#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 19, 2024; 10:08 GMT TreeBASE (cc) 1994-2008 Study reference: Fuertes-aguilar J., Ray M.F., Francisco-orteca J., Santos-guerra A., & Jansen R.K. 2002. Molecular Evidence from Chloroplast and Nuclear Markers for Multiple Colonizations of Lavatera (Malvaceae) in the Canary Islands. Systematic Botany, 21(1): 74-81. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S12140] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=16; TAXLABELS Alcea_rosea Althaea_officinalis Anisodontea_capensis Kitaibela_vitifolia Lavatera_acerifolia Lavatera_arborea Lavatera_assurgentiflora Lavatera_cretica Lavatera_maritima Lavatera_olbia Lavatera_phoenicea Lavatera_trimestris Lavatera_venosa Malva_nicaensis Malva_parviflora Malva_sylvestris ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M10895] TITLE Lavatera_ITS_Data; LINK TAXA = Taxa1; DIMENSIONS NCHAR=761; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Alcea_rosea AAGGATCATTGTCGAAACCTGCCTAGCAGAATGACCCGTGAATGTGATATCAAA--CAATCGAATGAGGGGGGTGAGGATGCATGTTTGCCCCAAACCCCCTCGTTGCCTAGGTGTGCTTGGCCTTTCCCCATTCGTTCTTGGGCGGGTGAGATTACAGGTCTTGTTGCACTC--AGGTAAAATGAACAACCCCCGGCGCGAATTGCGTCAAGGAATTAAAAATGAAAAGAGTGCACGTCTACTGTCATCGTCCCGTATGCGGTGTTTGTGTGGCAGTGATGCTGTTACTTTTGTCGTGAAAA?TACAAAACGACTCT-CGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACG????????GCGATACTTGGTGTGAATTGCAG-AATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTCGCGGGGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGCATCGTCGCCCCAATCAAACCCTAAGCCATCGCGCTACGGTTGCATTGTGGGCGGAAATTGGCCTCCCTTGTGCTCACCGCT--CATGGTTGGCCTAAAATTTGGTCCT-CGGCGATGAAT-TGCC-GCGACAATCGGTGGGAATGCTTAATAAGCTGCCTCGTTAGTTATCGTGTGTGCTCGTTGATTTGGACCCTTTTGACCCTTTT--GGCATCACTAT-GTCGA-TGCTCGCATCGGGACCCCA-GGTCAGGCGGGATTACCCGCTGAGTTTAAGCATATCAATAA Althaea_officinalis AAGGATCATTGTCGAAACCTGCCTAGCAGAATGACCTGTGAACGTGATATCAAA--CAATTGAACGAGGGGG-TGAGGATGCATCCTTGCCCCAAACCCCCTCGCTGCCTTGGTGTGATTGGATTCTCCCCACTCGCTCTTGGGCGGGTGAGATGTCAGGTCTTGTCGCACTC--GGGCAAAATGAACAACCCCCGGCGCGAATCGCGTCAAGGAATTAAAAATGAAAAGGGTGCGCGTCTACTGTCGTCGTCCCGTACGCGGTGTTTGTGCGGCAGTGACGCTGTTACTCTAGTCGTGAAAATACAAAACGACTCT-CGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACG??GCGAAATGCGATACTTGGTGTGAATTGCAG-AATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGCATCGTCGCCCCCATCAAACCCTAAGCCGTCGGGCTGCGGTTGCAATGTGGGCGGAAATTGGCCTCCCGTGTGCTCACCGCT--CGTGGTTGGCCTAAAATTCAGTCCT-CGGCGATGAAT-TGCCTGCGACAATCGGTGGGAATGCTTTG--AGCTGCCTCGTTAGTTGTCGTGTGTGCTCGTTGATTAGGACCCTTTTGACCCTTCT--GGCATCGCAAT-GCCGG-TGCTCGCATCGGGACCCCA-GGTCAGGCGGGATTACCCGCTGAGTTTAAGCATATCAATAA Anisodontea_capensis ----------GTCGAAACCTGCCTAGCAGAACGACCCGTGAACGTGATATCAAA--CAACTCAAAGAGGGGG-CGCGGATGCATCCTTGCCCCAAACCCCCTCGATGCCTTGGTGTGCTTTGCCTTTCCCCATCCGCTCTTGGGCGGGTGAGATGATAGGTCTTGTCACACTCCAAGGCAAAACGAACAACCCCCGGCGCGAATTGCGCCAAGGAATAAAAAATGAAAAGAGTGCACGTCTTCTGTCACCGTCCCGTACGCGGTGTCTGTGTGGCAGTGACGTTGTTACTTTTGTCGTGAAAATA???