#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 10, 2024; 23:41 GMT TreeBASE (cc) 1994-2008 Study reference: Niessen L., Schmidt H., & Vogel R. 2004. The use of tri5 gene sequences for PCR detection and taxonomy of trichothecene-producing species in the Fusarium section Sporotrichiella. International Journal of Food Microbiology, 95(3): 305-319. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1027] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=13; TAXLABELS Fusarium_kyushuense_BBA70812 Fusarium_kyushuense_BBA70813 Fusarium_langsethiae_IBT9956 Fusarium_langsethiae_IBT9990 Fusarium_poae_BBA70744 Fusarium_poae_IBT9926 Fusarium_poae_U15658 Fusarium_pseudograminearum Fusarium_sporotrichioides_IBT1906 Fusarium_sporotrichioides_IBT8804 Fusarium_sporotrichioides_IBT9950 Fusarium_sporotrichioides_IBT9969 Fusarium_sporotrichioides_M27246 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M620] TITLE tri5align; LINK TAXA = Taxa1; DIMENSIONS NCHAR=622; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Fusarium_kyushuense_BBA70812 CGCCAACAGCAGCTGCTCAAGGTAAACCCCAAACGACTACAGGCTTCCCTCCAAACAATTGTTGGCATGGTCGTATACAGTTGGGCAAAAGTCTCCAAAGAGTGTATGGCGGATCTCTCCATTCATTACACCTACACGCTCGTTTTGGATGACAGCAGCGATGATCCGTACCCAGCCATGATGAACTACTTCAACGATCTTCAAGCTGGGCGAGAACAGGCCCATCCGTGGTGGGCGCTTGTTAATGAGCACTTCCCTAATGTCCTCCGTCATTTCGGTCCCTTCTGCTCGTTGAATCTTATCCGCAGCACTCTCGATTGTAAGTA-----CCCTGACTATATCAATTCACCGCCTCAGAAAA----CTGACCGCGATCGAATCACAGTTTTTGAAGGATGCTGGATCGAGCAGTACAACTTTGGAGGATTTCCAGGATCCCATGATTATCCTCAGTTTCTTCGACGCATGAACGGCTTAGGCCATTGTGTCGGGGCTTCTTTGTGGCCCAAGGAGCAGTTTGATGAGCGAAGTCTGTTTCTTGAAATTACATCAGCCATTGCCCAGATGGAGAACTGGATGGTTTGGGTCAATGATCTTATGTCGTTCTACAAGGAATTCG Fusarium_kyushuense_BBA70813 CGCCAACAGCAGCTGCTCAAGGTAAACCCCAAACGACTACAGGCTTCCCTCCAAACAATTGTTGGCATGGTCGTATACAGTTGGGCAAAAGTCTCCAAAGAGTGTATGGCGGATCTCTCCATTCATTACACCTACACGCTCGTTTTGGATGACAGCAGCGATGATCCGTACCCAGCCATGATGAACTACTTCAACGATCTTCAAGCTGGGCGAGAACAGGCCCATCCGTGGTGGGCGCTTGTTAATGAGCACTTCCCTAATGTCCTCCGTCATTTCGGTCCCTTCTGCTCGTTGAATCTTATCCGCAGCACTCTCGATTGTAAGTA-----CCCTGACTATATCAATTCACCGCCTCAGAAAA----CTGACCGCGATCGAATCACAGTTTTTGAAGGATGCTGGATCGAGCAGTACAACTTTGGAGGATTTCCAGGATCCCATGATTATCCTCAGTTTCTTCGACGCATGAACGGCTTAGGCCATTGTGTCGGGGCTTCTTTGTGGCCCAAGGAGCAGTTTGATGAGCGAAGTCTGTTTCTTGAAATTACATCAGCCATTGCCCAGATGGAGAACTGGATGGTTTGGGTCAATGATCTTATGTCGTTCTACAAGGAATTCG