#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on March 29, 2024; 1:52 GMT TreeBASE (cc) 1994-2008 Study reference: Meshram V., Kapur N., & Saxena S. 2011. Exploration of endophytic fungi with potential to combat multidrug resistant Staphylococcus aureus from Aegle marmelos. Mycology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S11798] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=25; TAXLABELS Alternaria_abutilonis_QMT_AF314578 Alternaria_aff._dianthicola_RHR2_clone_AY923859 Alternaria_alternata_IEIHBT_GQ121322 Alternaria_alternata_Wb398_AF455448 Alternaria_brassicae_B_DQ156344 Alternaria_brassicae_FJ869872 Alternaria_citri_AC2_AF314579 Alternaria_compacta_15_FR846400 Alternaria_crassa_DGG_Acr1_AF229464 Alternaria_gaisen_NW576_EU520078 Alternaria_infectoria_4A_Y17066 Alternaria_linicola_Y17086 Alternaria_longipes_EGS30.033_AY751457 Alternaria_longipes_GL1YS4_AB369424 Alternaria_mali_AY154683 Alternaria_marmelos_1005AMLBRT Alternaria_palandui_Alt14_DQ323687 Alternaria_pomicola_PL1_AF314583 Alternaria_solani_ICMP_6519.79_Y17069 Alternaria_tenuissima_CZ075A_FJ755199 Alternaria_tenuissima_IA287_AY154712 Alternaria_triticimaculans_EGS_40.150_AY762949 Bionectria_ochroleuca_X12_AB470908 Marssonina_mali_NW195_EU520097 Phomopsis_sp._G26_EF432256 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M9978] TITLE 'Alternaria to combat multidrug resistant Staphylococcus aureus, ITS1-ITS2'; LINK TAXA = Taxa1; DIMENSIONS NCHAR=1023; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Alternaria_abutilonis_QMT_AF314578 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATG-AAGGCGGGCTGGAACCT---------------------------CTCGGGGTTA-CAGCCTTGCTGAATTATT-CACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGGTTCGCCCACCACTAGGA-CAAACAT---AAACCTTTTGTAATTGCAATCAGCGTCAGTAACAAATTAATAA-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT---GTCTCT-AGCTTTGCTGGAGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTCTATCAG--CAAAGGTCTAGCATCCATTAAGCC----TTTTTTTCAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAAC-TTAAGCATATCAATAAGCGGAGGA----------------------------------------------------------- Alternaria_aff._dianthicola_RHR2_clone_AY923859 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATG-AAGGCGGGCTGGAACCT---------------------------CTCGGGGTTA-CAGCCTTGCTGAATTATT-CACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGGTTCGCCCACCACTAGGA-CAAACAT---AAACCTTTTGTAATTGCAATCAGCGTCAGTAACAAATTAATAA-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT---GTCTCT-AGCTTTGCTGGAGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTCTATCAG--CAAAGGTCTAGCATCCATTAAGCC----TTTTTTTCAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAAC-TTAAGCATATCAATAAGCGGAGGA----------------------------------------------------------- Alternaria_alternata_IEIHBT_GQ121322 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGATGGCTCAGTGAGGCCTTCGGACTGGCTCGAGGAGGTTGGCAACGACCACCTCAAGCCGGAAAGTTCGTCAAACTCGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATG-AAGGCGGGCTGGAACCT---------------------------CTCGGGGTTA-CAGCCTTGCTGAATTATT-CACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGGTTCGCCCACCACTAGGA-CAAACAT---AAACCTTTTGTAATTGCAATCAGCGTCAGTAACAAATTAATAA-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT---GTCTCT-AGCTTTGCTGGAGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Alternaria_alternata_Wb398_AF455448 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATG-AAGGCGGGCTGGAACCT---------------------------CTCGGGGTTA-CAGCCTTGCTGAATTATT-CACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGGTTCGCCCACCACTAGGA-CAAACAT---AAACCTTTTGTAATTGCAATCAGCGTCAGTAACAAATTAATAA-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT---GTCTCT-AGCTTTGCTGGAGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTCTATCAG--CAAAGGTCTAGCATCCATTAAGCC----TTTTTTTCAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAAC-TTAAGCATATCAATAAGCGGAGGAA---------------------------------------------------------- Alternaria_brassicae_B_DQ156344 