#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 26, 2024; 17:21 GMT TreeBASE (cc) 1994-2008 Study reference: Doyle J., & Doyle J. 1993. Chloroplast DNA phylogeny of the papilionoid legume tribe Phaseoleae. Systematic Botany, 18: 309-327. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S124] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=53; TAXLABELS Adenodolichos_rupestris Amorpha_fruticosa Amphicarpaea_bracteata Atylosia_lineata Baphia_racemosa Bolusafra_bituminosa Cadia_purpurea Cajanus_cajan Calopogonium_caeruleum Canavalia_ensiformis Centrosema_virginianum Cleobulia_crassistyla Clitoria_ternatea Cologania Desmodium_grandiflorum Dioclea_virgata Dipogon_lignosus Dumasia_villosa Eriosema_psoralioides Erythrina_sousae Galactia_striata Glycine_tabacina Gymnocladus_dioica Hardenbergia_violacea Indigofera Kennedia_rubicunda Kunstleria_blackii Lablab_purpureus Lespedeza_cuneata Lonchocarpus_eriocarinalis Macroptilium_lathyroides Macrotyloma_geocarpa Myroxylon_balsamum Neonotonia_wightii Ophrestia_hedysaroides Oxyrhynchus_volubilis Pachyrhizus_tuberosus Phaseolus_sonorensis Pseudeminia_comosa Pseudovigna_argentea Psophocarpus_scandens Pueraria_phaseoloides Ramirezella_strobilophora Rhynchosia_clivorum Shuteria_vestita Sphenostylis_erecta Strophostyles_helvola Tephrosia_rhodesica Teramnus_labialis Teyleria_koordersii Vandasia_retusa Vigna_elegans Xanthocercis_zambesiaca ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2083] TITLE Appendix_1; LINK TAXA = Taxa1; DIMENSIONS NCHAR=202; FORMAT DATATYPE=Standard SYMBOLS= "0 1" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 ] [ . . . . . . . . . . . . . . . . . . . . ] Adenodolichos_rupestris 0101101101011010100011101100100000100111100001111001001010111100101101100010111101110011101010010001100101001011000100000101000001110111101100100110101001100011000111101010010101111000100110001110010010 Amorpha_fruticosa 0101101111001000101011101100100000100111000001111001001010111000101101100010111101000010100010010000101101001010100100000101000001110111101101110100001001000010000111101110010101101000100110000110010010 Amphicarpaea_bracteata 0101001101011010100011101110100000100111100000011001001010111100101101100010111101000010000010010000101101001011100000000101000001110111101100100110101001100010000111101010010101100000100110000110010010 Atylosia_lineata 0101101101011010100011101100100000100110100000111001001010111100101101100010011101110011100010010001010101001011000100000101110001110111101100100110101001100011000111101010010101111100100110000110010010 Baphia_racemosa 0101001111001000110011101100100000101011100000110101000010111101101101100010111100001110100010010001101101001011001100000101000001111111101100110100001001100110000111101011010101100000000110000110010010 Bolusafra_bituminosa 0101101101011010100011101100100000100111100000111001001010111100101101100010011101110011100010010001010101001011000100000101110001110111101100100110101001100011000111101010010101111000100110001110010010 Cadia_purpurea 0101101111001000110011111100100000101111100000111001001010111100101101100010111101000010110010010000101101001011001100000101000001111111101101110100001101000010000111001011010101111000100110000110010010 Cajanus_cajan 0101101101011010100011101100100000100111100000111001001010111100101101100010011101110011101010010001010101001011000100000101110001110111101100100110101001100011000111101010010101111000100110000110010010 Calopogonium_caeruleum 0101001101011010110011101110100000100111100000011001001010111000101101100010111101000011100010010000101101001011100000000101000001110111101100100110101011100010000111101010010101100000100110001110010010 Canavalia_ensiformis 0101011101001010101011101100111000100111100000011001001010111100111111100010011101000010100010010000101111001001100100001101000001110111111110100100101001100010010111101010010101001000100110000110110010 