#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 27, 2024; 0:18 GMT TreeBASE (cc) 1994-2008 Study reference: Braun U., Crous P.W., Groenewald J.Z., & Scheuer C. 2011. Pseudovirgaria, a fungicolous hyphomycete genus. IMA Fungus, 2(1): 65-69. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S11796] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=11; TAXLABELS Cf._Ramularia_sp._EF600967 Cf._Ramularia_sp._EF600968 Pseudovirgaria_grisea_CPC_19126 Pseudovirgaria_grisea_CPC_19128 Pseudovirgaria_grisea_CPC_19130 Pseudovirgaria_grisea_CPC_19132 Pseudovirgaria_grisea_CPC_19134 Pseudovirgaria_hyperparasitica_EU041765 Pseudovirgaria_hyperparasitica_EU041767 Radulidium_epichloes_EU041785 Radulidium_subulatum_EU041789 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M9959] TITLE ITS_alignment; LINK TAXA = Taxa1; DIMENSIONS NCHAR=545; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Cf._Ramularia_sp._EF600967 ---------------------------------AAGGATCATTATCAGGTGG-CGTAGGC--TTCGGTCTACCCCTCCCACCCTATGTTTACTGTAATC-GTTGCTCATGCAGGTAGCCTGACAGCGTCTGCATGAGAGCATTAACCCTTTAAATTTGAGAATTGTCTGAGTAAAAAGAAACAG-AACAAAACTTTCAACAACGGATCTCTTGGTTCCAGCATCGATGAAGAACGCAGCGAAATGCGATAGCTAGTGTGAATTGCAGATTTATGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCTTGGCTTGCCAGGGGGCATGTCTATCTGAGCGTCGTTACAACTCTCAAGTTTTACTTGGTATTGGTGGTTGTCCTACTCGCTAGGGCACTGCTTAAATTGAACCCGACGTGCC-TGTCTA-GGAACGCAGC-AGATTTTGCAATC-CTTTAGGCAC-AGATGGGCCACTTCGAGTGGAGCCTTCTATAGT---------------------------------------------- Cf._Ramularia_sp._EF600968 ----------------------------------------------------------GC--TTCGGTCTACCCCTCCCACCCCATGTTTACTGTAATC-GTTGCTCATGCAGATAGCCTAACAGCGTCTGCATGAGAGCATTAACCCTTTAAATTTGAGAATTATCTGAGTAAAAAGAAACAA-AACAAAACTTTCAACAACGGATCTCTTGGTTCCAGCATCGATGAAGAACGCAGCGAAATGCGATAGCTAGTGTGAATTGCAGATTTATGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCTTGGCTTGCCAGGGGGCATGTCTATCTGAGCGTCGTTACAACTCTCAAGTTTTACTTGGTATTGGTGGTTGTCCTACTCGCTAGGGCACTGCTTAAATCGAACCCGACGTGCC-TGTCTA-GGAACGCAGC-AGATTTTGCAATC-CTTTAGGCAC-AGATGGGCCACTTCGAGTGGAGCCTTCTATAGTTGACCTCAGATTAGATAGGGATACCCGCTGAACTTAA--------- Pseudovirgaria_grisea_CPC_19126 -------CAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATCAGGTGG-CGTAGGC--TTCGGTCTACCCCTCCCACCCTATGTTTACTGTAATC-GTTGCTCATGCAGGTAGCCTAATAGCGCCTGCATGAGAGCATTAACCCTTAAAATTTGAGAATTGTCTGAGTAAAAAGAAATAA-AACAAAACTTTCAACAACGGATCTCTTGGTTCCAGCATCGATGAAGAACGCAGCGAAATGCGATAGCTAGTGTGAATTGCAGATTTATGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCTTGGCTTGCCAGGGGGCATGTCTATCTGAGCGTCGTTACAACTCTCAAGTTTTACTTGGTATTGGTGGTTGTCCTACTTGCTAGGGCACTGCTTAAATTGAACCCGACGTGCC-TGTCTA-GGAACGCAGC-AGATTTTGCAATC-CTTTAGGCAC-AGATGGGCCACTTCTAGTGGAGCCTTCTATAGTTGACCTCAGATTAGATAGGGATACCCGCTGAACTTAAGCAT----- Pseudovirgaria_grisea_CPC_19128 ------ACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATCAGGTGG-CGTAGGC--TTCGGTCTACCCCTCCCACCCTATGTTTACTGTAATC-GTTGCTCATGCAGGTAGCCTAATAGCGCCTGCATGAGAGCATTAACCCTTAAAATTTGAGAATTGTCTGAGTAAAAAGAAATAA-AACAAAACTTTCAACAACGGATCTCTTGGTTCCAGCATCGATGAAGAACGCAGCGAAATGCGATAGCTAGTGTGAATTGCAGATTTATGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCTTGGCTTGCCAGGGGGCATGTCTATCTGAGCGTCGTTACAACTCTCAAGTTTTACTTGGTATTGGTGGTTGTCCTACTTGCTAGGGCACTGCTTAAATTGAACCCGACGTGCC-TGTCTA-GGAACGCAGC-AGATTTTGCAATC-CTTTAGGCAC-AGATGGGCCACTTCTAGTGGAGCCTTCTATAGTTGACCTCAGATTAGATAGGGATACCCGCTGAACTTAAGCATATCAA Pseudovirgaria_grisea_CPC_19130 ------ACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATCAGGTGG-CGTAGGC--TTCGGTCTACCCCTCCCACCCTATGTTTACTGTAATC-GTTGCTCATGCAGGTAGCCTAATAGCGCCTGCATGAGAGCATTAACCCTTAAAATTTGAGAATTGTCTGAGTAAAAAGAAATAA-AACAAAACTTTCAACAACGGATCTCTTGGTTCCAGCATCGATGAAGAACGCAGCGAAATGCGATAGCTAGTGTGAATTGCAGATTTATGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCTTGGCTTGCCAGGGGGCATGTCTATCTGAGCGTCGTTACAACTCTCAAGTTTTACTTGGTATTGGTGGTTGTCCTACTTGCTAGGGCACTGCTTAAATTGAACCCGACGTGCC-TGTCTA-GGAACGCAGC-AGATTTTGCAATC-CTTTAGGCAC-AGATGGGCCACTTCTAGTGGAGCCTTCTATAGTTGACCTCAGATTAGATAGGGATACCCGCTGAACTTAAGCATATCA- Pseudovirgaria_grisea_CPC_19132 ------ACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATCAGGTGG-CGTAGGC--TTCGGTCTACCCCTCCCACCCTATGTTTACTGTAATC-GTTGCTCATGCAGGTAGCCTAATAGCGCCTGCATGAGAGCATTAACCCTTAAAATTTGAGAATTGTCTGAGTAAAAAGAAATAA-AACAAAACTTTCAACAACGGATCTCTTGGTTCCAGCATCGATGAAGAACGCAGCGAAATGCGATAGCTAGTGTGAATTGCAGATTTATGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCTTGGCTTGCCAGGGGGCATGTCTATCTGAGCGTCGTTACAACTCTCAAGTTTTACTTGGTATTGGTGGTTGTCCTACTTGCTAGGGCACTGCTTAAATTGAACCCGACGTGCC-TGTCTA-GGAACGCAGC-AGATTTTGCAATC-CTTTAGGCAC-AGATGGGCCACTTCTAGTGGAGCCTTCTATAGTTGACCTCAGATTAGATAGGGATACCCGCTGAACTTAAGCATATCA- Pseudovirgaria_grisea_CPC_19134 ------ACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATCAGGTGG-CGTAGGC--TTCGGTCTACCCCTCCCACCCTATGTTTACTGTAATC-GTTGCTCATGCAGGTAGCCTAATAGCGCCTGCATGAGAGCATTAACCCTTAAAATTTGAGAATTGTCTGAGTAAAAAGAAATAA-AACAAAACTTTCAACAACGGATCTCTTGGTTCCAGCATCGATGAAGAACGCAGCGAAATGCGATAGCTAGTGTGAATTGCAGATTTATGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCTTGGCTTGCCAGGGGGCATGTCTATCTGAGCGTCGTTACAACTCTCAAGTTTTACTTGGTATTGGTGGTTGTCCTACTTGCTAGGGCACTGCTTAAATTGAACCCGACGTGCC-TGTCTA-GGAACGCAGC-AGATTTTGCAATC-CTTTAGGCAC-AGATGGGCCACTTCTAGTGGAGCCTTCTATAGTTGACCTCAGATTAGATAGGGATACCCGCTGAACTTAAGCATATC-- Pseudovirgaria_hyperparasitica_EU041765 ---------------------------------AAGGATCATTATCAGGTGG-CGTAGGC--TTCGGTCTACCCCTCCCACCCTATGTTTACTGTAATC-GTTGCTCATGCAGGTAGCCTGACAGCGTCTGCATGAGAGCATTAACCCTTTAAATTTGAGAATTGTCTGAGTAAAAAGAAACAG-AACAAAACTTTCAACAACGGATCTCTTGGTTCCAGCATCGATGAAGAACGCAGCGAAATGCGATAGCTAGTGTGAATTGCAGATTTATGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCTTGGCTTGCCAGGGGGCATGTCTATCTGAGCGTCGTTACAACTCTCAAGTTTTACTTGGTATTGGTGGTCGTCCTACTCGCTAGGGCACTGCTTAAATTGAACCCGACGTGCC-TGTCTA-GGAACGCAGCTAGATTTTGCAATC-CTTTAGGCAC-AGATGGGCCACTTCGAGTGGAGCCTTCTATAGTTGACCTCAGATTAGATAGGGAT------------------------ Pseudovirgaria_hyperparasitica_EU041767 ---------------------------------AAGGATCATTATCAGGTGG-CGTAGGC--TTCGGTCTACCCCTCCCACCCTATGTTTACTGTAATC-GTTGCTCATGCAGGTAGCCTGACAGCGTCTGCATGAGAGCATTAACCCTTTAAATTTGAGAATTGTCTGAGTAAAAAGAAACAG-AACAAAACTTTCAACAACGGATCTCTTGGTTCCAGCATCGATGAAGAACGCAGCGAAATGCGATAGCTAGTGTGAATTGCAGATTTATGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCTTGGCTTGCCAGGGGGCATGTCTATCTGAGCGTCGTTACAACTCTCAAGTTTTACTTGGTATTGGTGGTTGTCCTACTCGCTAGGGCACTGCTTAAATTGAACCCGACGTGCC-TGTCTA-GGAACGCAGC-AGATTTTGCAATC-CTTTAGGCAC-AGATGGGCCACTTCGAGTGGAGCCTTCTATA------------------------------------------------ Radulidium_epichloes_EU041785 -----AACAAGGTCTCCGTAGGTGAACCTGCGGAGGGATCATTAACAGGTTCTGGTCGGCGGCTCCGTCGCACCGTTCCTCCCTCTGTCTACCGTACACCGTTGCTCGGGC-----GGGCTCCGGCCCGCGCGGGATCATCACAACCCTCCC---TTGCGAA-TGTCTGAGTACCAACAAATACCAACAAAACTTTTAACAACGGATCTCTTGGTTCCAACATCGATGAAGAACGCAGCGAAATGCGATAGCTAGTGTGAATTGCAGATTTACGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCTCGGTTCTCCGGGGGGCATGTCTGTCCGAGCGTCGTTGCAACCCTCAAGCTT-GCTTGGTCATGGGGATCGTGCCGCCTGGCGGCGCGTCCCTCAAACGCAACTCGACGTGCCTTGTCAGCGGAGCGCAGT-AGAA--TGCCGCCCCGTGAGGTGCCACC-GGGCT-CTTCG--GAGACCACCC---AGTTGACCTCGGATCAGATAGGGATACCCGCTGAACTTAAGCA------ Radulidium_subulatum_EU041789 GTCGTAACAAGGTCTCCGTAGGTGAACCTGCGGAGGGATCATTAACAGGTTCTGGTCGGCCGTCCGGTCGCACCGTCCCTCCCTCTGTCTACCGTACACTGTTGCTCGAGC-----GGGCGCAAGCCCGCGCGGGATAACCACAACCCTTCT---TAGCGAA-TGTCTGAGTACCAACAAATACAAACAAAACTTTTAACAACGGATCTCTTGGTTCCAACATCGATGAAGAACGCAGCGAAATGCGATAGCTAGTGTGAATTGCAGATTTACGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCTCGGTTCTCCGGGGGGCATGTCTGTCCGAGCGTCGTTGCAACTCTCAAGTTT-ACTTGGTCATGGGGATCGTGCCGCCCGGCGGCGCGTCCCTCAAACGCAACTCGACGTGCCTTGTCAGCGGAGCGCAGT-AGAA--TGCTGCTTCGTGAGGTGCCACCCGGGCT-CTTCG--GAGACCACCG---TGTTGACCTCGGATCAGATA----------------------------- ; END; BEGIN SETS; CHARSET ITS (CHARACTERS = ITS_alignment) = 59-497; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = ITS_alignment) = N: 1-545; CODONPOSSET CodonPositions (CHARACTERS = ITS_alignment) = N: 1-545; END; BEGIN TREES; TITLE First_of_two_equally_parsimonious; LINK TAXA = Taxa1; TRANSLATE 1 Pseudovirgaria_hyperparasitica_EU041765, 2 Pseudovirgaria_hyperparasitica_EU041767, 3 Pseudovirgaria_grisea_CPC_19132, 4 Pseudovirgaria_grisea_CPC_19126, 5 Pseudovirgaria_grisea_CPC_19128, 6 Pseudovirgaria_grisea_CPC_19130, 7 Pseudovirgaria_grisea_CPC_19134, 8 Cf._Ramularia_sp._EF600968, 9 Cf._Ramularia_sp._EF600967, 10 Radulidium_subulatum_EU041789, 11 Radulidium_epichloes_EU041785; TREE Fig._1 = [&R] (((((1,2,9),8),(3,4,5,6,7)),11),10); END;