAXLABELS Agrotis_ipsilon Aspergillus_terreus_1 Blattella_germanica Candida_utilis Cricetulus_griseus Dendroctonus_jeffreyi Drosophila_melanogaster Gibberella_fujikuroi Homo_sapiens Ips_paraconfusus Oryctolagus_cuniculus Phycomyces_blakesleeanus Rattus_norvegicus Saccharomyces_cerervisiae_1 Schizosaccharomyces_pombe_1 Strongylocentrotus_purpuratus Xenopus_laevis ; END; BEGIN TAXA; TITLE Taxa2; DIMENSIONS NTAX=11; TAXLABELS Aeropyrum_pernix Halobacterium_species Haloferax_volcanii Methanobacterium_thermoautotrophicum Methanococcus_jannaschii Methanosarcina_mazei Pyrobaculum_aerophilum Pyrococcus_abyssii Pyrococcus_furiosus Pyrococcus_horikoshii Sulfolobus_solfataricus ; END; BEGIN TAXA; TITLE Taxa3; DIMENSIONS NTAX=13; TAXLABELS Arabidopsis_thaliana Caenorhabditis_elegans Candida_albicans Dictyostelium_discoideum Drosophila_melanogaster Giardia_lamblia Homo_sapiens Leishmania_major Mus_musculus Oryza_sativa Saccharomyces_cerevisiae Schizosaccharomyces_pombe Trypanosoma_brucei ; END; BEGIN TAXA; TITLE Taxa4; DIMENSIONS NTAX=23; TAXLABELS Agrobacterium_tumefaciens Borrelia_burgdorferi Bradyrhizobium_japonicum Caenorhabditis_elegans Caulobacter_crescentus Chlamydia_pneumoniae Ehrlichia_sennetsu Ehrlichia_sp. Eimeria_tennela Francisella_tularensis Haemophilus_ducreyi Legionella_pneumophila Leishmania_major Leptospira_interrogans Mus_musculus Phaseolus_vulgaris Pisum_sativum Rhodobacter_capsulatus Rickettsia_prowazekii Saccharomyces_cerevisiae Schizosaccharomyces_pombe Trichomonas_vaginalis Trypanosoma_cruzi ; END; BEGIN TAXA; TITLE Taxa5; DIMENSIONS NTAX=22; TAXLABELS _Pseudomonas_aeruginosa Arabidopsis_thaliana Bartonella_bacilliformis Bradyrhizobium_japonicum Caulobacter_crescentus Chlamydia_trachomatis Chromatium_vinosum Cucurbita_sp. Dictyostelium_discoideum Drosophila_melanogaster Eschericia_coli Euglena_gracilis Homo_sapiens Neisseria_gonorrhoea Plasmodium_falciparum Rhizobium_meliloti Rhodobacter_sphaeroides Saccharomyces_cerevisiae Schizosaccharomyces_pombe Thermus_thermophilus Treponema_pallidum Trypanosoma_brucei ; END; BEGIN TAXA; TITLE Taxa6; DIMENSIONS NTAX=37; TAXLABELS Ajellomyces_capsulatus Anopheles_albimanus Arabidopsis_thaliana_1 Arabidopsis_thaliana_2 Arabidopsis_thaliana_3 Babesia_bovis Brugia_pahangi Caenorhabditis_elegans Candida_albicans Candida_tropicalis Cricetulus_griseus Danio_rerio Dictyostelium_discoideum Drosophila_melanogaster Eimeria_tennela Guillardia_theta Homo_sapiens_1 Homo_sapiens_2 Ipomoea_nil Leishmania_amazonensis Leishmania_infantum Lycopersic_esculentum Neurospora_crassa Oryza_sativa Plasmodium_falciparum Podospora_anserina Porphyra_yezoensis Rattus_norvegicus Saccharomyces_cerevisiae Salmo_salar Schizosaccharomyces_pombe Tetrahymena_thermophila Theileria_parva Triticum_aestivum Trypanosoma_brucei Trypanosoma_cruzi Zea_mays ; END; BEGIN TAXA; TITLE Taxa7; DIMENSIONS NTAX=15; TAXLABELS Arabidopsis_thaliana_1 Artemisia_annua_1 Camptotheca_acuminata_1 Capsicum_annuum Catharanthus_roseus Cucumis_melo Gossypium_hirsutum_1 Hevea_brasiliensis Lycopersicon_esculentum_1 Morus_alba Nicotiana_sylvestris Nicotiana_tabacum Raphanus_sativus_1 Solanum_tuberosum_1 Tagetes_erecta_1 ; END; BEGIN TAXA; TITLE Taxa8; DIMENSIONS NTAX=14; TAXLABELS Archeoglobus_fulgidis Archeoglobus_profundus Archeoglobus_veneficus Enterococcus_faecalis Enterococcus_faecium Ferroglobus_placidus Pseudomonas_mevalonii Staphylococcus_aureus Staphylococcus_epidermidis Staphylococcus_haemolyticus Streptococcus_pneumoniae Streptococcus_pyogenes Thermoplasma_acidophilum Thermoplasma_volcanium ; END; BEGIN TAXA; TITLE Taxa9; DIMENSIONS NTAX=22; TAXLABELS Cercomonas_sp. Chlorarachnion_sp. Cyanophora_paradoxa Euglena_gracilis Guillardia_theta Jakoba_incarcerata Jakoba_libera Macropharyngomonas_halophila Malawimonas_jakobiformis Naegleria_gruberi Pisum_sativum Plaesiobystra_sp. Pythium_ultimum Reclinomonas_americana Soginia_sp. Stylonychia_lemnae Toxoplasma_gondii Trimastix_marina Trimastix_pyriformis_pyriformis Trimastix_pyriformis_sulcatus Trypanosoma_brucei Volvox_carteri ; END; BEGIN TAXA; TITLE Taxa10; DIMENSIONS NTAX=14; TAXLABELS Arabidopsis_thaliana Echinococcus_granulosus Flaveria_bidentis Homo_sapiens Medicago_sativa Mesembryanthemum_crystallinum Mycobacterium_leprae Mycobacterium_tuberculosis Sorghum_bicolor Spinacia_oleracea Sus_scrofa Thermus_flavus Trichomonas_vaginalis Zea_mays ; END; BEGIN TAXA; TITLE Taxa11; DIMENSIONS NTAX=13; TAXLABELS Aeropyrum_pernix Archeoglobus_fulgidis Desulfurococcus_mobilis Halobacterium_halobium Halobacterium_marismortui Methanococcus_jannaschii Methanococcus_kandleri Pyrobaculum_aerophilum Pyrococcus_horikoshii Pyrococcus_woesii Sulfolobus_solfataricus Thermococcus_celer Thermoplasma_acidophilum ; END; BEGIN TAXA; TITLE Taxa12; DIMENSIONS NTAX=17; TAXLABELS Arabidopsis_thaliana Caenorhabditis_elegans Candida_albicans Dictyostelium_discoideum Drosophila_melanogaster Euplotes_octocarinatus Giardia_lamblia Homo_sapiens Neurospora_crassa Nicotiana_tabacum Oxytricha_trifallax Plamodium_falciparum Saccharomyces_cerevisiae Schizosaccharomyces_pombe Trichomonas_vaginalis Trypanosoma_brucei Yarrowia_lipolytica ; END; BEGIN TAXA; TITLE Taxa13; DIMENSIONS NTAX=27; TAXLABELS Acrasis_rosea Arabidopsis_thaliana Blastocystis_hominis Caenorhabditis_elegans Cryptosporidium_parvum Cyanophora_paradoxa Dictyostelium_discoideum Dinenympha_exilis Entamoeba_histolytica Euglena_gracilis Giardia_lamblia Hexamita_inflata Homo_sapiens Naegleria_andersoni Nicotiana_tabacum Physarum_polycephalum Phytophthora_capcisi Plasmodium_falciparum Podospora_anserina Porphyra_purpurea Schizosaccharomyces_pombe Spironucleus_barkhanus Stylonychia_lemnae Tetrahymena_pyriformis Trichomonas_vaginalis Trypanosoma_brucei oxymonad ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M604] TITLE 'Eubacterial hsp-70'; LINK TAXA = Taxa4; DIMENSIONS NCHAR=479; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Agrobacterium_tumefaciens VIGIDLGTTNSCVAVMDGKDTKVIENAEGARTTPSMVAFSERLVGQPAKRQAVTNPTNTLFAVKRLIGRRYEDVPFEIVKGDAWVKAQKNYSPSQISAMILQKMKETAESYLGEKVEKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLDKKTIAVYDLGGGTFDISVLEIGVFEVKSTNGDTFLGGEDFDMRLVEYLAGEDKLALQRLKEAAEKAKIELSSSQQTEINLPFITLTRAKFESLVDDLVQRTVAPCKAALKDAGVTAAEIDEVVLVGGMSRMPKVREVVKQLFPHKGVNPDEVVAMGAAIQAGVLQGVKDVLLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSTFSTAEDNQSAVTIRVSQGEREMAQDNKLLGQFDLVGLPPSPRAVPQIEVTFDIDANGIVQVSAKDKGTGKEQQIRIQASGLSDADIEKMVKDAEANAEADKKRRAGVEAKN Borrelia_burgdorferi IIGIDLGTTNSCVAIMEHGKPVVIQNSEGGRTTPSIVAYTERLVGQVAKNQMVTNPENTIYSIKRFMGRRFEEVPYKIEKGDARVNISKQMSPPEISAATLTKMKETAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVKRIVNEPTAAALAYGIEKKIVAVYDLGGGTFDISILELGVFEVKSTNGDTHLGGDNFDDEIIKHLISEDKMALQRLKEAAEKAKIELSGAQEASINLPFITLTRAKFEQMVDHLVQKTKEPCLKAIKDAGLKASDINEVILVGGSTRIPAIQKIVKDIFPNKGVNPDEAVAIGAAIQGGILTGTKDMVLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSVFSTAADNQTSVDIKVLQGEREMAAQNRILGNFILDGIPAAPRGVPQIEVSFDIDANGIVHVSAKDMGTGKEQKIRIESSSLSESEIDRMVKDAEAHAEEDKKLKENIEAKN Bradyrhizobium_japonicum VIGIDLGTTNSCVAVMDGKNAKVIENSEGMRTTPSIVAVTERLVGQPAKRQAVTNPERTFFAVKRLIGRRYDDVPYKIVKGDAWVEADQTYSPSQVSAFILQKMKETAEAHLGQKVDQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKTTIAVYDLGGGTFDISILEIGVFEVKSTNGDTFLGGEDFDMRLVGYLADEDKLALQRLKEAAEKAKIELSSTTQTEINLPFITLTRAKFEALVDDLIQKTVEPCRKALKDAGVTAGEIGEVVLVGGMSRMPKVQEVVKQLFPHKGVNPDEVVAIGAAIQAGVLQGVKDVLLLDVTPLSLGIETLGGVFTRIIDRNTTIPTKKSVFSTAEDNQNAVTIRVFQGEREMAADNKMLGQFDLMGIPPAPRGMPQIEVTFDIDANGIVNVSAKDKATGKEQQIRIQASGLSEADIEKMVKDAEANAEADKKRREAVTAKN Caenorhabditis_elegans VIGIDLGTTNSCVSIMEGKTPKVIENAEGVRTTPSTVAFTERLVGAPAKRQAVTNSANTLFATKRLIGRRYEDVPYKIVKGDAWVEAQKVYSPSQVGAFVLMKMKETAESYLGTTVNNAVVTVPAYFNDSQRQATKDAGQISGLNVLRVINEPTAAALAYGLDKDIIAVYDLGGGTFDVSILEIQVFEVKSTNGDTFLGGEDFDHALVHHLVGEDPQAMQRLREAAEKAKCELSSTTQTDINLPYITLTRAKFEQIVGDLIKRTIEPCRKALHDAEVKSSQIADVLLVGGMSRMPKVQATVQEIFPSKAVNPDEAVAMGAAIQGAVLAGVTDVLLLDVTPLSLGIETLGGIMTKLITRNTTIPTKKSVFSTAADGQTQVQIKVFQGEREMATSNKLLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGLSKDQIENMIKEAEKNAAEDAKRKELVEVIN Caulobacter_crescentus IIGIDLGTTNSCVAIMDGKTPKVIENAEGARTTPSVVAFLERLIGQPAKRQAVTNPTNTLFAIKRLIGRTASDVPYRSSRGDAWVKAHKDYSPQEVSAFILQKMKEAAEAHLGEPVTKAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKNKIAVYDLGGGTFDVSILEIGVFEVKSTNGDTFLGGEDFDLRIVDYLADEDKLALQRLREA-EKAKKELSSTAQYEVNLPFISLSRAKLEALVDDLIARTIGPCEQALKDAGLKKSDIDEVILVGGMSRMPKVQQAVQDFFPHKGVNPDEVVALGAAVQAGVLQGVKDVLLLDVTPLTLGIDTLGGVFTPLIERNTTIPTKRSTFSTADDNQSAVTIRVFQGERAMAQDNKMQGQFDLVGIPPAPRGVPQIEVTFDIDANGIVQVHAKDKATNKEQSIRIQANGLSDSDIERMVKEAEANKAADEKKKQLVEAKN Chlamydia_pneumoniae IIGIDLGTTNSCVSVMEGGQAKVITSSEGTRTTPSIVAFKEKLVGIPAKRQAVTNPEKTLGSTKRFIGRKYSEVPYTVTSGDAVFEVDKQYTPEEIGAQILMKMKETAEAYLGETVTEAVITVPAYFNDSQRASTKDAGRIAGLDVKRIIPEPTAAALAYGIDKVKIAVFDLGGGTFDISILEIGVFEVLSTNGDTLLGGDDFDEVIIKWMIEEDNMALQRLKDAAEKAKIELSGVSSTEINQPFITLTRAQFEKLAASLIERTKSPCIKALSDAKLSAKDIDDVLLVGGMSRMPAVQETVKELFPNKGVNPDEVVAIGAAIQGGVLGGVKDVLLLDVIPLSLGIETLGGVMTTLVERNTTIPTQKKIFSTAADNQPAVTIVVLQGERPMAKDNKEIGRFDLTDIPPAPRGHPQIEVSFDIDANGIFHVSAKDVASGKEQKIRIEASSLQEDEIQRMVRDAEINKEEDKKRREASDAKN Ehrlichia_sennetsu AIGIDLGTTNSCVAIKD----KVIENAEGARTTPSVVAFTQTLVGAPAQRQAVTNAKNTIVASKRLIGRRFKDYPYKIVEGDAWIEAGKSYSPSQVGANVLIKLKEAAETYTGKKVTKAVITVPAYFDDAQRTATKDAGRIAGLEVLRIINEPTAAALAYGLDKTNIAVFDLGGGTFDVSILELGVFEVKATNGDTHLGGEDFDRMILNFLVEEDPLALQRLKEAAEKAKKELSSTQETDINLPYITFTRAKLESLVSDLIDRTIEPCKKALKDSGLKREEINEVVLVGGMTRMPAVVKKVTEFFPHKGVNPDEVVAIGAAIQANILAGAQDIVLLDVTPLSLGIETLGGVFTKLIDRNTTIPTKRSTFSTAEDNQSAVTIRVFQGERQMASDNKLLGQFSLGGIPPAPRGMPQIEVTFDIDANGIVHVSAKDKGTGKEQTVKIQASGLTEEEIKKMVDEAASKADEDKKRRELVEAKN Ehrlichia_sp. IIGIDLGTTNSCVAVMEAGTAKVIENSEGSRTTPSVVAFTERLVGELAKRQANINAQNTIYASKRIIGRRYDDCPYEVFPGDAWIRAKEGYSPVQIGAFVLEKIKETAERYFGAPVKKAVITVPAYFNDAQRQATKDAGTIAGLDVVRIINEPTAAALAYGLDKGTIVVYDLGGGTFDVSVLEIAVFEVKATNGDTKLGGEDFDNAIMEHMMESDPMAVQRVKEAAEKAKIELSTRLETDITLPFISLSRAKFEGLVDELIERTIEPCKKALSDAGIKNSKVDEVVLVGGMTRVPKVIQRVKDFFPCQGVNPDEVVAVGAAIQGGILTGVRDVLLLDVAPLSLGIETLGGVFTPLIERNTTIPTKKSVFSTAEDGQTAVTIKVYQGERKMAIDNKLLGQFSLEGIPHAPRGVPQIEVTFDIDANGIVHVSAKDKASGKEQTIKIQSSGLSDEEIKKMVKDAQDRAEDDEKRKKHVELKN Eimeria_tennela VVGIDLGTTNSCVAVMEGSQPKVLENSEGMRTTPSVVAFTQRLVGVVAKRQAITNPENTFFSTKRLIGRSFDELPYKVIRGDAWVEGWKKYSPSQIGAFVLMKMKETAESYLGRDVNQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAYGMEKETIAVYDLGGGTFDVSILEILVFEVKATNGNTSLGGEDFDQKVLQFLVNEDRLALQRLREAAETAKIELSSKLSTEINLPFITLSRAHLEELVGALLQQSIEPCEKCIRDAGVQKADLSDVILVGGMTRMPKVAEVVKNIFPSKGVNPDEAVAAGAAIQAGVLKGIKDLLLLDVCPLSLGIETLGGVFTRLINRNTTIPTKKSIFSTAADNQTQVGIKVYQGEREMASANKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIMNISAVDKSTAKRQQITIQSSGLSEAQIKQMVEDAERFKDEDQRQKDLVAAKN Francisella_tularensis IIGIDLGTTNSCLAIMDGKTAKVIENAEGHRTTPSVVAYTEILVGQAAKRQAVTNPDNTFFAIKRLIGRKYDDVPYAVIKGDAWVATKKKMAPPQVSAEVLRKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGKIAGLEVKRIINEPTAAALAYGVDSKTVAVYDLGGGTFDISIIEISQIEVLSTNGDTFLGGEDFDLALMNYLIDEDKLALQRVREAAEKAKVELSPAQQTDVNLPYITVTRAKFESLVSDLVMRSLEPCKKALEDAGLSKSDITEVLLVGGQTRMPLVQEKVKEFFPRKDVNPDEAVAVGAAIQGGVLAGVKDVLLLDVTPLSLGIETMGGVMTKLIERNTTIPTKKSVFSTAEDNQPAVTIHVLQGEREMASANKSLGRFDLADIPPAPRGMPQIEVTFDIDANGILNVSAKDKATGKEQNIVIKSSSLSEEDIEKMVQDAEANAEADKKFHDLVTARN Haemophilus_ducreyi IIGIDLGTTNSCVAVMDGDKPRVLENAEGARTTPSIIAYTETLVGQPAKRQAITNPKNTLFAIKRLIGRRFTDMPFEIAKGDAWVNVKDKLAPPQISAEVLKKMKKTAEDFLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDSKIIAVYDLGGGTFDISIIEIDTFEVRATNGDTHLGGEDFDNRVINYLVEEDPMAMQRVKEAAEKAKIELSSAQETEVNLPYITVTRAKLEALVEDLVSRSLEPLKTALADAGLSVSEINDVILVGGQTRMPLVQKKVADFFPRKDVNPDEAVAIGAAVQGGVLAGVTDVLLLDVTPLSLGIETMGGVMTSLIEKNTTIPTKKSVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLEGINPAPRGMPQIEVTFDIDANGIINVSAKDKNTGKEQQIKIQASSLSDEEVEQMVRDAEANAESDRQFEELVQTRN Legionella_pneumophila IIGIDLGTTNSCVAVMEGDKPKVIENSEGHRTTPSIVAFTEILVGQSAKRQSVTNPEKTLFAIKRLIGRRFDDVPYKIMKGDAWVRVKQDKAPPQISAEVLRKMKKTAEDYLGEEVKEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAYGMDKKVIAVYDLGGGTFDISIIEIAQFEVLATNGDTFLGGEDFDLALIEYLASEDPLALQRLKEAAEKAKIELSSAQQTDVNLPYITLTRAKLESLVEKLVERTIEPCKTALKDAGLTVSQINEVILVGGQTRMPLVQKTVEEFFPRKDVNPDEAVAVGAAIQAAVLSGVKDILLLDVTPLSLGIETMGGVMTKLIEKNTTIPTKATVFSTADDNQTAVTVHVLQGEREQASANKSLGRFDLRDIPPAPRGVPQIEVTFDIDANGILNVSAKDKATGKAQSIVIKASSLSEEEVAAMVKDAQSHAEEDKKFKEMAELRN Leishmania_major VIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDVPYKIVRGDAWVQDGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKTLIAVYDLGGGTFDISVLEIAVFEVKATNGDTHLGGEDFDLALSDYILEEERMALQRVREAAEKAKCELSSAMETEVNLPFITISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRIRSGGGGEEVLPPVRGVNPDEAVALGAATLGGVLRGASDLILVDVTPLSLGTSVVGDVFVPIIPKNTTIPCMRSIFTTVDDGQTAIKFKVFQGEREIASENQIRGEFDLSGIPPAPRGVPQVEVTFDIDANGICHVTAKDKATGKTQNITITANGLSKEQIEQMIRDSEQHAEADRVKRELVEVRN Leptospira_interrogans IIGIDLGTTNSVVSVMEGGDPVVIQNSEGARTTPSIVAFTETLIGQFAKNQAITNAVNTIRSAKRFIGRRLNEVSYKVIRGNEGVKFEGEFTPQEISARVLMKMKQTAEDYLGQKVTKAVITVPAYFNDEQRQATKDAGRIAGLEVERIINEPTAAALAYGFDKKKIAVYDLGGGTFDISILELAVFEVKSTNGDTHLGGDDFDMAIMEWMISEDKNTVQRLKEAAEKAKIELSGTMSTQINLPFITLTRAKFDQLTKSLVDRTRIPCENALRDAGLKASDINEVILVGGSIRIPAVQELVKQVFPNKSVNPDEVVAIGAAIQGGVLAGVSDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSVFSTAADNQSAVSIHVLQGEREMASANRTLGRFDLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDLGTGKEQKIRIESSSLSEDEIQKMVKDAEAHAAADKAQREVIEAKN Mus_musculus VVGIDLGTTNSCVAVMEGKQAKVLENAEGARTTPSVVAFTERLVGMPAKRQAVTNPNNTFYATKRLIGRRYDDVPFKIVRGDAWVEAHKLYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYFNDSQRQATKDAGQISGLNVLRVINEPTAAALAYGLDKSVIAVYDLGGGTFDISILEIQVFEVKSTNGDTFLGGEDFDQALLRHIVKEDNMALQRVREAAEKAKCELSSSVQTDINLPYLTLTRAQFEGIVTDLIKRTIAPCQKAMQDAEVSKSDIGEVILVGGMTRMPKVQQTVQDLFPSKAVNPDEAVAIGAAIQGGVLAGVTDVLLLDVTPLSLGIETLGGVFTKLINRNTTIPTKKSVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSSGLSKDDIENMVKNAEKYAEEDRRKKERVEAVN Phaseolus_vulgaris VIGIDLGTTNSCVSVMEGKNPKVIENSEGARTTPSVVAFNELLVGTPAKRQAVTNPTNTVFGTKRLIGRRFDDVPFKIVKGDAWVEANQQYSPSQIGAFVLTKMKETAEAYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKLIAVFDLGGGTFDVSILEISVFEVKATNGDTFLGGEDFDNALLDFLVNEDRLALQRLREAAEKAKIELSSTSQTEINLPFITLTRSKFEALVNHLIERTKAPCKSCLKDANVSIKDVDEVLLVGGMTRVPKVQEVVLNIFPSKGVNPDEAVAMGAAIQGGILRGVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSVFSTAADNQTQVGIKVLQGEREMASDNKMLGEFDLVGIPPAPRGLPQIEVTFDIDANGIVTVSAKDKSTGKEQQITIRSSGLSEDEIEKMVKEAELHAQKDQERKTLIDIRN