Fusarium_langsethiae_IBT9956 CGCCAACAGCAGCTACTCAAGGTAGACCCCAAGCGACTACAGGCTTCCCTCCAAACAATCGTTGGCATGGTCGTGTACAGTTGGGCAAAGGTCTCTAAAGAATGCATGGCCGATCTATCTATACATTACACGTACACTCTCGTTTTGGACGATAGCAAGGATGACCCGTACCCAACCATGGTAAACTATTTCGACGATCTTCAAGCCGGACGTGAACAAGCCCATCCGTGGTGGGCACTCGTCAACGAGCACTTTCCCAATGTCCTTCGGCATTTTGGTCCCTTCTGCTCATTGAACCTTATTCGCAGCACTCTGGACTGTAAGTA-----CCCCGGCCTTGTTATTCC-CCACATCCCGAAG----CTGACAATGATGGAATTATAGTTTTCGAGGGATGCTGGATCGAACAGTACAACTTTGGAGGATTTCCAGGATCTCATGACTACCCTCAATTTCTTCGACGTATGAACGGCTTGGGTCATTGTGTCGGGGCTTCTCTATGGCCCAAGGAGCAGTTCAATGAGCGAAGTCTATTCCTTGAGATTACATCAGCCATTGCCCAGATGGAGAACTGGATGGTCTGGGTCAATGATCTTATGTCATTCTACAAGGAATTCG Fusarium_langsethiae_IBT9990 CGCCAACAGCAGCTACTCAAGGTAGACCCCAAGCGACTACAGGCTTCCCTCCAAACAATCGTTGGCATGGTCGTGTACAGTTGGGCAAAGGTCTCTAAAGAATGCATGGCCGATCTATCTATACATTACACGTACACTCTCGTTTTGGACGATAGCAAGGATGACCCGTACCCAACCATGGTAAACTATTTCGACGATCTTCAAGCCGGACGTGAACAAGCCCATCCGTGGTGGGCACTCGTCAACGAGCACTTTCCCAATGTCCTTCGGCATTTTGGTCCCTTCTGCTCATTGAACCTTATTCGCAGCACTCTGGACTGTAAGTA-----CCCCGGCCTTGTTATTCC-CCACATCCCGAAG----CTGACAATGATGGAATTATAGTTTTCGAGGGATGCTGGATCGAACAGTACAACTTTGGAGGATTTCCAGGATCTCATGACTACCCTCAATTTCTTCGACGTATGAACGGCTTGGGTCATTGTGTCGGGGCTTCTCTATGGCCCAAGGAGCAGTTCAATGAGCGAAGTCTATTCCTTGAGATTACATCAGCCATTGCCCAGATGGAGAACTGGATGGTCTGGGTCAATGATCTTATGTCATTCTACAAGGAATTCG Fusarium_poae_BBA70744 CGACAACAGCAGCTACTCAAGGTAGACCCTAAGCGACTACAGGCTTCCCTCCAAACAATCGTTGGCATGGTCGTATACAGTTGGGCAAAGGTCTCTAAAGAGTGTATGGCGGATCTATCTATTCATTACACGTACACGCTCGTTTTGGATGACAGCAGCGACGACCCATATCCAGCCATGATGAACTATTTCAACGATCTTCAGGCCGGACGAGAACAGGCTCACCCGTGGTGGGCGCTTGTCAATGAGCACTTTCCCAATGTCCTTCGACATTTTGGTCCCTTCTGCTCGTTGAACCTTATCCGCAGCACTCTTGACTGTAAGTA-----CACTGGATACATTGTTTCACCACGACATGAAA----CTGACAGTTATGGAATTAAAGTTTTTGAGGGATGCTGGATCGAGCAGTACAACTTTGGAGGATTCCCAGGATCCCATGACTATCCTCAGTTTCTTCGACGCATGAATGGCTTGGGTCACTGTGTCGGGGCTTCTTTGTGGCCCAAGGAGCAGTTTGATGAACGAAGTCTATTCCTTGAAATCACATCAGCCATTGCTCAGATGGAGAACTGGATGGTCTGGGTCAACGATCTTATGTCATTCTACAAGGAATTCG