#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 25, 2024; 13:11 GMT TreeBASE (cc) 1994-2008 Study reference: Zhang J., Hogenhout S., Nault L., Hoy C., & Miller S. 2004. Molecular and symptom analyses of phytoplasma strains from lettuce reveal a diverse population. Phytopathology, 94. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1178] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=19; TAXLABELS Acholeplama_laidlawii Acholeplasma_axanthum Aster_yellows_bolt_white Aster_yellows_phytoplasma_A_isolate_99uw111 Aster_yellows_phytoplasma_Maryland_strain_AY1 Aster_yellows_phytoplasma_bolt_distortion2_operonA Aster_yellows_phytoplasma_bolt_distortion2_operonB Aster_yellows_phytoplasma_semigeotropism Aster_yellows_phytoplasma_severe_operonA Aster_yellows_phytoplasma_severe_operonB Aster_yellows_phytoplasma_western_severe_strain Aster_yellows_phytoplasma_witches_broom_operonA Aster_yellows_phytoplasma_witches_broom_operonB Bermuda_grass_white_leaf_phytoplasma Clover_phyllody_phytoplasma_operonA Clover_phyllody_phytoplasma_operonB Epilobium_phyllody_phytoplasma Tomato_big_bud_phytoplasma Western_X_disease ; END; BEGIN TAXA; TITLE Taxa2; DIMENSIONS NTAX=19; TAXLABELS Acholeplasma_brassicae Aconitum_proliferation_phytoplasma Ash_yellows_phytoplasma Aster_yellows_phytoplasma_A_isolate_99uw111 Aster_yellows_phytoplasma_Maryland_strain_AY1 Aster_yellows_phytoplasma_Queen_Annes_lace Aster_yellows_phytoplasma_bolt_distortion2_operonA Aster_yellows_phytoplasma_bolt_distortion2_operonB Aster_yellows_phytoplasma_semigeotropism Aster_yellows_phytoplasma_severe_operonA Aster_yellows_phytoplasma_severe_operonB Aster_yellows_phytoplasma_western_severe_strain Aster_yellows_phytoplasma_white_bolt Aster_yellows_witches_broom Bermuda_grass_white_leaf_phytoplasma Clover_phyllody_phytoplasma_operonA Clover_phyllody_phytoplasma_operonB Tomato_big_bud_phytoplasma Western_X_disease ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2497] TITLE 'Fig.4 16S-23S spacer'; LINK TAXA = Taxa2; DIMENSIONS NCHAR=280; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Acholeplasma_brassicae CAAACCAATTCGTAATGAAATCA-TCATATTCAGTTTTGAAAGACTTAAG--AGTTTTTCTTGAAA-------------TAAGTTAAGGTA-------TAAAAACCCTT-------AAAAAAGGGCCTATAGCTCAGCTGGTTA--GAGCGCACGGCTGATAACCGTGAGGTCGATGGTTCGAGTC---CATTTAGGCCCACCATT--------TAACT-TGTGCACTCAGTC--AAATGAGCGTACTTTAATAACCT-ATAA-TATAGGTTGAGAT--- Aconitum_proliferation_phytoplasma AAGGA-AAC---------AATTA-TCATCTTCAGTTTTGAGAGACTTAAGAAAGTTTTTCATTTTAAAT----TGTTTGCAAATTGTATTTGCAACATTTAAATCTTTTT---AAGATTAA-GGGCCTATAGCTCAGTTGGTTA--GAGCACACGCCTGATAAGCGTGAGGTCGGTGGTTCAAGTC---CATTTAGGCCTACCATA-------ACCAAA-AATAGGCAAAATCTTAAAA-AA-GCTCTTTGAAAAGTAGATAAACGAAGGTTAAAAA--- Ash_yellows_phytoplasma AAGGTTAATC--ACATAAATTCA-TCATCTTCAGTTTTGAAACACTTAGATTGA---------AAAAA-----------TAAGTTTTTCTT------TTTTAAGC-----------ACCAAAGGGCCTATAGCTCAGTTGGTTA--GAGCACACGCCTGATAAGCGTGAGGTCGGTGGTTCAAGTC---CATTTAGGCCCACCAATAGAT----TAATATAAACGGTCCTGCT-TAAAAGAAAGTTCTTTGAAAAGTAGATAAATA-TAGCTTTTAA--- Aster_yellows_phytoplasma_A_isolate_99uw111 AAGGA-AAC---------AATTA-TCATCTTCAGTTTTGAGAGACTTAAGAAAGTTTTTCATTTTAAAT----TGTTTGCAAATTGTATTTGCAACATTTAAATCTTTTT---AAGATTAA-GGGCCTATAGCTCAGTTGGTTA--GAGCACACGCCTGATAAGCGTGAGGTCGGTGGTTCAAGTC---CATTTAGGCCCACCATA-------ACCAAA-AATAGGCAAAATCTTAAAA-AA-GCTCTTTGAAAAGTAGATAAACGAAGGTTAAAAA--- Aster_yellows_phytoplasma_Maryland_strain_AY1 AAGGA-AAC---------AATTA-TCATCTTCAGTTTTGAGAGACTTAAGAAAGTTTTTCATTGTCACT----TGCTTGCAAATTGTATTTGCAACATTTTAATCTTTTT---AAGATTAA-GGGCCTATAGCTCAGTTGGTTA--GAGCACACGCCTGATAAGCGTGAGGTCGGTGGTTCAAGTC---CATTTAGGACCACCATA-------ACCACA-AATAGGCAAAATCTTAAAA-AA-GCTCTTTGAAAAGTAGATAAACGAAGGTTAAAAA--- Aster_yellows_phytoplasma_Queen_Annes_lace AAGGA-AAC---------AATTA-TCATCTTCAGTTTTGAGAGACTTAAGAAAGTTTTTCATTTTAAAT----TGTTTGCAAATTGTATTTGCAACATTTAAATCTTTTT---AAGATTAA-GGGCCTATAGCTCAGTTGGTTA--GAGCACACGCCTGATAAGCGTGAGGTCGGTGGTTCAAGTC---CATTTAGGCCCACCATA-------ACCAAA-AATAGGCAAAATCTTAAAA-AA-GCTCTTTGAAAAGTAGATAAACGAAGGTTAAAAA--- Aster_yellows_phytoplasma_bolt_distortion2_operonA AAGGA-AAC---------AATTA-TCATCTTCAGTTTTGAGAGACTTAAGAAAGTTTTTCATTGTCACT----TGCTTGCAAATTGTATTTGCAACATTTTAATCTTTTT---AAGATTAA-GGGCCTATAGCTCAGTTGGTTA--GAGCACACGCCTGATAAGCGTGAGGTCGGTGGTTCAAGTC---CATTTAGGCCCACCATA-------ACCACA-AATAGGCAAAATCTTAAAA-AA-GCTCTTTGAAAAGTAGATAAACGAAGGTTAAAAA--- Aster_yellows_phytoplasma_bolt_distortion2_operonB AAGGA-AAC---------AATTA-TCATCTTCAGTTTTGAGAGACTTAAGAAAGTTTTTCATTGTCACT----TGCTTGCAAATTGTATTTGCAACATTTTAATCTTTTT---AAGATTAA-GGGCCTATAGCTCAGTTGGTTA--GAGCACACGCCTGATAAGCGTGAGGTCGGTGGTTCAAGTC---CATTTAGGCCCACCATA-------ACCACA-AATAGGCAAAATCTTAAAA-AA-GCTCTTTGAAAAGTAGATAAACGAAGGTTAAAAA--- Aster_yellows_phytoplasma_semigeotropism