#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on April 25, 2024; 14:32 GMT

TreeBASE (cc) 1994-2008

Study reference:
Donoghue M.J., Olmstead R., Smith J., & Palmer J. 1992. Phylogenetic relationships
of Dipsacales based on rbcL sequences. Annals of the Missouri Botanical Garden,
79: 333-345.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S118]

BEGIN TAXA;
        TITLE  Taxa1;
        DIMENSIONS NTAX=12;
        TAXLABELS
            Adoxa
            Cornus
            Dipsacus
            Hedera
            Heuchera
            Lonicera
            Menyanthes
            Sambucus
            Spigelia
            Symphoricarpos
            Valeriana
            Viburnum
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3516]

	TITLE Table_1;
	LINK TAXA = Taxa1;
	DIMENSIONS NCHAR=88;
	FORMAT DATATYPE=Standard SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                          10        20        30        40        50        60        70        80        ]
[                           .         .         .         .         .         .         .         .        ]
Adoxa              TAAGCTTCACCGACTACCGCCTTTCTTTTGACAGCCCGTTCCAGAGGCAGAACCCCTTCGTCACCTCCGTACTTAGAGCTGCATAAGA
Cornus             TAAGCTCTGCCGAATCTCGTCTTTCTCTTGACAAATTGCCAATTGGACAGGGCTCTGTGGTTGTCGTTGCGTTTACGGCTGTATAAGA
Dipsacus           CAAACACCGCCGAAAACTGCCTCTCTCTAGGTAAATTGCTCCAGAAATACGGTTTTGTGGTCACC??CGCGCTTGCGGCTGTCCAGCC
Hedera             TAAGCTCCGCCGAGTACCATCCTTCTCTTGACAGCTCGCTACAGGGGCAGGGCTTTGTCGTCGCGTCCCCGTCCACGGCTGCATAACA
Heuchera           TAGGTTCCATCGAGTCCCGCCCTTGTCTTAACAACTTACCACAGAGACACGGCCTTGTGATTACCTTCGCATCTACGATTATATAAAT
Lonicera           CGGGTACCGCCGACTACTGCCCCTCTTCTGACGGATTGCTCATGAGATCGGGCCCTGCCGCCGCCGCCACGTTTGCGGC?ACCCAATC
Menyanthes         TAAACTCGGTCCAGTACCATTCTTCCCTTGACATTTTACTGCAGGGGCAGGGCTCCTTCGTCACCTCCGCGTTTACGACTGCATGACA
Sambucus           TAAGCTTCGCCGAGTACCGCCTT?CTTTTGACAGCCCGTTGCAGAGGCCGAACCCTGTCGTCGCCGCCTTGCTTAGGGCTGCATAACA
Spigelia           C?GACTCTGCTCGAACCCACTCTCGCGTAGACGGTTTACTACTGAAACAGAGTTCTTTCATTGTGGTTCCACTTATGACTGTATAGAA
Symphoricarpos     TGAGTACCGCCCACTACTGCCCCCCTTCCGACGGATTGCTCAAGGGATCGGGCCCTGCCGCCGCCTCCACG?TTGCGGTCACCAAACC
Valeriana          GAAGCACGGCTGGCTATTGTCCTTCCTCTAGTAGATTGCTCAATAGGTACGGCCCCGTGGTCACCTCCGCGCTCGTAGCCGTCCGGTC
Viburnum           TAAGCTTCGCCGAGTACCG?CTTTCTCTAGACAGCCCGCTAAAGAGGCTGGGCTCTGTCGTCGCCGCCGCGCTTACGGCCGCATAACA
;
END;

BEGIN TREES;
      TITLE Tb4838;
      LINK TAXA = Taxa1;
         TRANSLATE
            1    Heuchera,
            2    Hedera,
            3    Cornus,
            4    Spigelia,
            5    Menyanthes,
            6    Adoxa,
            7    Sambucus,
            8    Viburnum,
            9    Lonicera,
            10   Symphoricarpos,
            11   Valeriana,
            12   Dipsacus;
      TREE Fig._1D = [&R] (1,(4,(3,((((6,7),8),(5,2)),(((9,10),11),12)))));
      TREE Fig._3 = [&R] (1,(4,3,6,7,8,5,2,9,10,11,12));
      TREE Fig._6A = [&R] (1,(4,3,((5,2),(((6,7),8),((9,10),(11,12))))));
      TREE Fig._6D = [&R] (1,(3,(2,((5,4),((6,7),8),((9,10),(11,12))))));
      TREE Fig._6B = [&R] (1,(4,3,((5,2),(6,(7,(8,(9,10)))),(11,12))));
      TREE Fig._6C = [&R] (1,(4,(3,(((5,2),(((6,7),8),(9,10))),(11,12)))));
      TREE Fig._3 = [&R] (1,(4,3,((6,7),8),5,2,((9,10),11,12)));
      TREE Fig._3 = [&R] (1,(4,3,(6,7),8,5,2,((9,10),11,12)));
      TREE Fig._3 = [&R] (1,(4,3,6,7,8,5,2,((9,10),11,12)));
      TREE Fig._3 = [&R] (1,(4,3,6,7,8,5,2,(9,10),11,12));
      TREE Fig._2 = [&R] (1,(4,3,(((6,7),8),(5,2),((9,10),11,12))));
      TREE Fig._1A = [&R] (1,(4,(3,(((6,7),8),((5,2),((9,10),(11,12)))))));
      TREE Fig._1B = [&R] (1,(4,(3,((((6,7),8),(5,2)),((9,10),(11,12))))));
      TREE Fig._1C = [&R] (1,((4,3),((((6,7),8),(5,2)),((9,10),(11,12)))));



END;