Fusarium_poae_IBT9926 CGACAACAGCAGCTACTCAAGGTAGACCCTAAGCGACTACAGGCTTCCCTCCAAACAATCGTTGGCATGGTCGTATACAGTTGGGCAAAGGTCTCTAAAGAGTGTATGGCGGATCTATCTATTCATTACACGTACACGCTCGTTTTGGATGACAGCAGCGACGACCCATATCCAGCCATGATGAACTATTTCAACGATCTTCAGGCCGGACGAGAACAGGCTCACCCGTGGTGGGCGCTTGTCAATGAGCACTTTCCCAATGTCCTTCGACATTTTGGTCCCTTCTGCTCGTTGAACCTTATCCGCAGCACTCTTGACTGTAAGTA-----CACTGGATACATTGTTTCACCACGACATGAAA----CTGACAGTTATGGAATTAAAGTTTTTGAGGGATGCTGGATCGAGCAGTACAACTTTGGAGGATTCCCAGGATCCCATGACTATCCTCAGTTTCTTCGACGCATGAATGGCTTGGGTCACTGTGTCGGGGCTTCTTTGTGGCCCAAGGAGCAGTTTGATGAACGAAGTCTATTCCTTGAAATCACATCAGCCATTGCTCAGATGGAGAACTGGATGGTCTGGGTCAACGATCTTATGTCATTCTACAAGGAATTCG Fusarium_poae_U15658 CGACAACAGCAGCTACTCAAGGTAGACCCTAAGCGACTACAGGCTTCCCTCCAAACAATCGTTGGCATGGTCGTATACAGTTGGGCAAAGGTCTCTAAAGAGTGTATGGCGGATCTATCTATTCATTACACGTACACGCTCGTTTTGGATGACAGCAGCGACGACCCATATGCAGCCATGATGAACTATTTCAACGATCTTCAGGCCGGACGAGAACAGGCTCACCCGTGGTGGGCGCTTGTCAATGAGCACTTTCCCAATGTCCTTCGACATTTTGGTCCCTTCTGCTCGTTGAACCTTATCCGCAGCACTCTTGACTGTAAGTA-----CACTGGATACATTGTTTCACCACGACATGAAA----CTGACAGTTATGGAATTAAAGTTTTTGAGGGATGCTGGATCGAGCAGTACAACTTTGGAGGATTCCCAGGATCCCATGACTATCCTCAGTTTCTTCGACGCATGAATGGCTTGGGTCACTGTGTCGGGGCTTCTTTGTGGCCCAAGGAGCAGTTTGATGAACGAAGTCTATTCCTTGAAATCACATCAGCCATTGCTCAGATGGAGAACTGGATGGTCTGGGTCAACGATCTTATGTCATTCTACAAGGAATTCG Fusarium_pseudograminearum CGCCAACAGCAGCTGCTCAAGGTAGACCCTAAGCGACTACAGGCTTCTCTCCAAACAATCGTTGGCATGGTCGTATACAGTTGGGCAAAGGTGTCCAAAGAGTGCATGGCGGATCTATCTATTCACTACACCTACACTCTCGTTTTGGATGACAGCAGCGATGATCCTTATCCTGCTATGCTGAACTATTTTGGCGACCTTCAAGCCGGACGAGAGCAGGCCCATCCATGGTGGGCACTTGTCAACGAGCACTTTCCCAACGTCCTTCGCCATTTTGGACCCTTCTGCTCATTAAATCTTATCCGTAGCACGATGGACTGTAAGTAACTAACTTGGATTATATTATTTACCTGTATGAAGAAAGAAGCTGACGGCGGTGGAACGACAGTTTTTGAGGGATGCTGGATTGAGCAGTACAACTTTGGAGGATTCCCAGGATCTGATGACTACCCTCAATTCCTTCGACGCATGAACGGTTTGGGTCACTGTGTTGGGGCTTCTCTATGGCCCAAGGACCTGTTCGATGAGCGGAAGCATTTCCTTGAAATCACGTCAGCCGTTGCCCAGATGGAGAACTGGATGGTTTGGGTCAACGATCTCATGTCGTTCTACAAGGAATTCG