#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 24, 2024; 21:12 GMT TreeBASE (cc) 1994-2008 Study reference: Alverson A., Beszteri B., Julius M.L., & Theriot E.C. 2010. Resolving the identity crisis of a model species: The marine diatom Thalassiosira pseudonana is the freshwater diatom Cyclotella nana. BMC Evolutionary Biology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S11009] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=25; TAXLABELS Conticribra_tricircularis Cyclotella_meneghiniana Spicaticribra_kingstonii Thalassiosira_brunii Thalassiosira_californica Thalassiosira_cedarkeyensis Thalassiosira_elliptipora Thalassiosira_flexuosa Thalassiosira_gessneri Thalassiosira_grunowii Thalassiosira_hyperborea Thalassiosira_kanayae Thalassiosira_lacustris Thalassiosira_marujamica Thalassiosira_orientalis Thalassiosira_perispinosa Thalassiosira_praeyabei Thalassiosira_pseudonana Thalassiosira_sp._A Thalassiosira_sp._B Thalassiosira_temperei Thalassiosira_transitoria Thalassiosira_weissflogii Thalassiosira_yabei Tryblioptychus_cocconeiformis ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M7094] TITLE Alverson_et_al_Morphology_Matrix; LINK TAXA = Taxa1; DIMENSIONS NCHAR=32; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3 4" MISSING=? GAP= -; MATRIX [ 10 20 30 ] [ . . . ] Conticribra_tricircularis 0?1011210???10102010010130000020 Cyclotella_meneghiniana 0110112121110001?000010130000000 Spicaticribra_kingstonii 0?1001210???00011000010130000020 Thalassiosira_brunii 20130000300200102110010000000100 Thalassiosira_californica 00001120302100112001110000000000 Thalassiosira_cedarkeyensis 011100021?3200112010010030002100 Thalassiosira_elliptipora 10001111302200102020010000000000 Thalassiosira_flexuosa 00001111302200102030111000000000 Thalassiosira_gessneri 0003?11241?20020101101013?000010 Thalassiosira_grunowii 00001111302200102030110000000000 Thalassiosira_hyperborea 00030001300200102010110010000000 Thalassiosira_kanayae 2003000230021010211?110010000000 Thalassiosira_lacustris 0003001241?200101011000131001010 Thalassiosira_marujamica 00020111310200101010010000000020 Thalassiosira_orientalis 0?02011131?200101010010000000020 Thalassiosira_perispinosa 00020101302200102010110020000001 Thalassiosira_praeyabei 00020111300200102010010000000000 Thalassiosira_pseudonana 0?11?1212??10000?010010130000020 Thalassiosira_sp._A 00020111300201101010010130000010 Thalassiosira_sp._B 00020111300200101010010000000000 Thalassiosira_temperei 20030001300200102110010010000000 Thalassiosira_transitoria 20130001300200102110110010100000 Thalassiosira_weissflogii 2?00111130220010?010000130000020 Thalassiosira_yabei 00101121300200102000010000010000 Tryblioptychus_cocconeiformis 200300011?0200100010030001000200 ; END; BEGIN TREES; TITLE Alverson_et_al_Tpseudonana; LINK TAXA = Taxa1; TRANSLATE 1 Thalassiosira_weissflogii, 2 Thalassiosira_sp._A, 3 Thalassiosira_sp._B, 4 Thalassiosira_brunii, 5 Thalassiosira_californica, 6 Thalassiosira_cedarkeyensis, 7 Thalassiosira_elliptipora, 8 Thalassiosira_flexuosa, 9 Thalassiosira_gessneri, 10 Thalassiosira_grunowii, 11 Thalassiosira_hyperborea, 12 Thalassiosira_kanayae, 13 Thalassiosira_lacustris, 14 Thalassiosira_marujamica, 15 Thalassiosira_orientalis, 16 Thalassiosira_perispinosa, 17 Thalassiosira_praeyabei, 18 Thalassiosira_temperei, 19 Thalassiosira_transitoria, 20 Thalassiosira_yabei, 21 Tryblioptychus_cocconeiformis, 22 Spicaticribra_kingstonii, 23 Conticribra_tricircularis, 24 Thalassiosira_pseudonana, 25 Cyclotella_meneghiniana; TREE PAUP_2 = [&R] (1,(((2,(9,13)),((3,(((((((4,(6,21)),18),19),12),11),16),(((5,(8,10)),7),20),17)),(14,15))),(((22,25),24),23))); TREE PAUP_1 = [&R] (1,(((2,(9,13)),((3,(((((((4,(6,21)),18),19),12),11),16),(((5,(8,10)),7),20),17)),14,15)),(((22,25),24),23))); TREE PAUP_8 = [&R] (1,(((2,(9,13)),((3,((((((4,(6,21)),18),12,19),11),16),(((5,(8,10)),7),20),17)),(14,15))),(((22,25),24),23))); TREE PAUP_7 = [&R] (1,(((2,(9,13)),((3,((((((4,(6,21)),18),12,19),11),16),(((5,(8,10)),7),20),17)),14,15)),(((22,25),24),23))); TREE PAUP_5 = [&R] (1,(((2,(9,13)),((3,((((((4,(6,21)),19),12,18),11),16),(((5,(8,10)),7),20),17)),14,15)),(((22,25),24),23))); TREE PAUP_6 = [&R] (1,(((2,(9,13)),((3,((((((4,(6,21)),19),12,18),11),16),(((5,(8,10)),7),20),17)),(14,15))),(((22,25),24),23))); TREE PAUP_3 = [&R] (1,(((2,(9,13)),((3,(((((((4,(6,21)),19),18),12),11),16),(((5,(8,10)),7),20),17)),14,15)),(((22,25),24),23))); TREE PAUP_4 = [&R] (1,(((2,(9,13)),((3,(((((((4,(6,21)),19),18),12),11),16),(((5,(8,10)),7),20),17)),(14,15))),(((22,25),24),23))); END;