#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on March 28, 2024; 8:25 GMT TreeBASE (cc) 1994-2008 Study reference: Brullo S., & Downie S. 2011. A systematic study of Peucedanum nebrodense. Taxon, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S10867] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=13; TAXLABELS Aethusa_cynapium Dichoropetalum_achaicum Dichoropetalum_aromaticum Dichoropetalum_carvifolia Dichoropetalum_golestanicum Dichoropetalum_paucijugum Dichoropetalum_pschawicum Dichoropetalum_schottii Dichoropetalum_scoparium Dichoropetalum_seseloides Ormosolenia_alpina Ormosolenia_pisidica Peucedanum_nebrodense ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M6641] TITLE Peucedanum_nebrodense; LINK TAXA = Taxa1; DIMENSIONS NCHAR=755; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3 A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Aethusa_cynapium 01223122111001301110TCGAATCCT--GCAA-TAG---CAGAATGA-CCCGCTAACACGT--AAACAATTT-GGG-CAA--GCGT-CGGG-GG------GCCT-TGGT----CCCC-TGTCT-GCGAATCC--CTGG---TAGG-TGG--CCAC-------TCCCGGGTGG-CCACTGGC-CTGCA-AAAATCATTCGGG-CGCGGAATGCGCCAAGGA-CCTT--AAAACTGAATT-GTAC-GTCCGTATC-CCGTT-AGCGGG---------------CAAC---GGC-GTCG-TTCCAAAA--CAC??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATCGTCTT-GCCCC-ACAAAACCACTC-AC--TCCT-GAGAA-GTTGT-GCC---GGTTTGGGGG-CGGAAACTGGCCTCCCG--TGCCTTGTC-GTG---CGGTTGGCGGAAAGGC-GAG--TCTCC---GGCG-ATGGACGTCGCG-ACATCGG-TGG--TTGT---AA--AAGG-CCCTCTT-GTCTTGTCGCGCGAAT--CCTCGTC-ATCT-TAGCGA-GCTC--CAGGACCCTTA-GGCGGC-ACACACT--CTGTG----CGC-TTCGA Dichoropetalum_achaicum 10003122111012111121TCGAATCCT--GCAAATAG---CAGAATGA-CCCGCTAACTCGT--AAACAATTT-GGG-CAA--GCGT-CGGG-GG------GCCT-TGGT----CCCC-TGTCT-GCGAATCC--CTGG---TAGG-TGG--CCAC-------TCCCGGGTGG-CCACTGGC-CTGCA-AAAATCATTCGGG-CGCGGAATGCGCCAAGGA-CCTT-AAAAACTGAATT-GTAC-GTCCGTATC-CCGTT-AGCGGG---------------AAAC---GGC-GTCG-TTCCAAAA--CAC??