----------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTCGCCCCCATCAAACTCTGAGCCCTTGGGCTACGGTTGCACTGTGGGCGGAAATTGGCCTCCCGTGCGCTCACCGCT--CGCGGTTGGCCTAAAATTGAGTCCT-CGGCGATGAAG-TGCC-GCGACAATCGGTGGGAATGCTTTT--AGCTGCCTCGTTCGAAGTCGTGCGCGCTCGTTGATTAGGACTGTTCTGACCCTTTTT-GGCATCGCAAA-GTCGA-TGCTCGCATCG-------------------------------------------------- Kitaibela_vitifolia ?????-----GTCGAAACCTGCCTAGCAGAATGACCCGTGAACGTGATATCAAA--CAATTGAACGAGGGGG-TGAGGATGCATCCTTGCCCCAAACCCCCTCGTTGCCTTGGTGTGCTTGGCCTTTCCCCATTCGCTGTTGGGCGGGTGAGATGACAGGTCTTGTCACACTCTTAGGCAAAATGAACAACCCCCGGCGCGAATTGCGTCAAGGAATTAAAAATGAAAAGAGTGCACGTCTACTGTCGTCGTCCCGTACGCGGTGTCTGTGTGGCAGTGACGCTGTTACTTTTGTCGTGAAAATA????????????????????????????????-----------------------------------------------------------------------------------------------------------------------------------------CGTCGCCCCCATCAAACCCTGAGCCCTTGGCGTACGGTTGCACTGTGGGCGGAAATTGGCCTCCCGTGTGCTTACCGCACACGCGGTTGGCCAAAAATCTGAGCGATTGG--ATGACG-TCCC-GCGACAATCGGTGGTGAATTCAAA----CTGCCTCGTCACGTCCCGCGACAATCGGTGGTGAATTCAAACTGCCTCGTCATATCGTCGGTCGTTCCGGTCCAAAAGCTCTCGATGACCCTTTTGGCATCGCAATGTCGATCCTCAACG??????????????? Lavatera_acerifolia ???????????????????????????????????CCGCGAACGTGATATCAAA--CAACCGA?CGAGGGGG-CGAGGATGCATCCTTGCCCCGAACCCCCTCGACGCCTCGG??CGCCTAGCCTCGCCGCATCCGCCCTCGGGCGGGTGTGACGGGCTTCGTCACGCTCCG---AGGCAAAACGAACAACCCCCGGCGCGAACCGCGTCAAGGAATAAAAAATGAAAAGAGTGCGTGTTTCGTTGTCGTCC--------------------GGCATCGAGGACGTCGCTCTCGTCGTGAAAATAAAAAACGACTCT-CGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAG-AATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGG-CACGTCTGCCTGGGTGTCACGCATCGTCGCCCCCGTCAAACCCCGAGCCCTCGGGCCGGGATCGACGCGCGGGCGGAAATTGGCCTCTCGTGCGCTCACCGCT--CGCGGTTGGTCTAAATTCGAGTCCT-CGGCGATGAAG-CGCC-GCGACGATCGGTGGGAATGCCTTT--GGCTGCCTCGTTCGGAGTCGCGCGCGCTCGTCGATCGGGACGCTTTCGACCCTTTTA-GGCATCGCGAC-GT??A-T??{GT}CGCATCGC?--CCCAAGG???????????????------------------------ Lavatera_arborea ????????????????????????????????????????AACGTGTTATCGAC--CAACCGATCGAGGGGG-TGCGGATGCATCCTTGCCCCGAACCCCCTCGATGCCTCGGCGCGCCAAGCCTTGCCGCATCCGTCCTCGGGCGGGTGTCCTGGGCCCCGTCGCGCCCCG---AGGCAAAACGAACAACCCCCGGCGCGAATCGCGTCAAGGAATAAAAAATGAAAAGAGCGCGTGTTTCGTTGTCGTCG--------------------GGCAACAAACACGTCACTCTCGTCGTGAAAATAAAAAACGACTCT-CGGTAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAG-AATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGG-CACGTCTGCCTGGGTGTCACGCATCGTCGCCCCCGTCAAACCCCGAGCCCTAGGGCCGGGATTGACGCGCGGGCGGAAATTGGCCTCCCGTGCGCTCACCGCT--CGCGGTTGGTCTAAATTCGAGTCCT-CGGCGATGAAG-CGCC-GCGACGATCGGTGGGAACGCCTTT--GGCTGCCTCGTTCGGAGTCGCGCGCGCTCGTCGATCGGGACGCTTTCAACCCTTTAA-GGCATCGTGAC-ATCGA-TGCTCGCATCGCGACCCC???????????????????