#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on March 28, 2024; 10:14 GMT TreeBASE (cc) 1994-2008 Study reference: Haywood A., Steidinger K., Truby E., Bergquist P., Bergquist P., Adamson J., & Mackenzie L. 2003. Comparative Morphology and Molecular Phylogenetic Analyses of Three New Species of the genus Karenia (Dinophyceae) from New Zealand. Journal of Phycology, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1086] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=17; TAXLABELS Gymnodinium_cf._pulchellum Karenia_bidigitata Karenia_brevis_USA Karenia_brevis_USA2 Karenia_micrum Karenia_micrum_NZ Karenia_mikimotoi_AUS Karenia_mikimotoi_JPN Karenia_mikimotoi_JPN2 Karenia_mikimotoi_NOR Karenia_mikimotoi_NZ Karenia_mikimotoi_UK Karenia_papilionacea Karenia_selliformis Prorocentrum_micans Prorocentrum_minimum Prorocentrum_triestinum ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M140] TITLE '28S D1-D2'; LINK TAXA = Taxa1; DIMENSIONS NCHAR=727; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Gymnodinium_cf._pulchellum GAAACTAAATAGGATTCCCTCAGTAATGGCGAATGAACAGGGATCAGCTCAGCATGGAAATTGGGGCCTCTGGCCTTGAATTGTAGTCTTGAGATGGCATCGCCAGCGGAGGCGCAGATGTAAGCCTCTTGGAAAAGAGCATCAATGAGGGTGAGAGTCCCGTTTGTCATCTGCAGTCCCCCGTGCACGGCTTGCTTTCTAAGAGTCACGTTCCTTGGGATTGGAGCGCAAATTGGGTGGTAAATTTCATCT-AAAGCTAAATATTGGTTCGAGACCGATAGCAAACAAGTACCATGAGGGAAAGGTGAAAAGGACTTTGAAAAGAGAGTTAAAAGTGCCTGAAATTGCTGAAAGGGAAGCGAATGGAACCAGTTTTTCTTGGCGAG-ATTGTTGCGTGCTAATGTGATGGCTTGTTGCTTCAACGCAAGTGTTGCAGCGGGTTTTGATCTGGACGTGC-GCGGTGCTTCTTGCCTTGGGTGTCAACGTCGGTTCAGACTTGAGGAAAACTCCAGGGACATGGTAAGTCACTTC-TGGGTGACTGAAAGTGCTTGGCAGAACTCATTTCTGAACTGAAT-TCCGCATGTCTGGTCGCAGTGCTTTCACT--TCCCGTGCTTCGTTCGGAACTCTCTGGGCTCTG---------------AGCTGGGCTGGGACGTGGGGCATCTCCCTGACATCAG-TACGATGACAAAATGGTTTTATTCGACCCG Karenia_bidigitata