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATCGTCTT-GCCC--GCAAA-CCACTC-AC--TCCT-GCGAA-GTTGT-GCC---GGTTTGGGGG-CGGAAACTGGCCTCCCG--TGCCTTGTC-GTG---CGGTTGGCGGAAAAGC-GAG--TCTCC---GGCG-ACGGACGTCGCG-ACATCGG-TGG--TTGT---AA--AATG-CCCTCCT-GTAGTGTCGCGCGAAT--CCTCGTC-ATCT-TAGCGA-GCTC--CGGGACCCTAA-GGCGGC-ACAGAGT-ACTCTGTGCGAGC-TTCGA Dichoropetalum_aromaticum 00110311101011300002TCGAATCCT--GCAAATAGG--CAGAATGA-CCCGCTAACTCGT--AAACAATTT-GGG-CAA--GCGT-CGGG-GG------GCCT-TGGT----CCCC-TG-CT-GCGAATCC--CTGG---TAGG-TGG--TCAC-------TCCCGGGTGG-CCACTGGC-CTGCA-AAA-TCATTCGGG-CGCGGAATGCGCCAAGGA-CCTT--AAAACTGAATT-GTAC-GTCCGAATC-CCGTT-AGCGGG---------------AAAC---GGC-GTCG-TTCCAAAA--CACAA--CGACTCTCGACAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCAC-TAGGCCG-AGGGCACGTCTGCCTGGGTGTCACGCATCGTCTT-GCCCC-GCAAA-CCACTC-AC--TCCT-GCGAA-GTTGT-GCC---GGTTTGGGGG-CGGAAACTGGCCTCCCG--TGCCTTGTC-GTG---CGGTTGGCGGAAAAGC-GAG--TCTCC---GGCG-ACGGACGTCGCG-ACATCGG-TGG--TTGT---AA--AATG-CCCTCTT-TTATTGTCGCGCGAAT--CCTCGTC-ATCT-TAGCGA-GCTC--CGGGACCCTTA-GGCGGC-ATAGAGT-ACTCTGTGCGCGC-TTCGA Dichoropetalum_carvifolia 10103102111001111121TCGAATCCT--GCAAATAG---CAGAATGA-CCCGCTAACTCGT--AAACCATTT-GGG-CAA--GCGT-CGGG-GG------CCCT-TGGT----CCCC-TGTCC-GCGAATCC--CTGG---TAGG-TGG--CCAC-------TCCCGGGTGG-CCACTGGC-CTGCA-AAA-TCATTTGGG-CGCGGAATGCGCCAAGGA-CCTT--AAAACTGAATT-GCAC-GTCTGTATC-CCGTT-AGCGGG---------------AAAC---GAC-GTCG-TTCCAAAA--CAC??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATCATCTT-GCCC--GCAAA-CCACTC-AC--TCCT-GCGAA-GTTGT-GCC---GGTTTGGGGG-CGGAAACTGGCCTCCCG--TGCCTTGTC-GTG---CGGTTGGCGGAAAAGC-GAG--TCTCC---GGCG-ACGGACGTCGCG-ACATCGG-TGG--TTGT---AA--AATG-CCCTCTT-GTATTGTCGCGGGGAT--CCTCGTC-ATCT-TAGCGA-GCTC--CAGGACCCTTA-GGCGGC-ACAGAGT-ACTCTGTGCGCGC-TTCGA Dichoropetalum_golestanicum 00100212001012110101TCGAATCCT--GCAAATAG---CAGAATGA-CCCGCTAACTCGT--AAACAATTT-GGG-CAA--GCGT-CGGG-GG------CCCT-TGGT----CCCC-TGTCT-GCGAATCC--CTGG---TAGG-TGG--CCAC-------TCCCGGGTGG-CCACTGGC-CTGCA-AAA-TCATTCGGG-CGCGGAATGCGCCAAGGA-CCTT--AAAACTGAATT-GTAC-GTCCGCATC-CCGTT-AGCGGG---------------AAAC---GGC-GTCG-TTCCAAAA--CACAA--CGACTCTCGACAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCAC-TAGGCCG-AGGGCACGTCTGCCTGGGTGTCACGCATCGTCTT-GCCC--GCAAA-CCACTC-AC--TCCT-GCGAA-GTTGT-GCC---GGTTTGGGGG-CGGAAACTGGCCTCCCG--TGCCTTGTC-GTG---CGGTTGGCGGAAAAGC-GAG--TCTCC---GGCG-ACGGACGTCGCG-ACATCGG-TGG--TTGT---AA--AAGG-CCCTCTT-GTCTTGTCGCGCGAAT--CCTCGTC-ATCT-TAGCGA-GCTC--CAGGACCCTTA-GGCGGC-ACAGAGT-ACTCTGTGCGAGC-TTCGA