------------------------ Lavatera_assurgentiflora ?????TCATTGTCGAAACCTGCCAACCAGAACGACCCGCGAACGTGTTATCGAA--CAACCGATCGAGGGGG-TGCGGATGCATCCTTGCCCCGAGCCCCCTCGATGCCTCGGCGCGCCGAGCCTTGCCGCATCCGTCCTCGGGCGGGTGTCCCGGGCCCCGTCGCGCTCCG---AGGCAAAACGAACAACCCCCGGCGCGAATCGCGTCAAGGAATAAAAAATGAAAAGAGTGCGTGTTTCGTTGTCGTAT--------------------GGCAGCGAGGGCGTCGCTCTCGTCGTGAAAATAAAAAACGACTCT-CGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAG-AATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGG-CACGTCTGCCTGGGTGTCACGCATCGTCGCCCCCGTCAAACCCCGAGCCCTCGGGCCGGGATCGACGCGCGGGCGGAAATTGGCCTCCCGTGCGCTCACCGCT--CGCGGTTGGTCTAAATTCTAGTCCT-CGGCGATGGAG-CGCC-GCGACGATCGGTGGGAACGCCTTT--GGCTGCCTCGTTCGGAGTCGCGCGCGTTCGTCGATCGGGACGCTTTCGACCCTTTAA-GGCATCGCGAC-GTCGA-TGCTCGCATCGCGACCCCA-GGTCAGGCGGGG?????------------------------ Lavatera_cretica ?????????????????????CCTAGCAGAACGACCCGCGAACGTGTTATCGAA--CAACCGATCGAGGGGG-TGCGGATGCATCCTTGCCCCGAGCCCCCTCGATGCCTCGGCGCGCCGA?CCTTGCCGCATCCGTCCTCGGGCGGGTGTCCCGGGCCCCGTCGCGCTCCG---AGGCAAAACGAACAACCCCCGGCGCGAATCGCGTCAAGGAATAAAAAATTAAAAGAGTGCGTGCCCCGTTGTCGTAT--------------------GGCAGCGAGGGCGTCACTCTCGTCGTGAAAATTAAAAACGACTCT-CGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAG-AATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGG-CACGTCTGCCTGGGTGTCACGCATCGTCGCCCCCGTCAAACCCCGAGCCCTCGGGCCGGGATCGACGCGCGGGCGGAAATTGGCCTCCCGTGCGCACACCGCT--CGCGGTTGGTCCAAATTCGAGTCCT-CGGCGATGAAC-CGCC-GCGACGATCGGTGGGAACGCCTTT--GGCTGCCTCGTTCGGAGTCGCGCGCGCTCGTCGATCGGGACGCTTTCGACCCCTTAA-GGCATCGCGAC-GTCGA-TGCTCGCATGCGCACCCCA-GGTCAGGCGGGATA???------------------------ Lavatera_maritima ????????????????????????????????????????AACGTGATTTCAAA--CAACCGA?CGAGGGGG-CGAGGATGCATCCTTGCCCCGAACCCCCTCGACGCCTCGGTGCGCCTAGCCTCGCCGCATCCGCCCTCGGGCGGGTGTGACGGGCTTCGTCACGCTCCG---AGGCAAAACGAACAACCCCCGGCGCGAACCGCGTCAAGGAATAAAAAATGAAAAGAGTGCGTGCCCCGTTGTCGTCC--------------------GGCAGCGAGGATGTCACTCTAGTCGTGAAAATAAAAAACGACTCT-CGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAG-AATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGG-CACGTCTGCCTGGGTGTCACGCATCGTCGCCCCCGTCAAACCCCGAGCCCTCGGGCCGGGATTGATGCGCGGGCGGAAATTGGCCTCCCGTGCGCTCACCGCT--CGCGGTTGGTCTAAATTCGAGTCCT-CGGCGATGAAG-CGCC-GCGACGATCGGTGGGAATGCTTTT--GGCTGCCTCGTTCGGAGTCGCGCGCGCTCGTCGATCGGGACGCTTTCGACCCTTTTA-GGCATCGCGAC-GTCGA-TGGTCGCATACGC????????????????????????