Centrosema_virginianum 0101101101000000100111111100100000110010111111011001001000111000101101100010111111000010100010100000101101001011000110000101000000110111101101100100101011100010000111110010000001101000100110100101010010 Cleobulia_crassistyla 0101011101001010100011101100111000100111100000011001001000111?00010111100010011101000010100010010000101111001001100100001101000001110111111110100100101001100010010111101010010101001000100010000110110010 Clitoria_ternatea 0101101101000000100111111100100000100110101011011001001000100100101101100000011101000010100000001000101101001011000110000101000001110111101101100100111001100010000111101010000001101010000110100101010010 Cologania 0101001101011010100011101110100000100111100000011001001010111100101101100010111101000010000010010001101101001011100100000101000001110111101100100110101001100010000111101010010000000000100111000110010010 Desmodium_grandiflorum 0101001001011111110011101100100000100111100000011001101010111100101101100010011101000000000010010000010100000011000100000100000011110111101100000111111001100010000111101011010101111000011101000110010101 Dioclea_virgata 0101011101001010100011101100111000100111100000011001001000111000010111100010011101000010100010010000101111001001100100001101000001110111111110100100101001100010010111101010010101001000100010000110110010 Dipogon_lignosus 0101101101011010100011101100100001100111100000011001001000101100101101100111111110001110000010010000101101001011000101010101000001110111101100100110101001100010000111101011010111101001100110000110011010 Dumasia_villosa 0101001101011010100011101110100000100111100000011001001010111100101101100010111101000010000010010000101101001011100100000101000001110111101100100110101001100010000111101010010101100000100110001110010010 Eriosema_psoralioides 0101101101011010100011101100100000100111000000111001001010111100101101100010011101110011101010010001010101001011000100000101110001110111101100100110101001100011000111101010010101111000100110001110010010 Erythrina_sousae 0101101001011010100011101100100000100110100000011001001010111000101101100010011101000010000010000100101101001011000100000101010111110111101100000110101001100010000111101010011101100000000110001110010010 Galactia_striata 0101011101001010101011101000111000100111100000011001001000111000111101100010011101000010100010010000101111001001100100001101000001110111111110100100101001100010010111101010010101001000100110000110110010 Glycine_tabacina 0101001101011010100011101110100010100111100000011001001010111100101101100010111101000010000010010001101101001011100000000101000001110111101100100110101001100010000111101010010101100000100110001110010010 Gymnocladus_dioica 1101101111001000100111101101100000100111000000111001001011111100001101100010100101000010000001001001101111001011100110000101000001111111101101101100001001100010000111101011010101100010100110100111010010 Hardenbergia_violacea 0101001101011010101011101100100000100111100000011001101010111110101101100010111101000000000010010000101100010011000100000100001010110111101100100110111001100010000111101010010101101000100111000110010001 Indigofera 0101101101001000101011101100100000101010100000011011001010111100101101100000111101000010100010010000101101101011001100000101000001110111111101100100001001000010000111101011010101111000100110000110010010 Kennedia_rubicunda 0101001101011010101011101100100000100111100000011001101010111100101101100010111101000000000010010000101101001011000100000100001011110111101100100110111001100010100111101010010101111000100111000110010001 Kunstleria_blackii 0101101101000000100011101100100000100111100000011001001010011100111111100010111101000010000010010000101101001011001100000101000001110111101101100100101101111010011111101010010111111000000110000110010010 