Dichoropetalum_paucijugum 00020111111010300002TCGAATCCT--GCAAATAGG--CAGAATGA-CCCGCTAACTCGT--AAACAATTT-GGG-CAA--GCGT-CGGG-GG------GCCT-TGGT----CCCC-TGTCT-GCTAATCC--CTGG---TAGG-TGG--TCAC-------TCCCGGGTGG-CCACTGGC-CTGCA-AAA-TCATTCGGG-CGCGGAATGCGCCAAGGA-CCTT--AAAACTGAATT-GTAC-GTCCGTATC-CCGTT-ATCGGG---------------AAAC---GAC-GTCG-TTCCAAAA--CACAA--CGACTCTCGACAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCAGAAGCCAC-TAGGCCG-AGGGCACGTCTGCCTGGGTGTCACGCATCGTCTT-GCCC--GCAAA-CCACTC-AC--TCCT-GCGAA-GTTGT-GCC---GGTTTGGGGG-AGGAAATTGGCCTCCCG--TGCCTTGTT-GTG---CGGTTGGCGGAAAAGC-GAG--TCTTC---GGCG-ATGGACGCCGCG-ACATCGG-TGG--TTGT---AA--AATG-CCCTCTT-GTATTGTCGTGCGAAT--CCTCGTC-GTCT-TAACGA-GCTC--CGGGACCCTTA-GGCGGC-ACAGAGT-ACTCTGTGCGCGC-TTTGA Dichoropetalum_pschawicum 10103102111001111121TCGAATCCT--GCAAACAG---CAGAATGA-CCCGCTAACTCGT--AAACCATTT-GGG-CAA--GCGT-CGGG-GG------CCCT-TGGT----CCCC-TGTCC-GCGAATCC--CTGG---TAGG-TGG--CCAC-------TCCCGGGTGG-CCACTGGC-CTGCA-AAA-TCATTCGGG-CGCGGAATGCGCCAAGGA-CCTT--AAAACTGAATT-GCAC-GTCCGTATC-CCGTT-AGCGGG---------------AAAC---GGC-GTCG-TTCCAAAA--CAC??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATCATCTT-GCCC--ACAAA-CCACTC-AC--TCAT-GCGAA-GTTGT-GCC---GGTTTGGGGG-CGGAAACTGGCCTCCCG--TGCCTTCTC-GTG---CGGTTGGCGGAAAAGC-GAG--TCTCC---GGCG-ACGGACGTCGCG-ACATCGG-TGG--TTGT---AA--AATG-CCCTCTT-GTATTGTCGCGGGAAT--CCTCGTC-ATCT-TAGCGA-GCTC--CAGGATCCTTA-GGCGGC-ACAGAGT-ACTCTGTGCGCGC-TTCGA Dichoropetalum_schottii 10103102111001111121TCGAATCCT--GCAAATAG---CAGAATGA-CCCGCTAACTCGT--AAACAATTT-GGG-CAA--GCGT-CGGG-GG------GCCT-TGGT----CCCC-TGTCT-GCGAATCC--CTGG---TAGG-TGG--CCAC-------TCCCGGGTGG-CCACTGGC-CTGCA-AAA-TCATTCGGG-CGCGGAATGCGCCAAGGA-CCTT-AAAAACTGAATT-GTAC-GTCCGTATC-CCGTT-AGCGGG---------------AAAC---GGC-GTCG-TTCCAAAA--CAC??