AAGGA-AAC---------AATTA-TCATCTTCAGTTTTGAGAGACTTAAGAAAGTTTTTCATTGTAACT----TGCTTGCAAATTGTATTTGCAACATTTTAATCTTTTT---AAGATTAA-GGGCCTATAGCTCAGTTGGTTA--GAGCACACGCCTGATAAGCGTGAGGTCGGTGGTTCAAGTC---CATTTAGGCCCACCATA-------ACCACA-AATAGGCAAAATCTTAAAA-AA-GCTCTTTGAAAAGTAGATAAACGAAGGTTAAAAA--- Aster_yellows_phytoplasma_severe_operonA AAGGA-AAC---------AATTA-TCATCTTCAGTTTTGAGAGACTTAAGAAAGTTTTTCATTGTAACT----TGCTTGCAAATTGTATTTGCAACATTTTAATCTTTTT---AAGATTAA-GGGCCTATAGCTCAGTTGGTTA--GAGCACACGCCTGATAAGCGTGAGGTCGGTGGTTCAAGTC---CATTTAGGCCCACCATA-------ACCACA-AATAGGCAAAATCTTAAAA-AA-GCTCTTTGAAAAGTAGATAAACGAAGGTTAAAAA--- Aster_yellows_phytoplasma_severe_operonB AAGGA-AAC---------AATTA-TCATCTTCAGTTTTGAGAGACTTAAGAAAGTTTTTCATTGTAACT----TGCTTGCAAATTGTATTTGCAACATTTTAATCTTTTT---AAGATTAA-GGGCCTATAGCTCAGTTGGTTA--GAGCACACGCCTGATAAGCGTGAGGTCGGTGGTTCAAGTC---CATTTAGGCCCACCATA-------ACCACA-AATAGGCAAAATCTTAAAA-AA-GCTCTTTGAAAAGTAGATAAACGAAGGTTAAAAA--- Aster_yellows_phytoplasma_western_severe_strain AAGGA-AAC---------AATTA-TCATCTTCAGTTTTGAGAGACTTAAGAAAGTTTTTCATTGTAACT----TGCTTGCAAATTGTATTTGCAACATTTTAATCTTTTT---AAGATTAA-GGGCCTATAGCTCAGTTGGTTA--GAGCACACGCCTGATAAGCGTGAGGTCGGTGGTTCAAGTC---CATTTAGGCCCACCATA-------ACCACA-AATAGGCAAAATCTTAAAA-AA-GCTCTTTGAAAAGTAGATAAACGAAGGTTAAAAA--- Aster_yellows_phytoplasma_white_bolt AAGGA-AAC---------AATTA-TCATCTTCAGTTTTGAGAGACTTAAGAAAGTTTTTCATTGTAACT----TGCTTGCAAATTGTATTTGCAACATTTTAATCTTTTT---AAGATTAA-GGGCCTATAGCTCAGTTGGTTA--GAGCACACGCCTGATAAGCGTGAGGTCGGTGGTTCAAGTC---CATTTAGGCCCACCATA-------ACCACA-AATAGGCAAAATCTTAAAA-AA-GCTCTTTGAAAAGTAGATAAACGAAGGTTAAAAA--- Aster_yellows_witches_broom AAGGA-AAC---------AATTA-TCATCTTCAGTTTTGAGAGACTTAAGAAAGTTTTTCATTTTAAAT----TGTTTGCAAATTGTATTTGCAACATTTAAATCTTTTT---AAGATTAA-GGGCCTATAGCTCAGTTGGTTA--GAGCACACGCCTGATAAGCGTGAGGTCGGTGGTTCAAGTC---CATTTAGGCCCACCATA-------ACCAAA-AATAGGCAAAATCTTAAAA-AA-GCTCTTTGAAAAGTAGATAAATGAAGGTTAAAAA--- Bermuda_grass_white_leaf_phytoplasma AAAGAAAATT--TTTTAAATTT--TCATCTTCAGTTTTGAAAGACTTAGTTCTAATA------AGTA-----------GTAAGTTTTTCTC-------TTTAAGAT--------AAAAGGAAGGGCCTATAGCTCAGTTGGTTA--GAGCACACGCCTGATAAGCGTGAGGTCGATGGTTCAAGTC---CATTTAGGCCCACCAACTGATCAA-TAAGGTCATCTTTCTGATTCTTAAAAAAAGTTCTTTGAAAAGTAGATAAACA-AAGTAAAATA--- Clover_phyllody_phytoplasma_operonA AAGGA-AAC---------AATTA-TCATCTTCAGTTTTGAGAGACTTAAGAAAGTTTTTCATTATAACTAACTTACTTGCAAATTGTATTTACAATATTTTAATCTTTTT---AATATTAA-GGGCCTATAGATCAGTTGGTTATAGAGTACACACCTAATAATTGTGAGGTCGGTGGTTCAAGTTACACATTTAGGCCCACCATA-------ACCACA-AATAGGCAAAATATTAAAA-AAAGCTCTTTGAAAAGTAGATAAACGAAGGTTAAAAA--- Clover_phyllody_phytoplasma_operonB AAGGA-AAC---------AATTA-TCATCTTCAGTTTTGAGAGACTTAAGAAAGTTTTTCATTATAACTAACTTACTTGCAAATTGTATTTACAATATTTTAATCTTTTT---AATATTAA-GGGCCTATAGATCAGTTGGTTATAGAGTACACACCTAATAATTGTGAGGTCGGTGGTTCAAGTTACACATTTAGGCCCACCATA-------ACCACA-AATAGGCAAAATATTAAAA-AAAGCTCTTTGAAAAGTAGATAAACGAAGGTTAAAAA--- Tomato_big_bud_phytoplasma AAGGA-AACC---AATAAAATCAATCATCTTCAGTTTTGAAAGACTTAGGCAA----------------------CT---AAGTTTTTCTT-------CGTGA-CTTC--------ACGAA-GGGCCTATAGCTCAGTTGGTTA--GAGCACACGCCTGATAAGCGTGAGGTCGGTGGTTCAAGTC---CATTTAGGCCCACCAG------------AGTTATAGGTTTCGTAAGAACACAAA-TTCTTTGAAAATTAGGTAAATAATAGTTATTT---- Western_X_disease AAGGA-AAA----AATAAAATTA-TCATCTTCAGTTTTGAAAGACTTAGAAAA----------------------TTCATAAGTTTTTCTT-----TTTTTAAGGC----------ATTAA-GGGCCTATAGCTCAGCTGGTTA--GAGCACACGCCTGATAAGCGTGAGGTCGGTGGTTCAAGTC---CATTTAGGCCCACCAGTTTATTTT-AAAAGTTATAAGCACTGTCTTAAAAAAAAGTTCTTTGAAAAGTAGATAAACA-TAG---TAAA--- ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = 'Fig.4 16S-23S spacer') = N: 1-280; CODONPOSSET CodonPositions (CHARACTERS = 'Fig.4 16S-23S spacer') = N: 1-280; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M162] TITLE Fig.3_16S_rDNA; LINK TAXA = Taxa1; DIMENSIONS NCHAR=1530; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Acholeplama_laidlawii GAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAACG-AAGCATCTTCGGATGC---TTAGTGGCGAACGGGTGAGTAACACGTAGATAACCTACCTTTAACTCGAGGATAACTCCGGGAAACTGGAGCTAATACTGGATAG----------GATGTGTGCATGA----AAAAAACACATTTAAAGATTTATCGGTTTAAGAGGGGTCTGCGGCGCATTAGTTAGTTGGTGGGGTAAGAGCCTACCAAGACGATGAATCGTAGCCGGACTGAGAGGTCTACCGGCCACATTGGGACTGAGA-ACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGGGGAAACCCTGACCGAGCAACGCCGCGTGAACGACGAAGTACTTCGGTATGTAAAGTTCTTTTATATGGGAAGAAAAATT-------AAAA----AT-----TGACGGTACCATATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGGGCGAGCGTTATCCGGATTTACTGGGCGTAAAGGGTGCGTAGGTGGTTATAAAAGTTTGTGGTGTAAGTGCAGTGCTTAACGCTGTGAGGCTATGAAAACTATATAACTAGAGTGAGACAGAGGCAAGTGGAATTCCATGTGTAGCGGTAAAATGCGTAAATATATGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGGTCTATACTGACACTGATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGAACTAAGTGTTGGCCATAAGG-TCAGTGCTGCAGTTAACGCATTAAGTTCTCCGCCTGAGTAGTACGTACGCAAGTATGAAACTCAAAGGAATTGACGGGACCCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGATACACGAAAAACCTTACCAGGTCTTGACATACT-CTGCAAAGGCTTAGAAATAAGTTCGGAGGCTAACAGATGTACAGGTGGTGCACGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATTGCTAGTTACCATCAT-TAA-GTTGGGGACTCTAGCGAGACTGCCAGTGATAAATTGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACAAACGTGATACAATGGCTGGAACAAAGAGAAGC-GATAGGGTGACCTGGAGCGAAACTCACAAAAACAGTCTCAGTTCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGCAAATCAGCATGTTGCGGTGAATACGTTCTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTGGGCAATACCCAACGCCGGTGGCCTAACC-CG-AAAGGGAGGGAGCCGTCTAAGGTAGGGTCCATGATTGGGGTTAAGTCGTAACAAGGTATCCCTACGGGAACGTGGGGATGGAT Acholeplasma_axanthum ---------------GCTCAGGATGAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAACGAGAGTGC------TTGCACTCTAGTGGCGAACGGGTGAGTAACACGTAGGTAACCTACCCCAAAGATGAGGATAACAGTTGGAAACGATTGCTAATACTCAATAGTTAATAGGAAGGCATCTTCTTATTAT-TAAAGATCCGT------ATGGATTACTTTGGGAGGGACCTGCGTCGCATTAGCTAGTTGGTGAGGTAGTAGCTCACCAAGGCGATGATGCGTAGCCGGACTGAGAGGTTGAACGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGGGGAAACCCTGACCGAGCAACGCCGCGTGAATGAAGAAGCACTTAGGTGCGTAAAATTCTTTTATTAGGGAAGAATAGCTAGTATAGGAAATGATATTAGTGTGACGGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGAGTAGGCGGCTACTTAAGTTTGAGGTATAAGCACAGTGCTTAACGCTGTGAGGCTTTGAAAACTGGGTAGCTAGAGTTAGATAGAGGCAAGTGGAATTCCATGTGTAGCGGTAAAATGCGTAAATATATGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGGTCTATACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAGTGTCGG--AAGAAT-TCGGTGCTGTAGTTAACGCAATAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAACTCAAAGGAATTGACGGGACCCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGATACGCGAAGAACCTTACCAGGTCTTGACAT-CCCCTGCAAAGCTATGGAGACATAGT-GGAGGTTATCAGGGTGACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTCGGTTAAGTCCGGTAACGAGCGCAACCCTCGTTGTTAGTTGCCATCAT-TAA-GTTGGGGACTCTAACAAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACAAACGTGATACAATGGCTGAAACAAAGGGAAGC-GAAAGGGTGACCTGGAGCAAAACTCATAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGCTGGAATCGCTAGTAATCGCGAATCAGAACGTCGCGGTGAATACGTTCTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTCAGCAATACCCAAAACCGGTGGCCTAACCT-GCAA-AGGAGGGAGCCGTCTAAGGTAGGGTTGATGATTGGGGTTAAGTCGTAACAAGGTATCCCTACCGGAAGGTGGGGATGGAT Aster_yellows_bolt_white AAGAGTTTGATCCTGGCTCAGGATTAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAACGGAAGTTTAAGCAATTAAACTTTAGTGGCGAACGGGTGAGTAACGCGTAAGCAATCTGCCCCTAAGACGAGGATAACAGTTGGAAACGACTGCTAAGACTGGATAGGAGACAAGAGGGCATCTTCTTGTTTTTAAAAGACCTA--GCAATAGGTAT-GCTTAGGGAGGAGCTTGCGTCACATTAGTTAGTTGGTGGGGTAAAGGCCTAACAAGACTATGATGTGTAGCCGGGCTGAGAGGTTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTATTTCGGTACGTAAAGTTCTTTTATTAGGGAAGAATAAATG--ATGGAAAA----ATCATTCTGACGGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGTTTATGGTCTAAGTGCAATGCTCAACATTGTGATGCTATAAAAACTGTTTAGCTAGAGTAAGATAGAGGCAAGTGGAATTCCATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACACCAGTAGCGAAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAACGTTGG--GTAAAA-CCAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGGTACCCGAAAAACCTCACCAGGTCTTGACATGCTTCTGCAAAGCTGTAGAAACACAGT-GGAGGTTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATTGTTAGTTGCCAGCACGTAATGGTGGGGACTTTAGCAAGACTGCCAGTGATAAATTGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAAAGGGTAGCTGAAGCGCAAGTTTTTGGCGAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTTCTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTGGTAATACCCAAAGCCGGTGGCCTAACTTCGCAAGAAGAGGGAACCGTCTAAGGTAGGGTCGATGATTGGGGTTAAGTCGTAACAAGGTATCCCTACCGGAAGGTGGGGATGGAT Aster_yellows_phytoplasma_A_isolate_99uw111 ----GTTTGATCCTGGCTCAGGATTAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAACGGAAGTTTAATCAATTAAACTTTAGTGGCGAACGGGTGAGTAACGCGTAAGCAATCTACCCCTAAGACGAGGATAACAGTTGGAAACGACTGCTAAGACTGGATAGTAGACAAGAAGGCATCTTCTTGTTTTTAAAAGACCTA--TTAATAGGTAT-GCTTAGGGAGGAGCTTGCGTCACATTAGTTAGTTGGTGGGGTAAAGGCCTACCAAGACTATGATGTGTAGCCGGGCTGAGAGGTTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTATTTCGGTACGTAAAGTTCTTTTATTAGGGAAGAATAAATG--ATGGAAAA----ATCATTCTGACGGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCTGTTAAATAAGTTTATGGTCTAAGTGCAATGCTCAACATTGTGATGCTATAAAAACTGTTTAGCTAGAGTAAGATAGAGGCAAGTGGAATTCCATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACACCAGTAGCGAAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAACGTTGG--GTAAAA-CCAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGGTACCCGAAAAACCTCACCAGGTCTTGACATGCTTCTGCAAAGCTGTAGAAACACAGT-GGAGGTTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATTGTTAGTTGCCAGCACGTAATGGTGGGGACTTTAGCAAGACTGCCAGTGATAAATTGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGACCTGG-CTACAAACGTGATACAATGGCTGTTACAAAGGGTAGCTGAAACGCAAGTTTTTGGCGAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTTCTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTGGCAATACCCAAAACCGGTGGCCTAACTTCGCAAGAAGAGGGAACCGTCTAAGGTAGGGTCGATGATTGGGGTTAAGTCGTAACAAGGTATCCCTACCGGAAGGTGGGGATGGAT