#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 10, 2024; 22:55 GMT TreeBASE (cc) 1994-2008 Study reference: Lynch S.C., Eskalen A., Zambino P., Mayorquin J.S., & Wang D.H. 2012. Identification and pathogenicity of fungal species associated with declining Quercus agrifolia. Plant Disease, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S12972] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=33; TAXLABELS Diatrypella_favacea_DL26C Diatrypella_frostii_DL27A Diatrypella_prominens_DL28A Diatrypella_pulvinata_H048 Diatrypella_quercina_DL30M Diatrypella_sp._D.Ch.500 Diatrypella_sp._HVFR02B Diatrypella_sp._HVFR04 Diatrypella_sp._HVGF03 Diatrypella_sp._UCD2240MO Diatrypella_sp._UCD2458TX Diatrypella_sp._UCD2466TX Diatrypella_sp._UCD2563AR Diatrypella_sp._UCDDHb500 Diatrypella_verrucaeformis_CA008 Diatrypella_verrucaeformis_CA149 Diatrypella_verrucaeformis_CA7614 Diatrypella_verrucaeformis_DCH500 Diatrypella_verrucaeformis_DCH600 Diatrypella_verrucaeformis_DCH700 Diatrypella_verrucaeformis_UCD1268So Diatrypella_verrucaeformis_UCDCH2 Diatrypella_verrucaeformis_UCROK1208 Diatrypella_verrucaeformis_UCROK1307 Diatrypella_verrucaeformis_UCROK292 Diatrypella_verrucaeformis_UCROK480 Diatrypella_verrucaeformis_UCROK547 Diatrypella_verrucaeformis_UCROK570 Diatrypella_verrucaeformis_UCROK584 Diatrypella_verrucaeformis_UCROK754 Diatrypella_verrucaeformis_UCROK756 Diatrypella_vulgaris_CBS128327 Guignardia_philoprina_CBS447.68 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M17510] TITLE Diatrypella_ITS; LINK TAXA = Taxa1; DIMENSIONS NCHAR=598; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Diatrypella_favacea_DL26C GGGATCATTACAGAGTTATCTAACTCCCAAAA-----CCATGTGAA--CTTACCTATGTT-GCCTCGGCGGGGAAGCCTAC---CCGGTACCTACCCTGTAGT-T--------------------------ACCCGGGAGCGAGCTACCCTGTAGCCCGCTG------------CTGGCCTACCCGCCGGTGGACTGTTAAACTCTTG---TTTTTTAGTG-ATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCTAGTTGCTTGGTGTTGGGAGCCTATCTCC----------GGATAGCTCCTCAAAACCATTGGCGGAGTCGCGATGGCCCCAAGCGTAGTAATTTTTATTC--GCTTCAGGTG-TGTCAGCGCTGGCGTTCAGCCGTTAAA-CCCC-----CTATTTTCTAGTGGTTGACCTCGG Diatrypella_frostii_DL27A GGGATCATTACAGAGTTATCTAACTCCCAAC------CCATGTGAA--CTTACCTTTGTT-GCCTCGGCGGGAGAGCCTAC---CCGGTACCTACCCTGTAGT-T--------------------------ACCCGGGAGCGAGCTGCCCTGCAGCCCGCTG------------CTGGCCGACCCGCCGGTGGACAGTAAAACTCTTG---TTTTT-AGTGGATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGTTGCTTGGTGTTGGGAGCCTGCCCCCCT----AGGGGAGCAGCTCCTCAAAGCTATTGGCGGAGTCGTATTGGCCCTAAGCGTAGTAATTTTTCCTC--GCTTTTAGTGGTTCCAGTGCTGGCGTCCAGCCGTAAAA-CCCC-----TAATTTTCTAGTGGTTGACCTCGG Diatrypella_prominens_DL28A GGGATCATTACAGAGTTATCCAACTCCCAAC------CCATGTGAA--CTTACCTTTGTT-GCCTCGGCGGGAGAGCCTAC---CCGGTACCTACCCTGTAGT-TGCCTACCCGGTACCTACCCTGTAGTTACCCGGGAGCGAGCTGCCCTGCAGCCCGCTG------------CTGGCCGACCCGCCGGTGGACAGTAAAACTCTTG---TTTTTTAGTGGATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCCGTTGCTTGGTGTTGGGAGCCTGCCCCCCCTA--GGGGGGGCAGCTCCTCAAAGCTATTGGCGGAGCCGTGCTGGCCCTAAGCGTAGTAATTTGTTCTC--GCTTCTAGTGGTTCCAGCGCTGGCGTTCAGCCGTAAAA-CCCC-----TAATTTTCTAGTGGTTGACCTCGG Diatrypella_pulvinata_H048 