#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 20, 2024; 6:56 GMT TreeBASE (cc) 1994-2008 Study reference: Diogo E.L., Santos J., & Phillips A. 2010. Phylogeny, morphology and pathogenicity of Diaporthe and Phomopsis species on almond in Portugal. Fungal Diversity, 44(1): 107-115. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S10334] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=41; TAXLABELS Diaporthe_australafricana_AF230744 Diaporthe_eres_DQ491514 Diaporthe_neotheicola_EU814480 Diaporthe_viticola_AY485750 Leucostoma_persoonii_DQ996042 Phomopsis_amygdali_11A Phomopsis_amygdali_16A Phomopsis_amygdali_17B Phomopsis_amygdali_25A Phomopsis_amygdali_29E Phomopsis_amygdali_3B Phomopsis_amygdali_48A1 Phomopsis_amygdali_55A Phomopsis_amygdali_62C1 Phomopsis_amygdali_64A Phomopsis_amygdali_67B Phomopsis_amygdali_AF102994 Phomopsis_amygdali_AF102995 Phomopsis_amygdali_AF102996 Phomopsis_amygdali_AF102997 Phomopsis_amygdali_AF102998 Phomopsis_amygdali_AF103001 Phomopsis_amygdali_AY485752 Phomopsis_magnolina_AY622995 Phomopsis_quercina_AJ293877 Phomopsis_sp_58A Phomopsis_sp_AB245079 Phomopsis_sp_U86406 Phomopsis_sp5_AY485727 Phomopsis_theicola_29C Phomopsis_theicola_43B Phomopsis_theicola_44A Phomopsis_theicola_44B Phomopsis_theicola_45B Phomopsis_theicola_46A Phomopsis_theicola_48B Phomopsis_theicola_CBS187_27 Phomopsis_theicola_DDQ286286 Phomopsis_theicola_DQ286287 Phomopsis_theicola_DQ286288 Valsa_ceratosperma_DQ241769 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M5013] TITLE Phomopsis_ITS_Alignment; LINK TAXA = Taxa1; DIMENSIONS NCHAR=656; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Diaporthe_australafricana_AF230744 -------------------------------------------------------------------------------------AAGGGTTTGTGAAGTTATAGGTATAGTGTTGGGTGGGGGTGAGGGTGGGGGGGGTGG-------GGGGGTGGGTGAGG-----------ATGTGGGTGAGGA--GGAGGGGGGGGGGGGGGGAAGTTAAGTGTTGTTTTTAGAGTG-AAAGTGTGAGAATAAAAGAAAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGATGGGGGAGTGGGTT---------CGGTAAGAAG---GGAGGGGGTGAAATTGAGTGGGGAGGTGGGGAGGAGGGGGAGGGGAGTAGTTAAAGGGTGGGTGTGGAAGGTGTTGGTGGGGGGGTGGGGTTAAAGGGGGAAGTTGTGAAAATT-------------------------------------------------------------- Diaporthe_eres_DQ491514 ------------------------------------------------ATCATTGGTGGAAGGGGGGGGAG-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CTAGGTGGTGGTT---C-------GGGGGGGGTGAGG-------------CGGGGGTGTTGA--GAGAGGGGGGGGGGGGGGAAGGGAAGTGTTGTTTTTAGAGTG-AAAGTGTGAGAATAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGATGGGGGAGTGGTTG--------TTAGGGAAGGA---GGAGGGGGTGAAATTGAGTGGGGAGGTGGGGAGGAGGGGGAGGGGAGTAGTTAAAGGGTGGGTGTGGAAGGGGGTGGGGGTGGGGTGGGGTTAAAGGGGGAAGTTGTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGGGG-TGAAGTTAA-GGATATGAATA------------ Diaporthe_neotheicola_EU814480 --------------------------------------------AGGGATCATTGGTGGAAGGGGGGGGTG-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CAGGGGGTGGGGTGA-T-------GGGGTGGGTGTGG-------------AGAGA--GAGGA--GGAG-CGGGGGGGTGGGGAAATTAAGTGT-GTTTTTAGAGTG-AAAGTGTGAGTAGAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGTTGGGGGAGTGGTGT----------CTGAGGAGA---GGAGGGGGTGAAATATAGTGGGGAGGTGGGGAGGAGTGGGAGGGTAGTAGTTAAAGGGTGGGTTTGGAAGGGG-TGGGGGTGGGGTGGGGTTAAAGGGG-AAGTTGTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGGGG-TGAAGTTAA------------------------ Diaporthe_viticola_AY485750 --------------------------------------------AGGGATCATTGTTGGAAGGGGGTTGGGGGGAGG-TGGAGAGAAGGGTTTGTGAAGTTATAGGTATAGTGTTGGGTGGGGGTGAGGGTGGGTGGGGTGG-------GGGGGTGGGTGAGG-----------ATGTGGGTGAGGA--GGAGGGGGGGGGGGGGGGAAGTTAAGTGTTGTTTTTAGAGTG-AAAGTGTGAGAATAAAAGAAAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGATGGGAGAGTGGGTT---------TGAGAA-AAG---GGAGGTGGTGAAATTGAGTGGGGAGGTGGGGAGGAGGGGGAGGGGAGTAGTTAAAGGGTGGGTTTGGAAGGTGTTGGTGGGGGGGTGGGGTTAAAGGGGGAAGTTGTGAAAATTTGAGGTCGGATGAGGT---------------------------------------------- Leucostoma_persoonii_DQ996042 --------------------------------------------AGGGATCATTGGTGGAA-GGGGGGGAAGGGGGAAGGGAGAAAGGG-TTTGTGAAGTTATAGGTATATGGTTGGGTGGGGG-CTGGGTGGGTGTGGGTGGT--GGAGGGGGGGGGGGTGTGGTGGTAAGAAAGGGAGGGGAGGAGAGGAGGGGGGGGGGTGGGGTAGGAAAGTGTTGTATTGATGGAGTAAAATGTGAGTAGATTTG-TAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGGGGTATTGGAGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTAGGTTGGTGTTGGGGGATTGGGTGA--CTGTTTT--AAGAGGA-GGGGAAGGGGTGAAATGTAGTGGGGAGGTGGGGAGGAGTGGGAGGGGAGTAGTGAAAGGGTGGGTGTGGATGGTAGTGGGGGGGGGGTGGGGTAAAAGGGGGAAGTTGTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGGGG-TGAAGTTAA------------------------ Phomopsis_amygdali_11A -------------------------TGGGTAGGTGAAGGTGGGGAGGGATCATTGGTGGAAGGGGGGTG-G-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CAGGGGGGGTGGGATGT-------GGGGGGGGGTGGT-------------TTGTGAGGAGGA--GGAGGGTGGGGGGGGGGGAAGTTAAGTGTTGTTTTTAATTTG-AAAGTGTGAGAATAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGATGGGGGAGTGGGTTT----GTGTAAAAGGGAAG---GGAGGGGGTGAAATTGAGTGGGGAGGTGGGGAGGAGTGGGAGGGGAGTAGTTAAAGGGTGGGTTTGGAAGGAG-TGGGGGTGGGGTGGGGTTAAAGGGGGAAGTGTTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGGGG-TGAAGTTAA-GGATATGAATAAGGGGAGGA--- Phomopsis_amygdali_16A -------------------------TGGGTAGGTGAAGGTGGGGAGGGATCATTGGTGGAAGGGGGGTG-G-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CAGGGGGGGTGGGATGT-------GGGGGGGGGTGGT-------------TTGTGAGGAGGA--GGAGGGTGGGGGGGGGGGAAGTTAAGTGTTGTTTTTAATTTG-AAAGTGTGAGAATAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGATGGGGGAGTGGGTTT----GTGTAAAAGGGAAG---GGAGGGGGTGAAATTGAGTGGGGAGGTGGGGAGGAGTGGGAGGGGAGTAGTTAAAGGGTGGGTTTGGAAGGAG-TGGGGGTGGGGTGGGGTTAAAGGGGGAAGTGTTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGGGG-TGAAGTTAAAGGATATGAATAAGGGGAGGA--- Phomopsis_amygdali_17B -------------------------TGGGTAGGTGAAGGTGGGGAGGGATCATTGGTGGAAGGGGGGTG-G-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CAGGGGGGGTGGGATGT-------GGGGGGGGGTGGT-------------TTGTGAGGAGGA--GGAGGGTGGGGGGGGGGGAAGTTAAGTGTTGTTTTTAATTTG-AAAGTGTGAGAATAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGATGGGGGAGTGGGTTT----GTGTAAAAGGGAAG---GGAGGGGGTGAAATTGAGTGGGGAGGTGGGGAGGAGTGGGAGGGGAGTAGTTAAAGGGTGGGTTTGGAAGGAG-TGGGGGTGGGGTGGGGTTAAAGGGGGAAGTGTTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGGGG-TGAAGT--A-GGATATGAATAAGGGGAGGA--- Phomopsis_amygdali_25A -------------------------TGGGTAGGTGAAGGTGGGGAGGGATCATTGGTGGAAGGGGGGTG-G-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CAGGGGGGGTGGGATGT-------GGGGGGGGGTGGT-------------TTGTGAGGAGGA--GGAGGGTGGGGGGGGGGGAAGTTAAGTGTTGTTTTTAATTTG-AAAGTGTGAGAATAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGATGGGGGAGTGGGTTT----GTGTAAAAGGGAAG---GGAGGGGGTGAAATTGAGTGGGGAGGTGGGGAGGAGTGGGAGGGGAGTAGTTAAAGGGTGGGTTTGGAAGGAG-TGGGGGTGGGGTGGGGTTAAAGGGGGAAGTGTTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGGGG-TGAAGTTAA-GGATATGAATAAGGGGAGGA--- Phomopsis_amygdali_29E -------------------------TGGGTAGGTGAAGGTGGGGAGGGATCATTGGTGGAAGGGGGGTG-G-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CAGGGGGGGTGGGATGT-------GGGGGGGGGTGGT-------------TTGTGAGGAGGA--GGAGGGTGGGGGGGGGGGAAGTTAAGTGTTGTTTTTAATTTG-AAAGTGTGAGAATAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGATGGGGGAGTGGGTTT----GTGTAAAAGGGAAG---GGAGGGGGTGAAATTGAGTGGGGAGGTGGGGAGGAGTGGGAGGGGAGTAGTTAAAGGGTGGGTTTGGAAGGAG-TGGGGGTGGGGTGGGGTTAAAGGGGGAAGTGTTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGGGG-TGAAGTTAA-GGATATGAATAAGGGGAGGA--- Phomopsis_amygdali_3B -------------------------TGGGTAGGTGAAGGTGGGGAGGGATCATTGGTGGAAGGGGGGTG-G-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CAGGGGGGGTGGGATGT-------GGGGGGGGGTGGT-------------TTGTGAGGAGGA--GGAGGGTGGGGGGGGGGGAAGTTAAGTGTTGTTTTTAATTTG-AAAGTGTGAGAATAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGATGGGGGAGTGGGTTT----GTGTAAAAGGGAAG---GGAGGGGGTGAAATTGAGTGGGGAGGTGGGGAGGAGTGGGAGGGGAGTAGTTAAAGGGTGGGTTTGGAAGGAG-TGGGGGTGGGGTGGGGTTAAAGGGGGAAGTGTTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGGGG-TGAAGTTAA-GGATATGAATAAGGGGAGGA--- Phomopsis_amygdali_48A1 -------------------------TGGGTAGGTGAAGGTGGGGAGGGATCATTGGTGGAAGGGGGGTG-G-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CAGGGGGGGTGGGATGT-------GGGGGGGGGTGGT-------------TTGTGAGGAGGA--GGAGGGTGGGGGGGGGGGAAGTTAAGTGTTGTTTTTAATTTG-AAAGTGTGAGAATAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGATGGGGGAGTGGGTTT----GTGTAAAAGGGAAG---GGAGGGGGTGAAATTGAGTGGGGAGGTGGGGAGGAGTGGGAGGGGAGTAGTTAAAGGGTGGGTTTGGAAGGAG-TGGGGGTGGGGTGGGGTTAAAGGGGGAAGTGTTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGGGGGTGAAGTTAA-GGATATGAATAAGGGGAGGA--- Phomopsis_amygdali_55A -------------------------TGGGTAGGTGAAGGTGGGGAGGGATCATTGGTGGAAGGGGGGTG-G-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CAGGGGGGGTGGGATGT-------GGGGGGGGGTGGT-------------TTGTGAGGAGGA--GGAGGGTGGGGGGGGGGGAAGTTAAGTGTTGTTTTTAATTTG-AAAGTGTGAGAATAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGATGGGGGAGTGGGTTT----GTGTAAAAGGGAAG---GGAGGGGGTGAAATTGAGTGGGGAGGTGGGGAGGAGTGGGAGGGGAGTAGTTAAAGGGTGGGTTTGGAAGGAG-TGGGGGTGGGGTGGGGTTAAAGGGGGAAGTGTTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGGGG-TGAAGTTAA-GGATATGAATAAGGGGAGGA--- Phomopsis_amygdali_62C1 -------------------------TGGGTAGGTGAAGGTGGGGAGGGATCATTGGTGGAAGGGGGGTG-G-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CAGGGGGGGTGGGATGT-------GGGGGGGGGTGGT-------------TTGTGAGGAGGA--GGAGGGTGGGGGGGGGGGAAGTTAAGTGTTGTTTTTAATTTG-AAAGTGTGAGAATAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGATGGGGGAGTGGGTTT----GTGTAAAAGGGAAG---GGAGGGGGTGAAATTGAGTGGGGAGGTGGGGAGGAGTGGGAGGGGAGTAGTTAAAGGGTGGGTTTGGAAGGAG-TGGGGGTGGGGTGGGGTTAAAGGGGGAAGTGTTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGGGG-TGAAGTTAA-GGATATGAATAAGGGGAGGA--- Phomopsis_amygdali_64A -------------------------TGGGTAGGTGAAGGTGGGGAGGGATCATTGGTGGAAGGGGGGTG-G-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CAGGGGGGGTGGGATGT-------GGGGGGGGGTGGT-------------TTGTGAGGAGGA--GGAGGGTGGGGGGGGGGGAAGTTAAGTGTTGTTTTTAATTTG-AAAGTGTGAGAATAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGATGGGGGAGTGGGTTT----GTGTAAAAGGGAAG---GGAGGGGGTGAAATTGAGTGGGGAGGTGGGGAGGAGTGGGAGGGGAGTAGTTAAAGGGTGGGTTTGGAAGGAG-TGGGGGTGGGGTGGGGTTAAAGGGGGAAGTGTTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGGGG-TGAAGTTAA-GGATATGAATAAGGGGAGGA--- Phomopsis_amygdali_67B -------------------------TGGGTAGGTGAAGGTGGGGAGGGATCATTGGTGGAAGGGGGGTG-G-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CAGGGGGGGTGGGATGT-------GGGGGGGGGTGGT-------------TTGTGAGGAGGA--GGAGGGTGGGGGGGGGGGAAGTTAAGTGTTGTTTTTAATTTG-AAAGTGTGAGAATAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGATGGGGGAGTGGGTTT----GTGTAAAAGGGAAG---GGAGGGGGTGAAATTGAGTGGGGAGGTGGGGAGGAGTGGGAGGGGAGTAGTTAAAGGGTGGGTTTGGAAGGAG-TGGGGGTGGGGTGGGGTTAAAGGGGGAAGTGTTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGGGG-TGAAGTTAA-GGATATGAATAAGGGGAGGA--- Phomopsis_amygdali_AF102994 TGGAAGTAAAAGTGGTAAGAAGGTGTGGGTTGGTGAAGGAGGGGAGGGATCATTGGTGGAAGGGGGGTG-G-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CAGGGGGGGTGGGATGT-------GGGGGGGGGTGGT-------------TTGTGAGGAGGA--GGAGGGTGGGGGGGGGGGAAGTTAAGTGTTGTTTTTAATTTG-AAAGTGTGAGAATAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGATGGGGGAGTGGGTTT----GTGTAAAAGGGAAG---GGAGGGGGTGAAATTGAGTGGGGAGGTGGGGAGGAGTGGGAGGGGAGTAGTTAAAGGGTGGGTTTGGAAGGAG-TGGGGGTGGGGTGGGGTTAAAGGGG-AAGTGTTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGGGG-TGAAGTTAA-GGATATGAATAAGGGGAGGAA-- Phomopsis_amygdali_AF102995 TGGAAGTAAAAGTGGTAAGAAGGTGTGGGTTGGTGAAGGAGGGGAGGGATCATTGGTGGAAGGGGGGTG-G-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CAGGGGGGGTGGGATGT-------GGGGGGGGGTGGT-------------TTGTGAGGAGGA--GGAGGGTGGGGGGGGGGGAAGTTAAGTGTTGTTTTTAATTTG-AAAGTGTGAGAATAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGATGGGGGAGTGGGTTT----GTGTAAAAGGGAAG---GGAGGGGGTGAAATTGAGTGGGGAGGTGGGGAGGAGTGGGAGGGGAGTAGTTAAAGGGTGGGTTTGGAAGGAG-TGGGGGTGGGGTGGGGTTAAAGGGGGAAGTGTTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGGGG-TGAAGTTAA-GGATATGAATAAGGGGAGGA--- Phomopsis_amygdali_AF102996 TGGAAGTAAAAGTGGTAAGAAGGTGTGGGTTGGTGAAGGAGGGGAGGGATCATTGGTGGAAGGGGGGTG-G-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CAGGGGGGGTGGGATGT-------GGGGGGGGGTGGT-------------TTGTGAGGAGGA--GGAGGGTGGGGGGGGGGGAAGTTAAGTGTTGTTTTTAATTTG-AAAGTGTGAGAATAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGATGGGGGAGTGGGTTT----GTGTAAAAGGGAAG---GGAGGGGGTGAAATTGAGTGGGGAGGTGGGGAGGAGTGGGAGGGGAGTAGTTAAAGGGTGGGTTTGGAAGGAG-TGGGGGTGGGGTGGGGTTAAAGGGGGAAGTGTTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGGGG-TGAAGTTAA-GGATATGAATA?GGGGAGGA--- Phomopsis_amygdali_AF102997 TGGAAGTAAAAGTGGTAAGAAGGTGTGGGTTGGTGAAGGAGGGGAGGGATCATTGGTGGAAGGGGGGTG-G-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CAGGGGGGGTGGGATGT-------GGGGGGGGGTGGT-------------TTGTGAGGAGGA--GGAGGGTGGGGGGGGGGGAAGTTAAGTGTTGTTTTTAATTTG-AAAGTGTGAGAATAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGATGGGGGAGTGGGTTT----GTGTAAAAGGGAAG---GGAGGGGGTGAAATTGAGTGGGGAGGTGGGGAGGAGTGGGAGGGGAGTAGTTAAAGGGTGGGTTTGGAAGGAG-TGGGGGTGGGGTGGGGTTAAAGGGGGAAGTGTTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGGGG-TGAAGTTAA-GGATATGAATAAGGGGAGGA--- Phomopsis_amygdali_AF102998 TGGAAGTAAAAGTGGTAAGAAGGTGTGGGTTGGTGAAGGAGGGGAGGGATCATTGGTGGAAGGGGGGTG-G-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CAGGGGGGGGGGGTTGT-------GGGGGGGGGTGGT-------------TGGTGAGGAGGA--GGAGGGTGGGGGGGGGGGAAGTTAAGTGTTGTTTTTATTGTG-AAAGTGTGAGAATAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGATGGGGGAGTGGGTT-----GTGTAAAAAGGA-G---GGAGGGGGTGAAATTGAGTGGGGAGGTGGGGAGGAGTGGGAGGGGAGTAGTTAAAGGGTGGGTTTGGAAGGAG-TGGGGGTGGGGTGGGGTTAAAGGGGGAAGTGTTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGGGG-TGAAGTTAA-GGATATGAATAAGGGGAGGAA-- Phomopsis_amygdali_AF103001 