GAAACTAAATAGGATTCCCTCAGTAATGGCGAATGAACAGGGATAAGCTCAGCATGGAAATTGGGGCCTCTGGCCTTGAATTGTAGTCTTGAGAT-GTGCTGCCAACGGAGGCGCAGATGTAAGCCTCTTGGAAAAGAGCATCAGGGAGGGTGAGAGTCCCGTGTGTCATCTGCAGTTCTCCGTGCACGGTGCATTTTCTAAGAGTCACGTTCCTCGGGATTGGAGCGCAAATTGGGTGGTAAATTTCATCT-AAAGCTAAATATTGGTTCGAGACCGATAGCAAACAAGTACCATGAGGGAAAGGTGAAAAGGACTTTGAAAAGAGAGTTAAAAGTGCCTGAAATTGCTGAAAGGGAAGCGAATGGAACCAGTTGTTCTTGGCGAGTATTGGTGTTGTCTAAGGTGATGGCTTGCCACTTCAACGCAAGTGTGGTGGCATGTTTTGAACTGGATGCGA-TACTGCTT-CTCGCCTTGCGTGTCAACGTCAGTTCATAATTGAGGAAAACTCTAGGGACATGGTAATTTGCTTC-CGGGTGACTGAATGTGCCTAGTTGAACTCATTTTTGAACTGCTC-CCTCTATGTCTGGTAGCAGTGCTCTGCGT--GTTCATCAGCACCATCATGCTGGCTCTGCCTGGCATGAGG-----------GTTGCTGGTGCCCAGAGCATGTCCTTGACATAAG-TACGATGACGAAATGGTTTTATTCGACCCG Karenia_brevis_USA GAAACTAAATAGGATTCCCTCAGTAATGGCGAATGAACAGGGATAAGCTCAGCATGGAAATTGGGGCCTCCGGCCTTGAATTGTAGTCTTGAGAT-GTGTTACCAACGGAGGCGCAGATGTAAGCCTCTTGGAAAAGAGCGTCAGGGAGGGTGAGAGTCCCGTATGTCATCTGCAGTTCTCTGTGCACGGTACATTTTCTAAGAGTCACGTTCCTCGGGATTGGAGCGCAAATTGGGTGGTAAATTTCATCT-AAAGCTAAATATTGGTTCGAGACCGATAGCAAACAAGTACCATGAGGGAAAGGTGAAAAGGACTTTGAAAAGAGAGTTAAAAGTGCCTGAAATTGCTGAAAGGGAAGCGAATGGAACCAGTTGTTCTTGGCGAGTATTGGTGTTGTCTAAGGTGATAGCTTGCCACTTCAACGCAAGTGTGGTGGCAGGTTTTGATCTGGATGCGA-TACTGCTT-CTCGCCTTGCGTGTCAACGTCAGTTCATAATTGAGGAAAACTCTAGGGACATGGTAATTTGCTTC-CGGGCGACTGAATGTCCCCAGTTGAACTCATTTTTGAACTGCTC-ACTGTGTGTCTGGTCGCACTGCTCCCGGT--GCTTGCTTGCAATCT---------TCTGCTTGGCATGAAG-----------G-TG-TAATGCCAGGAGCATGTCCTTGACATAAG-AACGATGACGAAATGGTTTTATTCGACCCG Karenia_brevis_USA2 GAAACTAAATAGGATTCCCTCAGTAATGGCGAATGAACAGGGATAAGCTCAGCATGGAAATTGGGGCCTCCGGCCTTGAATTGTAGTCTTGAGAT-GTGTTACCAACGGAGGCGCAGATGTAAGCCTCTTGGAAAAGAGCGTCAGGGAGGGTGAGAGTCCCGTATGTCATCTGCAGTTCTCTGTGCACGGTACATTTTCTAAGAGTCACGTTCCTCGGGATTGGAGCGCAAATTGGGTGGTAAATTTCATCT-AAAGCTAAATATTGGTTCGAGACCGATAGCAAACAAGTACCATGAGGGAAAGGTGAAAAGGACTTTGAAAAGAGAGTTAAAAGTGCCTGAAATTGCTGAAAGGGAAGCGAATGGAACCAGTTGTTCTTGGCGAGTATTGGTGTTGTCTAAGGTGATAGCTTGCCACTTCAACGCAAGTGTGGTGGCAGGTTTTGATCTGGATGCGA-TACTGCTT-CTCGCCTTGCGTGTCAACGTCAGTTCATAATTGAGGAAAACTCTAGGGACATGGTAATTTGCTTC-CGGGCGACTGAATGTCCCCAGTTGAACTCATTTTTGAACTGCTC-ACTGTGTGTCTGGTCGCACTGCTCCCGGT--GCTTGCTTGCAATCT---------TCTGCTTGGCATGAAG-----------G-TG-TAATGCCAGGAGCATGTCCTTGACATAAG-AACGATGACGAAATGGTTTTATTCGACCCG Karenia_micrum