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATCGTCTT-GCCC--GCAAA-CCACTC-AC--TCCT-GCGAA-GTTGT-GCC---GGTTTGGGGG-CGGAAACTGGCCTCCCG--TGCCTTGTC-GTG---CGGTTGGCGGAAAAGC-GAG--TCTCC---GGCG-ACGGACGTCGCG-ACATCGG-TGG--TTGT---AA--AATG-CCCTCTG-GTATTGTCGCGCGAAT--CCTCGTC-ATCT-TAGCGA-GCTC--CGGGACCCTTA-GGCGGC-ACAGAGT-ACTCTGTGCGCGC-TTCGA Dichoropetalum_scoparium 10200202001012111101TCGAATCCT--GCAA-TAG---CAGAATGA-CCCGCTAACTCGT--AAACAATTT-GGG-CAA--GCGT-CGGG-GG------GCCT-TGGT----CCCC-TGTCT-GCAAGTCC--CTGG---TAGG-TGG--TCAC-------TCCCGGGTGG-CCACTGGC-CTGCA-AAA-TCATTCGGG-CGCGGAATGCGCCAAGGA-CCTT--AAAACTGAATT-GTAC-GTCCGTATC-CCGTT-AGCGGG---------------AAAC---GGC-GTCG-TTCCAAAAA-CAC??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATCGTCTT-GCCC--GCAAA-CCACTC-AC--TCCT-GCGAA-GTTGT-GCC---GGTTTGGGGG-CGGAAACTGGCCTCCCG--TGCCTTGTC-GTG---CGGTTGGCGGAAAAGC-GAG--TCTCC---GGCG-ACGGACGTCGCG-ACATCGG-TGG--TTGT---AA--AATG-CCTTCTT-GTATTGTCGCGCGAAT--CCTCGTC-ATCT-TAACGA-GCTC--CGGGACCCTTA-GGCGGG--CGCAAA-ATACTCTGTGCGC-CTC-A Dichoropetalum_seseloides 00100101111012111112TCGAATCCT--GCAAATAGG--CAGAATGA-CCCGCTAACTCGT--AAACAATTT-GGG-CAA--GCGT-CGGG-GG------GCCT-TGGT----CCCC-TGTCT-GCGAATCC--CTGG---TAGG-TGG--TCAC-------TCCCGGGTGG-CCACTGGC-CTGCA-AAA-TCATTCGGG-CGCGGAATGCGCCAAGGA-CCTT--AAAACTGAATT-GTAC-GTCCGTATC-CCGTT-AGCGGG---------------AAAC---GGC-GTCG-TTCCAAAA--CACAA--CGACTCTCGACAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCAC-TAGGCCG-AGGGCACGTCTGCCTGGGTGTCACGCATCGTCTT-GCCA--GCAAA-CCACTC-AC--TCCT-GCGAA-GTTGT-GCC---GGTTTGGGGG-CGGAAACTGGCCTCCCG--TGCCTTGTC-GTG---CGGTTGGCGGAAAAGC-GAG--TCTAC---GGCG-ACGGACGTCGCG-ACATCGG-TGG--TTGT---AA--AATG-CCCTCTT-GTATTGTCGCGCGAAT--CCTCGTC-ATCC-TAGCGA-GCTC--CGGGACCCTTA-GGCGGC-ACAGAGT-ACTCTGTGCGCGC-TTCGA Ormosolenia_alpina 11011020001101011121TCGAATCCT--GCAAATAG---CAGAATGA-CCCGCTAACTCGT--AAACAATTT-GGG-CAA--GCGT-CGGG-GG------CCCT-TGGT----CCCC-TGTCT-GCGAATCC--CTGG---TAGG-TGG--CCAC-------TCCCGGGTGG-CCACCGGC-CTGCA-AAA-TCATTCGGG-CGCGGAATGCGCCAAGGA-CCTT--AAAACTGAATT-GTAC-GTCCGTATC-CCGTT-AGCGGG---------------AAAC---GGC-GTCG-TTCCAAAA--CACAA--CGACTCTCGACAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCAC-TAGGCCG-AGGGCACGTCTGCCTGGGTGTCGCGCATCGTCTT-GCCC--GCAAA-CCACTC-AC--TCCT-GCGAA-GTTGT-GCT---GGTTTGGGGG-CGGAAACTGGCCTCCCG--TGCCTTGTC-GTG---CGGTTGGCGGAAAAGC-GAG--TCTCC---GGCG-ACGGGCGTCGCG-ACATCGG-TGG--TTGT---AA--AAGG-CCCTCTT-GTCTTGTCGCGCGAAT--CCCCGTC-GTCT-TAGCGA-GCTC--CAGGACCCTTA-GGCGGC-ACAG----ACTCTGTGCGCGC-TTTGA