Lablab_purpureus 0101101101011000100011101100100000100111100000011001001000101000101101100110111110000010000010010000101101001011000100000101000001110111101100100110001001100010000111101011110111101101100110000110011010 Lespedeza_cuneata 0101000011011110100011101100100000100111100000011001011110011100101101100010111101000000000010010000010100000011000100000100000011110111101100000111111001100010000111101011000101111000011110011110010101 Lonchocarpus_eriocarinalis 0101001101001010100010001100111100100110100000011001001010111100101101100010111111000010100010010000101101000100101100000101000001110111101100100100101001100010010111101010010111111000100110000110110010 Macroptilium_lathyroides 0101101101011010100011101000100000100111100000011001001000101100101101100110111110001010000010010000101101001011110100000101000001110111101100100110101001100010000111101010010111101000100110000110011010 Macrotyloma_geocarpa 0101101101011010100011101100100000100111100000011001001000101100101101100110111110000010000010010000101101001011000101010101000001110111101100100110101001100010000111101010010111111100100110000110011010 Myroxylon_balsamum 0101001111001000101011101100100000101111100000111001000110111100101101100010011101000010100010010011101101001011001100000101000001111111101100110100001001100010000111000010010101111000100110100110010010 Neonotonia_wightii 0101001101011010100011101110100000100111100000011001001010111100101101100010111101000010000010010000101101001011100000000101000001110111101100100110101001100010000111101010010101100000100110001110010010 Ophrestia_hedysaroides 01011011010010101001100001001010001001111000000110010010001111001011011000101011010000101001101000001011010010?1000100110101000000110111101101100100101001100010010111101010010111110000000110000101010010 Oxyrhynchus_volubilis 0101101101011010100011101100100000100111100000011001001000100100101101100110111110000010000010010000101101001011000101010101000001110111101100100110101001100010000111101010010111101000100110000110011010 Pachyrhizus_tuberosus 0101001101011010110011101110100000100110100000011001001010111100101101100010111101000011100010010000101101001011000000000101000001111111101100100110101011100010000111101010010101100000100110001110010010 Phaseolus_sonorensis 0101101101011010100011101100100000100111100000011001001000101000101101100110111110000010000010010000101101001011000100000101000001110111101100100110101001100010000111101010010111101000100110000110011010 Pseudeminia_comosa 0101001101111010100011101110100000100111100000011001001010111100101101100010111101000010000010010000101101001011100100000101000001110111101100100110101001100010000111101010010101100000100110001110010010 Pseudovigna_argentea 0101001101111010100011101110100000100111100000011001001010111100101101100010111101000010000010010000101101001011100100000101000001110111101100100110101001100010000111101010010101100000100110001110010010 Psophocarpus_scandens 0101101001011010100011101??????????00110100000010001001010111?00101101100010111110000010000010010000101101001011000100000101000000110111101100000110101001100010000111101010010111101000100110001110011010 Pueraria_phaseoloides 0101001101111010100011101110100000100111100000011001001010111100101101101010111101000010000010010000101101001011100100000101000001110111101100100110101001100010000111101010010101100000100110001110010010 Ramirezella_strobilophora 0101101101011010100011101100100000100111100000011001001000101000101101100110111110000010000010010000101101001011000101010101000001110111101100100110101001100010000111101010010111101000100110000110011010 Rhynchosia_clivorum 0101101101011010100011101100100000100111000000111001001010111100101101100010011101110011101010010001010101001011000100000101110001110111101100100110101001100011000111101010010101111000100110001110010010 