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATG-AAGGCGGGCTGGAACCT---------------------------CTCGGGGTTA-CAGCCTTGCTGAATTATT-CACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGGTTCGCCCACCACTAGGA-CAAACAT---AAACCTTTTGTAATTGCAATCAGCGTCAGTAACAAATTAATAA-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT---GTCTCT-AGCTTTGCTGGAGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTCTATCAG--CAAAGGTCTAGCATCCATTAAGCC----TTTTTTTCAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAAC-TTAAGCATATCAATAAGCGGAGGA----------------------------------------------------------- Alternaria_brassicae_FJ869872 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATG-AAGGCGGGCTGGAACCT---------------------------CTCGGGGTTA-CAGCCTTGCTGAATTATT-CACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGGTTCGCCCACCACTAGGA-CAAACAT---AAACCTTTTGTAATTGCAATCAGCGTCAGTAACAAATTAATAA-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT---GTCTCT-AGCTTTGCTGGAGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTCTATCAG--CAAAGGTCTAGCATCCATTAAGCC----TTTTTTTCAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAAC-TTAAGCATATCAATAAGCGGAGGAAAA-------------------------------------------------------- Alternaria_citri_AC2_AF314579 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATG-AAGGCGGGCTGGAACCT---------------------------CTCGGGGTTA-CAGCCTTGCTGAATTATT-CACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGGTTCGCCCACCACTAGGA-CAAACAT---AAACCTTTTGTAATTGCAATCAGCGTCAGTAACAAATTAATAA-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT---GTCTCT-AGCTTTGCTGGAGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTCTATCAG--CAAAGGTCTAGCATCCATTAAGCC----TTTTTTTCAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAAC-TTAAGCATATCAATAAGCGGAGGA----------------------------------------------------------- Alternaria_compacta_15_FR846400 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATTACACAAATATG-AAGGCGGGCTGGAACCT---------------------------CTCGGGGTTA-CAGCCTTGCTGAATTATT-CACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGGTTCGCCCACCACTAGGA-CAAACAT---AAACCTTTTGTAATTGCAATCAGCGTCAGTAACAAATTAATAA-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT---GTCTCT-AGCTTTGCTGGAGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTCTATCAG--CAAAGGTCTAGCATCCATTAAGCC----TTTTTTTCAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAAC-TTAAGCATATCAATAAGCGGAGGAAAAAAAA---------------------------------------------------- Alternaria_crassa_DGG_Acr1_AF229464 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGATCATTACACAAATATG-AAGGCGGGCTGGCACCT---------------------------CTCGGGGTGGCCAGCCTTGCTGAATTATT-CACCCGTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGGCTCGCCCACCACAAGGA-CCAACCCATAAACCTTTTTGTAATGGCAATCAGCGTCAGTAACAATGTAATAA-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTTTTTGTCTCC-CCCATGCGGGGAGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCGCTCTCTTCCAGCCCCAAGGTCTAGCATCCACCAAGCCTTTTTTTTTTTCAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAAC-TTACA------------------------------------------------------------------------------ Alternaria_gaisen_NW576_EU520078 