------------------------ Lavatera_olbia ????????????????????????????????????????AACGTGATATCAAACACAACCAATCGAGGGGG-CTCTTACCTATCCGTGCCCCGAACCCCCTCGATGCCTCGGCGTGCCCAGCCTCGCCACACACGCCCTCGGGCGGGTGCGATGGGTTTCGTGACGCTCCG---AGGCAAAACGAACAACCCCCGGCGCGAATCGCGTCAAGGAATAAAAAATTAAAAGGTTAATTGTTTCGGTGTTGGAA--------------------GG???????????????????????????????????????????-?????????????CTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATCCGATACTTGGTGTGAATTGCAG-AATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGG-CACGTCTGCCTGGGTGTCACGCATCGTTGCCCCCATCAAACCCCGAGCCCTCGGGCCACGGTTGATGCGCGGGCGGAAATTGGCCTCCCGTGCGCTCACCGCT--CGCGGTTGGTCTAAATTCGAGTCCT-CGGCGATGAAG-TGCC-GCGACGATCGGTGGGAATGCTTTT--GGCTGCCTCGTTCGGAGTCGTGCGCGCTCGTTGATCGGGACGCTCTTGACCCTTCTC-GGCATCGCAAT-GTCGA-TGCTCGCATCGCGACCCCA-GGTCAGGCGG???????------------------------ Lavatera_phoenicea ???????????????????????????????????????TAACGTGATATCAAA--CAACTAAATGAGGTGG-TGCGGATGTATCCTTGCACCAAACCCCCTCGATGCCTAAGTGTGCCTAGCCTTGCCACATTCGTTTTTGGGCAGGTG---TGATAGGTTTTGTCACACTCCAAGGCAAAACGAACAACCCCCGGCGCGAATTGCGTCAAGGAATAAAAAATGAAA?GAGTGCATGTTTACTTGTCGCCT--------------------GGCAGTGAGGATGTTACTTTTGTCGTGAAAATAAAAA?CGACTCT-CGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAG-AATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGG-CACGTCTGCCTGGGTGTCACGCATCGTTGCCCCCATCAAACCCTGAGCCCTTGGGCTACGGTTGATGTGTGGGCGGAAATTGGCCTCCCGTGCGCTCACCGCT--CGCGGTTGGTCTAAATTTGAGTCCT-TGGCGAAT???-TGCC-GCGACAATCGGTGGGAATGCTTTT--AGCTGCCTCGTTCGGAGTCGCGTGTGCTCGTTGATTGGGACACTTTTGACCC?TTTT-??CATCGCAAT-GTGCA-TGCGCT?ATC??????????????????????????????????????????????????? Lavatera_trimestris ???????????????????????????????CGACCCGCGAACGTGATATCGAACACAAACAATCGGGGGGG-TGAGGATGCA?CCGTGCCCCGAACCCCCTCGATGCCTTGGTGCGCCCGGCCTTGCCACATACGCCCTCGGGCGGGTGCGACGGGTCTCGTCGCGCTCC---AAGGCAAAACGAACAACCCCCGGCGCGAATCGCGTCAAGGAATAAAAAATGAAA?GAGTGCATGCCCCGTTGTCGCAC--------------------GGCAGCGAGGATGTCACTTTTGTCGTGAAAATAAAAAACGACTCT-CGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAG-AATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGG-CACGTCTGCCTGGGTGTCACGCATCGTTGCCCCCATCAATCCTCGAGCCCTCGGGCCACGATTGATGCGCGGGCGGAAATTGGCCTCCCGTGCGCTCACCGCT--CGCGGTTGGTCTAAATTCGAGTCCT-CGGCGATGAAG-TGCC-GCGACAATCGGTGGGAATGCTTTT--GGCTGCCTCGTACGGAGTCGCGCGCGCTCGTTGATCGGGAAGCTCTTGACC?TTTCC-GGCATCGCAAC-GTCGA-TGCTCGCTACGCGACCCCAAGGTCAGGCGGG??????------------------------ Lavatera_venosa AAGGATCATTGTCGAAACCT-CCAACCAGAACGACCCGCGAACGTGTTATCGAA--CAACCGATCGAGGGGG-TGCGGTTGCATCCTTGCCCCGACCCCCCTCGATGCCTCGGCGCGTCGAGCCTTGCCGCATCCGTCCTCGGGCGGTTGTCCCGGGCCCCGTCGCGCTCCG---AGGCAAAGCGAACAACCCCCGGCGCGAATCGCGTCAAGGAATAAAAAATGAAAAGAGTGCGTGTTTCGTTGTCGTAT--------------------GGCAGCGAGGGCGTCGCTCTCGTCGTGAAAATAAAAAACGACTCT-CGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAG-AATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGG-CACGTCTGCCTGGGTGTCACGCATCGTCGCCCCCGTCAAACCTCGAGCCCTCGGGCCGGGATTGACGCGCGGGCGGAAATTGGCCTCCCGTGCGCTCACCGCT--CGCGGTTGGTCTAAATTCGAGTCCT-CGGCGATGAAG-CGCC-GCGACGATCGGTGGGAACGCCTTT--GGCTGCCTCGTTCGGAGTCGCGCGCGTTCGTCGATCGGGACGCTTTCGACCCTTTAA-GGCATCGCGAC-GTCGA-TGCTCGCATCGCGACCCCA-GGTCAGGCGGG??????