#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 19, 2024; 23:12 GMT TreeBASE (cc) 1994-2008 Study reference: Fausto A.S., & Vaslin M.S. 2012. New Report of Cotton Blue Disease Resistance-Breaking in Cotton Crops in Brazil. European Journal of Plant Pathology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S12692] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=17; TAXLABELS Cotton_leafroll_dwarf_virus_ARG Cotton_leafroll_dwarf_virus_CV2 Cotton_leafroll_dwarf_virus_PL3 Cotton_leafroll_dwarf_virus_PL5 Cotton_leafroll_dwarf_virus_PL6 Cotton_leafroll_dwarf_virus_PL7 Cotton_leafroll_dwarf_virus_PL8 Cotton_leafroll_dwarf_virus_PL9 Cotton_leafroll_dwarf_virus_PO1 Cotton_leafroll_dwarf_virus_PV1 Cotton_leafroll_dwarf_virus_Ron1 Cotton_leafroll_dwarf_virus_Ron10 Cotton_leafroll_dwarf_virus_Ron11 Cotton_leafroll_dwarf_virus_Ron12 Cotton_leafroll_dwarf_virus_Ron3 Cotton_leafroll_dwarf_virus_Ron4 Cotton_leafroll_dwarf_virus_Ron9 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M12603] TITLE Cotton_Blue_Disease_MP_Matrix; LINK TAXA = Taxa1; DIMENSIONS NCHAR=174; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 ] [ . . . . . . . . . . . . . . . . . ] Cotton_leafroll_dwarf_virus_ARG MEEDDHVGATGVGKISQWLWSKPLGTHNAEDDEDEEVVIGQEDAFLEDQELQARHLFSQKTVSREVPQDQSRSGRLYQIARHSAMEYSRPTMNIRSQWSYWSSSPRPLQHPPVPSLTKWIHTVNCQPYPPRLTNSESPRMGGSNLRRLSSMDRNGMTPPRTNSESYTKAMVPRR Cotton_leafroll_dwarf_virus_CV2 MEEDDHVDATGVGKISQWLWSKPLGTHNAEDDEDEEVVIGQEDAFLEDQELRARHLFSQKTISREVPQDQSRSGRLYQIARHSAMECSRPTMNIRSQWSYWSSSPRPLQHPPVPSLTKWIHTVNCLPSPPLLINSESPRTGGSNLRRLLSTDRNGMTPPRTSSESYTKAMVPRR Cotton_leafroll_dwarf_virus_PL3 MEEDDHVDATGVGKISQWLWSKPLGTHNAEDDEDEEVVIGQEDAFLEDQELRARHLFSQKTVSREVPQDQSRSGRLYQIARHSAMECSRPTMNIRSQWSYWSSSPRPLQHPPVPSLTKWIHTVNCQPYPPRLTNSESPRMGGNSLQRLSLTDRNGMTPPRTSSESYTKAMVPRR Cotton_leafroll_dwarf_virus_PL5 MEEDDHVGATGVGKISQWLWSKPLGTHNAEDDEDEEVVIGQEDAFLEDQELQARHLFSQKTVSREVPQDQSRSGRLYQIARHSAMECSRPTMNIRSQWSYWSSSPRPLQHPPVPSLTKWIHTVNCQPFPPRLTNSESPRMGGNNLRRLSSMDRNGMTPPRTSSESYTKAMVPRR Cotton_leafroll_dwarf_virus_PL6 MEEDDHVGATGVGKISQWLWSKPLGTHNAEDDEDEEVVIGQEDAFLEDQELQARHLFSQKTVSREVPQDQSRSGRLYQIARHSAMECSRPTMNIRSQWSYWSSSPRPLQHPPVPSLTKWIHTVNCQPFPPRLTNSESPRMGGNNLRRLSSMDRNGMTPPRTSSESYTKAMVPRR Cotton_leafroll_dwarf_virus_PL7 MEEDDHVGATGVGKISQWLWSKPLGTHNAEDDEDEEVVIGQEDAFLEDQELQARHLFSQKTVSREVPQDQSRSGRLYQIARHSAMECSRPTMNIRSQWSYWSSSPRPLQHPPVPSLTKWIHTVNCQPYPLRLTNSESPRMGGSNLRRLSSMDRNGMTPPRTSSESYTKAMVPRR Cotton_leafroll_dwarf_virus_PL8 MEEDDHVGATGVGKISQWLWSKPLGTHNAEDDEDEEVVIGQEDAFLEDQELQARHLFSQKTVSREVPQDQSRSGRLYQIARHSAMECSRPTMNIRSQWSYWSSSPRPLQHPPVPSLTKWIHTVNCQPYPPRLTNSESPRMGGSNLRRLSSMDRNGMTPPRTSSESYTKAMVPRR Cotton_leafroll_dwarf_virus_PL9 MEEDDHVGATGVGKISQWLWSKPLGTHNAEDDEDEEVVIGQEDAFLEDQELQARHLFSQKTVSREVPQDQSRSGRLYQIARHSAMECSRPTMNIRSQWSYWSSSPRPLQHPPVPSLTKWIHTVNCQPFPPRLTNSESPRMGGNNLRRLSSMDRNGMTPPRTSSESYTKAMVPRR Cotton_leafroll_dwarf_virus_PO1 