Aster_yellows_phytoplasma_Maryland_strain_AY1 AAGAGTTTGATCCTGGCTCAGGATTAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAACGGAAGTTTAAGCAATTAAACTTTAGTGGCGAACGGGTGAGTAACGCGTAAGCAATCCGCCCCTAAGACGAGGATAACAGTTGGAAACGACTGCTAAGACTGGATAGGAGACAAGAAGGCATCTTCTTGTTTTTAAAAGACCTA--GCAATAGGTAT-GCTTAGGGAGGAGCTTGCGTCACATTAGTTAGTTGGTGGGGTAAAGGCCTACCAAGACTATGATGTGTAGCCGGGCTGAGAGGTTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTATTTCGGTACGTAAAGTTCTTTTATTAGGGAAGAATAAATG--ATGGAAAA----ATCATTCTGACGGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGTTTATGGTCTAAGTGCAATGCTCAACATTGTGATGCTATAAAAACTGTTTAGCTAGAGTAAGATAGAGGCAAGTGGAATTCCATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACACCAGTAGCGAAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAACGTTGG--GTAAAA-CCAGTGTTGAAGTTAACACATTAAGTAATCCGCCTGAGTAGTACGTACGCAAGTATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGGTACCCGAAAAACCTCACCAGGTCTTGACATGCTTCTGCAAAGCTGTAGAAACACAGT-GGAGGTTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATTGTTAGTTACCAGCACGTAATGGTGGGGACTTTAGCAAGACTGCCAGTGATAAATTGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAAAGGGTAGCTGAAGCGCAAGTTTTTGGCGAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTTCTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTGGCAATACCCAAAGCCGGTGGCCTAACTTCGCAAGAAGAGGGAACCGTCTAAGGTAGGGTCGATGATTGGGGTTAAGTCGTAACAAGGTATCCCTACCGGAAGGTGGGGATGGAT Aster_yellows_phytoplasma_bolt_distortion2_operonA AAGAGTTTGATCCTGGCTCAGGATTAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAACGGAAGTTTAAGCAATTAAACTTTAGTGGCGAACGGGTGAGTAACGCGTAAGCAATCTGCCCCTAAGACGAGGATAACAGTTGGAAACGACTGCTAAGACTGGATAGGAGACAAGAAGGCATCTTCTTGTTTTTAAAAGACCTA--GCAATAGGTAT-GCTTAGGGAGGAGCTTGCGTCACATTAGTTAGTTGGTGGGGTAAAGGCCTACCAAGACTATGATGTGTAGCCGGGCTGAGAGGTTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTATTTCGGTACGTAAAGTTCTTTTATTAGGGAAGAATAAATG--ATGGAAAA----ATCATTCTGACGGTACCCAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTGATACATAGGGGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGTTTATGGTCTAAGTGCAATGCTCAACATTGTGATGCTATAAAAACTGTTTAGCTAGAGTAAGATAGAGGCAAGTGGAATTCCATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACACCAGTAGCGAAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAACGTTGG--GTAAAA-CCAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGGTACCCGAAAAACCTCACCAGGTCTTGACATGCTTCTGCAAAGCTGTAGAAACACAGT-GGAGGTTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATTGTTAGTTACCAGCACGTAATGGTGGGGACTTTAGCAAGACTGCCAGTGATAAATTGGAGGAAGGTGGGGACGACGTCAAATCAACATGCCCCTTATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAAAGGGTAGCTGAAGCGCAAGTTTTTGGCGAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGCTCTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTGGCAATACCCAAAGCCGGTGGCCTAACTTCGCAAGAAGAGGGAACCGTCTAAGGTAGGGTCGATGATTGGGGTTAAGTCGTAACAAGGTATCCCTACCGGAAGGTGGGGATGGAT Aster_yellows_phytoplasma_bolt_distortion2_operonB AAGAGTTTGATCCTGGCTCAGGATTAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAACGGAAGTTTAAGCAATTAAACTTTAGTGGCGAACGGGTGAGTAACGCGTAAGCAATCTGCCCCTAAGACGAGGATAACAGTTGGAAACGACTGCTAAGACTGGATAGGAGACAAGAAGGCATCTTCTTGTTTTTAAAAGACCTA--GCAATAGGTAT-GCTTAGGGAGGAGCTTGCGTCACATTAGTTAGTTGGTGGGGTAAAGGCCTACCAAGACTATGATGTGTAGCCGGGCTGAGAGGTTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTATTTCGGTACGTAAAGTTCTTTTATTAGGGAAGAATAAATG--ATGGAAAA----ATCATTCTGACGGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGTTTATGGTCTAAGTGCAATGCTCAACATTGTGATGCTATAAAAACTGTTTAGCTAGAGTAAGATAGAGGCAAGTGGAATTCCATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACACCAGTAGCGAAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAACGTTGG--GTAAAA-CCAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGGTACCCGAAAAACCTCACCAGGTCTTGACATGCTTCTGCAAAGCTGTAGAAACACAGT-GGAGGTTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATTGTTAGTTACCAGCACGTAATGGTGGGGACTTTAGCAAGACTGCCAGTGATAAATTGGAGGAAGGTGGGGACGACGTCAAGTCATCATGCCCCTTATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAAAGGGTAGCTGAAGCGCAAGCTTTTGGCGAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTTCTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTGGCAATACCCAAAGCCGGTGGCCTAACTTCGCAAGAAGAGGGAACCGTCTAAGGTAGGGTCGATGATTGGGGTTAAGTCGTAACAAGGTATCCCTACCGGAAGGTGGGGATGGAT