------------------------ Malva_nicaensis ----------GTCGAAACCTGCCTAGCAGAACGACCCGCGAACGTGTTATCGAA--CAACCGATCGAGGGGG-TGCGGATGCGTCCTTGCCCCGAGCCCCCTCGATGCCTCGGCGCGCCGAGCCTTGCCGCATCCGTCCTCGGGCGGGTGTCCCGGGTTTCGTCGTGCTCCG---AGGCAAAACGAACAACCCCCGGCGCGAATCGCGTCAAGGAATAAAAAATGAAAAGAGTGCGTGTTTCGTATCAGTAT--------------------GGCAGCGAGGGCGTCACTCTCGTCGTGAAAATT???----------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTCGCCCCCGTCAAACCCCGAGCCCTCGGGCCGGGATCGACGCGCGGGCGGAAATTGGCCTCCCGTGCGCACACCGCT--CGCGGTTGGTCTAAATTCGAGTCCT-CGGCGATGAAG-CGCC-GCGACGATCGGTGGGAACGCCTTT--GGCTGCCTCGTTCGGAGTCGCGCGCGCTCGTCGATCGGGACGCTTTCGACCCCTTAA-GGCATCGCGAC-GTCGA-TGCTCGCATCG-------------------------------------------------- Malva_parviflora ??????????????????????CTAGCAGAACGACCCGCGAACGTGTTATCGAA--CAACCCATCGAGGGGG-TGCGGATGCATCCTCGCCCCGAGCCCCCTCGACGCCTCGG??CGCCCGACCTCTCCGCATCCGTCCTCGGGCGGGTGTCCCGGGTCTCGTCGTGCTCCG---GGGCAAAACGAACAACCCCCGGCGCGAATCGCGTCAAGGAATAAAAAATGAAAAGAGTGCGTGTTTCGTTGTCGTAT--------------------GGCAGCGAGGGCGTTACTCTCGTCGTGAAAATTAAAAACGACTCT-CGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAG-AATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGG-CACGTCTGCCTGGGTGTCACGCATCGTCGCCCCCGTCAAACCCCGAGCCCTCGGGCCGGGATTGATGCGCGGGCGGAAATTGGCCTCCCGTGCGCTCACCGCT--CGCGGTTGGTCTAAATTCGAGTCCT-CGGCGATGAAG-CGCC-GCGACGATCGGTGGGAACGCCTTT--GGCTGCCTCGTTCGGAGTCGCGCGCGCTCGTCGATCGGGACGCTTTCGACCCTTTAA-GGCATCGCGAC-GTCGA-TGCTCGCATCC?????????????????????????????????????????????????? Malva_sylvestris ???????????????????????????????CGACCCGCGAACGTGTTATCGAA--CAACCGATCGAGGGGG-TGCGGATGCATCCTGGCCCCGAGCCCCCTCGATGCCTCGGCGCGCCGAGCCTTGCCGCATCCGTCCTCGGGCGGGTGTCCCGGGTTTCGTCGCGCTCCG---AGGCAAAACGAACAACCCCCGGCGCGAATCGCGTCAAGGAATAAAAAATGAAAAGAGTGCGTGTTTCGTTGTCGTAT--------------------GGCAGCGAGGGCGTTACTCTCGTCGTGAAAATAAAAAACGACTCT-CGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAG-AATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGG-CACGTCTGCCTGGGTGTCACGCATCGTCGCCCCCGTCAAACCCCGAGCCCTCGGGCCGGGATCGACGCGCGGGCGGAAATTGGCCTCCCGTGCGCTCACCGCT--CGCGGTTGGTCTAAATTCGAGTCCT-CGGCGATGGAG-CGCC-GCGACGATCGGTGGGAACGCCTTT--GGCTGCCTCGTTCGGAGTCGCGCGCGTTCGTCGATCGGGACGCTTTCGACCCTTTAA-GGCATCGCGAC-GT????????????????????????????????????????????????????????????????? ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M10896] TITLE Lavatera_cpDNA_RFLP; LINK TAXA = Taxa1; DIMENSIONS NCHAR=222; FORMAT DATATYPE=Standard SYMBOLS= "0 1" MISSING=? GAP= -; CHARSTATELABELS 1 ASE1.1, 2 ASE1.2, 3 ASE1.3, 4 ASE1.4, 5 ASE1.5, 6 ASE1.6, 7 ASE1.7, 8 ASE1.8, 9 ASE1.9, 10 ASE1.10, 11 ASE1.11, 12 ASE1.12, 13 ASE1.13, 14 ASE1.14, 15 ASE1.15, 16 ASE1.16, 17 ASE1.17, 18 ASE1.18, 19 ASE1.19, 20 ASE1.20, 21 ASE1.21, 22 AVA1.1, 23 AVA1.2, 24 AVA1.3, 25 AVA1.4, 26 AVA1.5, 27 AVA1.6, 28 AVA1.7, 29 AVA1.8, 30 AVA1.9, 31 AVA1.10, 32 AVA1.11, 33 AVA1.12, 34 AVA2.1, 35 AVA2.2, 36 AVA2.3, 37 AVA2.4, 38 AVA2.5, 39 AVA2.6, 40 AVA2.7, 41 AVA2.8, 42 AVA2.9, 43 AVA2.10, 44 AVA2.11, 45 AVA2.12, 46 BCL1.1, 47 BCL1.2, 48 BLC1.3, 49 BCL1.4, 50 BCL1.5, 51 BCL1.6, 52 BCL1.7, 53 BCL1.8, 54 BCL1.9, 55 BCL1.10, 56 BCL1.11, 57 BCL1.12, 58 BAMH1.1, 59 BAMH1.2, 60 BAMH1.3, 61 BAMH1.4, 62 BAMH1.5, 63 BAN1.1, 64 BAN1.2, 65 BAN1.3, 66 BAN2.1, 67 BAN2.2, 68 BAN2.3, 69 BAN2.4, 70 BAN2.5, 71 BAN2.6, 72 BAN2.7, 73 BAN2.8, 74 BGL2.1, 75 BGL2.2, 76 BGL2.3, 77 BGL2.4, 78 BGL2.5, 79 BGL2.6, 80 BGL2.7, 81 BGL2.8, 82 BGL2.9, 83 BGL2.10, 84 BGL2.11, 85 BGL2.12, 86 BSTX1.1, 87 BSTX1.2, 88 BSTX1.3, 89 BSTX1.4, 90 BSTX1.5, 91 BSTX1.6, 92 BSTX1.7, 93 BSTX1.8, 94 BSTX1.9, 95 BSTX.10, 96 BSTX.11, 97 CLA1.1, 98 CLA1.2, 99 CLA1.3, 100 CLA1.4, 101 CLA1.5, 102 CLA1.6, 103 CLA1.7, 104 CLA1.8, 105 CLA1.9, 106 CLA1.10, 107 CLA1.11, 108 CLA1.12, 109 CLA1.13, 110 CLA1.14, 111 DRA1.1, 112 DRA1.2, 113 DRA1.3, 114 DRA1.4, 115 DRA1.5, 116 DRA1.6, 117 DRA1.7, 118 DRA1.8, 119 DRA1.9, 120 DRA1.10, 121 DRA1.11, 122 DRA1.12, 123 dra1.13?, 124 DRA1.14, 125 DRA1.15, 126 DRA1.16, 127 DRA1.17, 128 DRA1.18, 129 DRA1.19, 130 DRA1.20, 131 DRA1.21, 132 DRA1.22, 133 DRA1.23, 134 DRA1.24, 135 DRA1.25, 136 DRA1.26, 137 ECOR1.1, 138 ECOR1.2, 139 ECOR1.3, 140 ECOR1.4, 141 ECOR1.5, 142 ECOR1.6, 143 ECOR1.7, 144 ECOR1.8, 145 ECOR1.9, 146 ECOR1.10, 147 ECOR1.11, 148 ECOR1.12, 149 ECOR1.13, 150 ECOR1.14, 151 ECOR1.15, 152 ECOR1.16, 153 ECOR1.17, 154 ECOR1.18, 155 ECOR1.19, 156 ECOR1.20, 157 ECOR5.1, 158 ECOR5.2, 159 ECOR5.3, 160 ECOR5.4, 161 ECO109.1, 162 ECO109.2, 163 ECO109.3, 164 HAE2.1, 165 HAE2.2, 166 HAE2.3, 167 HAE2.4, 168 HAE2.5, 169 HAE2.6, 170 HINC2.1, 171 HINC2.2, 172 HINC2.3, 173 HINC2.4, 174 HIND3.1, 175 HIND3.2, 176 HIND3.3, 177 HIND3.4, 178 HIND3.5, 179 HIND3.6, 180 HIND3.7, 181 HIND3.8, 182 HIND3.9, 183 HIND3.10, 184 NCI1.1, 185 NCI1.2, 186 NCI1.3, 187 NCI1.4, 188 NCI1.5, 189 NCI1.6, 190 NCI1.7, 191 NCI1.8, 192 NCI1.9, 193 NCI1.10, 194 NCI1.11, 195 NSI1.1, 196 NSI1.2, 197 NSI1.3, 198 NSI1.4, 199 NSI1.5, 200 NSI1.6, 201 NSI1.7, 202 NSI1.8, 203 NSI1.9, 204 XMN1.1, 205 XMN1.2, 206 XMN1.3, 207 XMN1.4, 208 XMN1.5, 209 XMN1.6, 210 XMN1.7, 211 XMN1.8, 212 XMN1.9, 213 XMN1.10, 