Pisum_sativum VIGIDLGTTNSCVSVMEGKNPKVIENSEGARTTPSVVAFNELLVGTPAKRQAVTNPTNTLFGTKRLIGRRFDDVPYKIVRGDAWVEANQQYSPSQIGAFVLTKIKETAEAYLGKTISKAVVTVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKLIAVFDLGGGTFDVSILEISVFEVKATNGDTFLGGEDFDNALLDFLVSEDKLALQRLREAAEKAKIELSSTSQTEINLPFISLTRSKFEALVNNLIERTKAPCKSCLKDANISIKDVDEVLLVGGMTRVPKVQQVVSEIFPSKGVNPDEAVAMGAALQGGILRGVKELLLLDVTPLSLGIETLGGIFTRLISRNTTIPTKKSVFSTAADNQTQVGIKVLQGEREMAADNKSLGEFDLVGIPPAPRGLPQIEVTFDIDANGIVTVSAKDKSTGKEQQITIRSSGLSDDEIDKMVKEAELHAQRDQERKALIDIRN Rhodobacter_capsulatus VIGIDLGTTNSCVAIMDGSQPRVIENSEGARTTPSIVAYTERLVGQPAKRQAVTNPTNTVFAVKRLIGRRTTDVPYNIVDGDAWVEVREKFSPAQVSAVILQKMKETAESYLGETVTQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKTIAVYDLGGGTFDISVLEIDLFEVKSTNGDTFLGGEDFDMRIVNYLADEDKMALQRLKEAAEKAKIELSSASQTEINQPFISLTRAKLESLVDDLIKASLKPCAAALKDAGVSKDEIDEVVLVGGMTRMPRVVEEVTKFFPHKGVNPDEVVALGAAIQAGVLQGVKDVVLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSIFSTAEDNQNAVTIRVFQGEREMAADNKMLGMFNLENIPPAPRGVPQIEVTFDIDANGIVSVKAKDKGTGKEQQITIQASGLSDDDIEKMIKDAEANAEADKKRKELVEAKN Rickettsia_prowazekii VIGIDLGTTNSCVAVMEGKEPKVIDNAEGERTTPSIIAFAERLVGQPAKRQAVTNPRNTIYAVKRLIGRNFTDVPYNIVKGDAWVEADHKYSPSQISAFILQKMKETAENYLGEKVTQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGFEKSTIAVYDLGGGTFDVSILEISVFEVKSTNGDTFLGGEDFDTRILNHLIEVDPLALQRLKEAAEKAKKELSSTSTTDINLPYITFTRAELEKLVDDLIEKTIEPCRQALKDAGFKPNDIQEVVLVGGMTRMPKVQEAVKKFFPHKGVNPDEVVALGAAIQGGVLNKVTDILLLDVTPLSLGIETLGGVFTRLIDRNTTIPSKKSVFSTADDNQHAVTIRVFQGEREMAKDNKLLGQFNLEGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKASGKEQKVTIQASGLSDAEIEQMVKDAEHNADEDKKRKELIETKN Saccharomyces_cerevisiae VIGIDLGTTNSAVAIMEGKVPKIIENAEGSRTTPSVVAFTERLVGIPAKRQAVVNPENTLFATKRLIGRRFEDVPYKIVKGDAWVEARQTYSPAQIGGFVLNKMKETAEAYLGKPVKNAVVTVPAYFNDSQRQATKDAGQIVGLNVLRVVNEPTAAALAYGLEKSVVAVFDLGGGTFDISILDIDVFEVKSTNGDTHLGGEDFDIYLLREIVSRDRMAIQRIREAAEKAKIELSSTVSTEINLPFITFSRAQFETLTAPLVKRTVDPVKKALKDAGLSTSDISEVLLVGGMSRMPKVVETVKSLFPSKAVNPDEAVAIGAAVQGAVLSGVTDVLLLDVTPLSLGIETLGGVFTRLIPRNTTIPTKKSIFSTAAAGQTSVEIRVFQGERELVRDNKLIGNFTLAGIPPAPKGVPQIEVTFDIDADGIINVSARDKATNKDSSITVAGSSLSENEIEQMVNDAEKFKSQDEARKQAIETAN Schizosaccharomyces_pombe VIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTERLVGVSAKRQAVINPENTFFATKRLIGRRFKEVPYKIVEGDAWLEARKTYSPSQIGGFILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLRVVNEPTAAALAYGLDKKIVAVFDLGGGTFDISILELNVFEVRSTNGDTHLGGEDFDVALVRHIVETDRLAVQRIREAAEKAKCELSSLSKTDISLPFITISRAQFEKLVDPLVRRTIDPCKRALKDANLQTSEINEVILVGGMTRMPRVVETVKSIFPAKSVNPDEAVAIGAAIQGGVLSGVKDLVLLDVTPLSLGIETLGGVFTRLINRNTTIPTRKSVFSTAADGQTAVEIRVFQGERELVRDNKLIGNFQLTGIAPAPKGQPQIEVSFDVDADGIINVSARDKATNKDSSITVAGSSLTDSEIEAMVADAEKYRASDMARKEAIENGN Trichomonas_vaginalis IIGIDLGTTNSCVSVVEGGTPKVIQNAEGVRTTPSIVAFTERLVGEQAKRQAITNSKSTFFATKRLIGCSFDDVPYQIVKGDAWVKDENEYSPSQIGAFVLMKMKETAEAYLGTSVKDAVITVPAYFNDSQRQATKDAGKIAGLNVMRTLNEPTAAALAYGTERKTVAVFDLGGGTFDFSILEISVFEVKATNGDTFLGGEDFDAALMKYVIQDDPLALQRIREAVEKAKCELSSMMTTEINLPYITITRATFEKITQHLIARTINPCKNCLKDAGLTPQQINEVILVGGMTRMPKVIDSVKEFFPFRGVNPDEVVAIGASIQGSVMRGHKDIVLLDVTPLSLGIETMGGVFSRLIPRNTVVPTKKSEFTTAADGQTHVNIRVFQGERDLVEGNKLLGEFTLVGIPPAPRGVPKIEVTFDIDANSIVHVSAKDKQTNKEQQMTIQQHGLSQDEIAKMIQDAEKHAAEDKKKREILEKKY Trypanosoma_cruzi VIGIDLGTTYSCVAVMEGDKPRVLENTEGFRATPSVVAFKEKLVGLAAKRQAVTNPQSTFFAVKRLIGRRFEDVPYKIGRGDAWVQDAKQYSPSQVGAFVLEKMKETAENFLGRKVSNAVVTCPAYFNGPQRQATKDAGTIAGLNVIRVVNGPTAAALAYGLDKTMIAVYDLGGGTFDISVLEIAVFEVKATNGDTHLGGEDFDLCLSDYILTEERMALQRIREAAEKAKCELSTTMETEVNLPFITVSRSKFESLAEKLVQRSLGPCKQCIKDAAVDLKEISEVVLVGGMTRMPKVIEAVKQFFPFRGVNPDEAVALGGATLGGVLRRVKGLVLLDVTPLSLGVETLGGVFTRMIPKNTTIPTKKSFFSTAAFNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIEPNGICHVTAKDKATGKTQNITITASGLSKEQIERMIRDSESHAESDRLKRELVEVRN ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M609] TITLE 'Eukaryotic beta-tubulin'; LINK TAXA = Taxa9; DIMENSIONS NCHAR=431; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Cercomonas_sp. --------------IGAKFWEVISDEHGIDPTGTYRGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRAGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKESESCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRMMCTFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMVIDNEASYDICFRTLKLTTPTYGDLNHLVSASMSGITCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMCASDPRHGRYLTAAAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMAVTFVGNSTSIQEMFKRVSEQFTLMFRRKAFLHWYTGEG------------------------------ Chlorarachnion_sp. --------------IGSKFWEVVSDEHGVDPTGSYQGESDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLVSKIREEYPDRMMCTFSVFPSPKVSDTVVEPYNAVLSFHQLVENSDECFGLDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTCCLRFPGQLNADLRKLAVNLIPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMCASDPRHGRYLTAAAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSAVCDIPPKGLKMSTTFVGNSTCIQEMFQRVSAQFTMMFRRKAFLHWYTGEG------------------------------ Cyanophora_paradoxa REIVHVQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPYGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSMGGGTGSGMGTLLIAKVREEYPDRMMCTYSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMVIDNEALYDICFRTLKLTTPTYGDLNHLVSACISGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFVPLTSRGSQQYRALTVPELTQQMFDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKASVCDIPPKGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEE Euglena_gracilis REIVHIQAGQCGNQIGSKFWEVISDEQGVDPP-DIPGDSDLQLERINVYYNEATGGRYVP-AILMDLEPGTMDSVRAGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGPELIDSVLDVVRKEAESCDCLQGFQIAHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVIPSPKVSDTVVEPYNTTLSVHQLVENADEVMCIGNEALYDICLPTLKLTTPTFG-HETLVSAVMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFLVGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAASDPAHGRYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSATFIGNNTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATVEE Guillardia_theta --------------IGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAVLMDLEPGTMDSVRAGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQISHSLGGGTGAGMGTLLISKIREEYPDRIMLTFSIVPSPKVSDTVVEPYNATLSVHQLVENADECFCIDNEALYDICFRTLKLTTPTFGDLNHLVSAVMSGVTCSLRFPGQLNSDLRKLAVNIVPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMCAADPRHGRYLTAAAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKASVCDIPPKGLKMAVNFIGNSTAIQEMFKRVSEQFTGMFRRKAFLHWYTGEG------------------------------ Jakoba_incarcerata --------------IGAKFWEVISDEHGIDPTGTYRGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQISHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMCIDNEALYDICFRTLKLTTPTFGDLNHLVSAVMSGVTCSLRFPGQLNADLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAAADPRHGRYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMAVNFVGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEG------------------------------ Jakoba_libera --------------IGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPYGQLFCPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQIAHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVVPSPKVSDTVVEPYNATLSVHQLVENADEVMCIDNEALYDICFRTLKLTTPTFGDLNHLVSAVMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMAVTFIGNSTAIQELFKHVSEQFTAMFRRKAFLHWYTGEG------------------------------ Macropharyngomonas_halophila --------------IGSKFWEVISDEHGIDPTGAYDGDSDLQLERINVYYNEATGGRYVPRSILMDLEPGTMDSVRAGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQIAHSLGGGTGSGMGTLLISKIREEYPDRMLSTFSVFPSPKVSDTVVEPYNATLSIHQLVENSDEVMCIDNEALYDICFRTLKLTTPTFGDLNHLVSVVMSGVTCCLRFPGQLNSDLRKLAVNLVPFPRLHFFMIGFAPLTSRGSQQYRALSVPELTQQMFDAKNMMAASDPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFIEWIPNNIKSSVCDIPPRGLKMSSAFIGNSTAIQEMFKRVNEQFSSMFRRKAFLHWYTGEG------------------------------ Malawimonas_jakobiformis --------------IGAKFWEVISDEHGVDPTGAYHGDSDLQLERINVYFNEATGGKYVPRAVLVDLEPGTMDSVRAGPFGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQICHSLGGGTGSGMGTLLIAKIREEYPDRMMCTFSVVPSPKVSDTVVEPYNATLSVHQLVENADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELVQQMFDAKNMMAASDPRHGRYLTAAAVFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKAAVCDIPPKGLKMSVTFVGNCTAIQELFKRVSEQFTAMFRRKAFLHWYTGEG------------------------------ Naegleria_gruberi REIVHIQAGQCGNQIGAKFWEVISDEHGVDPTGAYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQIAHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMCIDNEALYDICFRTLKLTTPTFGDLNHLVSIVMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFLIGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAASDPRHGRYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPRGLKMAATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEE Pisum_sativum RQILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERIDVYYNEASGGRFVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMVLDNEALYDICFRILKLSNPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRTLSVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAD- Plaesiobystra_sp. --------------IGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQIAHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMCIDNEALYDICFRTLKLTTPTFGDLNHLVSAVMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFLIGFAPLTSRGSQQYRALTVPELTQQMFDTKNMMAASDPRHGRYLTATAMFRGRLSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMAATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEG------------------------------ Pythium_ultimum RELVHIQGGQCGNQIGAKFWEVISDEHGVDPTGSYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQPGAGNNWAKGHYTEGAELIDSVLDVARKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRIMCTYSVCPSPKVSDTVVEPYNATLSVHQLVENADEVMCLDNEALYDICFRTLKLTTPTYGDLNHLVCAAMSGITTCLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQQFDAKNMMCAADPRHGRYLTAACMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKASVCDIPPKGLKMSTTFVGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEE Reclinomonas_americana --------------IGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAVLMDLEPGTMDSVRAGPYGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQIAHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVVPSPKVSDTVVEPYNATLSVHQLVENADEVMCIDNEALYDICFRTLKLTTPTFGDLNHLVSAVMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMAVTFIGNSTAIQELFKRVSEQFTATFRRKAFLHWYTGEG------------------------------ Soginia_sp. --------------IGSKFWEVIADEHGVDPTGTYHGDSDLQLERINVYFNEAAGGRYVPRAVLMDLEPGTMDSVRAGPYGQMFRPDNFIFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQIAHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMCIDNEALYDICFRTLKLTTPTFGDLNHLVSAVMSGVTCCLRFPGQLNSDLRKVAVNLIPFPRLHFFLIGFAPLTSRGSQKYRHLTVPELTQQMFDAKNMMAASDPRHGRYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLRMAATFVGNSTAIQEMFKRVSEQFTVMFRRKAILHWYTGEG------------------------------ Stylonychia_lemnae REIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKVREEYPDRIMATFSVVPSPKVSDTVVEPYNATLSVHQLVENADEVMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAGISGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMTGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMCASDPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMAVTFLGNSTAIQEMFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAED Toxoplasma_gondii REIVHVQGGQCGNQIGAKFWEVISDEHGIDPTGTYCGDSDLQLERINVFYNEATGGRFVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKVREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVQVIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTCCLRFPGQLNSDLRKLAVNLVPFPRLHFFLIGFAPLTSRGSQQYRALSVPELTQQMFDAKNMMCASDPRHGRYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNMKSSVCDIPPKGLKMSVTFVGNSTAIQEMFKRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEE Trimastix_marina --------GQCGNQIGAKFWEVISDEHGIDPTGAYHGESELQLERINVYFNEATGGKYVPRAVLVDLEPGTMDSVRAGPFGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQIAHSLGGGTGSGMGTLLIAKIREEYPDRMMCTFSVVPSPKVSDTVVEPYNATLSVHQLVENADEVMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGITCCLRFPGQLNSDLRKLAVNLIPFPRLHFFLVGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAASDPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSVTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEG------------------------------ Trimastix_pyriformis_pyriformis --------GQCGNQIGAKFWEVISDEHGIDPTGNYHGESELQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRAGPFGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQIAHSLGGGTGSGMGTLLIAKIREEYPDRMMCTFSVVPSPKVSDTVVEPYNATLSVHQLVENADEVMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGITCCLRFPGQLNSDLRKLAVNLIPFPRLHFFLVGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAASDPRHGRYLTASALFRGRMSSKEVDEQMLNVQNKNSSYFVEWIPNNIKSSICDIPPKGLKMAVTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEG------------------------------ Trimastix_pyriformis_sulcatus --------GQCGNQIGAKFWEVISDEHGIDPTGASHGESDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRAGPFGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQIAHSLGGGTGSGMGTLLIAKIREEYPDRMMCTFSVVPSPKVSDTVVEPYNATLSVHQLVENSDEVMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGITCCLRFPGQLNSDLRKLAVNLIPFPRLHFFLVGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAASDPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSICDIPPKGLKMAVTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEG------------------------------ Trypanosoma_brucei REIVCVQAGQCGNQIGSKFWEVISDEHGVDPTGTYQGDSDLQLERINVYFDEATGGRYVPRSVLIDLEPGTMDSVRAGPYGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVCCKEAESCDCLQGFQICHSLGGGTGSGMGTLLISKLREQYPDRIMMTFSIIPSPKVSDTVVEPYNTTLSVHQLVENSDESMCIDNEALYDICFRTLKLTTPTFGDLNHLVSAVVSGVTCCLRFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMQAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFIEWIPNNIKSSVCDIPPKGLKMAVTFIGNNTCIQEMFRRVGEQFTLMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATIEE Volvox_carteri REIVHIQGGQCGNQIGAKFWEVVSDEHGIDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVVPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPTFGDLNHLISAVMSGITCCLRFPGQLNADLRKLAVNLIPFPRLHFFMVGFTPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDASAEE ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M607] TITLE 'Plant HMG-CoA'; LINK TAXA = Taxa7; DIMENSIONS NCHAR=251; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . ] Arabidopsis_thaliana_1 EMPVGYIQIPVGIAGPLLLDGYEYSVPMATTEGCLVASTNRGCKAMATSTVLKDGMTRAPVVLKFFLDTLAVVFNRSSRFLQSVKCTIYVRFCCSTGDAMGMNMVSKGVQNVLEYLMDVIGISGNFSVVCEAVIRGEIVNTSVAALVELNMLSAVAGSLFASNIVSAVFIATGQDPAQNVEITMMEIHISVTMPIEVGTVGGGQLASQSACLNLLGVARRIVAGAVLAGELSLMSAIAAGQLVRSHMKYNR Artemisia_annua_1 EMPIGYVQVPVGVAGPLLLNGGEFMVPMATTEGCLVASTNRGCKAIATAILLKDGMTRAPVVLKFYLDTLSVVFNKSSRFLQNIQCSIYIRFTCSTGDAMGMNMVSKGVQNVLDFLMDVIGISGNFSVVCEAVITEEVVRTTVPALVELNMLSAIAGSLFAANIVSAVFIATGQDPAQNIEITMMELHVSVTMPIEVGTVGGGQLASQSACLNLLGVAQLIVAGSVLAGELSLMSAISAGQLVKSHMKYNR Camptotheca_acuminata_1 EMPVGYVQIPVGIAGPLLLDGREYSVPMATTEGCLVASTNRGCKAIATSVLLRDAMTRAPVVLKFFLETLAAVFNSSSRFLQNIKCAIYMRYSCSTGDAMGMNMISKGVQNVLDFLMDVIGISGNYSVVCEAVIKEEVVKTNVASLVELNMLSAMAGALFASNIVSAVYLATGQDPAQNVEITMMELHVSVTMPIEVGTVGGGQLASQSACLNLLGVARLIVAGSVLAGELSLMSAIAAGQLVNSHMKYNR Capsicum_annuum EMTIGYVQIPVGIAGPLLLNGREYSVPMATTEGCLVASTNRGCKAIATSILLRDGMTRAPCVLKFFVETLANVFNQSSRFLQRIQCAIHMRFVCSTGDAMGMNMVSKGVQNVLDYLMDVIGISANFSVVCEAIITEEVVKTEVAALVELNMLSALAGALFASNIVSAVYIATGQDPAQNIEITMMELHISVTMPIEVGTVGGGQLASQSACLNLLGVARLIVAGSVLAGELSLMSAISAGQLVNSHMKYNR Catharanthus_roseus EMPVGYVQLPVGIAGPLLLDGREYMLPMATTEGCLVASTNRGCKAIANSVLLRDGMTRAPVVLKFYMETISVVFNKSSRFLQSVQCAIYIRFSCSTGDAMGMNMVSKGVQNVLEFLMDVLGISGNFSVVCEAIIKEEIVKTEVAALIELNMVSAIAGALFASNIVSAIFIATGQDPAQNVEITMMELHISVTMPIEVGTVGGGQLASQSACLNLLGVSRLIVAGSVLAGELSLMSAISAGQLVRSHMKYNR Cucumis_melo EMPVGYVQIPVGIAGPLLLDGFEYTVPMATTEGCLVASTNRGCKAIATSMLLKDGMTRAPVVLKFFLDTLAVVFNRSSRFLQSIRCSIYVRFCCSTGDAMGMNMVSKGVQNVLEFLMEVIGISGNFSVVCEAVIKDEVVRTSVASLVELNMLSAMAGALFSSNIVSAIFLATGQDPAQNVEITMMELHISVTMPIEVGTVGGGQLASQSACLNLLGVSRLIVAGSVLAGELSLMSAIAAGQLVRSHMKYNR Gossypium_hirsutum_1 EMPVGYVQIPVGIAGPLLLNGREYSVPMATTEGCLVASTNRGCKAIATSILLKDGMTRAPVVLKFYLDTLAVVFNRSSRFLQSIKCAIYLRFTCSTGDAMGMNMVSKGVQNVLDFLMDVIGISGNFSVVCEAIIEGDVVRTSVESLVELNMLSAMAGALFASNIVTAIYIATGQDPAQNVEITMMELHISVTMPIEVGTVGGGQLASQSACLNLLGVSRMIVTGAVLAGELSLMSALAAGQLVKSHMKYNR Hevea_brasiliensis EMAIGYVQIPVGIAGPLLLDGKEYTVPMATTEGCLVASANRGCKAIATSVLLRDGMTRAPVVLKFFMDTIAVVFNKSSRFLQSVQCAIYMRFSCSTGDAMGMNMVSKAVQNVIDYLMDVIGLTGNFSVVCEAIIKEEVVKTNVAALVELNMISAVAGSLFASNMVTAVYIATGQDPAQNVEITMMELHISVSMPIELGTVGGGQLASQSACLNLLGVSRLIVAGSVLAGELSLMSAIAAGQLVNSHMKYNR Lycopersicon_esculentum_1 EMPIGYVQIPVGIAGPLLLNGKEFSVPMATTEGCLVASTNRGCKAIATCILLRDGMTRAPCVLKFFVETLANVFNQSSRFLQRIQCAIYMRFVCSTGDAMGMNMVSKGVQNVLDYLMDVIGISGNFSVVCEAIITEEVVKTEVAALVELNMLSAMAGALFASNIVSAVFIATGQDPAQNIEITMMELHISVTMPIEVGTVGGGQLASQSACLNLLGVARLVVAGSVLAGELSLMSAISSGQLVNSHMKYNR Morus_alba EMPVGYVQIPVGIAGPLLLDEFEYSVPMATTEGCLVASTNRGCKAIATSVLLRDGMTRAPVVLKFFVDTLAVVFNRSSRFLQGIQCAIYMRFSCSTGDAMGMNMVSKGVQNALDYLMDIIGISGNFSVVCEAVIKEEVVKTNVDALVELNMLSAVAGALYASNIVSAVFIATGQDPAQNIEITMMELHISVTMPIEVGTVGGGQLASQSACLNLLGVARLIVAGSVLAGELSLMSAIAAGQLVKSHMKYNR Nicotiana_sylvestris EMPIGYVQIPVGIAGPLLLDGREYSVPMATTEGCLVASTNRGCKAIATSVLLRDGMTRAPCVLKFFVETLAAVFNQSSRFLQRIQCAIYMRFVCSTGDAMGMNMVSKGVQNVLDYLMDVIGISGNFSVVCEAIITEEVVKTEVAALVELNMLSAMAGALFASNIVSAVYIATGQDPAQNIEITMMELHVSVTMPIEVGTVGGGQLASQSACLNLLGVARLIVAGSVLAGELSLMSAISAGQLVKSHMKYNR Nicotiana_tabacum EMPVGYVQIPVGIAGPLLLDGREYSVPMATTEGCLVASTNRGCKAIAISVLLRDGMTRAPVVLKFFVETLSLVFNKSSRFLQSIQCAIYMRFSCSTGDAMGMNMVSKGVQNVLDYLMDVIGISGNFSVVCEAIITEEVVKTEVASLVELNVLSAMAGALFASNIVSAVYLATGQDPAQNVEITMIELHISVTMPIEVGTVGGGQLASQSACLNLLGVARLIVAGSVLAGELSLMSAISAGQLVKSHMKYNR Raphanus_sativus_1 EMPVGYVQIPVGIAGPLLLDGCEYSVPMATTEGCLVASTNRGCKAMGTSTVVKDGMTRAPVVLKFYLDTLAVVFNRSSRFLQSVKCTLYVRFSCSTGDAMGMNMVSKGVQNVLEFLMDVIGISGNFSVVCEAVIRGEIVNTSVAALVELNMLSAVAGSLFASNIVSAVFIATGQDPAQNVEITMMEIHVSVTMPIEVGTVGGGQLASQSACLNLLGVSRTIVAGAVLAGELSLMSAIAAGQLVKSHMKYNR Solanum_tuberosum_1 EMPIGYVQIPVGIAGPLLLNGKEFSVPMATTEGCLVASTNRGCKAIATCIVLRDGMTRAPCVLKFFVETLANVFNQSSRFLQRIQCAIYMRFVCSTGDAMGMNMVSKGVQNVLDYLMDVIGISGNFSVVCEAIITEEVVKTEVAALVELNMLSAMAGALFASNIVSAVFIATGQDPAQNIEITMMELHISVTMPIEVGTVGGGQLASQSACLNLLGVARLVVAGSVLAGELSLMSAISAGQLVNSHMKYNR Tagetes_erecta_1 EMPVGYVQIPVGIAGPLLLNGTEFSVPMATTEGCLVASTNRGCKAIATCILLKDGMTRAPVVLKQFLDTLAVVFNKSSRFLQSVQCAIYNRFCCATGDAMGMNMVTKGVQNVLDFLMDVMGISGNYSVVCEAIIKEEVVQTTVPALVELNMLSAMAGALFASNIVSAVYLATGQDPAQNVEITMMELHVSVTMPIEVGTVGGGQLASQSACLNLLGVARVIVAGSVLAGELSLMSAISAGQLVKSHMKYNR ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M603] TITLE Eukaryotic_HBS1; LINK TAXA = Taxa3; DIMENSIONS NCHAR=269; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . ] Arabidopsis_thaliana STLSGRLLHLLGRISQKQMHKYKEAKLQGKSFAYAWALDESAEERERGITMTVAVAYFNSKRHHVVLLDSPGHKDFVPNMIAGATQADAAILVIDATREHARVLRGFGVEQVIVAINKMDGYSKERFDLIWIPLSAMENQNLSWYPCLLDAVDPDRDVSKPLLMPICDAGKLEAGAVRGSKVMVMPSGDQGTIRSLRDARAGDNVALAILLGSQLEFHVHHAKEAATVVKLVAMLDRCLTAKQSAMLEVSPVCVETFSESRALGRVFLR Caenorhabditis_elegans STLMGHLLHDLEVVDSRTIDKFHEAARNGKSFAYAWVLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATKEHALLLRSLGVTQLIVAVNKLDDWSQDRFDEIFVPVSGFTGENLDWYPCLLELIDPQPPSDGPLRIGISDVGKIESGEVEDDKVYIMSSVTAATVKECANCFAGDYILLTIIKGAKAELYAHSLCVPCTFTNLLYTINRFIAKGASAVVEIEDIAIETFTSCRALGRVTFR Candida_albicans STLMGRLLYDFGIIDAKTVNKLKEAEKAGKSFALAWVMDQTEEERSHGVTVDICATDFETDTTKFTAIDAPGHKDFVPQMISGVSQADFALLVVDSTKEHTILAKNFGLEKICVAVNKMDNWDEHRFDAIFIPISGLTGNNVKWYPTLAEYIERDSLASEPFFLSVHDVGKVSSGVISGETIVALPSGESLQVQSLVSAISGELAQIALLVGTPFVLFRNNTQVPARVSKIVEVVNLHLVSRQTAIVEIAALPVTKFDDNKVLGRIVIR Dictyostelium_discoideum STTIFHILFKLGYVDKRTMSKFNESNRMGKSFHFAWVLDEQEEERERGVTMDVCVRYFETEHRRITLLDAPGHRDFIPNMISGTTQADVAILLINATKEHALLAKSLGIMELIVAVNKMDEWDQSRYDYIFIPISGFTGENLKWYPTLIECIDGERLLNKPFRMNISDVGKIEAGLLGGDKILISPGNDICTIKSIRNAVGGDNVDLSMTNGYQVVFHAHSMEEPATITRLISLLDRCISDTCTALVEITLSCLELYSSYRQLGRFTLR Drosophila_melanogaster STLMGHLLYDTGNVSQRVMHKHQESKKLGKSFMYAWVLDETGEERARGITMDVGQSRIETKTKIVTLLDAPGHKDFIPNMISGATQADVALLVVDATREHAILVRSLGVNQLGVVINKLDGWSQDRFTEIFTPCSGLTGENLNWYRHLLDVIEPERAIDRPLRMSVSDIGRVETGVLCNDKVLVGASREQAQVKSLMNVFAGDQVSVTITMGFPVLLHHQSLIEPAVVCKLTASIHRCLGNNSCALVELEPICIERYADFKELGRVMLR Giardia_lamblia STIFGHLAVLSGSVSMRERTRTALADTYNKTFSYAFLLDTNDEERQRGVTMDVELGDNYSVPHTVFLQDCPGHRDFVPSLIRAVSQPDAAVLVLDATREHLQLLMIFGVKHIMVAVNKLDDWNEGRFVEIFIPVSGIDGSHNDWVHTSLGEEIQIKGEKTSPTIILFDVCVVESGILQSDSIVHLPSMYLFQIVSIVDAVAYDTVTLYISVGDVYDCYVGSSRVEARVHKINAQINPLVGKSAYVRMTLIAVIVKEFSKSKLMGRMILR Homo_sapiens STLMGHMLYLLGNINKRTMHKYQESKKAGKSFAYAWVLDETGEERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDATREHGLLVRSLGVTQLAVAVNKMDNWQQERFQEIFIPTSGLSGENLKWYLCLLEQIDPQRSIDKPFRLCVSDVGKIEAGYIQGDRLLAMPPNETCTVKGILHAAAGDHVSLTITKGFPVLLHYQTVSEPAVIKRLISVLNKFLTKGQNALVELQPIALELYKDFKELGRFMLR Leishmania_major STTLGHLLLLLGRVSIQDVERNKADRTHHKSFKYAWLLDQCEEERRRGVTIDSGSFCFETEHRRVHILDAPGHKDFVLNMISSATQADAALLVVTATKSHLLVLKTLGVGSIVVAVNKMDAYSQERYDYVFCPISGMTGVNIPWYLSLIEMIDESRLVNSPLRLSLQDVAKVESGRLFGDMVHFVPSEVRVTIKSIKPAFAGETVEISILPGASFTIIVHALTVRVHVAALISKMDKCVPPAAQAMMLFRPVALEPATECRALGRFVLQ Mus_musculus STLMGHMLYLLGNVNKRTMHKYQESKKAGKSFAYAWVLDETGEERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDATREHGLLVRSLGVTQLAVAVNKMDNWQQERFQEIFIPTSGLSGENLTWYMCLLEQIDPQRSIDKPFRLCVSDVGKIEAGYIQGDRLLAMPPNETCTAKGILHAAAGDHVNLTITKGFPVLLHYQTVSEPAVIKRLISVLNKLLTKGQNALVELQPVALELYKDFKELGRFMLR Oryza_sativa STLSGRLLHLLGRISKKDMHKNKEAKEKGKSFAYAWAMDESSEERERGVTMTVAVAYLETNKYRVVLLDSPGHKDFVPNMISGATQADAAILVVDATKEHAQLIRSFGVEQLIVAVNKMDGYSKERFEFIWIPLSAVENQNLSWYFCLLDAIDPSRDVSKPLILPICDVGKLETGAIRGSKVLISPCGEVATVKSIRDARAGDNVAVSILIGYQVEFHIHHVKEAARVTKIVALLDRFLKSKQNAVVQVTPVCVEEFSKCRALGRAFLR Saccharomyces_cerevisiae STLMGRLLYDLNIVNQSQLRKLRESETMGKSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCTKEHMLLASSLGIHNLIIAMNKMDDWSQQRFEEIWVPISGFSGEGVQWYPNLMSTLEEGINKDDPFLFSVLEIGKLESGSIQGESLTIYPSEQSCIVDKIVGAIKGDFVTLKLLPGTPFILFIGVKEQPARIKRLISFIDRHLGSKQRAFVEIEWIPLLTAHENDRLGRVVLR Schizosaccharomyces_pombe STMLGRIMFELGEINSRSMQKLNEAANSGKSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSTREHAYLLRALGISEIVVSVNKLDSWSEDRFQEIFVPISAISGTNLKWYPTLLSALDPEKPYRKPLRLSIDDVGRVEAGNVQNQVLYDVSSQEDAYVKNVRNAVAGDTVTLQILSGSTLVLHLGRTVT-SVSLKIVTVNNRHIASRKRALVRISLFPLCLAEECPALGRFILR Trypanosoma_brucei STTIGHLLLMLGKVTQSEVDRNKNARQMKKSFKFAWLLDQSEEERRRGVTIDAGSYCFETEHRRIHVLDAPGHKDYVLNMMSSAAQADAALLVVTATKEHLVILKMLGVGHIVVAVNKMDGYSQERYDFVFCPVSGIQGTNIPWYPSLVVRLDESRMMGTLLRLSVQDVCKVECGNVQGEKLLFVPADVKVQVRSIKPAFAGDTIVIDILPGARFTMVCHALTVQLQVLVLVSKMDKCIPKSTQAIIVFRKVALEPAEVCRSLGRFVLQ ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M598] TITLE 'Bacterial HMG-CoA'; LINK TAXA = Taxa8; DIMENSIONS NCHAR=251; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . ] Archeoglobus_fulgidis ENVIGTFELPLGIATNFLIDGKDYLIPMAIEEPSVVAAASNAARMAFTTDYTGSLMIGQIQVAKFEVDEIIERANECDPMCKDIEARVIVHLIVDVKDAMGANAVNTMCEKVAPFIGKVYLRIISNRLARAKAVFDKDVIEVVEGIMLAYAFDPFRCATKIMNGISALMIATGNDFRAIAGLTTYELVGTIEIPMAVGVIGGAKNPLAKISLKILGVAEEVAAALGLAQNFAALRALATEGIQRGHMELHA Archeoglobus_profundus ENVIGTFELPIGIATNFLIDGKDYLVPMVIEEPSVVAAASHGAKIAFSTLYTGSIMIGQIQVAKFEVDEIIEKANEIESSCKDLTVRVVVHLLIDVKDAMGANFINSVCERIAPFIGKVLLRILSNRLAIAKAVFDKKAVEVVEGIIKAYELDIYRCATKIMNGVCAVLIATGNDFRAVSALTHYELVGYIELPMSVGVVGGAKNPLARICLKILGVAEEVIASVGLAQNFAALRALVTEGIQRGHMELHA Archeoglobus_veneficus ENVIGTFELPLGIATNFLIDGKDYLIPMAIEEPSVVAAASNAAKMAFVTQATPPVMIGQIQVAKIEVDEIIQKANEQDSICKDIEARVIVHLLVDVRDAMGANAVNTMAEAVAPIIGKVRLRIISNRLARAKAVFDKDAIEVVDGIIEAYAFDPYRCATKIMNGVSAVVIATGNDFRAVAGLTTYELVGTIELPVAVGIVGGASNPMARVCLKILGVAEEVIAAVGLAQNFAALRALATEGIQRGHMELHA Enterococcus_faecalis ENQISETEVPMGVGLHLTVDETDYLVPMATEEPSVIAALSNGAKIAFKTVNQQRLMRGQIVFLIDELTEIFQQAELSYPSLRDLQYRASVDFLVDVKDAMGANIVNAMLEGVAELFQKILFSILSNSVVTMKTAIPVSRLEIAEKIVLASRYDPYRAVTKIMNGIEAVVLATGNDTRAVASLTSWTLIGEISVPLALATVGGAKLPKSQAAADLLAVAKEVVAAVGLAQNLAALRALVSEGIQKGHMALQA Enterococcus_faecium ENQVSEVEIPMGIAQNFQINGKKKWIPMATEEPSVIAAASNGAKICICAETPQRLMRGQIVLVINAVEELILCANESYPSVQDISTRESIDFLVDVKDAMGANMINSILESVANKLEEILFSILSNSLASACCEIPFERLQIAKKIQQAGEYDPYRAATKIMNGIEAVVAATGNDTRAVASLTDWQLVGKLTVPLAVATVGGANLPKAKASLAMLDIAKEVIAAVGLAQNLAALRALVTEGIQKGHMGLQA Ferroglobus_placidus ENVIGTFELPLGIATNFLIDGKEYLIPMAIEEPSVVAAASNAAKMAFFTDYSGNIMIGQIQVAKFEVEEIIEKANEQDPICKDVEARVIVHLLVDVKDAMGANAVNTMAEAVAPLIGKVYLRIISNRLARAKAIFDKNVIEVVEGIMQAYAFDPFRCATKIMNGISAVVIATGNDFRAVAGLTRYELVGTIELPMAVGVIGGAKNPLAKICLKILGVAEEVLAAVGLAQNFAALRALATEGIQRGHMELHA Pseudomonas_mevalonii ENVIGTFELPYAVASNFQINGRDVLVPLVVEEPSIVAAASYMAKLAFTTSSSAPLMHAQVQIARLSLDEIIELANRKDQLCRDIEVHTVAHLIVDVRDAMGANTVNTMAEAVAPLMGQVRLRILSNRLARAQVRITPQQLAVIEGILDAYAFDPYRAATKIMNGIDPLIVATGNDWRAVAGLTTWELVGTLEMPMPVGLVGGAKHPLAQLSLRILGVAQAIAVAVGLAQNLGAMRALATEGIQRGHMALHA Staphylococcus_aureus ENVIAQGALPVGLLPNIIVDDKAYVVPMMVEEPSVVAAASYGAKLVFKTVSSERIMIGQIVFLSADIKQIHKIADEAYPSYQRIAIDTSLKVFVDTKDAMGANMLNTILEAITAFLSDILMSILSNSVVKVQGEIDVKDLEVAKRMERASVLDIHRAATKVMNGIHAVVLATGNDTRGAASIATWRLIGTIEVPMTLAIVGGGKLPIAKASLELLNVAQEVVAAVGLAQNFAACRALVSEGIQQGHMSLQY Staphylococcus_epidermidis ENVIGQGALPVGLLPRIIVDDKEYVVPMMVEEPSVVAAASYGAKLVFKTISSERLMIGQIVFLANSISQIHQIADEAYPSYQRIEIDTSLKVFVDTKDAMGANMLITILEAITAHLQNVLMSILSNSVVQVQGEIDIEDLEVAQRMERASVLDIHRAATKVMNGIHAVVLATGNDTRGVASIATWELVGTIEVPMTLATVGGGKLPIAKASLNLLNVAQEVVAAVGLAQNFSACRALVSEGIQQGHMSLQY Staphylococcus_haemolyticus ENVIGQGTLPVGLLPKIIVDDKEYVVPMMVEEPSVVAAASYGAKLVFKTVKSERLMIGQIVFLAQAIPQIKQIAAEAYPSYRRIEIDTSLKVFVDTKDAMGANMLNTILEAITAHMRDVLMSILSNSVVRVQGEIDIKDLEVAQRMERASVLDIHRAATKVMNGIHAVVLATGNDTRGAASIATWKLVGTIEVPMTLAIVGGGKLPIAKASLELLNVAQEVVAAVGLAQNFSACRALVSEGIQKGHMSLQY Streptococcus_pneumoniae ENVVGTFSLPYSLVPEVLVNGQGYTVPYVTEEPSVVAAASYASKIIFTAQVHQRQMIGQVALAQEKIAELLELANQAYPSARDLHVEQVVYIHVDTQEAMGANMLNTMLEALKPVLGQSLMGILSNSLVTASCRIAFRYLEIAEKIALASQFDPYRAATKIFNGIDAILIATGNDWRAIAGLSCWTLVGEMTLPMPVATKGGSGNPRVALSHDLLGNAREIIVSIGLAQNFAALKALVSTGIQQGHMKLQA Streptococcus_pyogenes ENVLGRLALPFSIAPDFLVNGSTYQMPFVTEEPSVVAAASFAAKLIFKAQTLNRQMIGQIVLAKAAIKKLIALANKAYPSARTIHLEEIFYLTVDTQEAMGANMVNTMMEALVPDLGHCLMAILSNSLVTTSCEIPVRLLQLAQKIELASRLDPYRATTKIFNGIDAVVIATGNDWRAIAGLSQWHLLGQMTLPMPIASKGGSGNPTVSIAHDLLNQAKTLIASVGLAQNFAALKALTSSGIQAGHMKLHA Thermoplasma_acidophilum ENVITTIEMPMGIAVNFRINDRDYLIPMAIEEPSVVAAASNAAKVAFRAFATEPIMIGEIQVAKIALQKILDMANTRSKTARDLEVEIIVHLIVDVRDAMGANVINSMCEYVAPEIGRVNLRILSNRIAYASAVFPKEIIEAVDSIIEAYHMDIYRAATKIMNGVDAVLIATMNDWRSAANLARYELVGSIEIPMAVGTIGGTRIEKARIAMKILGVAKEVLAAVGLAQNFAALRALATEGIQRGHMELHS Thermoplasma_volcanium ENVITTIEMPLGIAVNFLINGKDYLIPMAIEEPSVVAAASNAAKVAFNAYATEPVMIGEIQVAKMNISRILELANTRSKTAKDIEVNVIVHLIVDVRDAMGANVVNSMCEYVAPEIGRVNLRILSNRVAYASAVFSKDIIEAVDNIVEAYRMDIYRASTKIMNGIDAVLVATMNDWRAAANLAKYELVGTIEIPIAVGTVGGTGIDKARIARKILGVATEVLAAVGLAQNFSAVRALATEGIQRGHMELHA ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M596] TITLE 'Archaebacterial HMG-CoA'; LINK TAXA = Taxa2; DIMENSIONS NCHAR=251; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . ] Aeropyrum_pernix ENPIGAVQVPVGVAGPLRINGDDFYIPLATTEGALVASVNRGAKAIARAKVIKDGMTRAPLLLAMWVEDLRSVVAGVTRHLQHIYPYIWLRLSFSTGDAMGMNMVTISSDRICRYIAKCIALSGNMYVVAEAVIKGEVVKTTPQNINLVNVTSAAAGSHFFANIIAAIFIATGQDAAQVVEYTWTELYISVTLPLEVGTVGGGRLPTQRELLALLGVALKIIASAVLAGELNLLSAIAAGQLARAHELLGR Halobacterium_species ENLTGGAQLPLGVAGPVALSGGEYYLPMATTEGALVASVNRGCSAIANARVTKTGMTRAPVFVAQWADALAAAAESTTSHLTDVTPYVYLRFRYDTKDAMGMNMATIATEAASELVAELVAVSGNLTVTADVTIPQDVVETTPAAIEEANTRSAKAGSLFAANVVAAVFLATGQDAAQVVEITTVELYASVNLALEVGTVGGGTLPTQREALDVLGVADAIIAVGALAGEINLLAALASRRLSAAHADLGR Haloferax_volcanii ENMVGSIQVPMGVAGPVSVDGGEKYLPLATTEGALLASVNRGCSVIATARVLKSGMTRAPVFLVSWTAALKEAAEETTNHLLDVTPYVYLRFRYDTKDAMGMNMATIATEAVCGVVASLVALSGNLSVTADVRIPREVVETTPERGRELNTRSAKAASLFVANVVAAMFLATGQDEAQVVEITTAELYVSVSIALEVGTVGGGKLPTQSEGLDILGVADACIAVGSLAGELSLLSALASRHLSSAHAELGR Methanobacterium_thermoautotrophicum ENPIGVVQIPLGVAGPLRVRGEEYYVPLATSEGALVASVNRGCSVIATVRVTGDSMTRAPVILREWIDALREEAESTTRHLVKIDPIVYPRFVYTTGDSMGMNMVTIATERALELLAHVIALSGNLSITAEITVPGEMVETTPEAVVEVNTASAAAGSMFYANIIGAIFLATGQDEAHIVEVTIAELYFAVNLPVPLATVGGGGLETASECLDIMGVVHAIVGGAVLAGELSLMGALAAGHLARAHSELGR Methanococcus_jannaschii ENMIGAIQIPLGFAGPLKINGEEFYIPLATTEGALVASVNRGCSIIATVRVIDDKMTRAPCLVRDWIERIKEVAESTTRHLIKIEPLIYPRFVFKTGDAMGMNMVTIATEKACNFIVKTVAVSGNASIVAEVFLTEKEVNTTSQAIAEVNRLSAISNSMFYANIIGAIFLATGQDEAHIVEITMAELYFSVTLPVPIGTVGGGRVETQKECLEMLGCALKIVGAAVLAGELSLLGALAAGHLGKAHQELGR Methanosarcina_mazei