Aster_yellows_phytoplasma_semigeotropism AAGAGTTTGATCCTGGCTCAGGATTAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAACGGAAGTTTAAGCAATTAAACTTTAGTGGCGAACGGGTGAGTAACGCGTAAGCAATCTGCCCCTAAGACGAGGATAACAGTTGGAAACGACTGCTAAGACTGGATAGGAGACAAGAAGGCATCTTCTTGTTTTTAAAAGACCTA--GCAATAGGTAT-GCTTAGGGAGGAGCTTGCGTCACATTAGTTAGTTGGTGGGGTTAAGGCCTACCAAGACTAT-ATGTGTAGCCGGTCTGAGAGGTTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTATTTCGGTACGTAAAGTTCTTTTATTAGGGAAGAATAAATG--ATGGAAAA----ATCATTCTGACGGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGTTTATGGTCTAAGTGCAATGCTCAACATTGTGATGCTATAAAAACTGTTTAGCTAGAGTAAGATAGAGGCAAGTGGAATTCCATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACACCAGTAGCGAAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAACGTTGG--GTAAAA-CCAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGGTACCCGAAAAACCTCACCAGGTCTTGACATGCTTCTGCAAAGCTGTAGAAACACAGT-GGAGGTTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATTGTTAGTTACCAGCACGTAATGGTGGGGACTTTAGCAAGACTGCCAGTGATAAATTGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAAAGGGTAGCTGAAGCGCAAGTTTTTGGCGAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTTCTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTGGCAATACCCAAAGCCGGTGGCCTAACTTCGCAAGAAGAGGGAACCGTCTAAGGTAGGGTCGATGATTGGGGTTAAGTCGTAACAAGGTATCCCTACCGGAAGGTGGGGATGGAT Aster_yellows_phytoplasma_severe_operonA AAGAGTTTGATCCTGGCTCAGGATTAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAACGGAAGTTTAAGCAATTAAACTTTAGTGGCGAACGGGTGAGTAACGCGTAAGCAATCTGCCCCTAAGACGAGGATAACAGTTGGAAACGACTGCTAAGACTGGATAGGAGACAAGAGGGCATCTTCTTGTTTTTAAAAGACCTA--GCAATAGGTAT-GCTTAGGGAGGAGCTTGCGTCACATTAGTTAGTTGGTGGGGTAAAGGCCTAACAAGACTATGATGTGTAGCCGGGCTGAGAGGTTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTATTTCGGTACGTAAAGTTCTTTTATTAGGGAAGAATAAATG--ATGGAAAA----ATCATTCTGACGGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGTTTATGGTCTAAGTGCAATGCTCAACATTGTGATGCTATAAAAACTGTTTAGCTAGAGTAAGATAGAGGCAAGTGGAATTCCATGTGTAGTGGTAAAGTGCGTAAATATATGGAGGAACACCAGTAGCGAAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAACGTTGG--GTAAAA-CCAGTGTTGAGGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGGTACCCGAAAAACCTCACCAGGTCTTGACATGCTTCTGCAAAGCTGTAGAAACACAGT-GGAGGTTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATTGTTAGTTACCAGCACGTAATGGTGGGGACTTTAGCAAGACTGCCAGTGATAAATTGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAAAGGGTAGCTGAAGCGCAAGTTTTTGGCGAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTTCTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTGGTAATACCCAAAGCCGGTGGCCTAACTTCGCAAGAAGAGGGAACCGTCTAAGGTAGGGTCGATGATTGGGGTTAAGTCGTAACAAGGTATCCCTACCGGAAGGTGGGGATGGAT Aster_yellows_phytoplasma_severe_operonB AAGAGTTTGATCCTGGCTCAGGATTAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAACGGAAGTTTAAGCAATTAAACTTTAGTGGCGAACGGGTGAGTAACGCGTAAGCAATCTGCCCCTAAGACGAGGATAACAGTTGGAAACGACTGCTAAGACTGGATAGGAGACAAGAGGGCATCTTCTTGTTTTTAAAAGACCTA--GCAATAGGTAT-GCTTAGGGAGGAGCTTGCGTCACATTAGTTAGTTGGTGGGGTAAAGGCCTAACAAGACTATGATGTGTAGCCGGGCTGAGAGGTTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTATTTCGGTACGTAAAGTTCTTTTATTAGGGAAGAATAAATG--ATGGAAAA----ATCATTCTGACGGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGTTTATGGTCTAAGTGCAATGCTCAACATTGTGATGCTATAAAAACTGTTTAGCTAGAGTAAGATAGAGGCAAGTGGAATTCCATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACACCAGTAGCGAAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAACGTTGG--GTAAAA-CCAGTGTTGAAGTTAACACATTGAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGGTACCCGAAAAACCTCACCAGGTCTTGACATGCTTCTGCAAAGCTGTAGAAACACAGT-GGAGGTTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATTGTTAGTTACCAGCACGTAATGGTAGGGACTTTAGCAAGACTGCCGGTGATAAATTGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAAAGGGTAGCTGAAGCGCAAGTTTTTGGCGAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTTCTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTGGTAATACCCAAAGCCGGTGGCCTAACTTCGCAAGAAGAGGGAACCGTCTAAGGTAGGGTCGATGATTGGGGTTAAGTCGTAACAAGGTATCCCTACCGGAAGGTGGGGATGGAT Aster_yellows_phytoplasma_western_severe_strain