TGGAAGTAAAAGTGGTAAGAAGGTGTGGGTTGGTGAAGGAGGGGAGGGATCATTGGTGGAAGGGGGGGGAG-GGGGA-CGGAGAAAGGGATTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CTAGGTGGTGGTT---C-------GGG-CGGGTGAGG-------------CTGGGGTGTTGA--GAGAGGGGGGGGGGGGGGAAGGGAAGTGTTGTTTTTAGAGTG-AAAGTGTGAGAATAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGATGGGGGAGTGGTT---------TTAGGGAAGA----GGAGGGGGTGAAATTGAGTGGGGAGGTGGGGAGGAGGGGGAGGGGAGTAGTTAAAGGGTGGGTGTGGAAGGGGGTGGGGGTGGGGTGGGGTTAAAGGGGGAAGTTGTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGGGG-TGAAGTTAA-GGATATGAATAA?GGGGAGGAAT Phomopsis_amygdali_AY485752 --------------------------------------------AGGGATCATTGGTGGAAGGGGGGGGAG-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TATTGTTGGGTGGGGG-CAGGGGGGGTGGGATGT-------GGGGGGGGGTGGT-------------TTGTGAGGAGGA--GGAGGGTGGGGGGGGGGGAAGTTAAGTGTTGTTTTTAATTTG-AAAGTGTGAGAATAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGATGGGGGAGTGGGTT-----GTGTAAAAGGGA-G---GGAGGGGGTGAAATTGAGTGGGGAGGTGGGGAGGAGTGGGAGGGGAGTAGTTAAAGGGTGGGTTTGGAAGGAG-TGGGGGTGGGGTGGGGTTAAAGGGGGAAGTTGTGAAAATTTGAGGTCGGATGAGGT---------------------------------------------- Phomopsis_magnolina_AY622995 -------------------------------------CGAGGGGAGGGATCATTGGTGGAAGGGGGGGGAG-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CTAGGTGGTGGTT---C-------GGGGGGGGTGAGG-------------CTGGGGTGTTGA--GAGAGGGGGGGGGGGGGGAAGGGAAGTGTTGTTTTTAGAGTG-AAAGTGTGAGAATAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGATGGGGGAGTGGTTG--------TTAGGGAAGAA---GGAGGGGGTGAAATTGAGTGGGGAGGTGGGGAGGAGGGGGAGGGGAGTAGTTAAAGGGTGGGTGTGGAAGGGGGTGGGGGTGGGGTGGGGTTAAAGGGGGAAGTTGTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGG------------------------------------ Phomopsis_quercina_AJ293877 -------------------------------GGTGAAGGAGGGGAGGGATCATTGGTGGAAGGGGGGGGAG-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CTAGGTGGTGGTT---C-------GGGGGGGGTGAGG-------------CTGGGGTGTTGA--GATAGGGGGGGGGGGGGGAAGGGAAGTGTTGTTTTTAGAGTG-AAAGTGTGAGAATAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGATGGGGGAGTGGTT---------TTAGGGAAGA----GGAGGGGGTGAAATTGAGTGGGGAGGTGGGGAGGAGGGGGAGGGGAGTAGTTAAAGGGTGGGTGTGGAAGGGGGTGGGGGTGGGGTGGGGTTAAAGGGGGAAGTTGTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGGGG-TGAAGTTAA------------------------ Phomopsis_sp_58A -------------------------TGGGTAGGTGAAGGTGGGGAGGGATCATTGGTGGAAGGGGGGGGAG-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CTAGGTGGTGGTT---C-------GGGGGGGGTGAGG-------------CGGGGGTGTTGA--GAGAGGGGGGGGGGGGGGAAGGGAAGTGTTGTTTTTAGAGTG-AAAGTGTGAGAATAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGATGGGGGAGTGGTTG--------TTAGGGAAGGA---GGAGGGGGTGAAATTGAGTGGGGAGGTGGGGAGGAGGGGGAGGGGAGTAGTTAAAGGGTGGGTGTGGAAGGGGGTGGGGGTGGGGTGGGGTTAAAGGGGGAAGTTGTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGGGG-TGAAGT-AA-GGATATGAATAAGGGGAGGA--- Phomopsis_sp_AB245079 ----------------------------------------------GGATCATTGGTGGAAGGGGGGGGAG-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CTAGGTGGTGGTT---C-------GGGGGGGGTGAGG-------------CTGGGGTGTTGA--GAGAGGGGGGGGGGGGGGAAGGGAAGTGTTGTTTTTAGAGTG-AAAGTGTGAGAATAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGATGGGGGAGTGGTTG--------TTAGGGAAGAA---GGAGGGGGTGAAATTGAGTGGGGAGGTGGGGAGGAGGGGGAGGGGAGTAGTTAAAGGGTGGGTGTGGAAGGGGGTGGGGGTGGGGTGGGGTTAAAGGGGGAAGTTGTGAAAATTTGAGGTCGGATGAGGTAGGAATA--------------------------------------- Phomopsis_sp_U86406 ----------------------------------GAAGGAGGGGAGGGATCATTGGTGGAAGGGGGGTG-G-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CAGGGGGGGTGGGATGT-------GGGGGGGGGTGGT-------------TTGTGAGGAGGA--GGAGGGTGGGGGGGGGGGAAGTTAAGTGTTGTTTTTAATTTG-AAAGTGTGAGAATAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGATGGGGGAGTGGGTTT----GTGTAAAAGGGAAG---GGAGGGGGTGAAATTGAGTGGGGAGGTGGGGAGGAGTGGGAGGGGAGTAGTTAAAGGGTGGGTTTGGAAGGAG-TGGGGGTGGGGTGGGGTTAAAGGGGGAAGTGTTGAAAATTTGAGGTCGGATGAGGTA--------------------------------------------- Phomopsis_sp5_AY485727 --------------------------------------------AGGGATCATTGGTGGAAGGGGGGTG-G-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CAGGGGGGGGGGGGTTG-------GGGGGGGGGTGGT-------------TGGTGAGGAGGA--GGAGGGTGGGGGGGGGGGAAGTTAAGTGTTGTTTTTAATTTG-AAAGTGTGAGAATAAAAGATAAATGAATTAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGATGGGGGAGTGGGTT-----GTGTAAAAGGGA-G---GGAGGGGGTGAAATTGAGTGGGGAGGTGGGGAGGAGTGGGAGGGGAGTAGTTAAAGGGTGGGTTTGGAAGGAG-TGGGGGTGGGGTGGGGTTAAAGGGGGAAGTTGTGAAAATTTGAGGTCGGATGAGGT---------------------------------------------- Phomopsis_theicola_29C -------------------------TGGGTAGGTGAAGGTGGGGAGGGATCATTGGTGGAAGGGGGGGGTG-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CAGGGGGTGGGGTGA-T-------GGGGTGGGTGTGG-------------AGAGA--GAGGA--GGAG-CGGGGGGGTGGGGAAATTAAGTGT-GTTTTTAGAGTG-AAAGTGTGAGTAGAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGTTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGTTGGGGGAGTGGTGT----------CTGAGGAGA---GGAGGGGGTGAAATATAGTGGGGAGGTGGGGAGGAGTGGGAGGGTAGTAGTTAAAGGGTGGGTTTGGAAGGGG-TGGGGGTGGGGTGGGGTTAAAGGGG-AAGTTGTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGGGG-TGAAGTTAA-GGATATGAATAAGGGGAGGA--- Phomopsis_theicola_43B -------------------------TGGGTAGGTGAAGGTGGGGAGGGATCATTGGTGGAAGGGGGGGGTG-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CAGGGGGTGGGGTGA-T-------GGGGTGGGTGTGG-------------AGAGA--GAGGA--GGAG-CGGGGGGGTGGGGAAATTAAGTGT-GTTTTTAGAGTG-AAAGTGTGAGTAGAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGTTGGGGGAGTGGTGT----------CTGAGGAGA---GGAGGGGGTGAAATATAGTGGGGAGGTGGGGAGGAGTGGGAGGGTAGTAGTTAAAGGGTGGGTTTGGAAGGGG-TGGGGGTGGGGTGGGGTTAAAGGGG-AAGTTGTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGGGG-TGAAGTTAA-GGATATGAATAAGGGGAGGA--- Phomopsis_theicola_44A -------------------------TGGGTAGGTGAAGGTGGGGAGGGATCATTGGTGGAAGGGGGGGGTG-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CAGGGGGTGGGGTGA-T-------GGGGTGGGTGTGG-------------AGAGA--GAGGA--GGAG-CGGGGGGGTGGGGAAATTAAGTGT-GTTTTTAGAGTG-AAAGTGTGAGTAGAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGTTGGGGGAGTGGTGT----------CTGAGGAGA---GGAGGGGGTGAAATATAGTGGGGAGGTGGGGAGGAGTGGGAGGGTAGTAGTTAAAGGGTGGGTTTGGAAGGGG-TGGGGGTGGGGTGGGGTTAAAGGGG-AAGTTGTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGGGG-TGAAGTTAA-GGATATGAATAAGGGGAGGA--- Phomopsis_theicola_44B -------------------------TGGGTAGGTGAAGGTGGGGAGGGATCATTGGTGGAAGGGGGGGGTG-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CAGGGGGTGGGGTGA-T-------GGGGTGGGTGTGG-------------AGAGA--GAGGA--GGAG-CGGGGGGGTGGGGAAATTAAGTGT-GTTTTTAGAGTG-AAAGTGTGAGTAGAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGTTGGGGGAGTGGTGT----------CTGAGGAGA---GGAGGGGGTGAAATATAGTGGGGAGGTGGGGAGGAGTGGGAGGGTAGTAGTTAAAGGGTGGGTTTGGAAGGGG-TGGGGGTGGGGTGGGGTTAAAGGGG-AAGTTGTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGGGG-TGAAGTTAA-GGATATGAATAAGGGGAGGA--- Phomopsis_theicola_45B -------------------------TGGGTAGGTGAAGGTGGGGAGGGATCATTGGTGGAAGGGGGGGGTG-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CAGGGGGTGGGGTGA-T-------GGGGTGGGTGTGG-------------AGAGA--GAGGA--GGAG-CGGGGGGGTGGGGAAATTAAGTGT-GTTTTTAGAGTG-AAAGTGTGAGTAGAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGTTGGGGGAGTGGTGT----------CTGAGGAGA---GGAGGGGGTGAAATATAGTGGGGAGGTGGGGAGGAGTGGGAGGGTAGTAGTTAAAGGGTGGGTTTGGAAGGGG-TGGGGGTGGGGTGGGGTTAAAGGGG-AAGTTGTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGGGG-TGAAGTTAA-GGATATGAATAAGGGGAGGA--- Phomopsis_theicola_46A -------------------------TGGGTAGGTGAAGGTGGGGAGGGATCATTGGTGGAAGGGGGGGGTG-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CAGGGGGTGGGGTGA-T-------GGGGTGGGTGTGG-------------AGAGA--GAGGA--GGAG-CGGGGGGGTGGGGAAATTAAGTGT-GTTTTTAGAGTG-AAAGTGTGAGTAGAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGTTGGGGGAGTGGTGT----------CTGAGGAGA---GGAGGGGGTGAAATATAGTGGGGAGGTGGGGAGGAGTGGGAGGGTAGTAGTTAAAGGGTGGGTTTGGAAGGGG-TGGGGGTGGGGTGGGGTTAAAGGGG-AAGTTGTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGGGG-TGAAGTTAA-GGATATGAATAAGGGGAGGA--- Phomopsis_theicola_48B -------------------------TGGGTAGGTGAAGGTGGGGAGGGATCATTGGTGGAAGGGGGGGGTG-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTAGAGGT-TAGTGTTGGGTGGGGG-CAGGGGGTGGGGTGA-T-------GGGGTGGGTGTGG-------------AGAGA--GAGGA--GGAG-CGGGGGGGTGGGGAAATTAAGTGT-GTTTTGAGAGTG-AAAGTGTGAGTAGAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGTTGGGGGAGTGGTGT----------CTGAGGAGA---GGAGGGGGTGAAATATAGTGGGGAGGTGGGGAGGAGTGGGAGGGTAGTAGTTAAAGGGTGGGTTTGGAAGGGG-TGGGGGTGGGGTGGGGTTAAAGGGG-AAGTTGTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGGGG-TGAAGTTAA-GGATATGAATAAGGGGAGGA--- Phomopsis_theicola_CBS187_27 ----------------------------------TGAGGAGGGGAGGGATCATTGGTGGAAGGGGGGGGTG-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CAGGGGGTGGGGTGA-T-------GGGGTGGGTGTGG-------------AGAGA--GAGGA--GGAG-CGGGGGGGTGGGGAAATTAAGTGT-GTTTTTAGAGTG-AAAGTGTGAGTAGAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGTTGGGGGAGTGGTGT----------CTGAGGAGA---GGAGGGGGTGAAATATAGTGGGGAGGTGGGGAGGAGTGGGAGGGTAGTAGTTAAAGGGTGGGTTTGGAAGGGG-TGGGGGTGGGGTGGGGTTAAAGGGG-AAGTTGTGAAAATTTGAGGT-------------------------------------------------------- Phomopsis_theicola_DDQ286286 ----------------------------------------------GGATCATTGGTGGAAGGGGGGGGTG-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CAGGGGGTGGGGTGA-T-------GGGGTGGGTGTGG-------------AGAGA--GAGGA--GGAG-CGGGGGGGTGGGGAAATTAAGTGT-GTTTTTAGAGTG-AAAGTGTGAGTAGAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGTTGGGGGAGTGGTTT----------CTAAGGAGA---GGAGGGGGTGAAATATAGTGGGGAGGTGGGGAGGAGTGGGAGGGTAGTAGTTAAAGGGTGGGTTTGGAAGGGG-TGGGGGTGGGGTGGGGTTAAAGGGG-AAGTTGTGAAAATTTGAGGTCGGATGAGGTAGGAATA--------------------------------------- Phomopsis_theicola_DQ286287 ----------------------------------------------GGATCATTGGTGGAAGGGGGGGGTG-GGGGA-CGGAGAAAGGG-TTTGTGAAGTCATAGGT-TAGTGTTGGGTGGGGG-CAGGGGGTGGGGTAAAT-------GGGGTGGGTGTGG-------------AGAGG--GAGGA--GGAG-CGGGGGGGTGGGGAAATTAAGTGT-GTTTTTAAAGTG-AAAGTGTGAGTAGAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGTTGGGGGAGTGGTGT----------CTGAGGAGA---GGAGGGGGTGAAATATAGTGGGGAGGTGGGGAGGAGTGGGAGGGTAGTAGTTAAAGGGTGGGTGTGGAAGGGG-TGGGGGTGGGGTGGGGTTAAAGGGG-AAGTTGTGAAAATTTGAGGTCGGATGAGGTAGGAATA--------------------------------------- Phomopsis_theicola_DQ286288 ----------------------------------------------GGATCATTGGTGGAAGGGGGGGGTG-GGGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGT-TAGTGTTGGGTGGGGG-CAGGGGGTGGGGTAAAT-------GGGGTGGGTGTGG-------------AGAGG--GAGGA--GGAG-CGGGGGGGTGGGGAAATTAAGTGT-GTTTTTAAAGTG-AAAGTGTGAGTAGAAAAGATAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGGGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTGGGTTGGTGTTGGGGGAGTGGTTT----------CTAAGGAGA---GGAGGGGGTGAAATATAGTGGGGAGGTGGGGAGGAGTGGGAGGGTAGTAGTTAAAGGGTGGGTTTGGAAGGGG-TGGGGGTGGGGTGGGGTTAAAGGGG-AAGTTGTGAAAATTTGAGGTCGGATGAGGTAGGAATA--------------------------------------- Valsa_ceratosperma_DQ241769 --------------------------------------------AGGGATCATTGGTGGAA-GGGGGGGAAGGTGGA-CGGAGAAAGGG-TTTGTGAAGTTATAGGTAGATGGTTGGGTGGGGG-CTGGGTGGGGGTGGGGGGGTGGGAGGGGGGGGGGGTGTGGTGGTAA-AAAGGGAGGGGAGGAGAGGAGGGGGGGGGGGGGGGGAATTAAGTGTTGTATTTAGTGAGTAAAATGTGAGTAAGGTTG-TAAATGAATGAAAAGTTTGAAGAAGGGATGTGTTGGTTGTGGGATGGATGAAGAAGGGAGGGAAATGGGATAAGTAATGTGAATTGGAGAATTGAGTGAATGATGGAATGTTTGAAGGGAGATTGGGGGGTGTGGTATTGGAGAGGGGATGGGTGTTGGAGGGTGATTTGAAGGGTGAAGGGTTGGTTGGTGTTGGGGGATTAGGTGAGAGGGGGTGGGGGGGGGGGGGGTAAGGGGTGAAATTTAGTGGGGAGGTGGGGAGGAGTGGGAGGGGAGTAGTAAAAGGGTGGGTTTGGAGTGTAGTGGGGGGGGGGTGGGGTAAAAGGGGGAAGTTGTGAAAATTTGAGGTCGGATGAGGTAGGAATAGGGGG-TGAAGTTAA------------------------ ; END; BEGIN TREES; TITLE Fig._2; LINK TAXA = Taxa1; TRANSLATE 1 Phomopsis_sp_58A, 2 Diaporthe_eres_DQ491514, 3 Phomopsis_amygdali_AF103001, 4 Phomopsis_quercina_AJ293877, 5 Phomopsis_magnolina_AY622995, 6 Phomopsis_sp_AB245079, 7 Phomopsis_theicola_44A, 8 Diaporthe_neotheicola_EU814480, 9 Phomopsis_theicola_46A, 10 Phomopsis_theicola_29C, 11 Phomopsis_theicola_43B, 12 Phomopsis_theicola_CBS187_27, 13 Phomopsis_theicola_44B, 14 Phomopsis_theicola_45B, 15 Phomopsis_theicola_48B, 16 Phomopsis_theicola_DQ286288, 17 Phomopsis_theicola_DQ286287, 18 Phomopsis_theicola_DDQ286286, 19 Phomopsis_amygdali_16A, 20 Phomopsis_amygdali_67B, 21 Phomopsis_amygdali_55A, 22 Phomopsis_amygdali_3B, 23 Phomopsis_amygdali_17B, 24 Phomopsis_amygdali_48A1, 25 Phomopsis_amygdali_62C1, 26 Phomopsis_amygdali_25A, 27 Phomopsis_amygdali_29E, 28 Phomopsis_amygdali_11A, 29 Phomopsis_amygdali_64A, 30 Phomopsis_amygdali_AF102997, 31 Phomopsis_amygdali_AF102994, 32 Phomopsis_amygdali_AF102995, 33 Phomopsis_amygdali_AF102996, 34 Phomopsis_sp_U86406, 35 Phomopsis_amygdali_AY485752, 36 Phomopsis_sp5_AY485727, 37 Phomopsis_amygdali_AF102998, 38 Diaporthe_viticola_AY485750, 39 Diaporthe_australafricana_AF230744, 40 Leucostoma_persoonii_DQ996042, 41 Valsa_ceratosperma_DQ241769; TREE Fig_2 = [&R] ((41:24.0,40:24.0):2.5,((1:0.0,(4,3):2.0,(2:0.0,5:0.0,6):2.0):84.0,(((17:4.0,16:0.0),(18:0.0,(15:2.0,14:0.0,13:0.0,12:0.0,11:0.0,10,9:0.0,8:0.0,7:0.0):2.0):3.0):22.0,((39:4.0,38:4.0):19.0,(37:4.0,(36:3.0,(35,(34:0.0,33:0.0,32:0.0,31,30:0.0,29:0.0,28:0.0,27:0.0,26:0.0,25:0.0,24:0.0,23:0.0,22:0.0,21:0.0,20:0.0,19:0.0):4.0):3.0):2.0):14.0):12.0):64.0):2.5); END;