ENMIGAVQIPLGVAGLLKVNGEEYYIPLATTEGALVASVNRGCSVIANVRVFEDEMTRAPVFFYDWVEQMKQAAEKTTRFLLSVKPFVYLRFSYDTKDAMGMNMVTIATDAVMHLIAHPVTLSGNMTVVAEVTIPQEIVKCTPESMFEVNYSSARAGAMFAANIIAAVYLACGQDAAHVVEITSMEIHCSVTLPLPVGTVGGGGLGTQRDCLNILGVSRKIVASAVLAGEISLIGAQAAGHLARAHAQLGR Pyrobaculum_aerophilum ENVIGAVQIPVGVAGPLLVRGDYFYVPLATTEGALVASVNRGAKFVARVKVLKDGMARAPLFLVEWVEELKKVAESTTRFLKDIQHFIWLRLVFSTGDAMGMNMVTIASEAVAKFIAKLIALSGNMTVVAEAVIKKEILEITPEDVHNVNVRSALAHSYFFANIIAAIFIATGQDVAQVVEITSTELYISVFLPLEVGTVGGGGLPTQREALELLGVALKIIAAAVLAGELNLLIALARNELASAHKKLGR Pyrococcus_abyssii ENMIGVVQIPMGVAGPLKINGEEFYIPLATTEGALVASVNRGCSALVVTTILDDKMTRAPLIVAEWVNYLQEAVAKVTRHLRDVKPFIYLRFEFETGDAMGMNMVTIASEEIMKVIVRYLALSGNLTVVAEAIVPREIVETTPELIAEVNYFSAQAGSYFFGNIVGAIFLATGQDEAQITEITIAELYISITMPLEIGTVGGGRVPTQREALSIMGVAKKIVAGAVLAGELSLLAAIAAKHLARAHKMLGR Pyrococcus_furiosus ENMIGVVQIPMGIAGPLKINGEEFYIPLATTEGALVASVNRGCSALVYTTLIDDKMTRAPLLVAEWVDYLQEAVSKVTRHLRGVKPFIYLRFEFETGDAMGMNMVTIASEEIMKVIVKYLALSGNLTIIAEAVVPREIVKTTPELIAEVNYLSAQAGSYFFANIVGAIFLATGQDEAQITEITLAELYISITMPLEIGTVGGGRVPPQREALEIMGVAKKIVAGAVLAGELSLLAAIAAKHLARAHKMLGR Pyrococcus_horikoshii ENMIGVVQIPMGVAGPLKINGEEFYIPLATTEGALVASVNRGCSALVVTTLIDDKMTRAPLIVAKWVDYLQEAVSKVTRHLRGVKPFIYLRFEFETGDAMGMNMVTIASEEIMKVIVRYLALSGNLTVIAEAVVPRKIVETTPELIAEVNYFSAQAGSYFFANIVGAIFLATGQDEAQITEITIAELYISITMPLEIGTVGGGRVPSQREALEIMGVAKKIVAGAVLAGELSLLAAIAAKHLARAHKMLGR Sulfolobus_solfataricus ENVIGAIQIPLGIVGPIRVNGDDFYVPMATTEGALIASVNRGIKAVVRAKVLKDEMTRAPVFFLKFIEKIRNIANSTSHHLKSITPFVWLRFSFETGDAMGMNMVTIAVEKVCEFIADCLAVSGNMTVVAEALIKKDVIRSNAQLIHDINLRTARAGSLFFANIVTAIFIATGQDVAQIVEYTWTELYISVTLPLEVGTVGGGRLPTQKEALSIMGVAKKIIASTVLSGELNLLAALSNKELGKAHAKLGR ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M605] TITLE Eukaryotic_hsp90; LINK TAXA = Taxa6; DIMENSIONS NCHAR=547; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Ajellomyces_capsulatus ALSDPSKLESDKDLRIDITPDKENKTLTIRDTGIGMTKADLVNNLGTIARSGTKQFMEALTSMIGQFGVGFYSAYLVADKVTVISKSNDDQYIWESNAGGTFKVTDGRAIGRMILHLDEQTEYLNESKIKEVVKKQSEFIFYPIYLHVLKEEKEVPDAKKTKKIKENKIEEEELNKTKPIWTRNPADITQEEYASFYKTNDWEDHLAVKHFSVEGQLEFRAILFVPKRAPFDLFETKTKNNIKLYVRRVFITDDATDLIPEWLSFIKGVVDSEDLPLGLSRETLQQNKIMKVIKNIVKKTLELFNEIAEDREQFKFYSAFSKNIKLGVHEDAQNRPALAKLLRYNSTTTSLTDYVTRMPEHHKTIYYITGESLKAVQKSPFLDTLKEKNFEVLFLVDPNDEYAMTQLKEFDGKKLVDITKDFELEETEEEKKDREAEEKEYEGLAKSLENILGDKVEKVVVSHKLIGSPCAIRTGQFGWSANMERIMKAQALRDTSMSSRRSSRPTENRTVKSITQLLFETSLLSGFTIEEPSFAGRIHKLVSLGLN Anopheles_albimanus SLTDPTKLDSGKELFIKIIPNKEAGTLTLIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQSMIGQFGVGFYSAYLVADKVVVTSKNNDDQYVWESSAGGSFTVRDGEPLGRIVLHIEDQLEYLEESKIKQIVNKHSQFIGYPIKLLVEKEEKEVSDDKKKKTVKVKYTEDEELNKTKPIWTRNADDISQEEYGEFYKTNDWEDHLAVKHFSVEGQLDFRALLFVPRRMPFDLFENKKKNNIKLYVRRVFIMDNCEELIPDYLNFMKGVVDSEDLPLNISREMLQQNKILKVIKNLVKKCMELFEELAEDKETYKFYDQFSKNLKLGVHEDSQNRQKLADLLRFNTSYCSLNDYVGRMKENQTQIYFITGESIEQVKNSAFVERVKKRGFEVIYMTEAIDEYVIQQLKEYKGKQLVCVTKELELPEDEAEKKKREEDKAKFENLCKVMKSVLESKVEKVVVSNRLVDSPCCIVTSQYGWSANMERIMKAQALRDSSAMGYMAGKAETNKAVKDLVILLFETALLSGFSLDEPGHAARIYRMVKLGLG Arabidopsis_thaliana_1 SLTDKSKLDGQPELFIHIIPDKTNNTLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEALASMIGQFGVGFYSAYLVADKVVVTTKHNDDQYVWESQAGGSFTVTDGEALGRMILYLEDQMEYIEERRLKDLVKKHSEFISYPISLWIEKTEKEISDEKKKKKIKEVTHEWDLVNKQKPIWMRKPEEINKEEYAAFYKSNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTKKPNNIKLYVRRVFIMDNCEDIIPDYLGFVKGIVDSEDLPLNISRETLQQNKILKVIKNLVKKCLELFFEIAENKEDYKFYEAFSKNLKLGIHEDSQNRTKIAELLRYHSTLTSLKDYVTRMKEGQNEIFYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAIGQLKEFEGKKLVSATKELKLEETDDEKKKKEELKEKFEGLCKVIKDVLGDKVEKVIVSDRVVDSPCCLVTGEYGWTANMERIMKAQALKDSNTGGYMSSKSDENKSVKDLVLLLFETALLSGFSLDEPNFGSRIHRMLKLGLS Arabidopsis_thaliana_2 SLTDKSKLDGQPELFIHIIPDKTNNTLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEALASMIGQFGVGFYSAYLVADKVVVTTKHNDDQYVWESQAGGSFTVTDGETLGRMVLYLEDQLEYLEERRLKDLVKKHSEFISYPISLWIEKTEKEISDEKKKKKIKEVSHEWDLVNKQKPIWMRKPEEINKEEYAAFYKSNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTKKPNNIKLYVRRVFIMDNCEDIIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIKNLVKKCLELFFEIAENKEDYKFYEAFSKNLKLGIHEDSQNRTKIAELLRYHSTLTSLKDYVTRMKEGQNDIFYITGESKKAVENSPFLEKLKKKGIEVLYMVDAIDEYAIGQLKEFEGKKLVSATKELKLDETEDEKKKKEELKEKFEGLCKVIKDVLGDKVEKVIVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKSDENKSVKDLVLLLFETALLSGFSLDEPNFGSRIHRMLKLGLS Arabidopsis_thaliana_3 SLTDKSKLDGQPELFIHIIPDKTNNTLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEALASMIGQFGVGFYSAYLVADKVVVTTKHNDDQYVWESQAGGSFTVTDGEALGRMVLYLEDQMEYIEERRLKDLVKKHSEFISMGISLWIEKTEKEISDEKKKKKIKEVSHEWDLVNKQKPIWMRKPEEINKEEYAAFYKSNDWDKDLAVKHFSVEGQLEFKAILFVPKRRPFDLLYTKKPNNISLYVRRVFIMTYCEDIIPEYLGFVKGIVDSEDLPLNISRETLQQNKISMVIKNLVKKCLELFFEIAENKEDYKFYEAFSKNLKPGIHEDSKIRTKIAELLRYHSTLTSLKDYVTRMKEGQNDIFYITGESKKAVENSPFLEKLKKKGIEVLYMVDAIDEYAIGQLKEFEGKKLVSATKELKLDETEDEKKKKEELNEKFEGLCKVIKDVLGDKVEKVIVSDRVLDSPCCLVTGEYGWTANMERIMKAQALRDSSMGGYMSSKLDENKSVKDLVLLLFETALLSGFSLDEPNFGSRIHRMLKLGLS Babesia_bovis AIKDPKQVEDFPEYQISLSADKTNKTLTIEDTGIGMTKTDLINNLGTIAKSGTKAFMEAIQSMIGQFGVGFYSAYLVADKVTVVSKNNNDQYVWESNASGHFTVTDEDQLKRLILHLDDQSEYLEERRLKELVKKHSEFISFPIRLSVEKTETEVTDEKKKRKVTNVTREWEMLNKQKPIWMRLPTEVTNEEYASFYKSNDWEDHLAVKHFSVEGQLEFKAILFVPKRAPFDMFENRKKNNIKLYVRRVFIMDDCDELIPEWLGFVKGVVDSEDLPLNISREVLQQNKILKVIKNLVKKCLELFSELTEKKEDFKFYEQFSKNLKLGIHEDNTNRNKISELLRYETSAISLKEYVDRMKPEQKYIYYITGESKQSVANSPFLECLRSRGIEVIYMTDPIDEYAVQQIKEFEGKKLKCCTKELELEDTEEERKNFETLEKEMEPLCRLIKEILHDKVEKVVCGKRFTESPCALVTSEFGWSANMERIMKAQALRDSSFGSFMISKSKESKTLKDLVWLLYDTAMLSGFNLDDPTFGGRIYRMIKLGLS Brugia_pahangi ALTEPAELETGKELYIKITPNKADKTLTIMDTGIGMTKADLVNNLGTIAKSGTKAFMEALQSMIGQFGVGFYSAFLVADKVVVASKHNDDCYQWESSAGGSFIIRVDPELTRITLYIEDQTDYLEERRIKEIVKKHSQFIGYPIKLTVEKEDKEVSDDKKKKKIKEKYHEDEELNKTKPIWTRNPDDISNEEYAEFYKSNDWEDHLAVKHFSVEGQLEFRALLFVPQRAPFDLFENKTKNAIKLYVRRVFIMENCDELMPEYLNFIKGVVDSEDLPLNISREMLQQSKILKVIKNLVKKCLELFDEIAEDKDNFKFYEQFSKNIKLGIHEDSTNRKKLSEFLRFYTSMTSLKDYVSRMKENQKQIYFITGESREAVASSAFVERVKRRGFEVIYMTDPIDEYCVQQLKEYDGKKLVSVTKELELPESEEEKKKFEEDKVKFENLCKVMKDILEKKVEKVAVSNRLVSSPCCIVTSEYGWSANMERIMKAQALRDSSTMGYMAAKSKANKTVKDLVVLLFETALLSGFSLEDPQHASRIYRMIKLGLD Caenorhabditis_elegans ALTEPSELDTGKELFIKITPNKEEKTLTIMDTGIGMTKADLVNNLGTIAKSGTKAFMEALQSMIGQFGVGFYSAFLVADKVVVTSKNNDDSYQWESSAGGSFVVRFDPEVTRIVMHIEDQIDFLEERKIKEIVKKHSQFIGYPIKLVVEKEEKEVEDKKKTKKIKEKYFEDEELNKTKPIWTRNPDDISNEEYAEFYKSNDWEDHLAVKHFSVEGQLEFRALLFVPQRAPFDLFENKSKNSIKLYVRRVFIMENCEELMPEYLNFIKGVVDSEDLPLNISREMLQQSKILKVIKNLVKKCMELIDEVAEDKDNFKFYEQFGKNLKLGIHEDSTNRKKLSDFLRYSTSPTSLKEYVSRMKENQTQIYYITGESKDVVAASAFVERVKSRGFEVLYMCDPIDEYCVQQLKEYDGKKLVSVTKELELPETEEEKKKFEEDKVAYENLCKVIKDILEKKVEKVGVSNRLVSSPCCIVTSEYGWSANMERIMKAQALRDSSTMGYMAAKAKTNKTVKDLVVLLFETALLSGFSLEEPQHASRIYRMIKLGLD Candida_albicans ALSDPSQLESEPELFIRIIPQKDQKVLEIRDSGIGMTKADLVNNLGTIAKSGTKSFMEALSSMIGQFGVGFYSLFLVADHVQVISKHNDDQYVWESNAGGKFTVTDNERLGRLRLFLEDQLEYLEEKRIKEVVKKHSEFVAYPIQLVVTKEEKEVPEEKKTKTVKEEVTETEELNKTKPLWTRNPSDITQDEYNAFYKSNDWEDPLAVKHFSVEGQLEFRAILFVPKRAPFDAFESKKKNNIKLYVRRVFITDDAEELIPEWLSFIKGVVDSEDLPLNLSREMLQQNKILKVIKNIVKKMIETFNEISEDQEQFQFYTAFSKNIKLGIHEDAQNRQSLAKLLRFYSTMTSLSDYVTRMPEHQKNIYYITGESIKAVEKSPFLDALKAKNFEVLFMVDPIDEYAMTQLKEFEDKKLVDITKDFELEESDEEKAAREKEIKEYEPLTKALKDILGDQVEKVVVSYKLVDAPAAIRTGQFGWSANMERIMKAQALRDTTMSSYMSSKPKEEKTVKDLTTLLFDTALLSGFTLDEPSFAHRINRLIALGLN Candida_tropicalis ALSDPSQLESEPELFIRITPHKDQKVLEIRDSGIGMTKADLVNNLGTIAKSGTKSFMEALSSMIGQFGVGFYSLFLVADHVQVVSKHNDDQYIWESNAGGKFTVTDNERLGRLRLFLEDQLEYLEEKRIIEVVKKHSEFVAYPIQLVVTKEEKEVPEEKKTKKIKEEVTETEELNKTKPLWTRNPSDITQEEYNAFYKSNDWEDPLAVKHFSVEGQLEFRAILFVPKRAPFDAFESKKKSNSKLYVRRVFITDDAEELIPEWLSFVKGVVDSEDLPLNLSREMLQQNKILKVIKNISKKMIETFNEISEDQEQFQFYTAFSKNIKLGIHEDAQNRQALAKLLRFYSTMTSLSDYVTRMPEHQKNIYYITGESIKAVEKSPFLDALKAKNFEVLFMVDPIDEYAMTQLKEFEDKKLVDITKDFDLEETEEEKSTREKEIKEFEPLTKALKDILGDQVEKVVVSYKLVDAPAAIRTGQFGWSANMERIMKAQALRDTTMSSYTSSKPKEEKTVKDLTTLLFDTALLSGFTLDEPSFAHRINRLIALGLN Cricetulus_griseus SLTDPSKLDSGKELHINIIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQSMIGQFGVGFYTAYLVAEKVTVITKHNDDQYAWESSAGGSFTVRDGEPMGRVILHLEDQTEYMEERRIKEIVKKHSQFIGYPITLFVEKEDKEVSDKKKKKKIKEKYIDQEELNKTKPIWTRNPDDITNEEYGEFYKTNDWEEHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKNNIKLYVRRVFIMDNCEELFPEYLNFIRGVVDSEDLPLNISREILQQSKILKVIKNLVRKCLELFHELAEDKENYKFYEQFSKNIKLGIHEDSQNRKKLSELLRYYTSMVSLKDYCTRMKENQKHIYFITGETKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKELELPEDEEEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIIKAQALRDNSTMGYMAAKSETNKSVKDLVILLYETALLSGFSLEDPQHANRIYRMIKLGLG Danio_rerio SLTDPTKLDSGKDLKIDIIPNVQERTLTLIDTGIGMTKADLINNLGTIAKSGTKAFMEALQSMIGQFGVGFYSAYLVAEKVTVITKHNDDQYAWESSAGGSFTVKDGEPIGRVILHLEDQTEYIEEKRVKEVVKKHSQFIGYPITLYVEKEDKEISDKKKKKKIKEKYIDQEELNKTKPIWTRNPDDISNEEYGEFYKTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKNNIKLYVRRVFIMDNCEELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIKNIVKKCLELFAELAEDKDNYKFYDAFSKNLKLGIHEDCQNRKKLSELLRYQSSMTSLTEYVSRMKENQKSIYYITGESKDQVAHSAFVERVCKRGFEVLYMTEPIDEYCVQQLKDFDGKSLVSVTKELELPEDEDEKKKMEEDKAKFENLCKLMKEILDKKVEKVTVSNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMMANPETNKAVKDLVILLFETALLSGFSLDDPQHSNRIYRMIKLGLG Dictyostelium_discoideum SLTDASVLESKTELEIKIIPDKTAKTLTLIDSGIGMTKTDMVKNLGTIARSGTKNFMEQLQSMIGQFGVGFYSAYLVADTVIVHSKNNDDQYVWESSAGGEFTIADTEPLGRIVLHMEDQLDYLDETKIKNLVKKHSEFIQYPISLLTIKEDEETTAEKEKKKVKVQEKEWDVLNKTKPLWTRNPSDVTKEEYNSFYKSNDWEEPLAVKHFSVEGQLEFKAILFVPKKAPFDLFESKKANNIKLYVKRVFIMDNCADIIPEYLNFVRGIVDSEDLPLNISRETLQQNKILTVIKNLVKKCIELFNEIAENSEDYKFYEAFSKNLKLGVHEDSQNREKFADLLRYQTSLVTLKEYVGRMKEGQNEIYYITGESKKAVENSPFIEGLKKKNLEVIYMCDPIDEYAVQQLKEYDGKKLVSITKELKLDETEDEKKKAEQDKAANEELLKQVKDVLGDKVEKVVLSTRLANSPCVLVTSEYGWSANMERIMKAQALRDSSMSSYMSSKPRDSKTFKDFVYLLYETALLSGFSLDEPSFASRIHRMIKLGLS Drosophila_melanogaster SLTDPSKLDSGKELYIKLIPNKTAGTLTIIDTGIGMTKSDLVNNLGTIAKSGTKAFMEALQSMIGQFGVGFYSAYLVADKVTVTSKNNDDQYVWESSAGGSFTVRDSEPLGRIVLYIEDQTDYLEESKIKEIVNKHSQFIGYPIKLLVEKEEKEVSDAKKKKTIKEKYTEDEELNKTKPIWTRNPDDISQEEYGEFYKTNDWEDHLAVKHFSVEGQLEFRALLFIPRRTPFDLFENQKRNNIKLYVRRVFIMDNCEDLIPEYLNFMKGVVDSEDLPLNISREMLQQNKVLKVIKNLVKKTMELIEELTEDKENYKFYDQFSKNLKLGVHEDSNNRAKLADFLRFHTSFCSLADYVSRMKDNQKHVYFITGESKDQVSNSAFVERVKARGFEVVYMTEPIDEYVIQHLKEYKGKQLVSVTKELELPEDESEKKKREEDKAKFESLCKLMKSILDNKVEKVVVSNRLVDSPCCIVTSQFGWSANMERIMKAQALRDTATMGYMAGKPETNKAVKDLVILLFETSLLSGFSLDSPQHASRIYRMIKLGLG Eimeria_tennela AITEPEKLKTKPELFIRLIPDKANNTLTIENSGIGMTKADLVNNLGTIARSGTKAFMEALQSMIGQFGVGFYSAYLVADSVTVVSKHNDDQYVWESAAGGSFTVQDYEPLGRIILHLEDQGEYLEERRLKDLVKKHSEFISFPIELAVEKTEREVTETGKTKKVQEVTREWEQLNKQKPLWMRKPEEVTEEEYASFYKSNDWEEHLAVKHFSVEGQLEFKALLFVPKRAPFDLFETRKRNNIKLYVRRVFIMDDCEDIIPEWLNFVKGVVDSEDLPLNISRESLQQNKILKVIKNLVKKCLEMFAEIEEKKENYKFYEQFSKNLKLGIHEDSANRAKIAELLRFHSSMVSFKEYVDRMKEGQKDIYYITGESRQTVANSPFLEKLTKKGYEVLYMTDPIDEYAVQQLKEFDNHKLRCCTKELEIDESEEEKKKFEELKAEFEPLLKLIKEVLHDKVDKVVLSNRITDSPCVLVTTEFGWSANMERIMKAQALRDNSMTSYMVSKSIESKTVKDLIWLLYDTALLSGFSLEEPTFAARIHRMIKLGLS Guillardia_theta SLTDSSVLDNEPKLEIRILTDKNNKSLTLIDTGIGMTKDDLIQNLGTIAKSGTKSFMEALQSMIGQFGVGFYSAYLVADRVVVETKNNNDQYIWESSAGGSFTINDITDLARITLFLDDQLEYLEERRLKDLVKKHSEFIQYPINLWVEKEEKEVDAEKKKKKIKEISHEWQFLNKNKPIWTRKPEEISKEEYSSFYKSNDWEDHLAVKHFSVEGQLEFKALLFVPKRAPFDLFEPRKNNNIKLYVKRVFIMDNCDEIIPEYLNFIKGVVDSEDLPLNISRETLQQNKVVKVIKNIVKKCLELFLEISENKDDVIFYDQYSKNIKLGIHEDSQNRSKLADLLRYKSTTTTLKEYVSRMKENQNQIYYITGESQKSVENSPFLEKLKQKGFEVLFMIEPIDEYCVQQLKEYEGKKLVCATKELDLGDSENDKKVKENEKEQFDELCKVIKETLNDKVEKVVISDRLSDSPCILVTGEYGWSANMERIMKAQALRDSSLSTYMSSRSNENKTVKDLVNLLFDTSLLSGFSLDEPHFAERIHRMIKLGLS Homo_sapiens_1 SLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQSMIGQFGVGFYSAYLVAEKVVVITKHNDDQYAWESSAGGSFTVRDGEPIGRVILHLEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKEEKEISDKKKTKKIKEKYIDQEELNKTKPIWTRNPDDITQEEYGEFYKTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIKNIVKKCLELFSELAEDKENYKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKELELPEDEEEKKKMEESKAKFENLCKLMKEILDKKVEKVTISNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMMAKPETNKAVKDLVVLLFETALLSGFSLEDPQHSNRIYRMIKLGLG Homo_sapiens_2 SLTDPSKLDSGKELHINLIPSKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQSMIGQFGVGFYSAYLVAEKVTVITKHNDDQYAWESSAGGSFTVRDGEPMGRVILHLEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKEDKEVSDKKKKKKIKEKYIDQEELNKTKPIWTRNPDDITNEEYGEFYKTNDWEEHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKNNIKLYVRRVFIMDNCEELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIKNLVKKCLELFTELAEDKENYKFYEQFSKNIKLGIHEDSQNRKKLSELLRYYTSMVSLKDYCTRMKENQKHIYFITGETKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKELELPEDEEEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKSETNKSVKDLVILLYETALLSGFSLEDPQHANRIYRMIKLGLG Ipomoea_nil SLTDKSKLDAQPELFIRLVPDKTNKTLSIIDSGVGMAKADLVNNLGTIARSGTKEFMEALQSMIGQFGVGFYSAYLVAEKVIVTTKHNDDQYIWESQAGGSFTVTDGEQLGRITLFLEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTEKEISDGKKKKKIKEVSHEWQLINKQKPIWLRKPEEITKEEYASFYKTNDWEDHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKMNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISREMLQQNKILKVIKNLVKKCIEMFNEIAENKDDYKFYEAFSKNLKLGIHEDSQNRAKLADLLRYYSTLTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKELKLEDDDEEEKKKREEKKSFENLCKIIKDILGDKVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDSSMSSYMSSKGEENKSVKDLVLLLFETALLSGFSLDDPNFGARIHRMLKLGLS Leishmania_amazonensis SLTDPSVLGDATRLCVRVVPDKENKTLTVEDNGIGMTKADLVNNLGTIARSGTKAFMEALESMIGQFGVGFYSAYLVADRVTVTSKNNSDVYVWESSAGGTFTITAESDMKLITLHLEDQLEYLEARRLKELIKKHSEFIGYDIELMVEKTEKEVTDKKKTKKVKEVTKEYEVQNKHKPLWTRDPKDVTKEEYAAFYKSNDWEDPPATKHFSVEGQLEFRAIMFVPKRAPFDMLEPNKRNNIKLYVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIKNIVKKCLEMFEEVAENKEDYQFYEQFGKNIKLGIHEDTANRKKLMELLRFYSTMTTLKDYVTRMKAEQNSIYYITGDSKKKLESSPFIEQAKRRGFEVLFMTEPYDEYVMQQVKDFEDKKFACLTKEVHFEESEEEKRQREEEKATCEKLCKTMKEVLGDKVEKVTVSERLSTSPCILVTSEFGWSAHMEQMMRNQALRDSSMAQYMMSKPKENKAVKDLVFLLFDTSLLSGFQLEDPTYAERINRMIKLGLS Leishmania_infantum SLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTKADLVNNLGTIARSGTKAFMEALESMIGQFGVGFYSAYLVADRVTVTSKNNSDSYVWESSACGTFTITTESDMKRITLHLEDQMEYLEPRRLKELIKKHSEFIGYDIELMVEKTEKEVTDKKKTKKVKEVTKEYEVQNKHKPLWTRDPKDVTKEEYAAFYKSNDWEDPRATKHFSVEGQLEFRSIMFVPKRAPFDMFEPNKRNNIKLYVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIKNIVKKCLEMFDEVAENKEDYQFYEQFGKNIKLGIHQDTANRKKLMEFVRFYSSMTTLKDYVTRMKAGQKSIYYITGDSKKKLESSPFIEQAKRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEVHFEESEEEKQQREEEKAACEKLCKTMKEVLGDKVEKVIVSECLSTSPCILVTSEFGWSAHMEQIMRNQALRDSSMAQYMMSKPKENKAVKDLVFLLFDTSLLSGFQLEDPTYAERINRMIKLGLS