214 XMN1.11, 215 XMN1.12, 216 XMN1.13, 217 XMN1.14, 218 XMN1.15, 219 XMN1.16, 220 XMN1.17, 221 XMN1.18, 222 XMN1.19, ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ] [ . . . . . . . . . . . . . . . . . . . . . . ] Alcea_rosea 010100001110011001101011110000010100100010010110111110100111101110101010100100011011110000000001110111101100100001110001110101001000000011100100101100000110001110000000000110101000000011111100010011000001100011110100010100 Althaea_officinalis 000110001111011001101111110000010000111000001111001100000011100010101111000010011011110000000010110111101100100001111010101100101000000011101100101110000110111010011100000110110000000011011100010011000001110011110001010100 Anisodontea_capensis 010100100000011100111111110000010100101010001111001110000110001000100011100110001101111000001010110111111100000001010011110110000010000011110100101100110110111010001000001110001000010011000100010011000001101111011101010001 Kitaibela_vitifolia 010100001110011001101111100000010100101000001110001111000111100010101010100111011011110011000010111111100111100001111001100100001000001011100100101100000110111010001000000110101000000011011100010011000001100011110101010100 Lavatera_acerifolia 11110000110010000000010111?1?1111101101010011110001110010110010010111001100110100100011010101000110101101110111000010001000100000000001001100111110000101100110000101001111011101011001100010101100010000000000001000101110000 Lavatera_arborea 111101011100110000000101110101101101111110011110001110011110010011111001100110100100011010101000110101101110110110010001010100010000101001100111110000101100110000101001111011101011000100010101100010001010000001000101110000 Lavatera_assurgentiflora 111100001100100000000101110101111101101010011110001110010110010010111001100110100100011010101000110101101110111011010001000100010000011001100111110000101100110000101001111011101011001100010101100010000000000001000101110000 Lavatera_cretica 111000001100100000000101111101101101101010011110001110010110010010111001100110100100011010101000110101101110111001010001011100001000001001100110110001101101110000101001111011101011001100010001100010000000000001000111110000 Lavatera_maritima 11110000110001110010010011?1?1111111101011011110000010010110010010101000100110100100011010100000110101101110110001010001110100000000011101000011100100101110110001101001111010101010000100010101010100000000100000010101110000 Lavatera_olbia 11110000110011000000010111?1?11111011010100111100011100101100100101110011001101001000110101010001101011011101100010100010111000000000010011001111100001011001100001010111110111010100001000101010?0010000100000001000101110000 Lavatera_phoenicea 