#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 16, 2024; 15:11 GMT TreeBASE (cc) 1994-2008 Study reference: Lechat C., Crous P.W., & Groenewald J.Z. 2010. The enigma of Calonectria species occurring on leaves of Ilex aquifolium in Europe. IMA Fungus, 1(2): 101–108. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S10939] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=32; TAXLABELS Calonectria_cf._ilicicola Calonectria_citri Calonectria_colhounii_DQ190557 Calonectria_colhounii_DQ190560 Calonectria_colhounii_DQ190564 Calonectria_colombiensis Calonectria_curvispora Calonectria_ilicicola_AY725631 Calonectria_ilicicola_AY725636 Calonectria_ilicicola_AY725637 Calonectria_ilicicola_AY725639 Calonectria_ilicicola_AY725642 Calonectria_ilicicola_AY725643 Calonectria_ilicicola_AY725645 Calonectria_ilicicola_AY725646 Calonectria_ilicicola_AY725647 Calonectria_ilicicola_GU256586 Calonectria_ilicicola_GU256594 Calonectria_kyotensis_GQ267208 Calonectria_kyotensis_GQ267209 Calonectria_lauri_AY078120 Calonectria_lauri_AY078122 Calonectria_lauri_CBS_553.69 Calonectria_lauri_CBS_749.70 Calonectria_lauri_CPC_15683 Calonectria_lauri_CPC_17978 Calonectria_leucothoes_AF308465 Calonectria_leucothoes_AF308466 Calonectria_pacifica_AY725630 Calonectria_pacifica_GQ267213 Calonectria_pauciramosa Cylindrocladiella_lageniformis ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M6870] TITLE 'Beta-tubulin'; LINK TAXA = Taxa1; DIMENSIONS NCHAR=684; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Calonectria_cf._ilicicola -------------------------------------------------------------------GCGTGCCTTGGTTG---------------CTGCCCCTGAGCGTACCCCGCCGACCCG-----GTTTCGACCGCTT---C-GACAACAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGGAGGACAAGG-TTGCTGACTAT-TATTTCTTTCTCAATTCTAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTGCCCTG-----AGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAATAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACTAACTCACACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGACCCGACAACTT---------------------------------------------------------- Calonectria_citri -------------------------------------------------------------------GCGTGCCTTTGTTGTTGTTG---------CTGCCCCTGATCCTACCCCGCCGCCCCATGGGTGTTTCCACCGCTT---CGAACGACAACAAAGCCGCAGCCTCGAGAACATGGCGAGATAATCG--GGATATGA-TTGCTAACCGTCTGTTTCTTTCTCAATTATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTCACCATCTTCAACTCCGAAAAAACTTTCTCACGGCCATGTTCTCTAACTCTCGTCGATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATTTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCTGGTACCTCCGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATGTGAAAACCGCGCCGAGAACTCTCTGTGTCGAGAC-AACACAGTAAACTCACACACG-CATGTAGGCTTCTGGCAACAAGTTCGTTCCTCGTGCCGTCCTCGTCGATCTCGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCCTTCGGTCAGCTCTTCCGCCCCGACAACTT---------------------------------------------------------- Calonectria_colhounii_DQ190557 ----------------------------------------------------CATGGCTTCTGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGATTCTACCCCGCCGACCCG-----GTTTCCACCGCTT---C-GACGACAACAAAGCCGCAGCCTCACGAGCATGACGAGATA-TCG--AAACAAGATTTGCTGACCATGTGCTTCTTTTTCAATTATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGCTC-TTGTCAACTCCAACAATATTATCAC-----GAGATTTACTGACATATGTCGATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCTGGTACCTCCGAGCTCCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTATGTGAAAGCTGCTTGGTGTACCC-CTATGTCGAGAG-ACGGAACTAAACTGACAC----CATGTAGGCCTCCGGCAACAAGTTCGTTCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGCCCCGACAACTT---------------------------------------------------------- Calonectria_colhounii_DQ190560 ---------------------------------------------------TCATGGCTTCTGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGATTCTACCCCGCCGACCCG-----GTTTCCACCGCTT---C-GACGACAACAAAGCCGCAGCCTCACGAGCATGACGAGATA-TCG--AAACAAGATTTGCTGACCATGTGCTTCTTTTTCAATTATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGCTC-TTGTCAACTCCAACAATATTATCAC-----GAGATTTACTGACATATGTCGATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCTGGTACCTCCGAGCTCCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTATGTGAAAGCTGCTTGGTGTACCC-CTATGTCGAGAG-ACGGAACTAAACTGACAC----CATGTAGGCCTCCGGCAACAAGTTCGTTCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGCCCCGACAACT----------------------------------------------------------- Calonectria_colhounii_DQ190564 ---------------------------------------------------TCATGGCTTCTGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGATTCTACCCCGCCGACCCG-----GTTTCCACCGCTT---C-GACGACAACAAAGCCGCAGCCTCACGAGCATGACGAGATA-TCG--AAACAAGATTTGCTGACCATGTGCTTCTTTTTCAATTATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGCTC-TTGTCAACTCCAACAATATTATCAC-----GAGATTTACTGACATATGTCGATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCTGGTACCTCCGAGCTCCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTATGTGAAAGCTGCTTGGTGTACCC-CTATGTCGAGAG-ACGCAACTAAACTGACAC----CATGTAGGCCTCCGGCAACAAGTTCGTTCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGCCCCGACAACTT---------------------------------------------------------- Calonectria_colombiensis TTTAACAGGCGGGGATTGTAAGTTTTCCTGCCCTCGCACAGCATCATGACCTGAGCTCTTGAGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTCGACCGCTT---C-GACAACAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGGAGGACAAGG-TTGCTGACTAT-TATTTCTTCCTCAATTCTAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTGCCTTG-----AGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCTGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAATAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCCCAAACTCATACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGTCCCG----------------------------------------------------------------- Calonectria_curvispora -------------------------------------------------------------------GCGTGCCTTTGTT----------------CTGCCCCTGAGCGTACCCCCCCGCCCCG-----GTTTCGACCGCTT---C-GACAACAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGGAGGACAAGG-TTGCTGACTA--TATTTCTTTCTCAATTCTAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTGCCCTG-----AGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAATAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGTCCCGA---------------------------------------------------------------- Calonectria_ilicicola_AY725631 -----------------------------------------------------------TGAGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTCGACCGCTT---C-GACAGCAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGGAGGACAAGG-TTGCTGACTAT-TATTTCTTTCTCAATTCTAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTGCCCTG-----GGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAATAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCT-------------------------------------------------------------------------- Calonectria_ilicicola_AY725636 -------------------------------------------------------------------GCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTCGACCGCTT---C-GACAGCAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGGAGGACAAGG-TTGCTGACTAT-TATTTCTTTCTCAATTCTAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTGCCCTG-----GGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAATAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGTCCCGACAACTT---------------------------------------------------------- Calonectria_ilicicola_AY725637 -------------------------------------------------------------------GCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTCGACCGCTT---C-GACAGCAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGGAGGACAAGG-TTGCTGACTAT-TATTTCTTTCTCAATTCTAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTGCCCTG-----GGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAATAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGTCCCGACAACTT---------------------------------------------------------- Calonectria_ilicicola_AY725639 -------------------------------------------------------------------GCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTCGACCGCTT---C-GACAGCAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGGAGGACAAGG-TTGCTGACTAT-TATTTCTTTCTCAATTCTAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTGCCCTG-----GGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAATAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGTCCCGACAACTT---------------------------------------------------------- Calonectria_ilicicola_AY725642 -----------------------------------------------------------TGAGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTCGACCGCTT---C-GACAACAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGGAGGACAAGG-TTGCTGAC----TATTTCTTTCTCAATTCTAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTGCCCTG-----GGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTTGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAACAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGAGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGTCCCGACAACTT---------------------------------------------------------- Calonectria_ilicicola_AY725643 -------------------------------------------------------------------GCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTCGACCGCTT---C-GACAGCAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGGAGGACAAGG-TTGCTGACTAT-TATTTCTTTCTCAATTCTAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTGCCCTG-----GGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAATAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGTCCCGACAACTT---------------------------------------------------------- Calonectria_ilicicola_AY725645 ---------------------------------------------------AGAGCTCTTGAGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTCGACCGCTT---C-GACAGCAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGGAGGACAAGG-TTGCTGACTAT-TATTTCTTTCTCAATTCTAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTGCCCTG-----GGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAATAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCA------------------------------------------------------------------------------- Calonectria_ilicicola_AY725646 ---------------------------------------------------AGAGCTCTTGAGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTCGACCGCTT---C-GACAGCAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGGAGGACAAGG-TTGCTGACTAT-TATTTCTTTCTCAATTCTAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTGCCCTG-----GGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAATAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGG---------------------------------------------------------------------------------- Calonectria_ilicicola_AY725647 ---------------------------------------------------AGAGCTCTTGAGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTCGACCGCTT---C-GACAGCAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGGAGGACAAGG-TTGCTGACTAT-TATTTCTTTCTCAATTCTAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTGCCCTG-----GGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAATAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTC------------------------------------------------------------------------------------ Calonectria_ilicicola_GU256586 --------------ATTGTAAGTTTTCCTGCCCTCGCACAGCATCATGCCCAGAGTTCTTGAGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTCGACCGCTT---C-GACAACAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGGAGGACAAGG-TTGCTGAC----TATTTCTTTCTCAATTCTAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTGCCCTG-----GGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTTGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAACAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGAGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTT------------------------------------------------------------------------- Calonectria_ilicicola_GU256594 -----------GAGATTGTAAGTTTTCCTGCCCTCGCACAGCATCATGCCCAGAGTTCTTGAGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTCGACCGCTT---C-GACAACAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGGAGGACAAGG-TTGCTGAC----TATTTCTTTCTCAATTCTAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTGCCCTG-----GGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTTGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAACAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGAGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGTC-------------------------------------------------------------------- Calonectria_kyotensis_GQ267208 --------------ATTGTAAGTTTTCCTGCCCTCGCACAGCATCATGCCCAGAGCTCTTGAGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTCGACCGCTTCGAC-GACAACAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGAAGGACAAGG-TTGCTGACTAT-TATTTCTTTCTCAATTCTAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGATT-ATTCCAGCTTCCAAAAACTGCCTTG-----AGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAATAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGTCCCG----------------------------------------------------------------- Calonectria_kyotensis_GQ267209 --------------ATTGTAAGTTTTCCTGCCCTCGCACAGCATCATGCCCAGAGCTCTTGAGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTCGACCGCTTCGAC-GACAACAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGAAGGACAAGG-TTGCTGACTAT-TATTTCTTTCTCAATTCTAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTCCCCTG-----AGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAATAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGTCCCG----------------------------------------------------------------- Calonectria_lauri_AY078120 --------------------------------CAGCACCCATATCCCACCTCGGGTGCTCTTGAGATGCGAGCCTTTGTTGTTG---CTGCTGCTGCTGCCCCTGATTCTACCCCGCCGCCCCATGG--GTTTCCACCGCTT---CAAACGACAACAAAGCCGCAGCCTCGAGAACATGGCGATATAATCG--GGACATGA-TGGCTAACCGTGTGTTTCTTTCTCAATTATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGATCATCTTCAACTCCAAAAAAACTTTCTCACGATCGTGTTCACTGACTGTCGTCAATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATTTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACACTGGTACCTCCGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATGTGAAAACTGCACCGAGAGCTCTCTGTGTCGAGACAAACAAAGTAAACTCACACGCGTCATGTAGGCTTCTGGCAACAAGTTCGTTCCCCGTGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTTTTCGGCCAGTCCGGTGCTGGAA{AG}CAACTGGGCCAAGGGTC-------------- Calonectria_lauri_AY078122 -------------------------------GCAGCACCCATATCCCACCTCGGGTGCTCTTGAGATGCGAGCCTTTGTTGTTG---CTGCTGCTGCTGCCCCTGATTCTACCCCGCCGCCCCATGG--GTTTCCACCGCTT---CAAACGACAACAAAGCCGCAGCCTCGAGAACATGGCGATATAATCG--GGACATGA-TGGCTAACCGTGTGTTTCTTTCTCAATTATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGATCATCTTCAACTCCAAAAAAACTTTCTCACGATCGTGTTCACTGACTGTCGTCAATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATTTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACACTGGTACCTCCGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATGTGAAAACTGCACCGAGAGCTCTCTGTGTCGAGACAAACAAAGTAAACTCACACGCGTCATGTAGGCTTCTGGCAACAAGTTCGTTCCCCGTGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTTTTCGGCCAG?CCGGTGCTGGAAGCAACTGG------------------------ Calonectria_lauri_CBS_553.69 ---------------------------------------------------CGGGTGCTCTTGAGATGCGAGCCTTTGTTGTTG---CTGCTGCTGCTGCCCCTGATTCTACCCCGCCGCCCCATGG--GTTTCCACCGCTT---CAAACGACAACAAAGCCGCAGCCTCGAGAACATGGCGATATAATCG--GGACATGA-TGGCTAACCGTGTGTTTCTTTCTCAATTATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGATCATCTTCAACTCCAAAAAAACTTTCTCACGATCGTGTTCACTGACTGTCGTCAATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATTTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACACTGGTACCTCCGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATGTGAAAACTGCACCGAGAGCTCTCTGTGTCGAGACAAACAAAGTAAACTCACACGCGTCATGTAGGCTTCTGGCAACAAGTTCGTTCCCCGTGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAA------------------------------------------------------------- Calonectria_lauri_CBS_749.70 ------------------------------------------------------------------------------TTGTTGTTGCTGCTGCTGCTGCCCCTGATTCTACCCCGCCGCCCCATGG--GTTTCCACCGCTT---CAAACGACAACAAAGCCGCAGCCTCGAGAACATGGCGATATAATCG--GGACATGA-TGGCTAACCGTGTGTTTCTTTCTCAATTATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGATCATCTTCAACTCCAAAAAAACCTTCTCACGATCGTGTTCACTGACTGTCGTCAATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATTTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACACTGGTACCTCCGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATGTGAAAACTGCACCGAGAGCTCTCTGTGTCGAGACAAACAAAGTAAACTCACACGCGTCATGTAGGCTTCTGGCAACAAGTTCGTTCCCCGTGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAACTT---------------------------------------------------------- Calonectria_lauri_CPC_15683 GA------GATTGTAAGTTTTCCCTGTCCTCGCAGCACCCATATCCCACCTCGGGTGCTCTTGAGATGCGAGCCTTTGTTGTTGTTGCTGCTGCTGCTGCCCCTGATTCTACCCCGCCGCCCCATGG--GTTTCCACCGCTT---CAAACGACAACAAAGCCGCAGCCTCGAGAACATGGCGATATAATCG--GGACATGA-TGGCTAACCGTGTGTTTCTTTCTCAATTATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGATCATCTTCAACTCCAAAAAAACTTTCTCACGATCGTGTTCACTGACTGTCGTCAATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATTTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACACTGGTACCTCCGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATGTGAAAACTGCACCGAGAGCTCTCTGTGTCGAGACAAACAAAGTAAACTCACACGCGTCATGTAGGCTTCTGGCAACAAGTTCGTTCCCCGTGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTTTTCGGCCAGTCCGGTGCTGGAAACAACTGGGCCAAGGGTCACTACACTGAGGGT Calonectria_lauri_CPC_17978 -------AGATTGTAAGTTTTCCCTGTCCTCGCAGCACCCATATCCCACCTCGGGTGCTCTTGAGATGCGAGCCTTTGTTGTTGTTGCTGCTGCTGCTGCCCCTGATTCTACCCCGCCGCCCCATGG--GTTTCCACCGCTT---CAAACGACAACAAAGCCGCAGCCTCGAGAACATGGCGATATAATCG--GGACATGA-TGGCTAACCGTGTGTTTCTTTCTCAATTATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGATCATCTTCAACTCCAAAAAAACTTTCTCACGATCGTGTTCACTGACTGTCGTCAATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATTTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACACTGGTACCTCCGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATGTGAAAACTGCACCGAGAGCTCTCTGTGTCGAGACAAACAAAGTAAACTCACACGCGTCATGTAGGCTTCTGGCAACAAGTTCGTTCCCCGTGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAGCTCTTC------------------------------------------------------------------------ Calonectria_leucothoes_AF308465 -------------------------------------------------------------------GCGAGCCTTTGTTGTTGTTG---------CTGCCCCTGATCCTACCCCGCCGCCTCGGGGG-ATTTCCACCGCTT---CAAACGACAACAAAGCCGCAGCCTCGAGAACATGGCGAGATAATCG--GGATATGA-TGGCTAACCG--TGTTTCTTTCTCAATTCTAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGATCCTATTCAACCCCCA-AAAACTTTCTCGCCGCCATGTTCACTGACAGTCGTCGATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATTTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCTGGTACCTCTGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATGTGAAAATCACGCTGATAACACTCTTTGTTGAGAC-AACAAAGCGAACTCACACACGTCATGTAGGCTTCCGGCAACAAGTTCGTTCCCCGTGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGCCCTTCGGGTCAGGCTCTTTCGCCCGACAACTT---------------------------------------------------------- Calonectria_leucothoes_AF308466 -------------------------------------------------------------------GCGAGCCTTTGTTGTTGTTG---------CTGCCCCTGATCCTACCCCGCCGCCTCGGGGG-ATTTCCACCGCTT---CAAACGACAACAAAGCCGCAGCCTCGAGAACATGGCGAGATAATCG--GGATATGA-TGGCTAACCG--TGTTTCTTTCTCAATTCTAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGATCCTATTCAACCCCCA-AAAACTTTCTCGCCGCCATGTTCACTGACAGTCGTCGATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATTTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCTGGTACCTCTGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATGTGAAAATCACGCTGATAACACTCTTTGTTGAGAC-AACAAAGCGAACTCACACACGTCATGTAGGCTTCCGGCAACAAGTTCGTTCCCCGTGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCCTTCGGTCAGGCTCTTTCGCCCGACAACTT---------------------------------------------------------- Calonectria_pacifica_AY725630 -----------------------------------------------------------TGAGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTTGACCGCTT---C-GACAACAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGAAGGACAAGG-TTGCTGACTAT-TATTTCTTTCTCAATTCTAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTCCCCTG-----AGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAATAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACATGATACAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCT---------------------------------------------------------------------------- Calonectria_pacifica_GQ267213 -----------------------------------------------------------TGAGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTTGACCGCTT---C-GACAACAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGAAGGACAAGG-TTGCTGACTAT-TATTTCTTTCTCAATTCTAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTCCCCTG-----AGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAATAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACATGATACAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGTCCCGACAACT----------------------------------------------------------- Calonectria_pauciramosa -----------------------GTTTGCCTGCCCTCGCACAGCATCACCACCGGAGCTCCTGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGATTCTACCCCGCCGCCCCG-----GTTTCCACCGCTT---C-GACGACAACAAAGCCGCAGCCTCACGATCATAACGAGATA-TCA--GAACAAGA-TTGCTAACCGTGTGCTTCTTTCTCGATTATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTACTC-TTCTCAACTCCAACAAAATTCTCAC--GACGAGATTCACTGACAGTTGTCGATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATTTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCCGGTACCTCCGAGCTCCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTATGTGAAAACCACTCGAAGCACTCCCTTGACCGAGAA-GCACAAGCCAACTCACAC-CATCATGTAGGCTTCCGGCAACAAGTTCGTTCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGCCCCGACAACTTCGTTTTCGGTCAGTCCGGTGCTGGAAACAACTGG------------------------ Cylindrocladiella_lageniformis ----------------------------------------------------CAGCTTCCACTCGATACAACGCGTTGTTG---------------CTGCCCCTGATTCTACCCCGCCGAATCG-----TTTCCCACCGCCT---C-GACAACAACAAAGCTCGCGATGCCCACCCACACCATGATA-TCT--GAACATAA-TGGCTAATTTTGCG-TGTTTCTGCGAATATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTG--CATTCCTCACCTCGACAAGCCTCGTCA-----ACGGCTGCTAACGGTGTCTTGATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTTTACAACGGCAGCTCTGAGCTCCAGCTCGAGCGCATGAGCGTCTACTTCAACGAGGTACGTGACCA-------GAGCACTCTCATTTGCTGTGA-ACGATAATGT----ACTCACGCTTCATAGGCTTCTGGCAACAAGTATGTCCCTCGCGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTTTTCCGCCCCGACAACTT---------------------------------------------------------- ; END; BEGIN SETS; CHARSET allfive (CHARACTERS = 'Beta-tubulin') = 79-600; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = 'Beta-tubulin') = N: 1-684; CODONPOSSET CodonPositions (CHARACTERS = 'Beta-tubulin') = N: 1-684; END; BEGIN TREES; TITLE 'MPT obtained from a heuristic search with 100 random taxon additions of the b-tubulin sequence alignment. '; LINK TAXA = Taxa1; TRANSLATE 1 Calonectria_lauri_CPC_15683, 2 Calonectria_lauri_AY078122, 3 Calonectria_lauri_AY078120, 4 Calonectria_lauri_CBS_553.69, 5 Calonectria_lauri_CPC_17978, 6 Calonectria_lauri_CBS_749.70, 7 Calonectria_citri, 8 Calonectria_leucothoes_AF308466, 9 Calonectria_leucothoes_AF308465, 10 Calonectria_pauciramosa, 11 Calonectria_colhounii_DQ190564, 12 Calonectria_colhounii_DQ190557, 13 Calonectria_colhounii_DQ190560, 14 Calonectria_ilicicola_AY725631, 15 Calonectria_ilicicola_AY725645, 16 Calonectria_ilicicola_AY725646, 17 Calonectria_ilicicola_AY725647, 18 Calonectria_ilicicola_AY725643, 19 Calonectria_ilicicola_AY725639, 20 Calonectria_ilicicola_AY725637, 21 Calonectria_ilicicola_AY725636, 22 Calonectria_ilicicola_AY725642, 23 Calonectria_ilicicola_GU256594, 24 Calonectria_ilicicola_GU256586, 25 Calonectria_pacifica_GQ267213, 26 Calonectria_pacifica_AY725630, 27 Calonectria_kyotensis_GQ267209, 28 Calonectria_kyotensis_GQ267208, 29 Calonectria_colombiensis, 30 Calonectria_curvispora, 31 Calonectria_cf._ilicicola, 32 Cylindrocladiella_lageniformis; TREE Fig._1 = [&R] (((((((1,(2,3,4),5,6),7),(8,9)),10),(11,(12,13))),((((14,15,16,17,18,19,20,21),(22,23,24)),(((25,26),(27,28)),29,30)),31)),32); END;