Lycopersic_esculentum SLTDKSKLDGQPELFIHIIPDKANNTLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEALASMIGQFGVGFYSAYLVAEKVVVTTKHNDDQYVWESQAGGSFTVTDGENLGRMVLYLEDQLEYLEERRLKDLIKKHSEFISYPISLWVEKTEKEISDEKKKKKVKEVSNEWSLVNKQKPIWMRKPEEITKEEYAAFYKTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTKKPNNIKLYVRRVFIMDNCDELIPEYLSFVKGIVDSEDLPLNISRETLQQNKILKVIKNLVKKCVELFFEIAENKEDYKFYEAFSKNLKLGIHEDSQNRAKFAELLRYHSTMTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYSIGQLKEFEGKKLVSATKELKLDESEDEKKKQEELKEKFEGLCKVMKDVLGDKVEKVIVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKSDENKSVKDLVLLLFETALLSGFSLEEPNFGNRIHRMLKLGLS Neurospora_crassa VCSDPSKPGLQDHSSIDIIPDKANKTLTIRDTGIGMTKADLVNNLGTIARSGTKQFMEALTSMIGQFGVGFYSAYLVADRVTVVSKHNDDQYIWESSAGGTFTIRDGEPLAKIILHLEEQLDYLNESRIKEVVKKHSEFISYPIYLHVQISEVTEEGRRRSRTIKETRSEEEELNKQKPIWTRNPQDITQEEYAAFYKSNDWEDHLAVKHFSVEGQLEFRAILFVPKRAPFDLFETKTKSNIKLYVRRVFITEHATDLVPEWLSFIKGVVDSEDLPLNLSRETLQQNKIMKVIKNIVKKSIELFNEIAEDKEQFKFYSAFSKNIKLGIHEDAQNRSALAKLLRFHSTMTSLSDYVARMPEHQKNIYYITGESIKAVSKSPFLDALKEKGFEVLFLVDPIDEYAMTQLKEFEGKKLVDITKDFELEETEEEKKQREQEEKEYEDLCKALKNILGDKVEKVVVSHKLVGSPCAIRTGQFGWSANMERIMKAQALRDTSMSSYMSSKPKENKTVKSIVQLLYETSLLSGFTIDEPALPRGIHKLVSLGQN Oryza_sativa SLTDKSKLDAQPELFIHIVPDKASNTLSIIDSGIGMTKSDLVNNLGTIARSGTKEFMEALASMIGQFGVGFYSAYLVAERVVVTTKHNDDQYVWESQAGGSFTVTDGEQLGRITLYLDDQLEYLEERRLKDLIKKHSEFISYPISLWTEKTEKEISDEKKKKKIKEVSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKLNNIKLYVRRVFIMDNCEELIPEWLSFVKGIVDSEDLPLNISREMLQQNKILKVIKNLVKKCVELFFEIAENKEDYKFYEAFSKNLKLGIHEDSTNRNKIAELLRYHSTLTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKELKLDESEDEKKRKEELKEKFEGLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKAEENKSVKDLVLLLFETALLSGFSLDDPNFGSRIHRMLKLGLS Plasmodium_falciparum SITDTQKLSAEPEFFIRIIPDKTNNTLTIEDSGIGMTKNDLINNLGTIARSGTKAFMEAIQSMIGQFGVGFYSAYLVADHVVVISKNNDDQYVWESAAGGSFTVTDNEKLGRIILHLEDQLEYLEEKRIKDLVKKHSEFISFPIKLYCERQEKEITAEKRKKKIHTVEHEWEELNKQKPLWMRKPEEVTNEEYASFYKTNDWEDHLAVKHFSVEGQLEFKALLFIPKRAPFDMFENRKRNNIKLYVRRVFIMDDCEEIIPEWLNFVKGVVDSEDLPLNISRESLQQNKILKVIKNLIKKCLDMFSELAENKENYKFYEQFSKNLKLGIHEDNANRTKITELLRFQTSMIGLKEYVDRMKENQKDIYYITGESINAVSNSPFLEALTKKGFEVIYMVDPIDEYAVQQLKDFDGKKLKCCTKELDIDDSEEAKKDFETLKAEYEGLCKVIKDVLHEKVEKVVVGQRITDSPCVLVTSEFGWSANMERIMKAQALRDNSMTSYMLSKPSASKTVKDLIWLLFDTSLLSGFALEEPTFSKRIHRMIKLGLS Podospora_anserina SLSDPSKLDTGKDLRIDIIPDKENKTLTIQDTGIGMTKADLVNNLGTIARSGTKQFMEALTSMIGQFGVGFYSAYLVADRVTVVSKNNDDQYIWESSAGGTFNISDGPSIGRIILHLDEQTDYLNESKIKEVIKKHSEFISYPIYLHVQKEEVEVPDKPKTKKVKEVKTEEEELNKQKPIWTRNPQDITQEEYAAFYKSNDWEDHLAVKHFSVEGQLEFKAILFVPKRAPFDLFETKTKNNIKLYVRRVFITDDATDLIPEWLSFVKGVVDSEDLPLNLSRETLQQNKIMKVIKNIVKKALELFTEIAEDKEQFKFYTAFSKNIKLGIHEDSQNRNTLAKLLRFNSTQTSLSDYVTRMPEHQKNMYYITGESIKAVSKSPFLDSLKEKGFEVLFLVDPIDEYAMTQLKEFEGKKLVDITKDFELEETEEEKKQREAEEKEYDGLAKALKNVLGDKVEKVVVSHKLVGAPCAIRTGQFGWSANMERIMKAQALRDTSMSSYMSSKPKENKTVKSIVQLLFETSLLSGFTIEEPAFAERIHKLVALGLN Porphyra_yezoensis SLSDKSILDTEAAMEIRIIADKEAKTLTLQDTGVGMTKGDLVNNLGMIANSGTKSYMEALSSMIGQFGVGFYSAYLAADNVVVHTKHNDDQYVWESSAGGSFTIRKGPALTRVVLHLDDQQEWLEERRIKDLVKKHSEFIQYPIKLWVEKEEKEVEVKKKTKKIKEKEHEWQLLNKNKPIWTRKPEEVTKEEYASFYKTNDWEEHLTVKHFSLEGQLEFRAILFCPKRAPFDLFEPRKLNNIKLYVKRVFIMDNCEDIIPEYLNFVKGVVDSEDLPLNLSREMLQQNKILKVIKNLVKKCMDMFAEAAENKEDYVFYEQFSKNLKLGIHEDAQNREKLAELLRYNTTLTSLKEYVSRMKEGQKNIYYITGASKKAVENAPFLEKLKKKGFEVIYMTEPIDEYCVQQLKEYDGKKLVCTTKEMQLEESEEEKAAREAEAKACETLCEVIKENLGEKVEKVVVSDRLADSPCILVTGEYGWSANMERIMSSQALRDNSLSTYMSSRSRETKTVKDLVSLLFDTAMLSGFSLEEPHFAGRIQRMLMLGLQ Rattus_norvegicus SLTDPSKLDSGKELKIDIIPNPQEATLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQSMIGQFGVGFYSAYLVAEKVVVITKHNDDQYAWESSAGGSFTVRDGEPIGRVILHLEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKEEKEISDKKKTKKIKEKYIDQEELNKTKPIWTRNPDDITQEEYGEFYKTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKNNIKLYVRRVFIMDSCDDLIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIKNIVKKCLELFSELAEDKENYKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKELELPEDEEEKKKMEESKARFENLCKLMKEILDKKVEKVTISNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMMAKPETNKAVKDLVVLLFETALSLASHFRRPKHSNRIYRMIKLGLG Saccharomyces_cerevisiae SLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSSMIGQFGVGFYSLFLVADRVQVISKSNDDQYIWESNAGGSFTVTDNERIGRLRLFLDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEEKEVPIKPKTKKVKEEVQEIEELNKTKPLWTRNPSDITQEEYNAFYKSNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIKNIVKKLIEAFNEIAEDSEQFKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTLTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKDFELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALRDSSMSSYMSSKPKEQKTVKDLTKLLYETALLSGFSLDEPTFASRINRLISLGLN Salmo_salar SLTDPTKLDNGKELKIDVIPNVEERTLTLIDTGIGMTKADLINNLGTIAKSGTKAFMEALQSMIGQFGVGFYSAYLVAERVTVITKHNDDQYIWESSAGGSFTVKDGEPMLRVILHMEDQTEYVEEKRVKEVVKKHSQFIGYPITLFVEKEEKEISDKKKTKKIKEKYIDQEELNKTKPIWTRNPDDITMEEYGEFYKTNDWEEHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKNNIKLYVRRVFIMDSCEELIPEYLNFVRGVVDSEDLPLNISREMLQQSKILKVIKNIVKKCMELFGELAEDRENYKFYDGFSKNLKLGIHEDSQNRKKLSELLRYHSSLTSLTEYLTRMKDNQKSIYYITGESKDQVANSAFVERVRKRGFEVLYMTEPIDEYCVQQLKEFDGKTLVSVTKELELPEDEEEKKKMDEDKTKFENLCKLMKEILDKKVEKVTVSNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMMAKPETNKAVKDLVILLFETALLSGFSLDDPQHSNRIYRMIKLGLG Schizosaccharomyces_pombe SLSDPHALDAEKDLFIRITPDKENKILSIRDTGIGMTKNDLINNLGVIAKSGTKQFMEAAASMIGQFGVGFYSAYLVADKVQVVSKHNDDQYIWESSAGGSFTVTDGPRLLRIRLFMEDQLQYLEEKTIKDTVKKHSEFISYPIQLVVTREEKEVPEKKEKKKVKETTTETEELNKTKPIWTRNPSEVTKEEYASFYKTNDWEDHLAVKHFSVEGQLEFRAILFVPRRAPMDLFEAKKKNNIKLYVRRVFITDDCEELIPEWLGFIKGVVDSEDLPLNLSREMLQQNKIMKVIKNLVRRCLDMFNEIAEDKENFTFYDAFSKNLKLGIHEDAANRPALAKLLRYNSLLISLEDYITKMPEHQKNIYFITGESKQAVENSPFLEIFRAKKFDVLFMVDPIDEYAVTQLKEFEGKKLVNITKDLELEETDEEKAAREKLEKEYEEFAKQLKTILGDKVEKVVVSNKIVGSPCLLTTGQYGWSANMERIMKAQALRDTSMSAYMSSRPAEERSVKDLATILYETALLSGFTLDDPSYAQRINRLISLGLS Tetrahymena_thermophila SITDSEKAKLEPNFRIRIIPDKANNTLTLWDTGIGMTKKELINNLGTIAKSGTKAFMEALSSMIGQFGVGFYSAYLVAEKVEVISKSNDDQWRWESSAGGTFTVVDNPEKLRIILHMNDNLEFLEERRIKDLIKKHSEFIAFPIELQVEKTEKEETDDKKKKKVKVVHTEFEEQNKNKPLWMRKPEEITKEEYVNFYKTNDWEEHQAVKQFSVEGQLEFRAILFIPKRAPFDLFETKKKNNIKLYVRRVFIMDDCEELIPEYLNFIKGVVDSEDLPLNISREFLQHNKILKVIKNIVKKCLDLIQEVADNEEDFKFYEQFGKNLKLGIHEDSANREKLSSFLRYHSSLTTLKDYVSRMKEGQKDIFFITGESRAAVAASPFVESLRKRGYEVLYMVDPIDEYVIQQLKEYDGKKLKNCSKELELEQTEDEKKKFEEKKAAYEPLCKQIKEVLGDKVEKVVVGQRLDESPCVLVTGEYGWSANMERIMKAQALRDASMSTYMISKAQEAKTVKDLIWLLFETSLLSGFSLDDPSFANRIHRMIKLGLQ Theileria_parva AIKDPKQIEDQPDYYIRLYADKNNNTLTIEDSGIGMTKADLVNNLGTIAKSGTRAFMEALQSMIGQFGVGFYSAYLVADKVTVVSKNNADQYVWESTASGHFTVKDHEPLKRLILHLEDQTEYLEERRLKELVKKHSEFISFPISLSVEKTETEVTDKKKKRKVTNVTREWEMLNKQKPIWMRLPSEVTNEEYAAFYKTNDWEDHLAVKHFSVEGQLEFKALLFVPRRAPFDMFESRKKNNIKLYVRRVFIMDDCEELIPEWLSFVKGVVDSEDLPLNISRETLQQNKILKVIKNLVKKCLELFNELTEKKEDFKFYEQFSKNLKLGIHEDNANRSKIAELLRFETTLVSLKEYVDRMKSDQKYVYYITGESKQSVASSPFLETLRSRDYEVLYMTDPIDEYAVQQIKEFEGKKLKCCTKELDLDEGEDEKKSFEALKEEMEPLCKHIKEVLHDKVEKVVCGTRFTDSPCALVTSEFGWSANMERIMKAQALRDSSITSYMLSKSKETKTVKDLVWLLYDTALLSGFNLDEPTFGNRIYRMIKLGLS Triticum_aestivum SLTDKSKLDAQPELFIRIIPDKATNTLTLIDSGIGMTKSDLVNNLATIGRSGTKDFMEALASMIGQFGVGFYSAYLVAERVIVTSKHNDDQHVWESQAGGSFTVTDGEPLGRITLYLDDQLEYLEERRLKDLVKKHSEFISYPISLWTEKTEKEISDEKKKKKIKEVSHEWNLINKQKPIWMRKPEEITKDEFAAFFKTNDWEEHLGVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKLNNIKLYVRRVFIMDNCEELIPEWLSFVKGIVDSEDLPLNISRETLQQNKILKVIKNLVKKCIELFFEIAENKEDYKFYEAFSKNLKLGVHEDSTNRTKLAELLRYHSTLTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYSIGQLKEFEGKKLVSATKELKLDDSEEEKKRKEELKEKFEGLCKVIKEVLGDRVEKVIVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDTSMGGYMSSKAEENKSVKDLVMLLFENSLLSGFSLDDPNFGTRIHRMLKLGLS Trypanosoma_brucei SLTNQSVLGDEPHLRIRVIPDRVNKTLTVEDSGIGMTKADLVNNLGTIARSGTKSFMEALESMIGQFGVGFYSAYLVADRVTVVSKNNEDAYTWESSAGGTFTVTTDCDLKRIVLHLEDQQEYLEERRLKDLIKKHSEFIGYDIELMVENTEKEVTDKKKTKKVKEVKQEFVVQNKHKPLWTRDPKDVTKEEYASFYKSNDWEEQLSTKHFSVEGQLEFRAILFLPKRAPFDMFEPNKRNNIKLYVRRVFIMDNCEDLCPEWLGFLRGVVDSEDLPLNISRENLQQNKILKVIKNIVKKALELFEELAGNKEDYKFYEQFSKNVKLGIHEDSTNRKKLMELLRFHSSMTTLKDYVTRMKEGQKCIYYVTGDSKKKLETSPFIEQARRRGMEVLFMTDPIDEYVMQQVKDFEDKKFACLTKEVHFEETEEEKKQREEEKASYERLCKAMKEVLGDKVEKVVVSDRLATSPCILVTSEFGWSAHMEQIMRNQALRDSSMSAYMMRKAKENKAAKDLIFLLFDTSLLSGFTLDDPTYADRIHRMIKLGLS Trypanosoma_cruzi SLTNQAVLGDESHLRIRVVPDKANKTLTVEDTGIGMTKAELVNNLGTIARSGTKAFMEALESMIGQFGVGFYSAYLVADRVTVVSKNNDDAYTWESSAGGTFTVTTDCDLKRIVLHLEDQQEYLEERRLKDLIKKHSEFIGYDIELMVEKAEKEVTDKKKTKKVKEVTQEFVVQNKHKPLWTRDPKDVTKEEYAAFYKSNDWEEPLSTKHFSVEGQLEFRAILFVPKRAPFDMFEPSKRNNIKLYVRRVFIMDNCEDLCPEWLAFVRGVVDSEDLPLNISRENLQQNKILKVIKNIVKKALELFEEIAENKEDYKFYEQFGKNVKLGIHEDSANRKKLMELLRFHSSMTTLKDYVTRMKEGQKCIYYVTGDSKKKLETSPFIEQARRRGFEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEVHFEETEEEKKQREEEKTAYERLCKAMKDVLGDKVEKVVVSERLATSPCILVTSEFGWSAHMEQIMRNQALRDSSMSAYMMSKPKENKAVKDLVYLLFDTALLSGFTLDDPTYAERIHRMIKLGLS Zea_mays SLTDKSKLDAQPELFIRLVPDKASKTLSIIDSGVGMTKSDLVNNLGTIARSGTKEFMEALASMIGQFGVGFYSAYLVADRVMVTTKHNDDQYVWESQAGGSFTVTDGEQLGRITLFLDDQLEYLEERRLKDLVKKHSEFISYPIYLWTEKTEKEISDSKKKKKVKEVSHEWVQINKQKPIWLRKPEEITRDEYASFYKTNDWEDHLAVKHFSVEGQLEFKAILFVPRRAPFDLFDTRKLNNIKLYVRRVFIMDNCEELIPEWLGFVKGVVDSDDLPLNISRETLQQNKILKVIKNLVKKCIEMFFEIAENKDDYKFYDAFSKNIKLGIHEDSQNRAKLADLLRYHSTTTSLKDYVTRMKEGQKDIYYITGESRKAVENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKELKLDDEDDEEKKREERKKRFEELCKVIKDILGDRVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDSSMSAYMSSKGEENKSVKDLVLLLFETALLSGFSLDDPNFAARIHRMLKLGLN ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M606] TITLE Eukaryotic_cMDH; LINK TAXA = Taxa10; DIMENSIONS NCHAR=319; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Arabidopsis_thaliana VRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVATTDAVEGCTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQAAALEKHAAPNCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLSVPVSDVKNVIIWGNHSSSQYPDVNHAKVQEKPVRELVKDDAWLDGEFISTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYSVPSGLIYSFPVTCR-NGDWSIVQGLPIDEVSRKKMDLTAEELKEEKDLA Echinococcus_granulosus LRVLITGAAGQIAYNLSNMVANGNLFGKDQQIILHLLDIPEAKTVLDGVVMELQDCAFTVLAGIVPTHCLKEAFTDIDVALMVGAMPRKQGMERRDLLSSNVKIFKEQGEALDKYAKKTVKALVVGNPANTNCLIMSKYAPSIPKENFTALTRLDHNRAIYQVAAKAGVPNTCVKNVCIWGNHSNKQFPDLSHAVVTQHPAKELINDEKWVKEVFTPCVQNRGAAVIGLRKLSSAASAAKAIVDQMRDWWFGTKEGEWVSMSVYSTGHYGAPKDIYFSFPVTIK-DGHYKVVDGLSMDEWSRSLFNLSADELVDEREVA Flaveria_bidentis INVAVSGAAGMISNHLLFKLASGEVFGPDQPISLKLLGSERSFAALEGVAMELEDSLYPLLRQVSIGIDPYEIFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNPCNTNALICLKNAPNIPPKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIHGIPVTEVIRDRKWLEDEFTNMVQTRGGVLIKKWGRSSAASTAVSIVDAIRSLVTPTPEGDWFSTGVYTNGPYGIAEDIVFSMPCRSKGDGDYEFVKDVIFDDYLSKKIKKSEDELLAEKKCV Homo_sapiens IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTANDVKNVIIWGNHSSTQYPDVNHAKVKEVGVYEALKDDSWLKGEFVTTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGVISDGSYGVPDDLLYSFPVVIK-NKTWKFVEGLPINDFSREKMDLTAKELTEEKESA Medicago_sativa VRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIAPAAESLNGVKMELVDAAFPLLKGVVATTDVVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAANCKVLVVANPANTNALILKEFAPSIPERNISCLTRLDHNRALGQISERLNVQVSDVKNVIIWGNHSSTQYPDVNHATVNEKPVRQLVSDDAWLNGEFISTVQQRGAAIIKARKLSSALSAASAACDHIRDWVLGTPQGTFVSMGVYSDGSYNVPSGLIYSFPVTCA-NGEWKIVQGLSIDEFSRKKLDLTAEELTEEKNLA Mesembryanthemum_crystallinum LRVLVTGAAGQIGYALVPMIARGIMLGANQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAAEACKGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLNVQVSDVKNVIIWGNHSSTQYPDVNHATVKDKPVRELVADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIHDWVLGTPEGTWVSMGVYSDGSYNVPAGIIYSFPVTCK-NGEWTIVQGLPIDDDSRKKMDATAAELVEEKTLA Mycobacterium_leprae LKVAVTGAAGQIGYSLLFRLASGSLLGLDRPIELRLLEIEPALKALEGVVMELDDCAFLLLAGVEIGADPNKVFDGVNLALLVGARPRGPGMERGDLLEANGAIFTAQGKALNAVAAADIRVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAIAQLATKTGSAVTDIRKMTIWGNHSATQYPDVFHAEIGGKNAAEVVGDQAWIEDYFIPTVAKRGAAIIDARGASSAASAASATIDAARDWLLGTPEGNWVSMAVVSDGSYGVPEGLISSFPVTTT-DGDWTIVRGLGIDDFSRGRIDKSTAELADERMAV Mycobacterium_tuberculosis LKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALQALEGVVMELDDCAFPLLSGVEIGSDPQKIFDGVSLALLVGARPRGAGMERSDLLEANGAIFTAQGKALNAVAADDVRVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIWGNHSATQYPDLFHAEVAGKNAAEVVNDQAWIEDEFIPTVAKRGAAIIDARGASSAASAASATIDAARDWLLGTPADDWVSMAVVSDGSYGVPEGLISSFPVTTK-GGNWTIVSGLEIDEFSRGRIDKSTAELADERSAV Sorghum_bicolor VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKDTKWLEEEFTITVQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGPYGIAEDIVFSMPCRSKGDGDYELATDVSMDDFLWERIKKSEAELLAEKKCV Spinacia_oleracea ITIAISGAAGTISNHLLFKLASGVVFGPDQPIALKLLGSEKSFHALEGVAMELEDSLYPLLREVSIGIDPYEVFEDAEWALLIGAKPRGPGMERADLLDINGKIYAEQGKALNAVASPNVKVIVVGNPCNTNALICLKNPPNIPAKNFHSLTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFVNAQIGGVPVKEVIKAQKWLEEEFTEKVRKRGGVLIQKWGRSSAASTAVSIVDAINPLITPTPPGDWFPSGVYTNGPYGIAEDLIYSMPCRSKGDGDYELVKDVIFDDYLRKRIKTSEEELLAEKRCT Sus_scrofa IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKAQKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGSYGVPDDLLYSFPVTIK-DKTWKIVEGLPINDFSREKMDLTAKELAEEKETA Thermus_flavus VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELV-DMEWYEKVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAK-DGAYRVVEGLEINEFARKRMEITAQELLDEMEQV Trichomonas_vaginalis IHILITGAAGQIGYALTFRIAKGDLCG-DRKVVLHLLEIPFGMKALEGCVMELQDCAFPNVAGIVWTDKVEEAFKGVDVAFLVGSFPRKDGMDRSDLLAKNGGIFTVQGKALNDYAKPTVKVLVVGNPANTNCLIAQASAPKLQNKNWCAMTRLDHNRMVGALAAKFGVTPEKIHKVCIWGNHSNTQVPDTTHATVDTVKVADKL-PKEYLEGEFAQMIATRGGAVIKMRGASSAASAANAALTCVKDWLYGTAEGDFVSMAIPVPDPYGIKQGTIFSFPVTVSKDGEVHVVEGLELNDWVKGRLEATEKELIGEKETA Zea_mays ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zea_mays MRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAHAAPNCKVLVVANPANTNALILKEFAPSIPEKNVTCLTRLDHNRALGQISERLNVQVSDVKNVIIWGNHSSSQYPDVNHATVKEKPVRELVSDDEWLNGEFITTVQQRGAAIIKARKFSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPSGLIYSFPVTCS-GGEWKIVQGLPIDEFSRKKMDATAQELTEEKTLA ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M608] TITLE