#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 24, 2024; 5:38 GMT TreeBASE (cc) 1994-2008 Study reference: Rooney latham S., Eskalen A., & Gubler W. 2004. Teleomorph formation of Phaeoacremonium aleophilum, cause of esca and grapevine decline in California. Plant Disease, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1260] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=12; TAXLABELS F1_Progeny_Isolates_67_and_80 Isolate_67_mata Isolate_80_matb Phaeoacremonium_aleophilum_AF017651 Phaeoacremonium_aleophilum_AF266647 Phaeoacremonium_angustius_AF197974 Phaeoacremonium_angustius_CBS24995 Phaeoacremonium_inflatipes Phaeoacremonium_mortoniae Phaeoacremonium_viticola Phialophora_richardsiae Togninia_minima ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1301] TITLE ITS_Phaeoacremonium_aleophilum; LINK TAXA = Taxa1; DIMENSIONS NCHAR=516; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] F1_Progeny_Isolates_67_and_80 CC-AAACCCTTTGTGAACATACCTGTTTTCGTTGCTTCGGCAGGT-CGGGGGCCAACCCCG--CCCGCCGCCG---GACTCCCCCTCGCGGGGCTGCGCCGGCGGGCCTGCCGGAGGGCACA--GACTCTGTATTCAAAAACGTACCTCTCTGAGTTATCTTT-ACAAATAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCCCTGGTTGCCTGGTGTTGGGGCGCCGCGTCCCCTC-AGCGGGC-GCGGGCCCCGAAAGTCAGTGGCGGGCTCGCCAGGACTCCGAGCGCAGTAGTTTACACCTCGCTGCGGAGGACCTGGCGGGTTACCCAGCCGTAAAACACCCCAAACTTCT-AAGGTTGACCTCGGA Isolate_67_mata CC-AAACCCTTTGTGAACATACCTGTTTTCGTTGCTTCGGCAGGT-CGGGGGCCAACCCCG--CCCGCCGCCG---GACTCCCCCTCGCGGGGCTGCGCCGGCGGGCCTGCCGGAGGGCACA--GACTCTGTATTCAAAAACGTACCTCTCTGAGTTATCTTT-ACAAATAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCCCTGGTTGCCTGGTGTTGGGGCGCCGCGTCCCCTC-AGCGGGC-GCGGGCCCCGAAAGTCAGTGGCGGGCTCGCCAGGACTCCGAGCGCAGTAGTTTACACCTCGCTGCGGAGGACCTGGCGGGTTACCCAGCCGTAAAACACCCCAAACTTCT-AAGGTTGACCTCGGA Isolate_80_matb CC-AAACCCTTTGTGAACATACCTGTTTTCGTTGCTTCGGCAGGT-CGGGGGCCAACCCCG--CCCGCCGCCG---GACTCCCCCTCGCGGGGCTGCGCCGGCGGGCCTGCCGGAGGGCACA--GACTCTGTATTCAAAAACGTACCTCTCTGAGTTATCTTT-ACAAATAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCCCTGGTTGCCTGGTGTTGGGGCGCCGCGTCCCCTC-AGCGGGC-GCGGGCCCCGAAAGTCAGTGGCGGGCTCGCCAGGACTCCGAGCGCAGTAGTTTACACCTCGCTGCGGAGGACCTGGCGGGTTACCCAGCCGTAAAACACCCCAAACTTCT-AAGGTTGACCTCGGA Phaeoacremonium_aleophilum_AF017651 