AAGAGTTTGATCCTGGCTCAGGATTAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAACGGAAGTTTAAGCAATTAAACTTTAGTGGCGAACGGGTGAGTAACGCGTAAGCAATCTGCCCCTAAGACGAGGATAACAGTTGGAAACGACTGCTAAGACTGGATAGGAGACAAGAGGGCATCTTCTTGTTTTTAAAAGACCTA--GCAATAGGTAT-GCTTAGGGAGGAGCTTGCGTCACATTAGTTAGTTGGTGGGGTAAAGGCCTAACAAGACTATGATGTGTAGCCGGGCTGAGAGGTTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTATTTCGGTACGTAAAGTTCTTTTATTAGGGAAGAATAAATG--ATGGAAAA----ATCATTCTGACGGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGTTTATGGTCTAAGTGCAATGCTCAACATTGTGATGCTATAAAAACTGTTTAGCTAGAGTAAGATAGAGGCAAGTGGAATTCCATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACACCAGTAGCGAAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAACGTTGG--GTAAAA-CCAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGGTACCCGAAAAACCTCACCAGGTCTTGACATGCTTCTGCAAAGCTGTAGAAACACAGT-GGAGGTTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATTGTTAGTTACCAGCACGTAATGGTGGGGACTTTAGCAAGACTGCCAGTGATAAATTGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAAAGGGTAGCTGAAGCGCAAGTTTTTGGCGAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTTCTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTGGTAATACCCAAAGCCGGTGGCCTAACTTCGCAAGAAGAGGGAACCGTCTAAGGTAGGGTCGATGATTGGGGTTAAGTCGTAACAAGGTATCCCTACCGGAAGGTGGGGATGGAT Aster_yellows_phytoplasma_witches_broom_operonA AAGAGTTTGATCCTGGCTCAGGATTAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAACGGAAGTTTAATCAATTAAACTTTAGTGGCGAACGGGTGAGTAACGCGTAAGCAATCTACCCCTAAGACGAGGATAACAGTTGGAAACGACTGCTAAGACTGGATAGTAGACAAGAAGGCATCTTCTTGTTTTTAAAAGACCTA--TTAATAGGTAT-GCTTAGGGAGGAGCTTGCGTCACATTAGTTAGTTGGTGGGGTAAAGGCCTACCAAGACTATGATGTGTAGCCGGGCTGAGAGGTTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTATTTCGGTACGTAAAGTTCTTTTATTAGGGAAGAATAAATG--ATGGAAAA----ATCATTCTGACGGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCTGTTAAATAAGTTAATGGTCTAAGTGCAATGCTCAACATTGTGATGCTATAAAAACTGTTTAGCTAGAGTAAGATAGAGGCAAGTGGAATTCCATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACACCAGTAGCGAAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAACGTTGG--GTAAAA-CCAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGGTACCCGAAAAACCTCACCAGGTCTTGACATGCTTCTGCAAAGCTGTAGAAACACAGT-GGAGGTTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATTGTTAGTTGCCAGCACGTAATGGTGGGGACTTTAGCAAGACTGCCAGTGATAAATTGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAAAGGGTAGCTGAAACGCAAGTTTTTGGCGAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTTCTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTGGCAATACCCAAAACCGGTGGCCTAACTTCGCAAGAAGAGGGAACCGTCTAAGGCAGGGTCGATGATTGGGGTTAAGTCGTAACAAGGTATCCCTACCGGAAGGTGGGGATGGAT Aster_yellows_phytoplasma_witches_broom_operonB AAGAGTTTGATCCTGGCTCAGGATTAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAACGGAAGTTTAAGCAATTAAACTTTAGTGGCGAACGGGTGAGTAACGCGTAAGCAATCTGCCCCTAAGACGAGGATAACAGTTGGAAACGACTGCTAAGACTGGATAGTAGACAAGAAGGCATCTTCTTGTTTTTAAAAGACCTA--TTAATAGGTAT-GCTTAGGGAGGAGCTTGCGTCACATTAGTTAGTTGGTGGGGTAAAGGCCTACCAAGACTATGATGTGTAGCCGGGCTGAGAGGTTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTATTTCGGTACGTAAAGTTCTTTTATTAGGGAAGAATAAATG--ATGGAAAA----ATCATTCTGACGGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCTGTTAAATAAGTTTATGGTCTAAGTGCAATGCTCAACATTGTGATGCTATAAAAACTGTTTAGCTAGAGTAAGATAGAGGCAAGTGGAATTCCATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACACCAGTAGCGAAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAACGTTGG--GTAAAA-CCAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGGTACCCGAAAAACCTCACCAGGTCTTGACATGCTTCTGCAAAGCTGTAGAAACACAGT-GGAGGTTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATTGTTAGTTGCCAGCACGTAATGGTGGGGACTTTAGCAAGACTGCCAGTGATAAATTGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAAAGGGTAGCTGAAACGCAAGTTTTTGGCGAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTTCTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTGGCAATACCCAAAACCGGTGGCCTAACTTCGCAAGAAGAGGGAACCGTCTAAGGTAGGGTCGATGATTGGGGTTAAGTCGTAACAAGGTATCCCTACCGGAAGGTGGGGATGGAT Bermuda_grass_white_leaf_phytoplasma AAGAGTTTGATCCTGGCTCAGGATTAACGCTGGCGGCGTGCTTAATACATGCAAGTCGAACGGAAATCT------TCGGATTTTAGTGGCGAACGGGTGAGTAACACGTAAGTAACCTGCCTTTAAGACGAGGATAACAATTGGAAACAATTGCTAAGACTGGATAGGAAATTAGAAGGCATCTTTTAATTTTTAAAAGACCTTTTTCGAAAGGTAT-ACTTAAAGAGGGGCTTGCGGCACATTAGTTAGTTGGTAGGGTAAAAGCCTACCAAGACCATGATGTGTAGCTGGACTGAGAGGTTGAACAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTATTTCGGTATGTAAAGTTCTTTTATTGAAGAAGAAAAAATA--GTGGAAAA----ACTATCTTGACGATATTCAATGAATAAGCCCCGGCAAACTATGTGCCAGCAGCCGCGGTAATACATAGGGGGCGAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTTGGTAAGTCTATAGTTTAATTTCAGTGCTTAACACTGTTCTGCTATAGAAACTATCAGACTAGAGTGAGATAGAGGCAAGTGGAATTCCATGTGTAGCGGTAAAATGCGTAAATATATGGAGGAACACCAGAGGCGTAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAGTGTCGG--GGAAAC-TCGGTACTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGATACACGAAAAACCTTACCAGGTCTTGACATACT-CTGCAAAGCTATAGCAATATAGT-GGAGGTTATCAGGGATACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTAGGTTAAGTCCTAAAACGAGCGCAACCCTTGTCACTAGTTGCCAGCATGTTATGATGGGCACTTTAGTGAGACTGCCAATGAAAAATTGGAGGAAGGTGAGGATCACGTCAAATCATCATGCCCCTTATGATCTGGGCTACAAACGTGATACAATGGCTGTTACAAAGAGTAGCTAAAACGCGAGTTTATAGCCAATCTCATAAAAGCAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTTCTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTGGTAATACTCAAAAACGGTAGCCTAACTTCTTCGGAAGAGGGAACTGTCTAAGGTAGGATCGATGATTGGGGTTAAGTCGTAACAAGGTATCCCTACCGGAAGGTGGGGATGGAT