Eukaryotic_eRF3; LINK TAXA = Taxa12; DIMENSIONS NCHAR=269; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . ] Arabidopsis_thaliana STIGGQILFLSGQVDDRQIQKYKEAKDKSRSWYMAYIMDTNEEERLKGKTVEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQADIGVLVISATREHVQLAKTLGVSKLIVVVNKMDNWSKERYDEIFLPISGLMGKNMPWWPSFFEVLDPPRDPNGPFRMPIIDKGKVESGSIRGDSLVVMPNKEQVKVVAICDAGPGENLRVRFTAGYKAILHIHAVVEECEIIELKSQIDLFVKNGAAVVCRIQSICIEKFSDFPQLGRFTLR Caenorhabditis_elegans STIGGQLMFLTGMVDKRTLEKYREAKEKGRSWYLSWCMDTNDEEREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISATREHSMLVKTAGVKHLVILVNKMDKWEEERFKEIYVPCSGLTGAFINWYPCFIEFIDYKRDFNGPVRCTVAEKGKMESGCVQGDTLVVMPNKQPVQVLQIADVVAGDNIKFKIASGYSCVLHIQSAVEEVTVKGVIATIDKFVKQDEKCIMRLEPFVLEPFKEYPYLGRFTLR Candida_albicans STMGGNILYLTGSVDKRTVEKYREAKDAGRGWYLSWVMDTNKEERNDGKTIEVGKAYFETDKRRYTILDAPGHKMYVSEMIGGASQADVGILVISATREHALLAKTQGVNKIIVVVNKMDGWSKERYQECYMPVSGYTGAGLPWYPSLLEYLDMNRKINGPFMMPVSGKGKIESGHVKGTNLIMMPNKTPIEVLTINEAFSGEQVRLKLSNGFSCVMHLHTAIEEVKFIELKHKLEAFAKKGMKIIAILELVCAETYKDYPQLGRFTLR Dictyostelium_discoideum STLSGSIMVLTGQVDPHTLAKYREAKENHRGWIYAYIMDTNEEERTKGKTVEVGRAHFETTKKRYTILDAPGHRLYVPNMIIGAAQADVGILVISSTIEHARLAKMIGIKYLVVFVNKMDKWSKARYDEIFVPGSGYGTLNVDWYPSLIGTLDMERNEGGALRIPITTSGKVESGTISGQSIHIMPGKTKVEVISLGDARPGENITIAFTPSFSAIFHAHTAVEDVTVKSLIATIDTFCKVGDAVKCRLVAVCLEEFTTNPQLARFTIR Drosophila_melanogaster STIGGQIMSLTGMVHKRTLEKYREAREKSRSWYLSWGLDTNQEERDKGKTVGVGRAFFETDRKHFTILDAPGHKSFVPNMIGGAAQADLAVLVISATREHAMLAKTAGVKHLVVLVNKMDNWDQTRYNECFMPCSGLSGTGLPWYPAFIPFIDLNRKSDGPFIMPIVDKGKVESGTARGQNLLVMPNRTQVAVDQLSDVGPGENVKIKICAGYSAVMHIHCAAEEVTVKALICLVDRFVKQDQVAIMRIEMICLEQFKLFPQMGRFTLR Euplotes_octocarinatus STICGNLMFMTGMVDERTTEKFQEAKEKNRSWWLAYVMDINDDEKSKGKTVEVGRATMETPTKRYTIFDAPGHKNYVPDMIMGAAMADVAALVISATREHAQLARSLGVSKLVVVVNKMDQWNEARYNDIFIPISGLNGQNITWYPTLIEILDPKRNADGPLRVPVLDKGKVESGVIKGSKLAVMPNNLKCQVVGINCANPGENIQIKITPGYKSMMHLHTISDEIVIAG-VYELDKYCKSGSKVIVKISPVCLEKYEFIEHMGRFTLR Giardia_lamblia STISGHLVSDLGKLDKRQLEKLQQAKALNRSWKYAFAMDTSEEEREKGKTVECARESFLTPNGRITIIDAPGHKGFVHNMISGAAQADTAILVISATSEHALLAYVNGIKQIVCLINKMDEYCKKRYDSIFLPISGFTGENLEWYPSFLDLLDPKRDTKSPLCACVSGHVKVEQGKMSGDTVLCLPENDILDIEGEEEAKAGDNVRIKITSGYSCVAHINLQQVGCQIRAILADLDYIVSTEPLKVRRPTPVCVQSTPGHEALGRIILR Homo_sapiens STIGGQIMYLTGMVDKRTLEKYREAKEKNRTWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISATREHAMLAKTAGVKHLIVLINKMDNWSNERYEECFMPCSGLTGANLPWYLPFIPYLDFNRSVDGPIRLPIVDKGKLESGSICGQQLVMMPNKHNVEVLGISDVAPGENLKIRICPGYNAVLHIHTCIEEVEITALICLVDRFVKQDQVCIARLRTICLETFKDFPQMGRFTLR Neurospora_crassa STLGGAILYVTGMVDQRTLDKYREAKDMGRTWYLSWALDLTNEERAKGKTVEVGRGFFETDKRKYSILDAPGHKTYVPNMIGGASQADVGILVISATREHAMLAKTQGVNKLVVVINKMDNWSEERYKECFMPVAAQQTMGIPWYPSLLEYLDLERKVNAPFMMAVSGKGKIEAGVIKGMSLIMMPNKQSIEISAVGEAQCGEQVRLRLTAGFNCVLHVHAAIEEVTFAALLHKLQSHAKKGDSIIARLESVCVERFEDYPQMGRFTLR Nicotiana_tabacum STIGGQILLLSGQVDDRTIQKYREAKDKNRSWYMAYIMDTNEEERVKGITVEVGRAHFETDTTRFTILDAPGHKSYVPNMISGRSQADIGLLVISATREHVQLAKTLGVTKFLVVVNKMDNWSKERYDEIFLPISGLLGSNLPWWPCLFETLDPPRDPNGPLRMPIIDKGKIESGSIHGDNLLIIPNKAAVKVLAICDVGPGENVRVRFTAGYKAVLHIHSVVEECEIVELMQQIDLFVKNGAIVLCRVQLICVEKFSDFAQLGRFTLR Oxytricha_trifallax STISGNLMYLMGAVDQRTIQKYEEAKEKNRSWWLAYVMDVSEEEKAKGKTVEVGRANIETPKKRWTIFDAPGHKNYVPNMIMGAALADFGALVISATREHIQLAKSLGISKIVVAVNKMDKWSKDRYTEIFVPISGLNGDNLNWYPTLLEILDPQRDPEGPLRIPVLDKGKVESGTVKGDQLAVMPTNLLAQVQTINSAKPGENVQLRLSKGYQFILHIHTVAEEASIIS-SVEKNQFVQSYAKAVCRIQPIPLEKFEFLPQMGRFTMR Plamodium_falciparum STACGNILYILGYVDDRTIEKYREAKEKSRSWFLAFIMDINEEERQKGKTVEVGRAHFETKDRRFTILDAPGHKNFIPNMISGAAQADIGVLIISATREHTLLARTLGINQLIVAINKMDNWSESRYEEIFVPISGLTGQNLSWYPTLFNILNPPWDENGPLRIPLLEGGKIESGTLYNMNCTLMPNKVKVKVMNVLEAKPGENVRVRITAGYFCIFHAHTACEEIQFVEMLEVIDKFIKSDCIVTAHFLPVCVEVYDNLPQLGRFTLR Saccharomyces_cerevisiae STMGGNLLYLTGSVDKRTIEKYREAKDAGRGWYLSWVMDTNKEERNDGKTIEVGKAYFETEKRRYTILDAPGHKMYVSEMIGGASQADVGVLVISATREHALLAKTQGVNKMVVVVNKMDNWSKERYDQCFMPVSGYSGANLPWYPTLLEYLDVDRHINAPFMLPIAAKGKIESGHIKGQSTLLMPNKTAVEIQNINEAMCGEQVKLRIAAGFSCVMHVHTAIEEVHIVKLLHKLEAFAKKGMKVIAVLEPVCVETYQDYPQLGRFTLR Schizosaccharomyces_pombe STLGGNILFLTGMVDKRTMEKIREAKEAGKSWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISATREHAVLARTQGINHLVVVINKMDQWSEERYKECYMPVSAYTGQNVPWYPSLLEYLDLERKVNAPFIMPIASKGKIEAGSIKNSNVLVMPINQTLEVTAIDESICGDQVRLRLTTGYSCVMHIHTAVEGVSFAKLLHKLDMFATKGMKIIAELEPVCMERFEDYQYMGRFTLR Trichomonas_vaginalis STLCGHVLYQAGCVDQRTIEQYAESAKEGRSWYFSWVMDLSKEERSKGKTEEVGVAHFETAQNKYTILDAPGHRSYVPQMIGGAVQADVAVLVISATSEHLLIARTAGVREIIIVVNKMDKWSKERFDQIYIPIAALTGFNLPWYPTLFEKLDPVRNETDSFRLPVIDRGKLEKGVIKGDQVIVMPSRKLGTISSIVDAVPGDNIRVAITAGYEAMCHIHTETVPVSVEKL--RTLRFIKRGCLAEVILKPICVEVAKDFPQLGRFIIR Trypanosoma_brucei STISGHLLMEKGLVDQREMEKLREAEVHHRGWEYAYVMDVSEDERTKGITRETGAAYVETEKRRITVLDAPGHKAFVPSMIGGATQADVCVLVISSTREHAMLVRTCGVKQMICVINKMDNWSKERYDAIFIPIAGLTGDNLPWYPTMMSFIDPETKSENVLCIPLVGSGKVESGSVAGEKIQILPSKQEAVVEGIIECYPGDNVHLRICAGSRVMLHAHAAQEEVSFHKLLAKVDTHVKAGDVVIARMEALVLEPHKDFDKMGRFMLR Yarrowia_lipolytica STLGGQILYLTGTVNKRTIEKMKEAADAGRGWYLSWVMDINKEERAEGKTVEVGRSYFETEKRRYTLLDAPGHKMYVPSMIGGAAQADAGILVISATREHAMLAKTQGINKLVIAINKMDNWSKERYDECFMPVSGFTGANVPWYPSLLELLDLERNLTGPFMLPISNKGKIEVGQVKGDNLVVMPSKVPVEVTTLKEASVGEQIRLKLSTGFSCVMHIHTAAEEVTFTALLHKLEAFAKKGMKIIARLEPVCMDEFSKTPQLGRFTLR ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M597] TITLE 'Archaebacterial EF-1alpha'; LINK TAXA = Taxa11; DIMENSIONS NCHAR=269; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . ] Aeropyrum_pernix STLVGHLLYRLGYIEEKKLKELEQAKSRGKSFKFAWILDKMKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSATREHLLLARTMGIEQIIVAVNKMDNYDQKRYEFVFIPVSAWKGDNLPWYPTLVEALDPAKPVDKPLRIPVQNVGRVETGVLRGDKVVFMPPGVVGEVRSIMHAEPGDNIGFAITVGYTPVIHVHTASVSSRIIEIKAKLDQFLKAGDAAIVRFKPLVVEKFSEIPQLGRFAMR Archeoglobus_fulgidis STLIGRLLYETGEIPEHIIEKMKEAQEKGKTFEFAWVMDRLKEERERGVTIDVAHRKFQTDKYYITIVDCPGHRDFIKNMITGASQADAAVLVMDVTREHIFLARTLGINQIIVAINKMDNYDQKEYEAAFIPVSAYYGDNVPWYPTLLEAFDPEKLVDKPLRIPIQDVGRVESGVLRGDKVVFEPAGVSGEVKSIMHAYPGDNIGFNITVGYTPVVHAHTAQIACRFVELQKKIDQFLKTGDAAIVKLEPMVIERVKDIPPMGRFAIR Desulfurococcus_mobilis STMTGHILYRLGYFDEKTVKMIEESKKMGKSFKFAWLLDRMKEERERGVTISLSYMKFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSATREHAILARTMGINQLIVAINKMDPYSEKRYNEIFIPISAWTGENLPWYPTLVEALDPPKPINKPLRIPIQDVGRVETGVLKGDKLVFMPAGLVAEVKTITHAEPGDNIGFNIAVGYTPVIHVHTASVACRITEIIAKIDHFLKQGDIAIVKFKPLVVEKYSDFQGLGRFAMR Halobacterium_halobium STMVGRLLYETGSVPEHVIEQHEEAEEEGKGFEFAYVMDNLAEERERGVTIDIAHQEFTTDEYEFTIVDCPGHRDFVKNMITGASQADNAVLVVAATREHVFLSRTLGIDELIVAVNKMDDYDESKYNEVFIATSAFEGDNVPWYPTLLEALNPQPPTDADLRLPIQDVGRIETGVMNGDNVSFQPSDVGGEVKTIMHAEPGDNVGFNITAGYTPVFHAHTAQVACTIESIDKKMDDFIQSGDAAVVTVRPLSLEPSSEIPELGSFAVR Halobacterium_marismortui STLVGRLLYETGSVPEHVIEQHEEAEEKGKGFEFAYVMDNLAEERERGVTIDIAHQEFSTDTYDFTIVDCPGHRDFVKNMITGASQADNAVLVVAATQEHVFLARTLGIGELIVAVNKMDDYGESEYKQVFIPVSAFEGDNIGWYEILLEALNPEPPTDAPLRLPIQDVGRVETGILNGDNVSFQPSDVSGEVKTVMHAEPGDNVGFNITEGYTPVFHAHTAQVACTVESIDKKIDDFIQNGDAAVVTVRPLSIEPSSEIPELGSFAIR Methanococcus_jannaschii STTVGRLLYDSGAIDPQLLEKLREAQERGKGFEFAYVMDNLKEERERGVTIDVAHKKFETQKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVDVTREHMFLARTLGIKQIAVAINKMDNYSQEEYEKMFIPTASLKGDNVPWYPTLVEALDPEKPTNLPLRIPIQDVGRVETGILRGDKVVFEPAGVSGEVKSIMHAEPGDNIGFNITVGYTPVFHAHTAQVACTFIELLKKLDQFLKTGDAAIVKIKPMVIENVREIPQLGRFAIR Methanococcus_kandleri STTVGRLLLDGGAIDPQLIVRLKEAEEKGKGFEFAYVMDGLKEERERGVTIDVAHKKFPTAKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVNVTREHVFLIRTLGVRQLAVAVNKMDNFSEADYNELFVPVASLHGDNVPWYPTIAEVIDPEKPTNLPLRLPIQDVGRVETGIIKGDKVVFEPAGAIGEIKTVMHAEPGDNIGFNLTDGYTPVFHTHTAQIACTFAEIQKKLNDFLKAGDAAIVKLIPMVIESVKEIPQLGRFAIR Pyrobaculum_aerophilum STLVGRLLYETGYVDEKALKEIEMAKKIGKDFAFAWILDRFKEERERGVTIEATHVGFETNKLFITIIDLPGHRDFVKNMIVGASQADAALFVISAGREHLFLIRTLGVQQIVVAVNKMDNYDQKRYEQVFIPVSAIKGDNIPWYPTLLEVFDPQRPVDKPLRMPIQDVGRVETGVLKGDRVVIVPPAKVGDVRSITHAQPGDNIGVNIGPGYAPVMHIHTATVPVQITELVSKLDQFIKQGDVAIVKIKPVVAEKFSDFPPLGRFALR Pyrococcus_horikoshii STTIGRLLYDTGNIPETIIKKFEEMGEKGKSFKFAWVMDRLKEERERGITIDVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATKEHAFLARTLGIKHIIVTINKMDNYDQKVFEKVVIPTSAWNGDNVPWYPTLIEALDPEKPIDKPLRIPIQDVGRVETGKLKGDVVIFEPASIQGEVKSIMHALPGDNIGFNITVGYSPVLHAHTAQIPVRFEQILAKVDQFIKTGDSAIVVLRPVVLEPVKEIPQLGRFAIR Pyrococcus_woesii STTIGRLLYDTGNIPEQIIKKFEEMGEKGKSFKFAWVMDRLREERERGITIDVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATKEHAFLARTLGIKHIIVAINKMDNYNQKRFEEVVIPISAWEGENVPWYPTLIEALDPEKPVDKPLRIPIQDVGRVETGKLRGEVVIFEPASIQGEVKSIMHALPGDNIGFNITVGYSPVLHAHTAQVPVRFEQLLAKLDQFIKTGDAAIVILRPVVLEPVKEIPQLGRFAIR Sulfolobus_solfataricus STLVGRLLMDRGFIDEKTVKEAEAAKKLGKSEKFAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSATREHIILAKTMGLDQLIVAVNKMDPYDEKRYKEIFVPVVAPSGDNIKWYPTLEEYLDPPKPVDKPLRIPIQDRGRVESGVLKGDKIVFMPAGKVGEVRSITHAEPGDNIGFNLANGYTPVLHVHTASVACRVSELVSKLDQFLKQGDVAIVKFKPLCVEKYNEFPPLGRFAMR Thermococcus_celer STTIGRLLFDTANIPENIIKKFEEMGEKGKSFKFAWVMDRLKEERERGITIDVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAVTKEHAFLARTLGINNILVAVNKMDNYDEKKFKAVIIPISAWEGDNVPWYPTLIEALDPPKPTDKPLRIPIQDVGRVETGVLRGDVVIFEPASIQGEVKSIMHALPGDNIGFNITVGYTPVLHAHTLQVAVRFEQLLAKLDQFIKTGDSAIVVLRPMVIEPVKEIPQMGRFAIR Thermoplasma_acidophilum STLVGRLLYEHGEIPAHIIEEYKEAEQKGKTFEFAWVMDRFKEERERGVTIDLAHRKFETDKYYFTLIDAPGHRDFVKNMITGTSQADAAILVISATREHAFLARTLGVPQMVVAINKMDPYSEKRYNEVFVPISGYKGDNVPWYPTLLQALDPEKPINKPLRIPVEDVGRVETGVLKGDKVIFLPADKQGDVKSIMHAEPGDNIGFNIAPGYKPVFHVHTAQVACRIDEIVKTLNDFIKNGDVAIVKVIPLVIEKVSEIPQLGRFAVL ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M126] TITLE 'Eukaryotic EF-1alpha'; LINK TAXA = Taxa13; DIMENSIONS NCHAR=269; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . ] Acrasis_rosea STTTGHLIYKCGGIDKRVIEKFKEAAEIGKSFKYAWVMDKLKAEKERGITIDISLWKFQSAKYDFTIIDAPGHRDFIKNMITGTSQADVAILMIDSTREHALLAQTLGVKQMIVCLNKFDNFSQARYDEIFIPLSGFQGYNMPWYPCLLEALDPKRPTDKPLRLPLQDVGRVETGLLKGMNVTFAPGNKTTEVKSVMHAEPGDNVGFNISNGYSPVLDCHTAHIACKFETIKSLIDKGLKRGDSGIVKLVPMCVESYTEYPPLGRFAVR Arabidopsis_thaliana STTTGHLIYKLGGIDKRVIERFKEAAEMNKSFKYAWVLDKLKAERDRGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTREHALLAFTLGVKQMICCCNKMDKYSKARYDEIFVPISGFEGDNMDWYPTLLEALDPKRPSDKPLRLPLQDVGRVETGMIKGMVVTFAPTGLTTEVKSVMHALPGDNVGFNIGNGYAPVLDCHTSHIAVKFSEILTKIDKFLKNGDAGMVKMTPMVVETFSEYPPLGRFAVR Blastocystis_hominis STTTGHLIYACGGIDKRTIERFEGGQRIGKSFKYAWVLDKMKAERERGITIDISLWKFQTEKYFFTIIDAPGHRDFIKNMITGTSQADVAILIIAATREHALLANTLGVKQMICCVNKMDNYSEARYKEIFIPISGFNGDNMPWYPTLIEALDPKRPVDKPLRLPLQDVGRVETGILKGMTVTFAPVGVTTEVKSVMHALPGDNVGFNIRPGYCPVMDCHTAHIACKFEKIMSEMDDIVKNGKSMMAELVPLCVESFQDYPPLGRFAVR Caenorhabditis_elegans STTTGHLIYKCGGIDKRTIEKFKEAQEMGKSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACTREHALLAQTLGVKQLIVACNKMDPFSEARFTEIFVPISGFNGDNMPWFKTLLEALDPQRPTDRPLRLPLQDVGRVETGIIKGMVVTFAPQNVTTEVKSVMHAVPGDNVGFNISNGYTPVLDCHTAHIACKFNELKEKVDKFLKSGDAGIVELIPLCVESFTDYAPLGRFAVR Cryptosporidium_parvum STTTGHLIYKLGGIDKRTIEKFKESSEMGKSFKYAWVLDKLKAERERGITIDIALWQFETPKYHYTVIDAPGHRDFIKNMITGTSQADVALLVVPATREHALLAFTLGVRQMIVGINKMDEYKQSRFDEIFVAISGFVGDNMPWYKTLVEALDPKRPTDKPLRLPLQDVGRVETGIIRGMNVTFAPAGVTTEVKSVMHAVPGDNVGFNIKNGYSPVVDCHTAHISCKFQTITAKMDKLIKSGDAALVVMQPLCVEAFTDYPPLGRFAVR Cyanophora_paradoxa STTTGHLIYKCGGIDKRTIEKFKEAAEIGKSFKYAWVLDKLKAERERGITIDIALWKFETPKYYVTIIDAPGHRDFIKNMITGTSQADCAVLVIPATREHALLAYTLGVKQMIVAVNKMDNYGQPRFEEIFVPISGFNGDNMGWYPTLVEALDPKRPSEKPLRLPLQDVGRVETGVIKGMTVVFAPSAVTTEVKSVMHALPGDNVGFNIGAGYSPVVDCHTAHIACKFSELITKIDKFVKSGDACMARLIPMCVEAFTNYPPLGRFAVR Dictyostelium_discoideum STTTGHLIYKCGGIDKRVIEKYKEASEMGKSFKYAWVMDKLKAERERGITIDIALWKFETSKYYFTIIDAPGHRDFIKNMITGTSQADCAVLVIASTREHALLAYTLGVKQMIVAINKMDNYSQARYDEIFVPISGWNGDNMEWYPTLLEALDPKRPHDKPLRIPLQDVGRVETGIIKGMVVTFAPAGLSTEVKSVMHARPGDNVGFNIHAGYSPVLDCHTAHIACKFTEIVDKVDVVLKNGDAAMVELTPMCVESFTEYPPLGRFAVR Dinenympha_exilis STTTGHLIYKCGGIDERTIKKFQESEAMGKSFKYAWVLDKLKAERERGITIDIALWKFETNKYYFTIIDAPGHRDFIKNMITGTSQADAAILVVAATREHALLAYTLGVEQMIVCVNKMDNWAESRYNEIMIPISGFNGDNMPWYPILFDALDPKRPSDKPLRLPIQDVGRVETGILTGQVITIAPCMITTEVKSVMHAVPGDNVGFNIQNGYTPVLDCHTSHIACKFKEIQSKIDKFIKTGDSAIVEMQPMVVETFVEYPPLGRFAVR Entamoeba_histolytica STTTGHLIYKCGGIDQRTIEKFKESAEMGKSFKYAWVLDNLKAERERGITIDISLWKFETSKYYFTIIDAPGHRDFIKNMITGTSQADVAILIVAATREHILLSYTLGVKQMIVGVNKMDQYKQERYEEIFVPISGFQGDNMPWYPTLIGALDPERPVDKPLRLPLQDVGRVETGILKGTIVQFAPSGVSSECKSIMHAIPGDNVGFNIRKGYTPVLDCHTSHIACKFEELLSKIDEYIKNGDSALVKIVPLCVEEFAKFPPLGRFAVR Euglena_gracilis STTTGHLIYKCGGIDKRTIEKFKEASEMGKSFKYAWVLDKLKAERERCITIDIALWKFETAKSVFTIIDAPGHRDFIKNMITGTSQADAAVLVIDSTREHALLAYTLGVKQMIVATNKFDKYSQARYEEIFIPISGWNGDNMGWYLTLIGALDPKRPSDKPLRLPLQDVGRVETGVLKGDVVTFAPNNLTTEVKSVMHAVPGDNVGFNIGNGYAPVLDCHTCHIACKFATIQTKIDKFIKSGDAAIVLMKPMCVESFTDYPPLG-VSCG Giardia_lamblia STLTGHLIYKCGGIDQRTIDEYKRATEMGKSFKYAWVLDQLKDERERGITINIALWKFETKKYIVTIIDAPGHRDFIKNMITGTSQADVAILVVAATREHATLANTLGIKTMIICVNKMDKYSKERYDEIYIPTSGWTGDNIPWYPCLIDAIDPKRPTDKPLRLPIQDVGRVETGELAGMKVVFAPTSQVSEVKSVMHAGPGDNVGFNIQPGYTPVIDCHTAHIACQFQLFLQKLDPDAGRGDCIIVKMVPLCCETFNDYAPLGPFAVR Hexamita_inflata STLTGHLIYKCGGIDQRTLEDYKKANEIGKSFKYAWVLDQLKDERERGITINIALWKFETKKFIVTIIDAPGHRDFIKNMITGTSQADVAILVVAATREHATLANTLGIKTMIVAVNKMDNYSEARYTEIFVPLSGWTGDNIPWYKCLIECIDPKRPNDKPLRLPIQDVGRVESGELIGMMVVFAPAGEKTEVKSVMHAGPGDNVGFNINPGYTPVLDCHTSHLAWKFDKFLAKLNTEAVRGECVLMQIVPLCVESFEQYPALGRFAVR Homo_sapiens STTTGHLIYKCGGIDKRTIEKFKEAAEMGKSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAATREHALLAYTLGVKQLIVGVNKMDPYSQKRYEEIFVPISGWNGDNMPWFTTLLEALDPTRPTDKPLRLPLQDVGRVETGVLKGMVVTFAPVNVTTEVKSVMHALPGDNVGFNISAGYAPVLDCHTAHIACKFAELKEKIDKFLKSGDAAIVDMVPMCVESFSDYPPLGRFAVR Naegleria_andersoni STTTGHLIYKCGGIDKRVIEKFKEAAEMGKSFKYAWVLDKLKAERERGITIDIALWKFESKKYVFTIIDAPGHRDFIKNMITGTSQADVAILVVDSTREHALLAYTLGIKQMIVCMNKFDSYKEDRYNEIFVPISGWTGDNMPWYPCLLDALDPVRPTDKPLRLPFQDVGRVETGKLKGMMIHFAPGQADTEVKSVMHAGPGDNVGFNIRAGYTPVLDCHTSHIACKFDKLIDKIDEKIKKGDSAIVQVIPMCVEGFTEYPPLGRFAVR Nicotiana_tabacum STTTGHLIYKLGGIDKRVIERFKEAAEMNKSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTREHALLAFTLGVKQMICCCNKMDKYSKARYDEIFVPISGFEGDNMDWYPTLLEALDPKRPSDKPLRLPLQDVGRVETGVLKGMVVTFGPTGLTTEVKSVMHALPGDNVGFNIGNGYAPVLDCHTSHIAVKFAEILTKIDKFLKNGDAGMVKMIPMVVETFSEYPPLGRFAVR Physarum_polycephalum STTTGHLIYKCGGIDKRTIEKFKEAAEMGKSFKYAWVLDKLKSERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADAAVLVIASTREHALLAYTLGVKQMIVAINKMDNWSQARYDEIFVPISGWNGDNMPWYPTLLEALDPKRPTDKPLRVPLQDVGRVETGILKGMIVTFAPANLSTEVKSVMHAVPGDNVGFNIHAGYAPVLDCHTAHIACKFTEILSKVDKNIKNGDAAIVKLTPMCVESFTDFPPLGRFAVR