Shuteria_vestita 0011001101010010101011101100100000101011100000001001101010111100001101110010011101000000000011000000101101001011000100000100000011110111101100100110101001100010000111101011010101100101000111000110010010 Sphenostylis_erecta 0101101101011010100011101100100000100111100000011001001000101000101101100110111110001110000010010000101101001011000100000101000001110111101100100110101001100010000111101010010111100000100110000110011010 Strophostyles_helvola 0101101101011010100011101000100000100111100000011001001000101100101101100110111110001010000010010000101101001011110101010101000001110111101100100110101001100010000111101010010111101000100110000110011010 Tephrosia_rhodesica 0101001101001010100010001100111100100111100000011011001010111100101101100010111111000010000010010000101101001001101100000101000001110111101100100100101001100010000111101010000111111000100110000110110010 Teramnus_labialis 0101001101011010100011101110000000110011100000011001001010111100101101100010111101000010000010010000101101001011100000000101000001110111101100100110101001100010000111101010010101100000100110000110010010 Teyleria_koordersii 0101001101011010100011101110100000100111100000011001001010111100101101100010111101000010000010010000101101001011100000000101000001110111101100100110101001100010000111101010010101100000100110001110010010 Vandasia_retusa 0101001101011010101011101100100000100111100000011001101010111110101101100010111101000000000010010000101101001011000100000100001011110111101100100110111001100010000111101010010101111000100111000110010001 Vigna_elegans 0101101101011010100011101100100000100111100000011001001000101000101101100110111110000010000010010000101101001011000100000101000001110111101100100110101001100010000111101010010111001000100110000110011010 Xanthocercis_zambesiaca 0101101111001000101011101100100000100111100000111001001010111100001101100010101101000010100010010000101101001011001100000111000001111111101101100100001001000010000111100011010101111100100110100110010010 ; END; BEGIN TREES; TITLE Tb4844; LINK TAXA = Taxa1; TRANSLATE 1 Amphicarpaea_bracteata, 2 Cologania, 3 Dumasia_villosa, 4 Glycine_tabacina, 5 Neonotonia_wightii, 6 Pueraria_phaseoloides, 7 Pseudeminia_comosa, 8 Pseudovigna_argentea, 9 Shuteria_vestita, 10 Teramnus_labialis, 11 Teyleria_koordersii, 12 Dipogon_lignosus, 13 Lablab_purpureus, 14 Macroptilium_lathyroides, 15 Macrotyloma_geocarpa, 16 Oxyrhynchus_volubilis, 17 Phaseolus_sonorensis, 18 Psophocarpus_scandens, 19 Sphenostylis_erecta, 20 Strophostyles_helvola, 21 Ramirezella_strobilophora, 22 Vigna_elegans, 23 Erythrina_sousae, 24 Clitoria_ternatea, 25 Centrosema_virginianum, 26 Ophrestia_hedysaroides, 27 Gymnocladus_dioica, 28 Calopogonium_caeruleum, 29 Canavalia_ensiformis, 30 Cleobulia_crassistyla, 31 Dioclea_virgata, 32 Galactia_striata, 33 Pachyrhizus_tuberosus, 34 Adenodolichos_rupestris, 35 Atylosia_lineata, 36 Bolusafra_bituminosa, 37 Cajanus_cajan, 38 Eriosema_psoralioides, 39 Rhynchosia_clivorum, 40 Hardenbergia_violacea, 41 Kennedia_rubicunda, 42 Vandasia_retusa, 43 Desmodium_grandiflorum, 44 Lespedeza_cuneata, 45 Amorpha_fruticosa, 46 Indigofera, 47 Kunstleria_blackii, 48 Lonchocarpus_eriocarinalis, 49 Tephrosia_rhodesica, 50 Baphia_racemosa, 51 Cadia_purpurea, 52 Myroxylon_balsamum, 53 Xanthocercis_zambesiaca; TREE Fig._2 = [&R] (27,45,53,(51,(50,52)),46,(47,(26,(25,24)),(((((31,30),32),29),(48,49)),((((39,38),37,36,35),34),(((((20,14),12),22,21,19,17,16,15,13),18),(((28,33),(6,7,8),11,10,5,4,3,2,1),(23,(9,((41,(40,42)),(43,44)))))))))); TREE Fig._3 = [&R] (27,45,((51,(50,52)),(53,(46,(47,((26,(24,25)),(((48,49),(29,(32,(30,31)))),((34,((38,39),(37,(36,35)))),((18,((13,17,19,22),(15,16,21,(12,(14,20))))),((23,(9,((43,44),(41,(40,42))))),((7,8,6),3,(2,(4,((1,10),5,11,(28,33))))))))))))))); END;