Clover_phyllody_phytoplasma_operonA AAGAGTTTGATCCTGGCTCAGGATTAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAACGGAAGTTTAAGCAATTAAACTTTAGTGGCGAACGGGTGAGTAACGCGTAAGCAATCTGCCCCTAAGACGAGGATAACAGTTGGAAACGACTGCTAAGACTGGATAGGAGACAAGAAGGCATCTTTTTGTTTTTAAAAGACCTA--GCAATAGGTAT-GCTTAGGGAGGAGCTTGCGTCACATTAGTTAGTTGGTGGGGTAAAGGCTTACCAAGACTATGATGTGTAGCCGGGCTGAGAGGTTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTATTTCGGTACGTAAAGTTCTTTTATTAGGGAAGAATAAATG--ATGGAAAA----ATCATTCTGACGGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGTTTATGGTCTAAGTGCAATGCTTAACATTGTGATGCTATAAAAACTGTTTAGCTAGAGTAAGATAGAGGCAAGTGGAATTCCATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACACCAGTAGCGAAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAATGTTGG--GTAAAA-CCAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGGTACCCGAAAAACCTCACCAGGTCTTGACATGCTTCTGCAAAGCTGTAGAAACACAGT-GGAGGTTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATTGTTAGTTGCCAGCACGTAATGGTGGGGACTTTAGCAAGACTGCCAGTGATAAATTGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAAAGGGTAGCTGAAACGTAAGTTTTTGGCGAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTTCTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTGGCAATACCCAAAGCCGGTGGCCTAACTTCGCAAGAAGAGGGAACCGTCTAAGGTAGGGTCGATGATTGGGGTTAAGTCGTAACAAGGTATCCCTACCGGAAGGTGGGGATGGAT Clover_phyllody_phytoplasma_operonB AAGAGTTTGATCCTGGCTCAGGATTAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAACGGAAGTTTAAGCAATTAAACTTTAGTGGCGAACGGGTGAGTAACGCGTAAGCAATCTGCCCCTAAGACGAGGATAACAGTTGGAAACGACTGCTAAGACTGGATAGGAGACAAGAAGGCATCTTTTTGTTTTTAAAAGACCTA--GCAATAGGTAT-GCTTAGGGAGGAGCTTGCGTCACATTAGTTAGTTGGTGGGGTAAAGGCCTACCAAGACTATGATGTGTAGCCGGGCTGAGAGGTTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTATTTCGGTACGTAAAGTTCTTTTATTAGGGAAGAATAAATG--ATGGAAAA----ATCATTCTGACGGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGTTTATGGTCTAAGTGCAATGCTTAACATTGTGATGCTATAAAAACTGTTTAACTAGAGTAAGATAGAGGCAAGTGGAATTCCATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACACCAGTAGCGAAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAATGTTGG--GTAAAA-CCAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGGTACCCGAAAAACCTCACCAGGTCTTGACATGCTTCTGCAAAGCTGTAGAAACACAGT-GGAGGTTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATTGTTAGTTGCCAGCACGTAATGGTGGGGACTTTAGCAAGACTGCCAGTGATAAATTGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAAAGGGTAGCTGAAACGTAAGTTTTTGGCGAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTTCTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTGGCAATACCCAAAGCCGGTGGCCTAACTTCGCAAGAAGAGGGAACCGTCTAAGGTAGGGTCGATGATTGGGGTTAAGTCGTAACAAGGTATCCCTACCGGAAGGTGGGGATGGAT Epilobium_phyllody_phytoplasma AAGAGTTTGATCCTGGCTCAGGATTAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAACGGAAGTTTAAGCAATTAAACTTTAGTGGCGAACGGGTGAGTAACGCGTAAGCAATCTGCCCCTAAGACGAGGATAACAGTTGGAAACGACTGCTAAGACTGGATAGGAGACAAGAAGGCATCTTCTTGTTTTTAAAAGACCTA--GCAATAGGTAT-GCTTAGGGAGGAGCTTGCGTCACATTAGTTAGTTGGTGGGGTAAAGGCCTACCAAGACTATGATGTGTAGCCGGGCTGAGAGGTTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTATTTCGGTACGTAAAGTTCTTTTATTAGGGAAGAATAAATG--ATGGAAAA----ATCATTCTGACGGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGTTTATGGTCTAAGTGCAATGCTCAACATTGTGATGCTATAAAAACTGTTTAGCTAGAGTAAGATAGAGGCAAGTGGAATTCCATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACACCAGTAGCGAAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAACGTTGG--GTAAAA-CCAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGGTACCCGAAAAACCTCACCAGGTCTTGACATGCTTCTGCAAAGCTGTAGAAACACAGT-GGAGGTTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATTGTTAGTTACCAGCACGTAATGGTGGGGACTTTAGCAAGACTGCCAGTGATAAATTGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAAAGGGTAGCTGAAGCGCAAGTTTTTGGCGAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTTCTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTGGCAATACCCAAAGCCGGTGGCCTAACTTCGCAAGAAGAGGGAACCGTCTAAGGTAGGGTCGATGATTGGGGTTAAGTCGTAACAAGGTATCCCTACCGGAAGGTGGGGATGGAT Tomato_big_bud_phytoplasma -----------------------------------------CTAATACATGCAAGTCGAACGGAAGTTTAAGCAATTAAACTTTAGTGGCGAACGGGTGAGTAACGCGTAAGCAATCTACCCCTAAGACGAGGATAACAGTTGGAAACGACTGCTAAGACTGGATAGTAGACAAGAAGGCATCTTCTTGTTTTTAAAAGACCTA--TTAATAGGTAT-GCTTAGGGAGGAGCTTGCGTCACATTAGTTAGTTGGTGGGGTAAAGGCCTACCAAGACTATGATGTGTAGCCGGGCTGAGAGGTTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTATTTCGGTACGTAAAGTTCTTTTATTAGGGAAGAATAAATG--ATGGAAAA----ATCATTCTGACGGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCTGTTAAATAAGTTTATGGTCTAAGTGCAATGCTCAACATTGTGATGCTATAAAAACTGTTTAGCTAGAGTAAGATAGAGGCAAGTGGAATTCCATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACACCAGTAGCGAAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAACATTGG--GTAAAA-CCAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGGTACCCGAAAAACCTCACCAGGTCTTGACATGCTTCTGCAAAGCTGTAGAAACACAGT-GGAGGTTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATTGTTAGTTGCCAGCACGTAATGGTGGGGACTTTAGCAAGACTGCCAGTGATAAATTGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAAAGGGTAGCTGAAACGCAAGTTTTTGGCGAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTTCTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTGGCAATACCCAAAACCGGTGGCCTAACTTCGCAAGAAGAGGGAACCGTCTAAGGTAGGGTCGATGATTGGGGTTAAGTCGTAACAAGGTATCCCTACCGGAAGGTGGGGATGGAT Western_X_disease AAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAACGGAAACCT------TCGGGTTTTAGTGGCGAACGGGTGAGTAACACGTAAGCAACCTGCCCTTAAGACGAGGATAACAATTGGAAACAGTTGCTAAGACTGGATAGGAAAAGTAAAGGCATCTTTACTTTTTTAAAAGATCTTC-TTTGAAGGTAT-GCTTAAGGAGGGGCTTGCGACACATTAGTTAGTTGGTAGGGTAAAGGCCTACCAAGACTATGATGTGTAGCTGGACTGAGAGGTTGAACAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCTTGAACGATGAAGTACCTCGGTATGTAAAGTTCTTTTATTAAGGAAGAAAAAAGA--GTGGAAAA----ACTCCCTTGACGGTACTTAATGAATAAGCCCCGGCTAATTATGTGCCAGCAGCCGCGGTAATACATAAGGGGCGAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTTAATAAGTCTATAGTTTAATTTCAGTGCTTAACGCTGTTGTGCTATAGAAACTGTTTTACTAGAGTGAGATAGAGGCAAGCGGAATTCCATGTGTAGCGGTAAAATGCGTAAATATATGGAGGAACACCAGAGGCGTAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAGTGTCGG--GTAAAA-CTGGTACTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTGCGTACGCAAGTATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGATACACGAAAAACCTTACCAGGTCTTGACATTTTCTTGCGAAGTTATAGAAATATAAT-GGAGGTCATCAGGAAAACAGGTGCTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTAGGTTAAGTCCTAAAACGAGCGCAACCCTTGTCGTTAGTTGCCAGCATGTAATGATGGGGACTTTAACGAGACTGCCAATGAAAAATTGGAGGAAGGTGGGGATTACGTCAAATCATCATGCCCCTTATGATCTGGGCTACAAACGTGATACAATGGTTGATACAAAGAGTAGCTGAAACGCGAGTTCTTAGCCAATCTCAAAAAATCAATCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTTCTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTGGCAATACCCCAAAGCGGTCACCTAACTTCGCAAGAAGAAGGATCCGTCTAAGGTAGGGTCGATAATTGGGGTTAAGTCGTAACAAGGTATCCCTACCGGAAG-TGGGGATGGAT ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = Fig.3_16S_rDNA) = N: 1-1530; CODONPOSSET CodonPositions (CHARACTERS = Fig.3_16S_rDNA) = N: 1-1530; END; BEGIN TREES; TITLE Tb6902; LINK TAXA = Taxa1; TRANSLATE 1 Aster_yellows_phytoplasma_Maryland_strain_AY1, 2 Aster_yellows_phytoplasma_severe_operonB, 3 Epilobium_phyllody_phytoplasma, 4 Clover_phyllody_phytoplasma_operonB, 5 Aster_yellows_phytoplasma_severe_operonA, 6 Aster_yellows_phytoplasma_western_severe_strain, 7 Aster_yellows_phytoplasma_bolt_distortion2_operonA, 8 Aster_yellows_phytoplasma_bolt_distortion2_operonB, 9 Tomato_big_bud_phytoplasma, 10 Aster_yellows_phytoplasma_A_isolate_99uw111, 11 Aster_yellows_phytoplasma_witches_broom_operonA, 12 Aster_yellows_phytoplasma_semigeotropism, 13 Clover_phyllody_phytoplasma_operonA, 14 Aster_yellows_bolt_white, 15 Aster_yellows_phytoplasma_witches_broom_operonB, 16 Bermuda_grass_white_leaf_phytoplasma, 17 Western_X_disease, 18 Acholeplasma_axanthum, 19 Acholeplama_laidlawii; TREE Fig._3 = [&R] (19,18,((16,17),(((((11,10),9),15)'16SrI-A subgroup',(7,8,3,12,1,(5,14,6,2))'16SrI-B subgroup'),13,4)Aster_yellows_group_16SrI_))Phytoplasma; END; BEGIN TREES; TITLE Tb6903; LINK TAXA = Taxa2; TRANSLATE 1 Acholeplasma_brassicae, 2 Aster_yellows_witches_broom, 3 Aster_yellows_phytoplasma_A_isolate_99uw111, 4 Aconitum_proliferation_phytoplasma, 5 Aster_yellows_phytoplasma_Queen_Annes_lace, 6 Clover_phyllody_phytoplasma_operonA, 7 Clover_phyllody_phytoplasma_operonB, 8 Aster_yellows_phytoplasma_bolt_distortion2_operonB, 9 Aster_yellows_phytoplasma_Maryland_strain_AY1, 10 Aster_yellows_phytoplasma_bolt_distortion2_operonA, 11 Aster_yellows_phytoplasma_severe_operonB, 12 Aster_yellows_phytoplasma_severe_operonA, 13 Aster_yellows_phytoplasma_white_bolt, 14 Aster_yellows_phytoplasma_semigeotropism, 15 Aster_yellows_phytoplasma_western_severe_strain, 16 Bermuda_grass_white_leaf_phytoplasma, 17 Tomato_big_bud_phytoplasma, 18 Western_X_disease, 19 Ash_yellows_phytoplasma; TREE Fig._4 = [&R] (1,(((19,17),16),18),(((15,14,13,12,11,(10,9,8))'16SrI-B subgroup',(7,6)'16SrI-C subgroup'),(5,4,3,2)'16SrI-A subgroup')Aster_yellows_group_16SrI_); END;