Phytophthora_capcisi STTTGHLIYKCGGIDKRTIEKFKEAAELGKSFKYAWVLDNLKAERERGITIDIALWKFESPKYFFTVIDAPGHRDFIKNMITGTSQADCAILVVASTREHALLAFTLGVKQMVVAINKMDMYGQARYEEIFVPISGWEGDNMPWYPFLLEALDPKRPSDKPLRLPLQDVGRVETGVIKGMVATFGPVGLSTEVKSVMHAVPGDNVGFNIGNGYSPVLDCHTAHVACKFKEITEKMDKFVKSGDACMVILEPMTVESFQEYPPLGRFAVR Plasmodium_falciparum STTTGHIIYKLGGIDRRTIEKFKESAEMGKSFKYAWVLDKLKAERERGITIDIALWKFETPRYFFTVIDAPGHKDFIKNMITGTSQADVALLVVPATKEHALLAFTLGVKQIVVGVNKMDKYSEDRYEEIFIPISGFEGDNLPWYRTLIEALDPKRPYDKPLRIPLQGVGRVETGILKGMVLNFAPSAVVSECKSVMHARPGDNIGFNIKNGYSPVLDCHTAHISCKFLNIDSKIDKSIKSGDSALVSLEPMVVETFTEYPPLGRFAIR Podospora_anserina STTTGHLIYKCGGIDKRTIEKFKEAAELGKSFKYAWVLDKLKAERERGITIDIALWKFETPKYYVTVIDAPGHRDFIKNMITGTSQADCAILIIAATREHALLAYTLGVKQLIVAINKMDKWSEARFNEIFVPISGFNGDNMPWYKTLLEAIDPKRPTDKPLRLPLQDVGRIETGILKGMVVTFAPSNVTTEVKSVMHGVPGDNVGFNVGAGYAPVLDCHTAHIACKFSELLQKIDKFIKSGDAAIVKMVPMCVEAFTEYPPLGRFAVR Porphyra_purpurea STTTGHLIYKCGGIDKRAIEKFKEAAEMGKSFKYAWVLDKLKAERERGITIDIALWKFETDKYNFTIIDAPGHRDFIKNMITGTSQADLAILVIASTREHALLAYTLGVKQMIVACNKMDNWSKERYEEVKVPTSGWTGENLKWYPCLLEALDPKRPVDKPLRLPLQDVGRVETGVIKGMVVTFAPSGLSTEVKSVMHAGPGDNVGFNIHAGYAPVLDCHTAHIACKFSELILKMDKMIKSGDAAMVKMVPMCVEAFTSYPPLGRFAVR Schizosaccharomyces_pombe STTTGHLIYKCGGIDKRTIEKFKEATELGKSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGTREHALRAYTLGVKQLIVAVNKMDGWSQARFEEIFVPVSGFQGDNMPWYKTLLEAIDPARPTDKPLRLPLQDVGRVETGVIKGMIVTFAPAGVTTEVKSVMHGLPGDNVGFNISAGYSPVLDCHTAHIACKFAELIEKIDKFVKSGDACIAKMVPMCVEAFTDYAPLGRFAVR Spironucleus_barkhanus STLTGHLIYKCGGIDQRTLDEYKRANEMGKSFKYAWVLDQLKDERERGITINIALWKFETKKFTVTIIDAPGHRDFIKNMITGTSQADVAILVIASTREHATLAHTLGIKTLIVCVNKMDNYSEARYKEIFIPTSGWTGDSIPWYPCLIDAIDPKRPTDKPLRLPIQDVGRVESGLLINMTVVFAPSTTTAEVKSVMHAGPGDNVGFNIQPGYSPVIDCHTAHIACKFDAFLQKLNTEASRGECIVVRMVPLSCESFNDYAALGRFAVR Stylonychia_lemnae STSTGHLIYKCGGIDKRTIEKFKEAAEMGKSFKYAWVLDKLKAERERGITIDIALWNFETAKSVFTIIDAPGHRDFIKNMITGTSQADAAILIIASTREHALLAFTMGVKQMIVAVNKMDNWDQGRFIEIFIPISGWHGDNMPWFSTLIDALDPKRPKDKPLRLPLQDVGRVETGLLKGMVLTFAPMNITTECKSVMHAEPGDNVGFTIQKGYAPVLDCHTAHIACKFDEIESKVDKFIKSGEAALVRMVPMCVEAFNQYPPLGRFAVR Tetrahymena_pyriformis STTTGHLIYKCGGIDKRVIEKFKESAEQGKSFKYAWVLDKLKAERERGITIDISLWKFETAKYHFTIIDAPGHRDFIKNMITGTSQADVAILMIASTREHALLAFTLGVKQMIVCLNKMDNFSEERYQEIFIPISGFNGDNMPWYPILVEALDPKRPVDKPLRLPLQDVGRVETGVIKGMSIQFAPNKVIAECKSVMHAVPGDNVGFNIQAGYTPVLDCHTAHIACKFETIHDKIDKFIKNGDAALVTLIALCVEVFQEYPPLGRYAVR Trichomonas_vaginalis STTTGHLIYKCGGLDKRKLAAIKEAEQLGKSFKYAFVMDSLKAERERGITIDISLWKFEGQKFSFTIIDAPGHRDFIKNMITGTSQADAAILVIDSTREHALLAFTLGIKQVIVAVNKMDNYNKARFDEIFVPISGWAGDNMPWYPYLLEALDPKRPFDKPLRLPLQDVGRVESGTMKGMIVNFAPSTVTAEVKSIMHALPGDNIGFNIHAGYQPVFDCHTAHIACKFDKLIQRIDEYIQKDDAAIVEVVPLVVESFQEYPPLGRFAIR Trypanosoma_brucei STATGHLIYKCGGIDKRTIEKFKEAADIGKSFKYAWVLDKLKAERERGITIDIALWKFESPKSVFTIIDAPGHRDFIKNMITGTSQADAAILIIASTREHALLAFTLGVKQMVVCCNKMDNYGQERYDEIFVPISGWQGDNMPWYPTLLEALDPVRPSDKPLRLPLQTCGRVETGVMKGDVVTFAPANVTTEVKSIMHATPGDNVGFNIGNGYAPVLDCHTSHIACKFAEIESKIDKSIKSGDAAIVRMVPMCVEVFNDYAPLGRFAVR oxymonad STTTRHLIYKCGGIDQRTLDRFKESEAMGKSFKYAWVLDKLKAERERGITIDIALWKFETGKYYFTIIDAPGHRDFIKNMITGTSQADGAILVVAATREHALLAYTLGVRQMIVCVNKMDNWAESRYNEVMIPISGFNGDNMPWYPVLFEALDPKRPSEKPLRLPIQDVGRVETGILTGQVITIAPCMITTEVKSVMHAVPGDNVGFNIQNGYTPVLDCHTSHIACKFKEIQSKIDKSIKSGDSAFVEMQPMVVETFVEYPPLGRFAVR ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M599] TITLE Eubacterial_Chaperonin_60; LINK TAXA = Taxa5; DIMENSIONS NCHAR=513; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] _Pseudomonas_aeruginosa AKEVKFGDSARKKMLVGVNVLADAVKATLGPKGRNVVLDKSFGAPTITKDGVSVAKEIELKDKFENMGAQLVKDVASRPTDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKATVAIVAQLKELAKPCADTKAIAQVGTISANSDESIGQIIAEAMEKVGKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFVNKPDTMAAELDSPLLLLVDKKISNIRE-MLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLEGLEHLGNAKRVVINKENTTIIDGAGIEARVLQIRKQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKAPVEDALHATRAAVEEGVVPGGGVALVRALQAIEGLK-QNVGIALLRRAVESPVRQIVANAGDEPSVVVDKVKQGSYGFNAATGVYGDMIEMGILDPAKVTRSALQAAASIGGLMITTEAMVAEIVE Arabidopsis_thaliana AKEIKFGVEARALMLKGVEDLADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKIKNVGASLVKQVANATNDVAGDGTTCATVLTRAIFAEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKSKARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIQDGKTLFNELEVVEGMKLDRGYTSPYFITNQKTQKCELDDPLILIHEKKISSINS-IVKVLELALKRQRPLLIVSEDVESDALATLILNKLRAGIKVCAIKAPGFGENRKANLQDLAALTGGEVITDELGMNLEKLSMLGTCKKVTVSKDDTVILDGAGIEERCEQIRSAIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGILPGGGVALLYAARELEKLPTQKIGVQIIQNALKTPVYTIASNAGVEGAVIVGKLLEQDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLLTTTEAVVVDLPK Bartonella_bacilliformis AKEVKFGRDARERLLRGVDILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELENKFENMGAQMLREVASKTNDIAGDGTTTATVLGQAIVQEGVKAVAASMNPMDLKRGIDAAVEAVVADLFKKAKKIQTSEEIAQVATISANGAEDIGKMIADAMEKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNSEKMMVDLDDPYILIHEKKLSNLQS-LLPVLEAVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAVLTSGQVISEDVGIKLENLEMLGRAKKVHVSKETTTIVDGAGINARVSQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKEKKDRVDDALNATRAAVEEGIVPGGGTPLLRAAKALS-IKGQEAGIGIIRRALQAPARQIAHNAGEEAAVIVGKVLENCFGYNTATAQFRDLISFGIVDPVKVVRSALQNAASIASLLITTEAMVAEVPK Bradyrhizobium_japonicum AKEVKFGVDARDRMLRGVDILHNAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADAAGDGTTTATVLAAAIVREGAKSVAAGMNPMDLKRGIDMAVEAVVADLVKNSKKVTSNEEIAQVGTISANGDAEIGKFISDAMKKVGNEGVITVEEAKSLETELEVVEGMQFDRGYISPYFVTNADKMRVEMDDAYVLINEKKLSQLNE-LLPLLEAVVQSGKPLVIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENLNMLGRAKKVMIDKENTTIVSGAGIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGILPGGGVALLRASEHLKGIRTQKTGVEIVRKALSYPARQIAINAGEDGSVIVGKILEKDYGYDSQTGEYGNLVSKGIIDPTKVVRVAIQNAASVAALLITTEAMVAEVPK Caulobacter_crescentus AKDVYFSSDARDKMLRGVNILANAVKVTLGPKGRNVVIEKSFAAPRTTKDGVSVAKEIELADKFENLGAQMIREVASKTNDKAGDGTTTATVLAQAIVQEGLKSVAAGMNPMDLKRGIDKAVAIAIEDIKTSSKKVTTNAEIAQVGTISANGDKEVG-EIAKAMDKVGNEGVITVEEAKTAETELDVVEGMQFDRGYLSPYFITNADKMEVQLEEPLILLSRKKLSSLQP--LPVLEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLRVAAVKAPGFGDRRKAMLEDIAILTGAQVVSEDIGIKLENLEMLGRAKKVSITKDDTTIVDGVGIEARIAQIKRQIEDTTSDYDKEKLQERLAKLAGGVAVIRVGGSTEVEVKEKKDRVDDALNATRAAADEGIVPGGGTALLKASKASA-VVGQTAGIAIVRRALQAPIRQIAENAGVEGSIVVGKILENDFGFNAQTEQYVDLVVDGVIDPAKVVRTALQNAASVAGLLITTEAAIVVSPQ Chlamydia_trachomatis AKNIKYNEEARKKIQKGVKTLAEAVKVTLGPKGRHVVIDKSFGSPQVTKDGVTVAKEVELADKHENMGAQMVKEVASKTADKAGDGTTTATVLAEAIYTEGLRNVTAGANPMDLKRGIDKAVKVVVDQIKKISKPVQHHKEIAQVATISANNDAEIGNLIAEAMEKVGKNGSITVEEAKGFETVLDVVEGMNFNRGYLSSYFATNPETQECVLEDALVLIYDKKISGIKD-FLPILQQVAESGRPLLIIAEDIEGEALATLVVNRIRGGFRVCAVKAPGFGDRRKAMLEDIAILTGGQLISEELGMKLENLAMLGKAKKVIVSKEDTTIVEGMGLEARCESIKKQIEDSSSDYDKEKLQERLAKLSGGVAVIRVGAATEIEMKEKKDRVDDAQHATIAAVEEGILPGGGTALIRCIPTLEAFLPEQIGARIVLKALSAPLKQIAANAGKEGAIIFQQVMSRSEGYDALRDAYTDMLEAGILDPAKVTRSALESAASVAGLLLTTEALIAEIPE Chromatium_vinosum AKDVKFGGDARVRMMEGVNILANAVKVTLGPKGRNVVLEKSFGAPTVTKDGVSVAKEIELKDKFENMGAQMVKEVASKTSDIAGDGTTTATVLAQAMVREGLKAVAAGMNPMDLKRGMDKAVEAATEELKKLSKPCPRPMAIAQVGTISANSDDSIGTIIAEAMEKVGKEGVITVEDGTSLQNELDVVEGMQFDRGYLSPYFINNQQSQSAELDAPYILLYDKKISNIRD-LLPVLEGVAKAGKPLLIIAEDVEGEALATLVVNTIRGIVKVCAVKAPGFGDRRKAMLQDIAILTGATVISEEVGLSLEKLTDLGTAKRVQVGKDETTIIDGSGIKARCEQIRAQVEETSSDYDREKLQERLAKLAGGVAVIKVGAATEIEMKEKKARVEDALHATRAAVEEGIVPGGGVALVRAIAAVKDLK-QDVGIAIARRAMEEPLRQIVANAGEEPSVILHKVAEGTFGYNAANGEYGDMVEMGILDPTKVTRSALQNSCSVAGLMITTEAMIADEPK Cucurbita_sp. AKDVKFGVEARGLMLKGVEDLADAVKVTMGPKGRTVVIEQSFGAPKVTKDGVTVAKSIEFKDKVKNVGASLVKQVANATNDVAGDGTTCATILTKAIFTEGCKSVASGMNAMDLRRGISMAVDSVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITISDGKTMDNELEVVEGMKLDRGYISPYFITNQKNQKCELDDPLIIIYEKKIS-SINAVVKVLELALKKQRPLLIVSEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKAGLQDLAVLTGGQVITEELGMNLEKLDMLGSCKKITISKDDTVILDGAGIEERCDQIRSGIEASTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKLPTQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTEVVVVELPK Dictyostelium_discoideum GKDIKFGAECRALMLRGVEQLAAAVEVTLGPKGRNVILDQPFGQPKITKDGVTVAKHIEFADRHINLGAQLVKGVASSQNDQSGDGTTTATILTRAIFAEGCKAVAAGMNPMDLWRGINSAVEKVVGELKTISRPISSTEEISQVATISANGDKVIGNLIANAMEKIGKEGVITVQDGKTLKDELEIIEGMKFDQGFISRYFINDAKEQKCEFDDPVILVVDGKISNVQQ-LVPILELVHSKHKKLVIIADNIEGDALSALIFNKMRG-LQVCAVKAPGFGDLKRVNLQDIGVISGAQVISEELGVRLEDITMLGSAKKITIDSDSTIILDGAGIQERVELIRESLTRTTSDYDKTQLETRLAKIGGGVAVIRVGGASEVEVGEKKDRITDALNATKAAVEEGIVPGGGTALLYSTLALKKIKMQTIGVKIVRDALLIPCKTIANNAGVEGSVVIGRLLSKRYGYNAQKGVYENMIQAGIIDPTKVVRTALIDAASVASLMTTTEAMVVEIKK Drosophila_melanogaster AKDVRFGPEVRAMMLQGVDVLADAVAVTMGPKGRNVIIEQSVGLAKITKDGVTVAKSIELKDKFQNIGAKLVQDLANNTNEEAGDGTTTATFLARAIAKEGFEKISKGGNPVEIRRGVMLAVETVKDNLKTMSRPVSTPEEIAQVATISANGDREIGNSVSEAMKKVGRDGVITVKDGKTLTDELEVIEGMRFDRGYISPYFINSSKGAKVEFQDALLLLSEKKISSVAEHHSPLWRLASRRRKPLVIIAEDIDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKSTLTDMAT-SGGIVFGDDSLVKLEDVSDLGQVGEVVITKDDTLLLKGKGVLRRANQIRTKIEDTTSEYEKEKLQERLARLASGVA-LRVGGSSEVEVNEKKDRVHDALNATRAAVEEGIVPGGGRPLLRCIEKLEGVETQKLGVEIVRRALRMPCMTIAKNAGVDGAMVVAKVENQAYGYDAKG-EYGNLIEKGIIDPTKVVRTAITDASGVASLLTTAEAVVTEIPK Eschericia_coli AKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIRE-MLPVLEAVAKAGKPLLIIAEDVEGEALATAVVNTIRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKLEDLGQAKRVVINKDTTTIIDGVGIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKL--ADLQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPK Euglena_gracilis GKDILFGVDARVKMLAGVNRLSQAVSVTLGPKGRNVVIEQPFGAPKITKDGVTVAKAIEFKDSFENLGAQLVRQVANTTNEIAGDGTTTSTVLANTIFSEGYKAVTQGTSPVDMKRGIDRAVEVVLQSLTEQSKTIVSKEEVTQVATISANGDVEIGQLIGHAMEKVGKAGVITVSDGKTLDTELEVVEGMSLDRGYISPYFVTNAKTQKVEIEDAFILLCQKKVSTIQQ-ILPVLEHIAKANRPLVIIADDVDSEALATLIINKINGKLKVCAVKAPGFGDNKTNMLHDVAIFTGGEVYNEELGMNLEQHRILGFAKKVSVGKDQTIILNGAGVEERKELIQGMLGKTDSSYEKEKLNERLAKLSGGVAVIKVGGASDVEVGEKKDRVTDALNATRAAVSEGIVPGGGAALLYASSALAELAAQKTGVRIVMSAIKLPAITIVKNAGGEGAVVIHQLLAEKQGYDAQQGKYVNMFEAGIIDPAKVVKTALVDAASVAGLMITTEAAITDIPA Homo_sapiens AKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDKEIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSIQS-IVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEELTLNLEDPHDLGKVGEVIVTKDDAMLLKGKGIEKRIQEIIEQLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEGIVLGGGCALLRCIPALDSLTPQKIGIEIIKRTLKIPAMTIAKNAGVEGSLIVEKIMQSSVGYDAMAGDFVNMVEKGIIDPTKVVRTALLDAAGVASLLTTAEVVVTEIPK Neisseria_gonorrhoea AKDVQFGNEVRQKMVNGVNILANAVRVTLGPKGRNVVVDRAFGGPHITKDGVTVAKEIELKDKFENMGAQMVKEVASKTNDVAGDGTTTATVLAQSIVAEGIKYVTAGMNPTDLKRGIDKAVAALVEELKNIAKPCDTSKEIAQVGSISANSDEQVGAIIAEAMEKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINDAEKQIAGLDNPFVLLFDKKISNIRD-LLPVLEQVAKASRPLLIIAEDVEGEALATLVVNNIRGVLKTVAVKAPGFGDRRKAMLQDIAILTGGVVISEEVGLSLEKLDDLGQAKRIEIGKENTTVIDGFGIEARVAEIRQQIETATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALLRARAALENLH-QEAGVQIVLRAVESPVRQIVANAGGEPSVVVNKVLEGKYGYNAGSGEYGDMIGMGVHDPAKVTRSALQHAASIAGLMLTTDCMIAEIPE Plasmodium_falciparum SKDIRFGSDARTAMLTGCNKLADAVSVTLGPKGRNVIIEQSFGSPKITKDGVTVAKSIEFNNKLANLGAQMVKQVAANTNGKAGDGTTTATILARSIFQQGCKAVDSGMNPMDLLRGINKGVEKVLEYLNSIKKDVTTTEEIFNVASISN-GDKNIGQLIADTMKKVGKEGTITVTEGKTLQHELEIVEGIKFDRGYISPYFINN--SQKVELDKPYILIHEKKISTVKS-LLPVLEHVLQNQSSLLVIAEDVDSDALATLIVNKLRLGLKICAVKAPGFGEHRKALIHDIAVMTGAKVITEETGLKLDDVSYLGKAKSINVTKDSTLIMEGEGINERCESIRNAIKMNTSDYEKEKLQERLAKITGGVALIKVGGISEVEVNEIKDRIQDALCATKAAVEEGIVPGGGSALLFASKELDSVQTQRVGVNIIKDACKAPIKQIAENAGHEGSVVAGNILKDKIGFNAQEGKYVDMIESGIIDPTKVVKTAISDAASIASLMTTTEVAIVDFKD Rhizobium_meliloti AKEVKFGRSGREKMLRGVDILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELEDKFENMGAQMVREVASKTNDIAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDLAVAEVVKDLLAKAKKINTSDEVAQVGTISANGEKQIGLDIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAFILLHEKKLSNLQA-MLPVLEAVVQTGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLESLDMLGRAKKVSITKENTTIVDGAGIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRIDDALNATRAAVQEGIVPGGGVALLRSSVKIT-VKGQDAGVNIVRRALQSPARQIVENAGDEASIVVGKILEKNFGYNAQTGEYGDMIAMGIIDPVKVVRTALQDAASVASLLITTEAMIAELPK Rhodobacter_sphaeroides AKDVKFDTDARDRMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVKEVASRTNDEAGDGTTTATVLAQAIIKEGLKAVAAGMNPMDLKRGIDLATSKVVEAIKAAARPVNDSHEVAQVGTISANGEAQIGRFIADAMQKVGNEGVITVEENKGLETEVEVVEGMQFDRGYLSPYFVTNADKMTAELDDVYILLHEKKLSSLQP-MVPLLEAVIQSQKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENIDMLGRAKKISINKDNTTIVDGNGIDARVAQIRNQIEETSSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNATRAAVQEGIVVGGGVALIQGGKALDGLTGQNAGITIVRRALEAPLRQIAQNAGVDGSVVAGKVRESNFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVASLLITTEAMIADKPE Saccharomyces_cerevisiae HKELKFGVEGRASLLKGVETLAEAVAATLGPKGRNVLIEQPFGPPKITKDGVTVAKSIVLKDKFENMGAKLLQEVASKTNEAAGDGTTSATVLGRAIFTESVKNVAAGCNPMDLRRGSQVAVEKVIEFLSANKKEITTSEEIAQVATISANGDSHVGKLLASAMEKVGKEGVITIREGRTLEDELEVTEGMRFDRGFISPYFITDPKSSKVEFEKPLLLLSEKKISSIQD-ILPALEISNQSRRPLLIIAEDVDGEALAACILNKLRGQVKVCAVKAPGFGDNRKNTIGDIAVLTGGTVFTEELDLKPEQIENLGSCDSITVTKEDTVILNGSGIQERIEQIKGSIDITTTSYEKEKLQERLAKLSGGVAVIRVGGASEVEVGEKKDRYDDALNATRAAVEEGILPGGGTALVKASRVLDEVVVQKLGVDIIRKAITRPAKQIIENAGEEGSVIIGKLIDEYKGYDASKSEYTDMLATGIIDPFKVVRSGLVDASGVASLLATTEVAIVDAPE Schizosaccharomyces_pombe AKDLKFGVDARASLLTGVDTLARAVSVTLGPKGRNVLIDQPFGSPKITKDGVTVARSVSLKDKFENLGARLVQDVASKTNEVAGDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQLAVDNVVEFLQANKRDITTSEEISQVATISANGDTHIGELLAKAMERVGKEGVITVKEGRTISDELEVTEGMKFDRGYISPYFITDVKSQKVEFENPLILLSEKKVSAVQD-ILPSLELAAQQRRPLVIIAEDVDGEALAACILNKLRGQLQVVAIKAPGFGDNRRNMLGDLAVLTDSAVFNDEIDVSIEKPHHLGSCGSVTVTKEDTIIMKGAGVNDRCEQIRGVMADPNLEYEKEKLQERLAKLSGGIAVIKVGGSSEVEVNEKKDRIVDALNAVKAAVSEGVLPGAGTSFVKASLRLGDIPTQKLGVEIVRKAITRPAQTILENAGLEGNLIVGKLKELYIGYDIAKDRFVDLNEIGVLDPLKVVRTGLVDASGVASLMGTTECAIVDAPE Thermus_thermophilus AKILVFDEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVEDRKAIEEVATISAN-DPEVGKLIADAMEKVGKEGIITVEESKSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRE-LLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENLSMLGRAERVRITKDETTIVGGKGIEARINGIKKELETTDSEYAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEGIVPGGGVTLLRAISAVEELIKEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKPE Treponema_pallidum ANELLFNEEARKKLLSGVEQISSAVKVTLGPKGRNVLLEKGYGAPTVTKDGVSVAKEVELEDPFENMGAQLLKEVATKTNDVAGDGTTTATVLAYSMVREGLKAVAAGMTPLELKRGMDKAVAIAVDDIKQNSKGIKSNEEVAHVASVSANNDKEIGRILASAIEKVGNDGVIDVDEAQTMETVTEFVEGMQFDRGYISSYFVTDRDRMETVYENPYILIYDKSISTMKD-LLPLLEKIAQTGRPLLIIAEDVEGEALATLVVNSLRGTLKTCAVKAPGFGDRRKEMLEDIAILSGGQVISEDLGLKLESIALLGQAKSVKVDKENTTIIDGSGIKDRIEQIKKQIEASTSDYDSEKLKERLAKLSGGVAVIKIGAVTEVEMKEKKHRVEDALNATRAAIEEGIVAGGGLALIQAAAALEKADLEAVGFKIVRRALEEPIRQISENAGIDGAVVAEKAK-EKIGFDASKMEWVDMIKVGIIDPAKVTRSALQNAASVSGLLLTTECAIAAIGQ Trypanosoma_brucei AKDIRFGTEARQSMLKGVQRAVEAVATTLGPKGRNVIIEQSYGAPKITKDGVTVAKSIEFKDPFENMGAQLVRQVCNKTNDLAGDGTTTSAVLVASIFSEGIKSIATGTNPIDMKRGMDRAVEVILKNIESQSRTVTNTENVVQVATISANGDVELGKLIGEAMEKVGKDGVITTQDGKTLTTELEVVEGMSVDRGYISPYFVTDAKTQKAELEDAFVLVSAKKLNNIHT-ILPVLNHVVRSGRPLLIIADDVESEALTTMIFNKLQGKLKIACVKAPGFGDNKAAMLQDIAIFSGACVVGEESGVELDAASILGSVKKATITKDDTVLLNGGGMKERVDLVRGLIERETSDYNREKLQERLAKLSGGVAVIRVGGASEVEVNEKKDRITDALCSTRAAVQEGIVPGGGPALLRASKALDGLLQQRTGVQIIRNAVRLPAHRIVANAGREGAVVVEKVLENTVGYDAQLDRYVNMFEAGIIDPARVVRVALTDAASVASLMMTAEAAVVDLPK ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M602] TITLE 'Eukaryotic HMG-CoA'; LINK TAXA = Taxa1; DIMENSIONS NCHAR=251; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . ] Agrotis_ipsilon ENVIGYVGVPVGYAGPLVVDGKPYMIPMATTEGALVASTNRGAKAIVTSVVEDVGMTRAPAICRQWIAVIKEAFDSTSRFLQEIHIGVYLRFRATTGDAMGMNMVSKGAENALKLLMEVISLSGNYRVVCETTITSDSLRTDAKTLARCNKISALAGSINAANMVTAIYIATGQDPAQNVTSTNMELYVTCTMPLEVGTVGGGILTGQGACLDILGVSARLICATVLAGELSLMAALVNSDLVKSHMRHNR Aspergillus_terreus_1 ENVVGYLPLPLGVAGPMVIDGQALFIPMATTEGVLVASASRGCKAIATTMLKGDGMTRGPCLAQRWVEVLAAAFNATSRFLQTLTVAQYIRFRTTTGDAMGMNMISKGVEKALEAMMHTVTLSGNFSVIAEATIPAETVRTDVDALVELNTASAMAGSLFASNLVQAVFLATGQDPAQNVEITTMKLHIAVSMPMEVGTIGGGILEAQGAMLDLLGVARRIVAAAVLAGELSTCAALAAGHLVNAHMQHNR Blattella_germanica ENVIGYMPVPVGVAGPLNLDGRLVHVPLATTEGCLVASTNRGMRALVTSRIVADGMTRGPVVAMLWMEQIKKNFDSTSRFLSKIHIRVFIRFIATTGDAMGMNMLSKGTEVALAYVMEILSLSGNFSVVCEAIVPADIIKTSVQALMDVNITSAVAGSIFAANIVTAIFIATGQDPAQNVGMTLMELYVSCTMPIEIGTIGGGVLPPQAACLDMLGVANTIVCGTVLAGELSLMSALAAGHLVKSHMRHNR Candida_utilis ENVIGYMPLPVGVAGPLIIDGKPYHIPMATTEGCLVASAMRGCKAIVTTVLTKDGMTRGPCVCKLWLEEMKKAFNSTSRFLQHLQTALFIRFRTVTGDAMGMNMISKGVEYALKQMMMVVSVSGNYSVVAEASIPKDAVVSSVKAVVDVNVNSAMAGSVFAANMVTAVYLALGQDPAQNVEITLMTLKVSVSMPIEVGTIGGGILDPQGSMLELLGVARQIVASIVLSGELSLVSALAAGHLVQSHMQHNR Cricetulus_griseus ENVIGYMPIPVGVAGPLCLDGKEYQVPMATTEGCLVASTNRGCRAIASSRVLADGMTRGPVVVKAWLAVIKDAFDSTSRFLQKLHVTMYIRFQSKTGDAMGMNMISKGTEKALLKLMQILAVSGNYTVVCEAVIPAKVVRTTTEAMIDVNINSAMAGSIYAANIVTAIYIACGQDAAQNVGITLMELYISCTMPIEIGTVGGGNLLPQQACLQMLGVARQIVCGTVMAGELSLMAALAAGHLVRSHMVHNR Dendroctonus_jeffreyi ENVIGYMPIPVGYAGPLLLDGRELYIPMATTEGCLVASTNRGCRALVTSSVVADGMTRGPVVAMQWIKKIKEQFDSSSRFLQRLTLKIFIRFIATTGDAMGMNMLSKGTEYSLKLVMEILSLSGNFSVVCEAIVPAKIISTNVHALVDVNNISAVAGSIFAANIVTAIFLATGQDPAQNVSMTLMELYISCTMPIEIGTIGGGILPAQSACLDILGVACQIVCGTVLAGELSLMSALTAGHLVKSHLRHNR Drosophila_melanogaster ENVLGYVPIPVGYAGPLLLDGETYYVPMATTEGALVASTNRGCKALVRSVVEDVGMTRAPCVAKSWIRVVKTEFDSTSRFLKDCHIAMYIRFVAITGDAMGMNMVSKGAEMALRRIMQIISLSGNFRVVTECTISAATLRTDAKTLVECNKLSAMAGSINAANMVTAVFLATGQDPAQNVTSTAMELYMTCTMPLEVGTVGGGGLPGQSACLEMLGVAKKIVCATVMAGELSLMAALVNSDLVKSHMRHNR Gibberella_fujikuroi ENVIGYMPLPVGVAGPLVIDGQSYFIPMATTEGVLVASASRGCKAIAITVLTADGMTRGPCVAKLWLDMMKKAFNSTSRFLQSMKTALYIRFKTTTGDAMGMNMISKGVEHALSVMMQIISVSGNYGVVAEAIIPGEVVRSDVDSLVELNVASAMAGSVFAANIVAAIFLATGQDPAQVVEITIMKLQISVSMPLEVGTLGGGILEPQGAMLDILGVARRIIGAAVLAGELSLCSALAAGHLVRAHMQHNR Homo_sapiens ENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIASSRVLADGMTRGPVVVKAWLAVIKEAFDSTSRFLQKLHTSIYIRFQSRSGDAMGMNMISKGTEKALSKLMQILAVSGNYSVVCEAVIPAKVVRTTTEAMIEVNINSAMAGSIYAANIVTAIYIACGQDAAQNVGITLMELYISCTMPIEIGTVGGGNLLPQQACLQMLGVARQIVCGTVMAGELSLMAALAAGHLVKSHMIHNR Ips_paraconfusus ENVIGYMPIPVGYAGPLVLDGKEIYVPMATTEGCLVASTNRGCRALVTSRIVADGMTRGPVVAMQWIDGIKEQFDSSSRFLQRVTMKIFIRFVATTGDAMGMNMLSKGTEYSLKFVMEILSLSGNFSVVCEAIVPAKIVATNVHALVDVNNSSAVAGSIFAANIVTAIFLATGQDPAQNVGMTLMELYISCTMPIEIGTIGGGILPPQGTCLEMLGVASQIVGATVLAGELSLMSALAAGHLVRSHLRHNR Oryctolagus_cuniculus ENVIGYMPIPVGVVGPLCLDGKEFQVPMATTEGCLVASTNRGCRAIASSRVLADGMTRGPVVVKAWLAVIKEAFDSTSRFLQKLHISMYIRFQSRTGDAMGMNMISKGTEKALSKLMQILAVSGNYTVVCEAVIPAKVVRTTTEAMIDVNINSAMAGSIYAANYVTAIYIACGQDAAQNVGITLMELYISCTMPIEIGTVGGGNLLPQQACLQMLGVARQIVCGTVMAGELSLMAALAAGHLVKSHMIHNR Phycomyces_blakesleeanus ENVIGYMPIPVGVAGPMNIDGDLIHIPMATTEGCLVASTARGCKAIASTIVIADGMTRGPCVCKLWIDIVTNAFNSTSRFLRKLKIALFIRFSTTTGDAMGMNMISKGCEKALSIIMQIISLSGNYSVVTEAVIPGAIVETTVAALVELNISSAMAGSVFAANILTAIYLATGQDPAQNVEITLMKLHISCTMPIEVGTIGGGILPPQQSMLDMLGVAQRIICAAVMAGELSLCAALAAGHLVKAHMAHNR Rattus_norvegicus ENVIGYMPIPVGVAGPLCLDGKEYQVPMATTEGCLVASTNRGCRAIASSRVLADGMSRGPVVVKSWLAVVKEAFDSTSRFLQKLHVTLYIRLQSKTGDAMGMNMISKGTEKALLKLLQILAVSGNYTVVCEAVIPAKVVRTTTEAMVDVNINSAMAGSIYAANIVTAIYIACGQDAAQNVGITLMELYISCTMPIEIGTVGGGNLLPQQACLQMLGVARQIVCGTVMAGELSLMAALAAGHLVRSHMVHNR Saccharomyces_cerervisiae_1 ENVIGYMPIPVGVIGPLIIDGTSYHIPMATTEGCLVASAMRGCKAIATTVLTKDGMTRGPVVCKIWLNSIKKAFNSTSRFLQHIQTCLFMRFRTTTGDAMGMNMISKGVEYSLKQMMEVVSVSGNYSVVAEATIPGDVVKSDVSALVELNISSAMAGSVFAANLVTALFLALGQDPAQNVEITLMKLRISVSMPIEVGTIGGGVLEPQGAMLDLLGVARQIIACAVLAGELSLCSALAAGHLVQSHMTHNR Schizosaccharomyces_pombe_1 ENVIGYMPLPLGVAGPLIIDGKPFYIPMATTEGALVASTMRGCKAIAVTVLTRDQMSRGPCVAKIWLEVMKKAFNSTSRFLQHIKTALFIRFCTSTGDAMGMNMISKGVEHALVVMMQVISVSGNYSVIAEAIIPGDAVKTTVEDLVKLNVDSAMAGSVFAANIVTAVYLATGQDPAQNVEITLMDLQLSVSMPIEVGTIGGGVLEPQGAMLDLLGVSRQVVAAAVMAGELSLCSALASGHLVKSHIGLNR Strongylocentrotus_purpuratus ENVIGYMPVPVGVAGPLLLDGQEFQVPMATTEGCLVASTNRGCRALIHSVLIGDGMTRGPLVIKQWLAAIKERFESTSRFLKSIQTALFLRFKALTGDAMGMNMISKGTEQALHALIEIMSLSGNYSVVCEATVPAHIVQTSASALVDLNIHSAMAGSIFAANIVTAIYIATGQDAAQNIAMTLMELYLSCTMPIELGTVGGGVLPPQSACLQMMDVASQIVCATVMAGELSLMSALAAGHLVKSHMKHNR Xenopus_laevis ENVIGYMPIPVGVAGPLLLNNKEYQVPMATTEGCLVASTNRGCRAIAKSRVLADGMTRGPVVVKAWLKVIKDAFDSTSRFLGRLQNCVYIRFQSKTGDAMGMNMISKVTEQALARLLHVLAVSGNYSVVCEAIIPAKVVRSSTEALVEVNINSAMAGSIYAANIVTAIYIACGQDAAQNVGITIMELYISCTMPIEIGTVGGGNLAPQQACLQMLGVACQIVCSTVMAGELSLMAALAAGHLVKSHMVHNR ; END; BEGIN TREES; TITLE Tb6546; LINK TAXA = Taxa13; TRANSLATE 1 Cyanophora_paradoxa, 2 Phytophthora_capcisi, 3 Blastocystis_hominis, 4 Spironucleus_barkhanus, 5 Hexamita_inflata, 6 Giardia_lamblia, 7 oxymonad, 8 Dinenympha_exilis, 9 Trichomonas_vaginalis, 10 Stylonychia_lemnae, 11 Tetrahymena_pyriformis, 12 Cryptosporidium_parvum, 13 Plasmodium_falciparum, 14 Porphyra_purpurea, 15 Entamoeba_histolytica, 16 Dictyostelium_discoideum, 17 Physarum_polycephalum, 18 Naegleria_andersoni, 19 Acrasis_rosea, 20 Trypanosoma_brucei, 21 Euglena_gracilis, 22 Nicotiana_tabacum, 23 Arabidopsis_thaliana, 24 Podospora_anserina, 25 Schizosaccharomyces_pombe, 26 Homo_sapiens, 27 Caenorhabditis_elegans; TREE EukEF = [&R] (26,27,((1,((2,(22,23)),((14,(16,17)),((((7,8),(12,13)),((11,15),(19,(3,(9,(18,(5,(4,6)))))))),(21,(10,20)))))),(24,25))); END; BEGIN TREES; TITLE Tb6543; LINK TAXA = Taxa2; TRANSLATE 1 Methanosarcina_mazei, 2 Methanococcus_jannaschii, 3 Methanobacterium_thermoautotrophicum, 4 Pyrococcus_abyssii, 5 Pyrococcus_horikoshii, 6 Pyrococcus_furiosus, 7 Sulfolobus_solfataricus, 8 Pyrobaculum_aerophilum, 9 Aeropyrum_pernix, 10 Haloferax_volcanii, 11 Halobacterium_species; TREE ArchaeHMG = [&R] (11,10,(1,((3,2),((4,(6,5)),(7,(9,8)))))); END; BEGIN TREES; TITLE Tb6547; LINK TAXA = Taxa1; TRANSLATE 1 Phycomyces_blakesleeanus, 2 Aspergillus_terreus_1, 3 Candida_utilis, 4 Saccharomyces_cerervisiae_1, 5 Schizosaccharomyces_pombe_1, 6 Gibberella_fujikuroi, 7 Strongylocentrotus_purpuratus, 8 Blattella_germanica, 9 Dendroctonus_jeffreyi, 10 Ips_paraconfusus, 11 Xenopus_laevis, 12 Oryctolagus_cuniculus, 13 Rattus_norvegicus, 14 Cricetulus_griseus, 15 Agrotis_ipsilon, 16 Drosophila_melanogaster, 17 Homo_sapiens; TREE eukHMG = [&R] (12,17,((11,(7,((8,(10,9)),((16,15),(1,((4,3),(6,2))))))),(14,13))); END; BEGIN TREES; TITLE Tb6551; LINK TAXA = Taxa12; TRANSLATE 1 Trypanosoma_brucei, 2 Dictyostelium_discoideum, 3 Plamodium_falciparum, 4 Trichomonas_vaginalis, 5 Giardia_lamblia, 6 Oxytricha_trifallax, 7 Euplotes_octocarinatus, 8 Yarrowia_lipolytica, 9 Candida_albicans, 10 Saccharomyces_cerevisiae, 11 Schizosaccharomyces_pombe, 12 Neurospora_crassa, 13 Nicotiana_tabacum, 14 Arabidopsis_thaliana, 15 Caenorhabditis_elegans, 16 Drosophila_melanogaster, 17 Homo_sapiens; TREE eRF3 = [&R] (16,17,(15,(((8,(9,10)),(11,12)),((2,((3,(6,7)),(13,14))),(4,(1,5)))))); END; BEGIN TREES; TITLE Tb6550; LINK TAXA = Taxa9; TRANSLATE 1 Pythium_ultimum, 2 Cercomonas_sp., 3 Cyanophora_paradoxa, 4 Guillardia_theta, 5 Plaesiobystra_sp., 6 Macropharyngomonas_halophila, 7 Soginia_sp., 8 Reclinomonas_americana, 9 Jakoba_libera, 10 Malawimonas_jakobiformis, 11 Jakoba_incarcerata, 12 Trimastix_marina, 13 Trimastix_pyriformis_sulcatus, 14 Trimastix_pyriformis_pyriformis, 15 Chlorarachnion_sp., 16 Pisum_sativum, 17 Volvox_carteri, 18 Stylonychia_lemnae, 19 Trypanosoma_brucei, 20 Naegleria_gruberi, 21 Euglena_gracilis, 22 Toxoplasma_gondii; TREE beta_tubulin = [&R] (22,(3,18),(((11,((((9,8),(10,(12,(13,14)))),(4,19)),((21,7),(5,(6,20))))),(17,16)),(2,(1,15)))); END; BEGIN TREES; TITLE Tb6545; LINK TAXA = Taxa5; TRANSLATE 1 Eschericia_coli, 2 Neisseria_gonorrhoea, 3 Cucurbita_sp., 4 Chlamydia_trachomatis, 5 Chromatium_vinosum, 6 _Pseudomonas_aeruginosa, 7 Treponema_pallidum, 8 Thermus_thermophilus, 9 Rhodobacter_sphaeroides, 10 Bartonella_bacilliformis, 11 Bradyrhizobium_japonicum, 12 Rhizobium_meliloti, 13 Caulobacter_crescentus, 14 Plasmodium_falciparum, 15 Trypanosoma_brucei, 16 Euglena_gracilis, 17 Dictyostelium_discoideum, 18 Drosophila_melanogaster, 19 Homo_sapiens, 20 Saccharomyces_cerevisiae, 21 Schizosaccharomyces_pombe, 22 Arabidopsis_thaliana; TREE cpn60 = [&R] (3,22,(17,(14,(((18,19),(21,20)),((((11,(10,12)),(13,9)),((4,(7,8)),(2,(5,(1,6))))),(15,16)))))); END; BEGIN TREES; TITLE Tb6548; LINK TAXA = Taxa3; TRANSLATE 1 Giardia_lamblia, 2 Trypanosoma_brucei, 3 Leishmania_major, 4 Schizosaccharomyces_pombe, 5 Saccharomyces_cerevisiae, 6 Candida_albicans, 7 Arabidopsis_thaliana, 8 Oryza_sativa, 9 Dictyostelium_discoideum, 10 Caenorhabditis_elegans, 11 Drosophila_melanogaster, 12 Mus_musculus, 13 Homo_sapiens; TREE HBS1 = [&R] (12,13,(11,(10,(9,((4,(5,6)),((1,(2,3)),(7,8))))))); END; BEGIN TREES; TITLE Tb6552; LINK TAXA = Taxa7; TRANSLATE 1 Artemisia_annua_1, 2 Raphanus_sativus_1, 3 Arabidopsis_thaliana_1, 4 Morus_alba, 5 Gossypium_hirsutum_1, 6 Tagetes_erecta_1, 7 Camptotheca_acuminata_1, 8 Nicotiana_tabacum, 9 Nicotiana_sylvestris, 10 Capsicum_annuum, 11 Solanum_tuberosum_1, 12 Lycopersicon_esculentum_1, 13 Catharanthus_roseus, 14 Hevea_brasiliensis, 15 Cucumis_melo; TREE plantHMG = [&R] (15,(3,2),(5,(7,4,(6,1),(14,13),(8,(9,(10,(12,11))))))); END; BEGIN TREES; TITLE Tb6554; LINK TAXA = Taxa6; TRANSLATE 1 Ajellomyces_capsulatus, 2 Podospora_anserina, 3 Dictyostelium_discoideum, 4 Triticum_aestivum, 5 Zea_mays, 6 Lycopersic_esculentum, 7 Porphyra_yezoensis, 8 Guillardia_theta, 9 Oryza_sativa, 10 Arabidopsis_thaliana_3, 11 Arabidopsis_thaliana_2, 12 Arabidopsis_thaliana_1, 13 Ipomoea_nil, 14 Leishmania_infantum, 15 Leishmania_amazonensis, 16 Trypanosoma_brucei, 17 Trypanosoma_cruzi, 18 Caenorhabditis_elegans, 19 Brugia_pahangi, 20 Danio_rerio, 21 Cricetulus_griseus, 22 Anopheles_albimanus, 23 Drosophila_melanogaster, 24 Salmo_salar, 25 Rattus_norvegicus, 26 Homo_sapiens_2, 27 Homo_sapiens_1, 28 Neurospora_crassa, 29 Candida_tropicalis, 30 Candida_albicans, 31 Schizosaccharomyces_pombe, 32 Saccharomyces_cerevisiae, 33 Babesia_bovis, 34 Plasmodium_falciparum, 35 Tetrahymena_thermophila, 36 Eimeria_tennela, 37 Theileria_parva; TREE hsp90 = [&R] (33,37,((35,(((14,15),(17,16)),(((31,((1,(28,2)),(32,(29,30)))),((18,19),((22,23),((27,21),((20,24),(26,25)))))),(3,(((13,5),((4,9),(6,(11,(10,12))))),(8,7)))))),(36,34))); END; BEGIN TREES; TITLE Tb6544; LINK TAXA = Taxa8; TRANSLATE 1 Thermoplasma_volcanium, 2 Thermoplasma_acidophilum, 3 Pseudomonas_mevalonii, 4 Archeoglobus_profundus, 5 Archeoglobus_fulgidis, 6 Ferroglobus_placidus, 7 Archeoglobus_veneficus, 8 Enterococcus_faecium, 9 Enterococcus_faecalis, 10 Staphylococcus_haemolyticus, 11 Staphylococcus_aureus, 12 Staphylococcus_epidermidis, 13 Streptococcus_pyogenes, 14 Streptococcus_pneumoniae; TREE BactHMG = [&R] (13,14,((3,((2,1),(4,(7,(6,5))))),((11,(12,10)),(9,8)))); END; BEGIN TREES; TITLE Tb6553; LINK TAXA = Taxa10; TRANSLATE 1 Spinacia_oleracea, 2 Zea_mays, 3 Sorghum_bicolor, 4 Flaveria_bidentis, 5 Echinococcus_granulosus, 6 Mycobacterium_leprae, 7 Mycobacterium_tuberculosis, 8 Sus_scrofa, 9 Homo_sapiens, 10 Trichomonas_vaginalis, 11 Medicago_sativa, 12 Arabidopsis_thaliana, 13 Mesembryanthemum_crystallinum, 14 Thermus_flavus; TREE mdh = [&R] (10,Giardia_lamblia,((14,(((2,3),(4,1)),(7,6))),(5,((13,((11,12))),(9,8))))); END; BEGIN TREES; TITLE Tb6542; LINK TAXA = Taxa11; TRANSLATE 1 Thermoplasma_acidophilum, 2 Halobacterium_marismortui, 3 Halobacterium_halobium, 4 Methanococcus_kandleri, 5 Methanococcus_jannaschii, 6 Archeoglobus_fulgidis, 7 Pyrococcus_woesii, 8 Pyrococcus_horikoshii, 9 Thermococcus_celer, 10 Pyrobaculum_aerophilum, 11 Aeropyrum_pernix, 12 Desulfurococcus_mobilis, 13 Sulfolobus_solfataricus; TREE 'Archaebacterial EF-1alpha' = [&R] (12,13,(11,(10,(1,((6,((2,3),(4,5))),(9,(7,8))))))); END; BEGIN TREES; TITLE Tb6549; LINK TAXA = Taxa4; TRANSLATE 1 Bradyrhizobium_japonicum, 2 Caulobacter_crescentus, 3 Agrobacterium_tumefaciens, 4 Ehrlichia_sennetsu, 5 Ehrlichia_sp., 6 Rhodobacter_capsulatus, 7 Rickettsia_prowazekii, 8 Chlamydia_pneumoniae, 9 Borrelia_burgdorferi, 10 Leptospira_interrogans, 11 Haemophilus_ducreyi, 12 Legionella_pneumophila, 13 Francisella_tularensis, 14 Trichomonas_vaginalis, 15 Schizosaccharomyces_pombe, 16 Saccharomyces_cerevisiae, 17 Mus_musculus, 18 Caenorhabditis_elegans, 19 Eimeria_tennela, 20 Phaseolus_vulgaris, 21 Pisum_sativum, 22 Leishmania_major, 23 Trypanosoma_cruzi; TREE hsp70 = [&R] (22,23,(14,((19,((15,16),(17,18))),((5,(((8,(9,10)),(11,(13,12))),(4,(7,(2,(6,(1,3))))))),(21,20))))); END;