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTAGGGGAACCTGCGGAGGGATCATTACACAAATATG-AAGGCGGGCTGGAACCT---------------------------CTCGGGGTTA-CAGCCTTGCTGAATTATT-CACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGGTTCGCCCACCACTAGGA-CAAACAT---AAACCTTTTGTAATTGCAATCAGCGTCAGTAACAAATTAATAA-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT---GTCTCT-AGCTTTGCTGGAGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTCTATCAG--CAAAGGTCTAGCATCCATTAAGCC----TTTTTTTCAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAAC-TTAAGCATATCAATAAGCGGAGGA----------------------------------------------------------- Alternaria_infectoria_4A_Y17066 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAATAAC--AAGGCGGGCTGGACACCCCCCGCTGGGCACTGCTTCACGGCGTGCGCGGCGGGGCCGGCCCTGCTGAATTATT-CACCCGTGTCTTTTGCGTACTTCTTGTTTCCTGGGTGGGCTCGCCCGCCCTCAGGACCAACCAC---AAACCTTTTGCAATAGCAATCAGCGTCAGTAACAACGTAATTAATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT---TTGTCTCCAGTTCGCTGGAGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCGCTCTTCGCCAG--CCAAGGTC-AGCGTCCAGCAAGCC----TTTTTTTCAACCTTTGACCTCGGATCAGGTAGGGATACCCGCTGAAC-TTAAGCATATCAATAAGC----------------------------------------------------------------- Alternaria_linicola_Y17086 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAAATATG-AAGGCGGGCTGGCACCT---------------------------CCCGGGGTGGCCAGCCTTGCTGAATTATTCCACCCGTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGGCTCGCCCACCACAAGGA-CCAACCCATAAACCTTTTTGCAATGGCAATCAGCGTCAGTAACAATGTAATAATTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTTTTTGTCTCC---CCTTGCGGGAGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCGCTCTCTTCCAGCCCCAAGGTCTAGCATCCACCAAGCC---TTTTTTTTCAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAAC-TTAAGCATATCAATAAGC----------------------------------------------------------------- Alternaria_longipes_EGS30.033_AY751457 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATG-AAGGCGGGCTGGAACCT---------------------------CTCGGGGTTA-CAGCCTTGCTGAATTATT-CACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGGTTCGCCCACCACTAGGA-CAAACAT---AAACCTTTTGTAATTGCAATCAGCGTCAGTAACAAATTAATAA-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT---GTCTCT-AGCTTTGCTGGAGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTCTATCAG--CAAAGGTCTAGCATCCATTAAGCC----TTTTTTTCAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAAC-TTAAGCATATCAATAAGCGGAGGAA---------------------------------------------------------- Alternaria_longipes_GL1YS4_AB369424 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATG-AAGGCGGGCTGGAACCT---------------------------CTCGGGGTTA-CAGCCTTGCTGAATTATT-CACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGGTTCGCCCACCACTAGGA-CAAACAT---AAACCTTTTGTAATTGCAATCAGCGTCAGTAACAAATTAATAA-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT---GTCTCT-AGCTTTGCTGGAGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTCTATCAG--CAAAGGTCTAGCATCCATTAAGCC----TTTTTTTCAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAAC-TTAAGCATATCAATAAGCGGAGGAA---------------------------------------------------------- Alternaria_mali_AY154683 ACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCTTTTCCTTGTTCGAAAGAATTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAAAGCATTGCAATTATTGCTTTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCATGCGTTGATTACGTCCCTGACCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGGCTCAGTGAGGCCTTCGGACTGGCTCGAGGAGGTTGGCAACGACCACCTCAAGCCGGAAAGTTCGTCAAACTCGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATG-AAGGCGGGCTGGAACCT---------------------------CTCGGGGTTA-CAGCCTTGCTGAATTATT-CACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGGTTCGCCCACCACTAGGA-CAAACAT---AAACCTTTTGTAATTGCAATCAGCGTCAGTAACAAATTAATAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Alternaria_marmelos_1005AMLBRT ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTCCTCCGTA-GGGTAAACCTGCGAAGGAATAAATAAACAAAGAGG-AGGAAGGGCTGGAATCT---------------------------CTCGGGGTTA-CAGCCTTGCTGAATTATT-CACCCTTGACTTTTGCCTACTTCTTGTTTCCTTGGTGGGTTCGCCCACCACTAGGA-CAAACAT---AAACCTTTTGTAATTGCAATCAGCGTCAGTAACAAATTAATAA-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTCCTTGGTGTTGGGCGTCTT---GTCTCT-AGCTTTGCTGGAGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACGCTCAATCAG--CAAAAGGCTAGCATCCATTAAGCC----TTTTTTTCAACTTTTGACCTCGGATCAGGTAGGGAAACCCGCGGAACATCAAGAAAA-AAATAAGCGGAGGAAGCC------------------------------------------------------- Alternaria_palandui_Alt14_DQ323687 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGGATCATATACGCCGGTAGGAAGGACGGGCTGGAATCT---------------------------CTCGGGGTTA-CAGCCTTGCTGAATTATT-CACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGGTTCGCCCACCACTAGGA-CAAACAT---AAACCTTTTGTAATTGCAATCAGCGTCAGTAACAAATTAATAA-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT---GTCTCT-AGCTTTGCTGGAGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTCTATCAG--CAAAGGTCTAGCATCCATTAAGCC----TTTTTTTCAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAAC-TTAAGCATATCAATAAGCCGGAGGAA--------------------------------------------------------- Alternaria_pomicola_PL1_AF314583 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATG-AAGGCGGGCTGGAACCT---------------------------CTCGGGGTTA-CAGCCTTGCTGAATTATT-CACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGGTTCGCCCACCACTAGGA-CAAACAT---AAACCTTTTGTAATTGCAATCAGCGTCAGTAACAAATTAATAA-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT---GTCTCT-AGCTTTGCTGGAGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTCTATCAG--CAAAGGTCTAGCATCCATTAAGCC----TTTTTTTCAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAAC-TTAAGCATATCAATAAGCGGAGGA----------------------------------------------------------- Alternaria_solani_ICMP_6519.79_Y17069 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAAATATG-AAGGCGGGCTGGCACCT---------------------------CCCGGGGTGGCCAGCCTTGCTGAATTATTCCACCCGTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGGCTCGCCCACCACAAGGA-CCAACCCATAAACCTTTTTGCAATGGCAATCAGCGTCAGTAACAATGTAATAATTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTTTTTGTCTCC---CCTTGCGGGAGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCGCTCTCTTCCAGCCCCAAGGTCTAGCATCCACCAAGCC--TTTTTTTTTCAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAAC-TTAAGCATATCAATAAGC----------------------------------------------------------------- Alternaria_tenuissima_CZ075A_FJ755199 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGGGTT-CAGCCTTGCTGAATTATT-CACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGGTTCGCCCACCACTAGGA-CAAACAT---AAACCTTTTGTAATTGCAATCAGCGTCAGTAACAAATTAATAA-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT---GTCTCT-AGCTTTGCTGGAGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTCTATCAG--CAAAGGTCTAGCATCCATTAAGCC----TTTTTTTCAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTT Alternaria_tenuissima_IA287_AY154712 ACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCTTTTCCTTGTTCGAAAGAATTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAAAGCATTGCAATTATTGCTTTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCATGCGTTGATTACGTCCCTGACCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGGCTCAGTGAGGCCTTCGGACTGGCTCGAGGAGGTTGGCAACGACCACCTCAAGCCGGAAAGTTCGTCAAACTCGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATG-AAGGCGGGCTGGAACCT---------------------------CTCGGGGTTA-CAGCCTTGCTGAATTATT-CACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGGTTCGCCCACCACTAGGA-CAAACAT---AAACCTTTTGTAATTGCAATCAGCGTCAGTAACAAATTAATAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Alternaria_triticimaculans_EGS_40.150_AY762949 