GAAACTAAATAGGATTCCCTCAGTAATGGCGAATGAACAGGGATAAGCTCAGCTTGGAAATTGGGCCCTCTGGGCTTGAATTGTAGTCTTTCGATGGCATTGCCAGCGGAGGCGCAGATGTAAGCCTCTTGGAAAAGAGCATCAATGAGGGTGAGAGTCCCGTTTGTCATCTGCAGTCCTCTGTTTACGGTGTGCTTTCTAAGAGTCACGTTCCTTGGGATTGGAGCGCAAATTGGGTGGTAAATTTCATCT-AAAGCTAAATATTGGTTCGAGACCGATAGCAAACAAGTACCATGAGGGAAAGGTGAAAAGGACTTTGAAAAGAGAGTTAAAAGTGCCTGAAATTGCTGAAAGGGAAGCGAATGGAACCAG-TCTACTTGGTGAG-ATTGTTGTGCGCTATTGTGATTGCTTTCTGCTTCAACGCAAGTGTTGCACTGGGTTTTGAGCATGACGCGCACTTT-GTTTCTCACCTCGTCTGTCAACGTCGGTTCAGATTTGAGGAAAACTCTAGGGACATGGTTAATTGCTCG-CGAGTGATTGAATGTGCCTGGTAGAACTCATGTCTAAACTGATT-TCCGCATGTCTGGTCGCAGTGTTCTCAT---ACCTGCGTCTGGGTTCGTGGCTTGTAGCTTCTGTTACTCGTCGCGGGCTTCTGGGCCTGGTCGTGGAGCATCTCCCTGACATTAG-TACGATGACAAAATGGTTTCATTCGACCCG Karenia_micrum_NZ GAAACTAAATAGGATTCCCTCAGTAATGGCGAATGAACAGGGATAAGCTCAGCTTGGAAATTGGGCCCTCTGGGCTTGAATTGTAGTCTTTCGATGGCATTGCCAGCGGAGGCGCAGATGTAAGCCTCTTGGAAAAGAGCATCAATGAGGGTGAGAGTCCCGTTTGTCATCTGCAGTCCTCTGTTTACGGTGTGCTTTCTAAGAGTCACGTTCCTTGGGATTGGAGCGCAAATTGGGTGGTAAATTTCATCT-AAAGCTAAATATTGGTTCGAGACCGATAGCAAACAAGTACCATGAGGGAAAGGTGAAAAGGACTTTGAAAAGAGAGTTAAAAGTGCCTGAAATTGCTGAAAGGGAAGCGAATGGAACCAG-TCTTCTTGGTGAG-ATTGTTGTGCGCTATTGTGATTGCTTTCTGCTTCAACGCAAGTGTTGCAGTGGGTTTTGAGCATGACGCGC-ACTTTGTTTCTCACCTCGTGTGTCAACGTCGGTTCAGATTTGAGGAAAACTCTAGGGACATGGTTAATTACTCG-CGAGTGATTGAATGTGCCTGGTAGAACTCATGTCTAAACTGATT-TCCGCATGTCTGGTCGCAGTGTTCTCATT--ACCTGCGTCTGGGTTCGTGGCTTGTAGCTTCTGTTACTCGTCGCGGGCTTCTGGGCCTGGTCGTGGAGCATCTCCCTGACATTAG-TACGATGACAAAATGGTTTCATTCGACCCG Karenia_mikimotoi_AUS GAAACTAAATAGGATTCCCTCAGTAATGGCGAATGAACAGGGATAAGCTCAGCATGGAAATTGGGGCCCTCGGCCTTGAATTGTAGTCTTGAGAT-GTGTTACCAACGGAGGCGCAGATGTAAGCCTCTTGGAAAAGAGCGTCAGGGAGGGTGAGAGTCCCGTATGTCATCTGCAGTTCTCTGTGCACGGTGCATGTTCTAAGAGTCACGTTCCTCGGGATTGGAGCGCAAATTGGGTGGTAAATTTCATCT-AAAGCTAAATATTGGTTCGAGACCGATAGCAAACAAGTACCATGAGGGAAAGGTGAAAAGGACTTTGAAAAGAGAGTTAAAAGTGCCTGAAATTGCTGAAAGGGAAGCGAATGGAACCAGTTGTTCTTGGTGAGTATTGGTGTTGTCTAAAGTGATGGCTTGCCACTTCAACGCAAGTGTGGTGGCAGGTTTTGATCTGGATGCGA-TACTGCTT-CTCGCCTTGCATGTCAACGTC?GTTCATAATTGAGGAAAACTCTAAGGACATGGTAATTCGCTTC-CGAGTGACTGAATGTCCTCAGTTGAACTCATTTTTGAACTGCTC-TCTGTGTGTCTGGTAGCACTGCTTCATGT--GCTTGCCTGCGATCT---------TCTGCTCTGCATGAAG-----------GTTGTTGGTGCCAGGAGCATGTCCTTGACATTAG-AACGATGACGAAATGGTTTTATTCGACCCG