Fusarium_sporotrichioides_IBT1906 CGCCAACAGCAGCTACTCAAGGTAGACCCCAAGCGACTACAGGCTTCCCTCCAAACAATCGTTGGCATGGTCGTGTACAGTTGGGCAAAGGTCTCTAAAGAATGCATGGCCGATCTATCTATACATTATACCTACACTCTCGTTTTGGACGATAGCAAGGATGACCCGTACCCAACCATGGTAAACTATTTCGACGATCTTCAAGCTGGACGCGAACAAGCCCATCCGTGGTGGGCACTCGTCAACGAGCACTTTCCCAATGTCCTTCGGCACTTTGGTCCCTTCTGCTCATTGAACCTTATTCGCAGCACTCTGGACTGTAAGTA-----CCCCGGCCTTGTTATTCCTCCACATCCCGAAG----TTGACAATGATGGAATTATAGTTTTCGAGGGATGCTGGATCGAACAGTACAACTTTGGAGGATTTCCAGGATCTCATGATTACCCTCAGTTTCTTCGACGTATGAACGGCTTGGGTCATTGTGTCGGGGCTTCTCTATGGCCCAAGGAGCAGTTCAATGAGCGAAGTCTATTCCTTGAGATTACATCAGCCATTGCCCAGATGGAGAACTGGATGGTCTGGGTCAATGATCTTATGTCATTCTACAAGGAATTCG Fusarium_sporotrichioides_IBT8804 CGCCAACAGCAGCTACTCAAGGTAGACCCCAAGCGACTACAGGCTTCCCTCCAAACAATCGTTGGCATGGTCGTGTACAGTTGGGCAAAGGTCTCTAAAGAATGCATGGCCGATCTATCTATACATTACACGTACACTCTCGTTTTGGACGATAGCAAGGATGACCCGTACCCAACCATGGTGAACTATTTCGACGATCTTCAAGCCGGACGTGAACAAGCCCATCCGTGGTGGGCACTCGTCAACGAGCACTTTCCCAATGTCCTTCGGCATTTTGGTCCCTTCTGCTCATTGAACCTTATTCGCAGCACTCTGGACTGTAAGTA-----CCCTGGCCTTGTTATTCCCCCACATCCCGAAG----CTGACAATGATGGAATTATAGTTTTCGAGGGATGCTGGATCGAACAGTACAACTTTGGAGGATTTCCAGGATCTCATGACTACCCTCAGTTTCTTCGACGTATGAACGGCTTGGGTCATTGTGTCGGGGCTTCTCTATGGCCCAAGGAGCAGTTCAATGAGCGAAGTCTGTTCCTTGAGATTACATCAGCCATTGCCCAGATGGAGAACTGGATGGTCTGGGTCAATGATCTTATGTCATTCTACAAGGAATTCG Fusarium_sporotrichioides_IBT9950 CGCCAACAGCAGCTACTCAAGGTAGACCCCAAGCGACTACAGGCTTCCCTCCAAACAATCGTTGGCATGGTCGTGTACAGTTGGGCAAAGGTCTCTAAAGAATGCATGGCCGATCTATCTATACATTATACCTACACTCTCGTTTTGGACGATAGCAAGGATGACCCGTACCCAACCATGGTAAACTATTTCGACGATCTTCAAGCTGGACGCGAACAAGCCCATCCGTGGTGGGCACTCGTCAACGAGCACTTTCCCAATGTCCTTCGGCACTTTGGTCCCTTCTGCTCATTGAACCTTATTCGCAGCACTCTGGACTGTAAGTA-----CCCCGGCCTTGTTATTCCTCCACATCCCGAAG----TTGACAATGATGGAATTATAGTTTTCGAGGGATGCTGGATCGAACAGTACAACTTTGGAGGATTTCCAGGATCTCATGATTACCCTCAGTTTCTTCGACGTATGAACGGCTTGGGTCATTGTGTCGGGGCTTCTCTATGGCCCAAGGAGCAGTTCAATGAGCGAAGTCTATTCCTTGAGATTACATCAGCCATTGCCCAGATGGAGAACTGGATGGTCTGGGTCAATGATCTTATGTCATTCTACAAGGAATTCG