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCT---------------------------CTCGGGGTTA-CAGCCTTGCTGAATTATT-CACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGGTTCGCCCACCACTAGGA-CAAACAT---AAACCTTTTGTAATTGCAATCAGCGTCAGTAACAAATTAATAA-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT---GTCTCT-AGCTTTGCTGGAGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTCTATCAG--CAAAGGTCTAGCATCCATTAAGCC----TTTTTTTCAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAAC-TTAAGCATATCAATAAGCGGAGGAAAAA------------------------------------------------------- Bionectria_ochroleuca_X12_AB470908 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATG-AAGGCGGGCTGGAACCT---------------------------CTCGGGGTTA-CAGCCTTGCTGAATTATT-CACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGGTTCGCCCACCACTAGGA-CAAACAT---AAACCTTTTGTAATTGCAATCAGCGTCAGTAACAAATTAATAA-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT---GTCTCT-AGCTTTGCTGGAGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTCTATCAG--CAAAGGTCTAGCATCCATTAAGCC----TTTTTTTCAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAAC-TTAAGCATATCAATAAGCGGAGGAA---------------------------------------------------------- Marssonina_mali_NW195_EU520097 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACTGCGGAGGGATCATTACA{CG}{AT}{AC}ATATG-AAGGCGGGCTGGAACCT---------------------------CTCGGGGTTA-CAGCCTTGCTGAATTATT-CACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGGTTCGCCCACCACTAGGA-CAAACAT---AAACCTTTTGTAATTGCAATCAGCGTCAGTAACAAATTAATAA-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT---GTCTCT-AGCTTTGCTGGAGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTCTATCAG--CAAAGGTCTAGCATCCATTAAGCC----TTTTTTTCAACTTTTGACCTCGGATCAGGTAGGGATACCCGC{GT}GA{AT}C-TTAAGCATATCA-TAACCG---------------------------------------------------------------- Phomopsis_sp._G26_EF432256 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAGTCGTAACAAGGTCTCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATG-AAGGCGGGCTGGAACCT---------------------------CTCGGGGTTA-CAGCCTTGCTGAATTATT-CACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGGTTCGCCCACCACTAGGA-CAAACAT---AAACCTTTTGTAATTGCAATCAGCGTCAGTAACAAATTAATAA-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTT---GTCTCT-AGCTTTGCTGGAGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTCTATCAG--CAAAGGTCTAGCATCCATTAAGCC----TTTTTTTCAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAAC-TTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAAC----------- ; END; BEGIN TREES; TITLE Bayes_result; LINK TAXA = Taxa1; TRANSLATE 1 Alternaria_brassicae_B_DQ156344, 2 Alternaria_pomicola_PL1_AF314583, 3 Alternaria_citri_AC2_AF314579, 4 Alternaria_aff._dianthicola_RHR2_clone_AY923859, 5 Alternaria_abutilonis_QMT_AF314578, 6 Alternaria_gaisen_NW576_EU520078, 7 Alternaria_longipes_EGS30.033_AY751457, 8 Bionectria_ochroleuca_X12_AB470908, 9 Alternaria_alternata_Wb398_AF455448, 10 Alternaria_longipes_GL1YS4_AB369424, 11 Alternaria_brassicae_FJ869872, 12 Alternaria_compacta_15_FR846400, 13 Alternaria_triticimaculans_EGS_40.150_AY762949, 14 Alternaria_palandui_Alt14_DQ323687, 15 Marssonina_mali_NW195_EU520097, 16 Phomopsis_sp._G26_EF432256, 17 Alternaria_tenuissima_CZ075A_FJ755199, 18 Alternaria_marmelos_1005AMLBRT, 19 Alternaria_solani_ICMP_6519.79_Y17069, 20 Alternaria_linicola_Y17086, 21 Alternaria_crassa_DGG_Acr1_AF229464, 22 Alternaria_infectoria_4A_Y17066, 23 Alternaria_alternata_IEIHBT_GQ121322, 24 Alternaria_mali_AY154683, 25 Alternaria_tenuissima_IA287_AY154712; TREE PAUP_1 = [&R] ((22:0.08889,(21:0.018514,(19:0.0,20:0.0):0.0):0.027289):0.0210195,(17:0.013298,((23:0.003656,(24:0.0,(25:0.0,(1:0.0,2:0.0):0.0):0.0):0.0):0.0,(16:0.001659,(15:0.008154,((14:0.025106,18:0.06553):0.02135,(13:0.0,(12:0.002012,(11:0.0,(10:0.0,(9:0.0,(8:0.0,(7:0.0,(6:0.001869,(5:0.0,(3:0.0,4:0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.001672):0.0):0.0):0.0210195); END;