111100001100011100000101110111111101101010011110001110010110010010111000110110100100011010100000010101101110110001010001110100000000000001100111101100001110110000101001111010101000000100010111010010000000100001010101110100 Lavatera_trimestris 111100001100011010100101010111101101001010111000001110010000010000011010101110100100001110101100100101001010111001100101111000010100000000100111010100101110110001101011111000101110100100010111010010100000100001010101111000 Lavatera_venosa 111100001100100000000101110101111101101010011110001110010110010010111001100110100100011000101000110101101110111011010001010100010000000001100111110000101100110000101001111011101011001100010101010010000000000001000101110000 Malva_nicaensis 1110000011001000000001011101011011011010100111100011100101100100101110011001101001000110101010001100011011101110110100010101000010000010?1100110110001101101110000101001111011101011001100010001101010000000000001000111110000 Malva_parviflora 111000001100100000000101110101101101101010011110001110010110010010111001100110100100011010101000110101101110100011010001010100001000001001100110110000101100110000101001111011101011001100010001101010000000000001000101110000 Malva_sylvestris 111100001000100000000101110101101101001010011010001110010110010010111001100110100100011010111000110100001110110011010001010100010001001011100111010000101000110000101001111011101011001100010111100010010000000001000101100010 ; END; BEGIN TREES; TITLE Lavatera; LINK TAXA = Taxa1; TRANSLATE 1 Alcea_rosea, 2 Althaea_officinalis, 3 Anisodontea_capensis, 4 Kitaibela_vitifolia, 5 Lavatera_acerifolia, 6 Lavatera_arborea, 7 Lavatera_assurgentiflora, 8 Lavatera_cretica, 9 Lavatera_maritima, 10 Lavatera_olbia, 11 Lavatera_phoenicea, 12 Lavatera_trimestris, 13 Lavatera_venosa, 14 Malva_nicaensis, 15 Malva_parviflora, 16 Malva_sylvestris; TREE Fig._1B = [&R] (4:0.144603305,(2:0.03609228,(1:0.12275745,(3:0.02976483,(11:0.03521087,(9:0.05186297,(12:0.03892005,(10:0.06529683,(6:0.03087667,((15:0.02227667,(8:0.0188556,14:0.01412784):0.00371148):0.0022802,(16:0.00661574,(13:0.01088549,(5:0.03864191,7:0.00349168):0.0):0.00690533):0.00278833):0.00356407):0.04179756):0.00142396):1.95E-6):0.08265809):0.04359538):0.03685074):6.5E-7):0.144603305); TREE Fig._1A = [&R] (4:0.13462021,((1:0.11873106,2:0.03378928):0.01028022,(3:0.03052357,(11:0.03241945,(10:0.05274574,(12:0.02972701,((5:0.00736672,9:0.01919986):0.0150979,(6:0.02884882,(15:0.02242637,((8:0.01821984,14:0.01480742):0.00516151,(16:0.00563789,(7:0.00201587,13:0.01168275):0.00652654):0.0044225):0.00215607):0.00388557):0.01643612):0.03527772):0.0046875):0.07308549):0.0435101):0.02809982):0.13462021); END;