MEEDDHVDATGVGKISQWLWSKPLGTHNAEDDEDEEVVIGQEDAFLEDQELRARHLFSQKTISREVPQDQSRSGRLYQIARHSAMECSRPTMNIRSQWSYWSSSPRPLQHPPVPSLTKWIHTVNCLPSPPLLINSESPRTGGSNLRRLSSTDRNGMTPPRTSSESYTKAMVPRR Cotton_leafroll_dwarf_virus_PV1 MEEDDHVGATGVGKISQWLWSKPLGTHNAEDDEDEEVVIGQEDAFLEDQELQARHLFSQKTVSREVPQDQSRSGRLYQIARHSAMECSRPTMNIRSQWSYWSSSPRPLQHPPVPSLTKWIHTVNCQPYPPRLTNSESPRTGGSNLRRLSSMDRNGMTPPRTSSESYIKAMVPRR Cotton_leafroll_dwarf_virus_Ron1 MEEDDHVGATGVGKISQWLWSKPLGTHNAEEDEDEEVVIGQEDAFLEDQELQARHLFSQKTVSREVPQDQSRSGRLYQIARHSAMECSRPTMNIRSQWSYWSSSPRPLQHPPVPSLTKWIHTVNCQPFPPRLTNSESPRMGGSNLRRLSSMDRNGMTPPRTSSESYTKAMVPRR Cotton_leafroll_dwarf_virus_Ron10 MEEDDHVGATGVGKISQWLWSKPLGTHNAEDDEDEEVVIGQEDAFLEDQELQARHLFSQKTVSREVPQDQSRSGRLYQIARHSAMECSRPTMNIRSQWSYWSSSPRPLQHPPVPSLTKWIHTVNCQPYPPRLINSESPRMGGSNLRRLSSTDRNGMTPPRTSSESYTKAMVPRR Cotton_leafroll_dwarf_virus_Ron11 MEEDDHVGATGVGKISQWLWSKPLGTHNAEDDEDEEVVIGQEDAFLEDQELQARHLFSQKTVSREVPQDQSRSGRLYQIARHSVMECSRPTMNIRSQWSYWSSSPRPLQHPPVPSLTKWIHTVNCQPYPPRLTNSESPRMGGSNLRRLSSTDRNGMTPPRTSSESYTKAMVPRR Cotton_leafroll_dwarf_virus_Ron12 MEEDDHVGATGVGKISQWLWSKPLGTHNAEDDEDEEVVIGQEDAFLEDQELQARHLFSQKTVSREVPQDQSRSGRLYQIARHSAMECSRPTMNIRSQWSYWSSSPRPLQHPPVPSLTKWIHTVNCQPYPPRLTNSESPRMGGSNLRRLSSMDRNGMTPPRTSSESYTKAMVPRR Cotton_leafroll_dwarf_virus_Ron3 MEEDDHVGATGVGKISQWLWSKPLGTHNAEDDEDEEVVIGQEDAFLEDQELQARHLFSQKTVSREVPQDQSRSGRLYQIARHSAMECSRPTMNIRSQWSYWSSSPRPLQHPPVPSLTKWIHTVNCQPYPPRLTNSESPRMGGSNLRRLSSTDRNGMTPPRTSSESYTKAMVPRR Cotton_leafroll_dwarf_virus_Ron4 MEEDDHVGATGVGKISQWLWSKPLGTHNAEDDEDEEVVIGQEDAFLEDQELQARHLFSQKTVSREVPQDQSRSGRLYQIARHSAMECSRPTMNIRSQWSYWSSSPRPLQHPPVPSLTKWIHTVNCQPYPPRLTNSESPRMGGSNLRRLSSTDRNGMTPPRTSSESYTKAMVPRR Cotton_leafroll_dwarf_virus_Ron9 MEEDDHVGATGVGKISQWLWSKPLGTHNAEDDEDEEVVIGQEDAFLEDQELQARHLFSQKTVSREVPQDQSRSGRLYQIARHSAMECSRPTMNIRSQWSYWSSSPRPLQHPPVPSLTKWIHTVNCQPYPPRLTNSESPRMGGSNLRRLSSMDRNGMTPPRTSSESYTKAMVPRR ; END; BEGIN TREES; TITLE NJ_Result; LINK TAXA = Taxa1; TRANSLATE 1 Cotton_leafroll_dwarf_virus_ARG, 2 Cotton_leafroll_dwarf_virus_CV2, 3 Cotton_leafroll_dwarf_virus_PL3, 4 Cotton_leafroll_dwarf_virus_PL5, 5 Cotton_leafroll_dwarf_virus_PL6, 6 Cotton_leafroll_dwarf_virus_PL7, 7 Cotton_leafroll_dwarf_virus_PL8, 8 Cotton_leafroll_dwarf_virus_PL9, 9 Cotton_leafroll_dwarf_virus_PO1, 10 Cotton_leafroll_dwarf_virus_PV1, 11 Cotton_leafroll_dwarf_virus_Ron1, 12 Cotton_leafroll_dwarf_virus_Ron10, 13 Cotton_leafroll_dwarf_virus_Ron11, 14 Cotton_leafroll_dwarf_virus_Ron12, 15 Cotton_leafroll_dwarf_virus_Ron3, 16 Cotton_leafroll_dwarf_virus_Ron4, 17 Cotton_leafroll_dwarf_virus_Ron9; TREE PAUP_1 = [&R] ((2:0.00575586,9:1.0E-8):0.014654785,(3:0.0292066,(12:9.8E-7,((13:0.00575786,(15:1.0E-8,16:1.0E-8):1.0E-8):1.0E-8,(10:0.01155874,((11:0.00577346,(8:1.0E-8,(4:1.0E-8,5:1.0E-8):1.0E-8):0.0057557):0.00579248,(1:0.01154425,(7:1.0E-8,(6:0.00576908,(14:1.0E-8,17:1.0E-8):1.0E-8):1.0E-8):1.0E-8):1.0E-8):1.0E-8):0.00575997):0.00575612):0.01154085):0.014654785); END;