Karenia_mikimotoi_JPN GAAACTAAATAGGATTCCCTCAGTAATGGCGAATGAACAGGGATAAGCTCAGCATGGAAATTGGGGCCCTCGGCCTTGAATTGTAGTCTTGAGAT-GTGTTACCAACGGAGGCGCAGATGTAAGCCTCTTGGAAAAGAGCGTCAGGGAGGGTGAGAGTCCCGTATGTCATCTGCAGTTCTCTGTGCACGGTGCATGTTCTAAGAGTCACGTTCCTCGGGATTGGAGCGCAAATTGGGTGGTAAATTTCATCT-AAAGCTAAATATTGGTTCGAGACCGATAGCAAACAAGTACCATGAGGGAAAGGTGAAAAGGACTTTGAAAAGAGAGTTAAAAGTG-CTGAAATTGCTGAAAGGGAAGCGAATGGAACCAGTTGTTCTTGGTGAGTATTGGTGTTGTCTAAAGTGATGGCTTGCCACTTCAACGCAAGTGTGGTGGCAGGTTTTGATCTGGATGCGA-TACTGCTT-CTCGCCTTGCATGTCAACGTCAGTTCATAATTGAGGAAAACTCTAAGGACATGGTAATTCGCTTC-CGAGTGACTGAATGTCCTCAGTTGAACTCATTTTTGAACTGCTC-TCTGTGTGTCTGGTAGCACTGCTTCATGT--GCTTGCCTGCGATCT---------TCTGCTCTGCATGAAG-----------GTTGTTGGTGCCAGGAGCATGTCCTTGACATTAG-AACGATGACGAAATGGTTTTATTCGACCCG Karenia_mikimotoi_JPN2 GAAACTAAATAGGATTCCCTCAGTAATGGCGAATGAACAGGGATAAGCTCAGCATGGAAATTGGGGCCCTCGGCCTTGAATTGTAGTCTTGAGAT-GTGTTACCAACGGAGGCGCAGATGTAAGCCTCTTGGAAAAGAGCGTCAGGGAGGGTGAGAGTCCCGTATGTCATCTGCAGTTCTCTGTGCACGGTGCATGTTCTAAGAGTCACGTTCCTCGGGATTGGAGCGCAAATTGGGTGGTAAATTTCATCT-AAAGCTAAATATTGGTTCGAGACCGATAGCAAACAAGTACCATGAGGGAAAGGTGAAAAGGACTTTGAAAAGAGAGTTAAAAGTGCCTGAAATTGCTGAAAGGGAAGCGAATGGAACCAGTTGTTCTTGGTGAGTATTGGTGTTGTCTAAAGTGATGGCTTGCCACTTCAACGCAAGTGTGGTGGCAGGTTTTGATCTGGATGCGA-TACTGCTT-CTCGCCTTGCATGTCAACGTCAGTTCATAATTGAGGAAAACTCTAAGGACATGGTAATTCGCTTC-CGAGTGACTGAATGTCCTCAGTTGAACTCATTTTTGAACTGCTC-TCTGTGTGTCTGGTAGCACTGCTTCATGT--GCTTGCCTGCGATCT---------TCTGCTCTGCATGAAG-----------GTTGTTGGTGCCAGGAGCATGTCCTTGACATTAG-AACGATGACGAAATGGTTTTATTCGACCCG Karenia_mikimotoi_NOR GAAACTAAATAGGATTCCCTCAGTAATGGCGAATGAACAGGGATAAGCTCAGCATGGAAATTGGGGCCCTCGGCCTTGAATTGTAGTCTTGAGAT-GTGTTACCAACGGAGGCGCAGATGTAAGCCTCTTGGAAAAGAGCGTCAGGGAGGGTGAGAGTCCCGTATGTCATCTGCAGTTCTCTGTGCACGGTGCATGTTCTAAGAGTCACGTTCCTCGGGATTGGAGCGCAAATTGGGTGGTAAATTTCATCT-AAAGCTAAATATTGGTTCGAGACCGATAGCAAACAAGTACCATGAGGGAAAGGTGAAAAGGACTTTGAAAAGAGAGTTAAAAGTGCCTGAAATTGCTGAAAGGGAAGCGAATGGAACCAGTTGTTCTTGGTGAGTATTGGTGTTGTCTAAAGTGATGGCTTGCCACTTCAACGCAAGTGTGGTGGCAGGTTTTGATCTGGATGCGA-TACTGCTT-CTCGCCTTGCATGTCAACGTCAGTTCATAATTGAGGAAAACTCTAAGGACATGGTAATTCGCTTC-CGAGTGACTGAATGTCCTCAGTTGAACTCATTTTTGAACTGCTC-TCTGTGTGTCTGGTAGCACTGCTTCATGT--GCTTGCCTGCGATCT---------ACTGCTCTGCATGAAG-----------GTTGTTGGTGCCAGGAGCATGTCCTTGACATTAG-AACGATGACGAAATGGTTTTATTCGACCCG