CC-AAACCCTTTGTGAACATACCTGTTTTCGTTGCTTCGGCAGGT-CGGGGGCCAACCCCG--CCCGCCGCCG---GACTCTCCCTCGCGGGGCTGCGCCGGCGGGCCTGCCGGAGGGCACA--GACTCTGTATTCAAAAACGTACCTCTCTGAGTTATCTTT-ACAAATAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCCCTGGTTGCCTGGTGTTGGGGCGCCGCGTCCCCTC-AGCGGGC-GCGG-CCCCGAAAGTCAGTGGCGGGCTCGC-AGGACTCCGAGCGCAGTAGTTTACACCTCGCTGCGGAGGACCTGGCGGGTTACCCAGCCGTAAAACACCCCAAACTTCT-AAGGTTGACCTCGGA Phaeoacremonium_aleophilum_AF266647 CC-AAACCCTTTGTGAACATACCTGTTTTCGTTGCTTCGGCAGGT-CGGGGGCCAACCCCG--CCCGCCGCCG---GACTCCCCCTCGCGGGGCTGCGCCGGCGGGCCTGCCGGAGGGCACA--GACTCTGTATTCAAAAACGTACCTCTCTGAGTTATCTTT-ACAAATAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCCCTGGTTGCCTGGTGTTGGGGCGCCGCGTCCCCTC-AGCGGGC-GCGGGCCCCGAAAGTCAGTGGCGGGCTCGCCAGGACTCCGAGCGCAGTAGTTTACACCTCGCTGCGGAGGACCTGGCGGGTTACCCAGCCGTAAAACACCCCAAACTTCT-AAGGTTGACCTCGGA Phaeoacremonium_angustius_AF197974 CC-AAACCCTTTGTGAACATACCTGTTTCCGTTGCTTCGGCAGGT-CGGGGGTCACCCCCCG-CCCGCCGCCG----GGCCCCCCTCGC-GGGGTCGCCCGGCGGGCCTGCCGGAGGGCACA-AGACTCTGTATTTCAAAAC-TACCTCTCTGAGTTATCTTT-ACAAATAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCCCTGGTTGCCTGGTGTTGGGGCGCCGCGT-CCCCT-CGCGGGC-GCGGGCCCCCAAAGTCAGTGGCGGGCTCGCCAGGACTCCGAGCGCAGTAGTTTACACCTCGCTGCGGAGGACCTGGCGGGTTTCCCGGCCGTAAAACACCCCAAACTTTACAAGGTTGACCTCGGA Phaeoacremonium_angustius_CBS24995 CC-AAACCCTTTGTGAACATACCTGTTTTCGTTGCTTCGGCAGGT-CGGGGGCCAACCCCG--CCCGCCGCCG---GACTCCCCCTCGCGGGGCTGCGCCGGCGGGCCTGCCGGAGGGCAC--AGACTCTGTATTCAAAAACGTACCTCTCTGAGTTATCTTT-ACAAATAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCCCTGGTTGCCTGGTGTTGGGGCGCCGCGTCCCCTC-AGCGGGC-GCGGGCCCCGAAAGTCAGTGGCGGGCTCGCCAGGACTCCGAGCGCAGTAGTTTACACCTCGCTGCGGAGGACCTGGCGGGTTACCCAGCCGTAAAACACCCCAAACTTCT-AAGGTTGACCTCGGA Phaeoacremonium_inflatipes CC-AAACCCTTTGTGAACATACCTGTTTTCGTTGCTTCGGCAGGTTCAGGCGCTGCT-CCGGGCCTACCGCCGCGCGGGCCCGCTCTGCCGGGGTCGCCGGGCGGGCCTGCCGGAGGGCACA--GACTCTGTATTACAA--CGTACTTCTCTGAGTTATCTTTTACAAACAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCCCTGGTTGCCTGGTGTTGGGGCGCCGCGCACCCCT-AGCGGGCCGCGGGCCCCGAAAGTCAGTGGCGGGCTCGCCAGGACTCCGAGCGCAGTAATATTC-CCTCGCTGCGGAGGACCTGGTGGGTTACCCAGCCGTAAAACACCCCAAA-TTCTAAAGGTTGACCTCGGA Phaeoacremonium_mortoniae