Fusarium_sporotrichioides_IBT9969 CGCCAACAGCAGCTACTCAAGGTAGACCCCAAACGACTACAGGCTTCCCTCCAAACAATCGTTGGCATGGTCGTGTACAGTTGGGCAAAGGTCTCTAAAGAATGCATGGCCGATCTATCTATACATTACACGTACACTCTCGTTTTGGACGATAGCAAGGATGACCCGTACCCAACCATGGTGAACTATTTCGACGATCTTCAAGCCGGACGTGAACAAGCCCATCCGTGGTGGGCACTCGTCAACGAGCACTTTCCCAATGTCCTTCGGCATTTTGGTCCCTTCTGCTCATTGAACCTTATTCGCAGCACTCTGGACTGTAAGTA-----CCCCGGCCTTGTTATTCCCCCACATCCCGAGG----CTGACCATGATGGAATTATAGTTTTCGAGGGATGCTGGATCGAACAGTACAACTTTGGAGGATTTCCAGGATCTCATGACTACCCTCAGTTTCTTCGACGTATGAACGGCTTGGGTCATTGTGTCGGGGCTTCTCTATGGCCCAAGGAGCAGTTCAATGAGCGAAGTCTATTCCTTGAGATTACATCAGCCATTGCCCAGATGGAGAACTGGATGGTCTGGGTCAATGATCTTATGTCATTCTACAAGGAATTCG Fusarium_sporotrichioides_M27246 CGCCAACAGCAGCTACTCAAGGTAGACCCCAAGCGACTACAGGCTTCCCTCCAAACAATCGTTGGCATGGTCGTGTACAGTTGGGCAAAGGTCTCTAAAGAATGCATGGCCGATCTATCTATACATTATACCTACACTCTCGTTTTGGACGATAGCAAGGATGACCCGTACCCAACCATGGTAAACTATTTCGACGATCTTCAAGCTGGACGCGAACAAGCCCATCCGTGGTGGGCACTCGTCAACGAGCACTTTCCCAATGTCCTTCGGCACTTTGGTCCCTTCTGCTCATTGAACCTTATTCGCAGCACTCTGGACTGTAAGTA-----CCCCGGCCTTGTTATTCCTCCACATCCCGAAG----TTGACAATGATGGAATTATAGTTTTCGAGGGATGCTGGATCGAACAGTACAACTTTGGAGGATTTCCAGGATCTCATGATTACCCTCAGTTTCTTCGACGTATGAACGGCTTGGGTCATTGTGTCGGGGCTTCTCTATGGCCCAAGGAGCAGTTCAATGAGCGAAGTCTATTCCTTGAGATTACATCAGCCATTGCCCAGATGGAGAACTGGATGGTCTGGGTCAATGATCTTATGTCATTCTACAAGGAATTCG ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = tri5align) = N: 1-622; CODONPOSSET CodonPositions (CHARACTERS = tri5align) = N: 1-622; END; BEGIN TREES; TITLE Tb6567; LINK TAXA = Taxa1; TRANSLATE 1 Fusarium_sporotrichioides_M27246, 2 Fusarium_sporotrichioides_IBT9969, 3 Fusarium_sporotrichioides_IBT9950, 4 Fusarium_sporotrichioides_IBT8804, 5 Fusarium_sporotrichioides_IBT1906, 6 Fusarium_pseudograminearum, 7 Fusarium_poae_U15658, 8 Fusarium_poae_IBT9926, 9 Fusarium_poae_BBA70744, 10 Fusarium_langsethiae_IBT9990, 11 Fusarium_langsethiae_IBT9956, 12 Fusarium_kyushuense_BBA70813, 13 Fusarium_kyushuense_BBA70812; TREE Figure = [&R] (6,((13,12)Fusarium_kyushuense,(8,7,9)Fusarium_poae),(((11,10)Fusarium_langsethiae,(4,5,1)),(3,2))); END;