Karenia_mikimotoi_NZ GAAACTAAATAGGATTCCCTCAGTAATGGCGAATGAACAGGGATAAGCTCAGCATGGAAATTGGGGCCCTCGGCCTTGAATTGTAGTCTTGAGAT-GTGTTACCAACGGAGGCGCAGATGTAAGCCTCTTGGAAAAGAGCGTCAGGGAGGGTGAGAGTCCCGTATGTCATCTGCAGTTCTCTGTGCACGGTGCATGTTCTAAGAGTCACGTTCCTCGGGATTGGAGCGCAAATTGGGTGGTAAATTTCATCT-AAAGCTAAATATTGGTTCGAGACCGATAGCAAACAAGTACCATGAGGGAAAGGTGAAAAGGACTTTGAAAAGAGAGTTAAAAGTGCCTGAAATTGCTGAAAGGGAAGCGAATGGAACCAGTTGTTCTTGGTGAGTATTGGTGTTGTCTAAAGTGATGGCTTGCCACTTCAACGCAAGTGTGGTGGCAGGTTTTGATCTGGATGCGA-TACTGCTT-CTCGCCTTGCATGTCAACGTCAGTTCATAATTGAGGAAAACTCTAAGGACATGGTAATTCGCTTC-CGAGTGACTGAATGTCCTCAGTTGAACTCATTTTTGAACTGCTC-TCTGTGTGTCTGGTAGCACTGCTTCATGT--GCTTGCCTGCGATCT---------TCTGCTCTGCATGAAG-----------GTTGTTGGTGCCAGGAGCATGTCCTTGACATTAG-AACGATGACGAAATGGTTTTATTCGACCCG Karenia_mikimotoi_UK GAAACTAAATAGGATTCCCTCAGTAATGGCGAATGAACAGGGATAAGCTCAGCATGGAAATTGGGGCCCTCGGCCTTGAATTGTAGTCTTGAGAT-GTGTTACCAACGGAGGCGCAGATGTAAGCCTCTTGGAAAAGAGCGTCAGGGAGGGTGAGAGTCCCGTATGTCATCTGCAGTTCTCTGTGCACGGTGCATGTTCTAAGAGTCACGTTCCTCGGGATTGGAGCGCAAATTGGGTGGTAAATTTCATCT-AAAGCTAAATATTGGTTCGAGACCGATAGCAAACAAGTACCATGAGGGAAAGGTGAAAAGGACTTTGAAAAGAGAGTTAAAAGTGCCTGAAATTGCTGAAAGGGAAGCGAATGGAACCAGTTGTTCTTGGTGAGTATTGGTGTTGTCTAAAGTGATGGCTTGCCACTTCAACGCAAGTGTGGTGGCAGGTTTTGATCTGGATGCGA-TACTGCTT-CTCGCCTTGCATGTCAACGTCGGTTCATAATTGAGGAAAACTCTAAGGACATGGTAATTCGCTTC-CGAGTGACTGAATGTCCTCAGTTGAACTCATTTTTGAACTGCTC-TCTGTGTGTCTGGTAGCACTGCTTCATGT--GCTTGCCTGCGATCT---------TCTGCTCTGCATGAAG-----------GTTGTTGGTGCCAGGAGCATGTCCTTGACATTAG-AACGATGACGAAATGGTTTTATTCGACCCG Karenia_papilionacea GAAACTAAATAGGATTCCCTTAGTAATGGCGAATGAACAGGGATAA{GT}CTCAGCATGGAAATTGGGGCCTCTGGCCTTGAATTGTAGTCTTGAGAT-GTGCTGCCAACGGAGGCGCAGATGTAAGCCTCTTGGAAAAGAGCATCAGGGAGGGTGAGAGTCCCGTATGTCATCTGCAGATCTCTGTGCACGGTGCGCTTTCTAAGAGTCACGTTCCTCGGGATTGGAGCGCAAATTGGGTGGTAAATTTCATCT-AAAGCTAAATATTGGTTCGAGACCGATAGCAAACAAGTACCATGAGGGAAAGGTGAAAAGGACTTTGAAAAGAGAGTTAAAAGTGCCTGAAATTGCTGAAAGGGAAGCGAATGGAACCAGTTGTTCTTGGCTAG-ATTGGTGTTGTCTAATGTGATGGCTTGCCACTTCAACGCAAGTGTGGTGGCAGGTTTTGATCTGGATGCGA-TACTGGTTGCTTGCCTTGCGTGTCAACGTCAGTTCATAATTGAGGAAAACTCTAGGGACATGGTAATTTGCTTC-CGGGTGACTGAATGTGCCTAGTTGAACTCATTTTTGAACTGCTT-TCTGTGTGTCTGGTAGCAGTGCTCTGTGT--GCTTGTCAGCAATCTCTTGTTAG--TTACCTGGCATGAGA-----------CTTGCTGGCGCCTGGAACACATCCTTGACATAAGTTACGATGACGAAATGGTTTTATTCGACCCG Karenia_selliformis GAAACTAAATAGGATTCCCTTAGTAATGGCGAATGAACAGGGATAAGCTCAGCATGGAAATTGGGGCCTCTGGCCTTGAATTGTAGTCTTGAGAT-GTGCTACCAACGGAGGCGCAGATGTAAGCCTCTTGGAAAAGAGCGTCAGGGAGGGTGAGAGTCCCGTATGTCATCTGCAGTTCTCTGTGCACGGTACATTTTCCAAGAGTCACGTTCCTCGGGATTGGAGCGCAAATTGGGTGGTAAATTTCATCT-AAAGCTAAATATTGGTTCGAGACCGATAGCAAACAAGTACCATGAGGGAAAGGTGAAAAGGACTTTGAAAAGAGAGTTAAAAGTGCCTGAAATTGCTGAAAGGGAAGCGAATGGAACCAGTTGTTCTTGGCGAGTATTGGTGTTGTCTAAAGTGAGGGCTTGCCACTTCAGCGCAAGTGTGGTGGCAGGTTTTGATCTGGATGCGA-TACTGCAT-CTCGCCTTGCATGTCAACGTCAGTTCATAATTGAGGAAAACTCTAAGGACTTGGTAATTTGCTTC-CGGGTGACTGAATGTCTCTAGTGGAACTCATTTTTGAACTGCT--TTTGTATGTCTTGTTGCAGTGCTCTGCGT--GCTTGCCTGTGATCCGGTGCTTGCTCTGCTTGGCATG-GG-----------GTTGCTGGTGCCTGGAGCATGTCCTTGACATAAG-TACGATGACGAAATGGTTTTATTCGACCCG Prorocentrum_micans GAAACTAAATAGGATTCCCTCAGTAATGGCGAATGAACAGGGATCAGCTCAGCATGGAAATT-GGGCCCTCGGCCTTGAATTGTAGTCTCGAGAT-GCATCGCCAATGGAGGCGCAGATGTAAGCCTCTTGGAAAAGAGCATCAACGAGGGTGAGAGTCCCGTTTGTCATCTGCAGTCCCCCATGCACGGCGT-GCTTCTAAGAGTCGCGTTCCTCGGAATTGGAGCGTCAATTGGGTGGTAAATTTCATCT-CAAGCTAAATATTGGTTCGAGACCGATAGCAAACAAGTACCATGAGGGAAAGGTGAAAAGGACTTTGAAAAGAGAGTTAAAAGTGCCTGAAATTGCTGAAAGGGAAGCGAATGGAACCAGTGTTGCTTGGCGAGAGTTGTCGTACGCA------------------------------------------------CTTCGCGTG--TGGTGGT-TCTTGCCTTGTGTGTCAAGCAGCCTTCGCGATCGAGGAAAACT-CCAGGGACATGGTAGCCTACCCCTGGGTGGGTGAATGTGCTTGGTAGAACTCATTTGCGGACTGTTT-CCTTCGTGTCTGGTTGCAGTGCTGCTTGA--TCTTG----TGCGCTGG-----------GATGGAGCTCGCTCCTACAACCTCCCTTCTAAGGTCTCAGCGCTTCCCTGACA-CATAG-CGATGACTAAATGGTTCTATTCGACCCG Prorocentrum_minimum