TC-AAACCCTTTGTGAACATACCTGTTT-CGTTGCTTCGGCAGGCCCGGGGGTCACTCCCCGGCCCGCCGCCG----GCACCCCCTCGCCGGGG-CGCATGGCGGGCCTGCCGGAGGGCACA--GACTCTGTATTCAAAAACGTACCTCTCTGAGTTATCTTT-ACAAACAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCCCTGGTTGCCTGGTGTTGGGGCGCCGCGT-CCCCC-AGCGGGC-GCGGGCCCCGAAAGTCAGTGGCGGGCTCGCCAGGACTCCGAGCGCAGTAGTTTACACCTCGCTGCGGAGGACCTGGCGGGTTTCCCGGCCGTAAAACACCCCAAATTTTACAAGGTTGACCTCGGA Phaeoacremonium_viticola CC-AAACCCTTTGTGAACATACCTGTTTCCGTTGCTTCGGCAGGT-CGGGGGTCACCCCCCG-CCCGCCGCCG----GGCCCCCCTCGC-GGGGTCGCCCGGCGGGCCTGCCGGAGGGCACA-AGACTCTGTATTTCAAAAC-TACCTCTCTGAGTTATCTTT-ACAAATAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCCCTGGTTGCCTGGTGTTGGGGCGCCGCGT-CCCCT-CGCGGGC-GCGG-CCCCGAAAGTCAGTGGCGGGCTCGCCAGGACTCCGAGCGCAGTAGTTTAC-CCTCGCTGCGGAGGACCTGGCGGGTTT-CCGGCCGTAAAACACCCCAAACTTCT-AAGGTTGACCTCGGA Phialophora_richardsiae CCCAAAACCCACCCGTACCTACCTACA--CGTTGCTTCGGCGG-------------TGCCG--CCG--CGGGG---GGTGCCCAGCTGCTGGGCCCCCCCGGGGCGCCCGCCGGAGGCCACTAAAACTCTTCTGTATCTCGCGTACCA-TCTGAGCGAA--TG-GCGAATAA-TAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGCCCTG----CCTGGCGTTGGGGCGCCGCGGCGGCGAGAGCCCCC-GCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGCA-ACAC-TCGCTCAGGGCGTCCCGGCGCGCG--TCGGCCGTAAAACACCCCAACTCACCAAAGGTTGACCTCGGA Togninia_minima CC-AAACCCTTTGTGAACATACCTGTTTTCGTTGCTTCGGCAGGT-CGGGGGCCAACCCCG--CCCGCCGCCG---GACTCCCCCTCGCGGGGCTGCGCCGGCGGGCCTGCCGGAGGGCACA--GACTCTGTATTCAAAAACGTACCTCTCTGAGTTATCTTT-ACAAATAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCCCTGGTTGCCTGGTGTTGGGGCGCCGCGTCCCCTC-AGCGGGC-GCGGGCCCCGAAAGTCAGTGGCGGGCTCGCCAGGACTCCGAGCGCAGTAGTTTACACCTCGCTGCGGAGGACCTGGCGGGTTACCCAGCCGTAAAACACCCCAAACTTCT-AAGGTTGACCTCGGA ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = ITS_Phaeoacremonium_aleophilum) = N: 1-516; CODONPOSSET CodonPositions (CHARACTERS = ITS_Phaeoacremonium_aleophilum) = N: 1-516; END; BEGIN TREES; TITLE Tb7101; LINK TAXA = Taxa1; TRANSLATE 1 F1_Progeny_Isolates_67_and_80, 2 Isolate_67_mata, 3 Isolate_80_matb, 4 Phaeoacremonium_aleophilum_AF017651, 5 Phaeoacremonium_aleophilum_AF266647, 6 Phaeoacremonium_angustius_CBS24995, 7 Phaeoacremonium_angustius_AF197974, 8 Phaeoacremonium_inflatipes, 9 Phaeoacremonium_mortoniae, 10 Phaeoacremonium_viticola, 11 Phialophora_richardsiae, 12 Togninia_minima; TREE Fig._2 = [&R] (11,8,(((7,10),9),(6,5,4,1,3,12,2))); END;