Ormosolenia_pisidica 11011021000111111121TCGAATCCT--GCAAATAG---CAGAATGA-CCCGCTAACTCGT--AAACAATTT-GGG-CAA--GCGT-CGGG-GG------CCCT-TGGT----CCCC-TGTCT-GCGAATCC--CTGG---TAGG-TGG--CCAC-------TCCCGGGTGG-CCACTGGC-CTGCA-AAA-TCATTCGGG-CGCGGAATGCGCCAAGGA-CCTT--AAAACTGAATT-GTAC-GTCCGTATC-CCGTT-AGCGGG---------------AAAC---GGC-GTCG-TTCCAAAA--CACAA--CGACTCTCGACAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCAC-TAGGCCG-AGGGCACGTCTGCCTGGGTGTCGCGCATCGTCTT-GCCC--GCAAA-CCACTC-AC--TCCT-GCGAA-GTTGT-GCT---GGTTTGGGGG-CGGAAACTGGCCTCCCG--TGCCTTGTC-GTG---CGGTTGGCGGAAAAGC-GAG--TCTTC---GGCG-ACGGGCGTCGCG-ACATCGG-TGG--TTGT---AA--AAGG-CCCTCTT-GTCTTGTCGCGCGAAT--CCCCGTC-GTCT-TAGCGA-GCTC--CAGGACCCTTA-GGCGGC-ACAG----ACTCTGTGCGCGC-TTCGA Peucedanum_nebrodense 11012022002001211111TCGAATCCT--GCAAATAG---CAGAATGA-CCCGCTAACTCGT--AAACAATTT-GGG-CAA--GCGT-TGGG-GG------GCCT-CGGT----CCCC-TGTCT-GCGAATCC--CTGG---TAGG-TGG--CCAC-------TCCCGGGTGG-CCACTGGC-CTGCA-AAA-TCATTCGGG-CGCGGAATGCGCCAAGGA-CCTT-AAAAACTGAATT-GTAC-GTCCGTATC-CCGTT-AGCGGG---------------AAAC---GGC-GTCG-TTCCAAAA--CACAA--CGACTCTCGACAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCAC-TAGGCCG-AGGGCACGTCTGCCTGGGTGTCACGCATCGTCTT-GCCC--GCAAA-CCACTC-GC--TCCT-GCGAA-GTTGT-GCC---GGTTTGGGGG-CGGAAACTGGCCTCCCG--TGCCTTGTC-GTG---CGGTTGGTGGAAAAGC-GAG--TCTCC---GGCG-ACGGACGTCGCG-ACATCGG-TGG--TTGT---AA--AATG-CCCTCTG-GTATTGTCGCGCGAAT--CCTCGTC-ATCT-TAGCGA-GCTC--CGGGACCCTTA-GGCGGC-ACAGAGT-ACTCTGTGCGCGC-TTCGA ; END; BEGIN SETS; CHARSET Morph (CHARACTERS = Peucedanum_nebrodense) = 1-20; CHARSET ITS (CHARACTERS = Peucedanum_nebrodense) = 21-755; END; BEGIN TREES; TITLE Peucedanum_nebrodense_TB; LINK TAXA = Taxa1; TRANSLATE 1 Aethusa_cynapium, 2 Dichoropetalum_carvifolia, 3 Dichoropetalum_pschawicum, 4 Dichoropetalum_schottii, 5 Dichoropetalum_aromaticum, 6 Dichoropetalum_golestanicum, 7 Dichoropetalum_paucijugum, 8 Dichoropetalum_scoparium, 9 Dichoropetalum_seseloides, 10 Dichoropetalum_achaicum, 11 Peucedanum_nebrodense, 12 Ormosolenia_alpina, 13 Ormosolenia_pisidica; TREE PAUP_1 = [&R] (1,(((2,3),(4,((((5,7),9),(6,8)),10))),(11,(12,13)))); END;