GAAACTAAATAGGATTCCCTTAGTAATGGCGAATGAACAGGGATCAGCTCAGCATGGAAATTGGGGCCCTCGGCCTTGAATTGTAGTCTCGAGAT-GTATCGCCAACGGAGGCGCAGATGTAAGCCTCTTGGAAAGGAGCATCAACGAGGGTGAGAGTCCCGTTTGTCATCTGCAGTCCCCCGTGCACGGCATACCTTCTAAGAGTCGCGTTCCTCGGAATTGGAGCGTAAATTGGGTGGTAAATTTCATCTCCAAGCTAAATATTGGTTCGAGACCGATAGCAAACAAGTACCATGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTTAAAAGTGCCTGAAATTGCTG-AAGGGAAGCGAATGGAACCAGTGTTGCTTGGCAAG-ATTGTCGGGTGCA-----------------------------------TGACG-CGCT--------------TGATCGTCTCTTGCCTTGTGTGTCAACGCCTGTTCGCGATCGAGGAAAACTCCCAGGGTCATGGTAGCTCGTCTGCGGGTGAGTGAATAGCCTTGGCAGAACTCATTTGCGGACTGTTT-CTTTCGTGTCTGGTTGCAGTGTCCTTGGC--ATTCT---GGAAGCTC----------GTCTTGGCTTGCCACT-GGCGGGGGAC-CTGGGTGACTTGGGCATTTCCCTGACA-CAAAGACGATGACTAAATGGTTCTATTCGACCCG Prorocentrum_triestinum GAAACTAAATAGGATTCCCTCAGTAATGGCGAATGAACAGGGATCAGCTCAGCATGGAAATTGGGGCCTTGGCCTTTGAATTGTAGTCTCGAGAT-GTATTGCCAACGGAGGCGCAGATGTAAGCCTCTTGGAAAAGAGCATCAACGAGGGTGAGAGTCCCGTTTGTCATCTGCAGACCCCCGTGCACGGCGTACCTTCCAAGAGTCGCGTTCCTCGGAATTGGAGCGTAAATTGGGGTGGTAAATTTCATCTGAAGCTAAATATTGGTTCGAGACCGATAGCAAACAAGTACCATGAGGGAAAGGTGAAAAGGACTTTGAAAAGAGAGTTAAAAGTGCCTGAAATTGCTGAAAGGGAAGCGAATGGAACCAGTG-CGCTTGGTGAG-ATTGTCACATGG------------CTTCCA------------------TGTGG-------------------TGGT----TCTTGCCTTGTGTGTCATTGCCAGTTTGCGTTCGAGGAAAACT-CCAGAGACATGGTAGCCTGGCCCCGGCTGGGTGAATGTGTCTGGTAGAACTCATTCGCGTACTGTTT-TCT--GTGTCTGGTTGCAGTGCACTGTGC--CATCT----GGGGGTGGCTGGAGAGGGAGTTTACTCCACTTCTTTGGCTAACTTCTGGGTGACCAGGGCACTTCCTTGACA-CATAGACGATGACTAAATGGTTCTTTTCGACCCG ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = '28S D1-D2') = N: 1-727; CODONPOSSET CodonPositions (CHARACTERS = '28S D1-D2') = N: 1-727; END; BEGIN TREES; TITLE Tb6700; LINK TAXA = Taxa1; TRANSLATE 1 Prorocentrum_triestinum, 2 Prorocentrum_minimum, 3 Prorocentrum_micans, 4 Karenia_selliformis, 5 Karenia_papilionacea, 6 Karenia_mikimotoi_UK, 7 Karenia_mikimotoi_NZ, 8 Karenia_mikimotoi_NOR, 9 Karenia_mikimotoi_JPN2, 10 Karenia_mikimotoi_JPN, 11 Karenia_mikimotoi_AUS, 12 Karenia_micrum_NZ, 13 Karenia_micrum, 14 Karenia_brevis_USA2, 15 Karenia_brevis_USA, 16 Karenia_bidigitata, 17 Gymnodinium_cf._pulchellum; TREE Fig._7 = [&R] (((((((9,11,6,8,10,7),(15,14)),4),16),5),((13,12),17)),(2,(3,1))); END;