GGGATCATTACAGAGTTATCTAACTCCCAAAA-----CCATGTGAA--CTTACCTATGTT-GCCTCGGCGGGGAAGCCTAC---CCGGTACCTACCCTGTAGT-T--------------------------ACCCGGGAGCGAGCTACCCTGTAGCCCGCTG------------CTGGCCGACCCGCCGGTGGACTGCTAAACTCTTG---TTTTTTCGTG-ATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCTAGTTGCTTGGTGTTGGGAGCCTATCTCC----------GGATAGCTCCTCAAAACCATTGGCGGAGTCGCGATGGCCCCAAGCGTAGTAATTTTTATTC--GCTTCAGGTG-TGTCAGCGCTGGCGTCCAGCCGCTAAA-CCCC-----CTATTTTTTAGTGGTTGACCTCGG Diatrypella_quercina_DL30M GGGATCATTACAGAGTTCCCTAACTCCAAAC------CCATGTGAA--CTTACCTATGTT-GCCTCGGCGGGAAAACCTAC---CCGGTAATTACCCTGTAGT-T--------------------------ACCCGGGAGCGAGCTACCTGGTAGCCCGCTG------------CAGGCCTACCCGCCGGTGGACAGTTAAACTCTTG---TTTTACCGTGAAACTTCTGATATTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCGACCATCAAGCCCCAGCTGCTTGGTTTTGGGAGCCTATCTCC--------AGGGATAGCTCCTTAAATAGAGTGGCGGAGTCGTGCTGACCC-AAGCGTAGTAATTTTTCTC---GCTTCTGGTG---CCGGTGCTGACGTCCTGCCGTTAAA-CCCC-----CTATTTTTTAAAGGTTGACCTCGG Diatrypella_sp._D.Ch.500 GGGATCATTACAGAGTTAATAAACTCCCAAC------CCATGTGAA--CTTACCTATGTT-GCCTCGGCGGGAGAGCCTAC---CCGGTACCTACCCTGTAGT-T--------------------------ACCCGGGAGCGAGCTACCCTGTAGCCCGCTG------------CTGGCCGACCCGCCGGTGGACAGTAAAACTCTTG---TTTTT-AGTGGATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGTTGCTTGGTGTTGGGAGCCTGCACCCCCCC-GGGGGCTGCAGCTCCTCAAAGCTATTGGCGGAGTCGTATTGGCCCTAAGCGTAGTAATTTTTTCCT-CGCTTCTAGTGGTTCCAGTGCTGGCGTCCAGCCGTAAAA-CCCC-----TAATTTTCTAGTGGTTGACCTCGG Diatrypella_sp._HVFR02B GGGATCATTACAGAGTTATCTAACTCCCAAC------CCATGTGAA--CTTACCTTTGTT-GCCTCGGCGGGAGAGCCTAC---CCGGTACCTACCCTGTAGT-T--------------------------ACCCGGGAGCGAGCTGCCCTGCAGCCCGCTG------------CTGGCCGACCCGCCGGTGGACAGTAAAACTCTTG---TTTTT-AGTG-ATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGTTGCTTGGTGTTGGGAGCCTGCCCCTCT----AGGGGGGCAGCTCCTTAAAGCTATTGGCGGAGTCGTATTGGCCCTAAGCGTAGTAATTTTTTCTC--GCTTCTAGTGGTTCCAGTGCTGGCGTCCAGCCGTAAAA-CCCT-----TAATTTTCTAGTGGTTGACCTCGG Diatrypella_sp._HVFR04 GGGATCATTACAGAGTTATCTAACTCCCAAC------CCATGTGAA--CTTACCTTTGTT-GCCTCGGCGGGAGAGCCTAC---CCGGTACCTACCCTGTAGT-T--------------------------ACCCGGGAGCGAGCTGCCCTGCAGCCCGCTG------------CTGGCCGACCCGCCGGTGGACAGTAAAACTCTTG---TTTTT-AGTG-ATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGTTGCTTGGTGTTGGGAGCCTGCCCCTCT----AGGGGGGCAGCTCCTTAAAGCTATTGGCGGAGTCGTATTGGCCCTAAGCGTAGTAATTTTTTCTC--GCTTCTAGTGGTTCCAGTGCTGGCGTCCAGCCGTAAAA-CCCT-----TAATTTTCTAGTGGTTGACCTCGG Diatrypella_sp._HVGF03 GGGATCATTACAGAGTTATCTAACTCCCAAC------CCATGTGAA--CTTACCTTTGTT-GCCTCGGCGGGAGAGCCTAC---CCGGTACCTACCCTGTAGT-T--------------------------ACCCGGGAGCGAGCTGCCCTGCAGCCCGCTG------------CTGGCCGACCCGCCGGTGGACAGTAAAACTCTTG---TTTTT-AGTG-ATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGTTGCTTGGTGTTGGGAGCCTGCCCCTCT----AGGGGGGCAGCTCCTTAAAGCTATTGGCGGAGTCGTATTGGCCCTAAGCGTAGTAATTTTTTCTC--GCTTCTAGTGGTTCCAGTGCTGGCGTCCAGCCGTAAAA-CCCT-----TAATTTTCTAGTGGTTGACCTCGG Diatrypella_sp._UCD2240MO GGGATCATTACAGAGTTAATAAACTCCCAAC------CCATGTGAA--CTTACCTATGTTTGCCTCGGCGGGAGAGCCTAC---CCGGTACCTACCCTGTAGT-T--------------------------CCCCGGGAGCGAGCTACCCTGTAGCCCGCTG------------CTGGCCGACCCGCCGGTGGACAGTAAAACTCTTG---TTTTTTAGTGGATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGTTGCTTGGTGTTGGGAGCCTGCAACCCCCCTAGGGGCTGCAGCTCCTCAAAGCTATTGGCGGAGTCGTATTGGCCCTAAGCGTAGTAATTTTTTCCT-CGCTTCTAGTGGTTCCAGTGCTGGCGTCCAGCCGTAAAA-CCCC-----TAATTTTCTAGTGGTTGACCTCGG Diatrypella_sp._UCD2458TX GGGATCATTACAGAGTTAATAAACTCCCAAC------CCATGTGAA--CTTACCTATGTT-GCCTCGGCGGGAGAGCCTAC---CCGGTACCTACCCTGTAGT-T--------------------------ACCCGGGAGCGAGCTACCCTGTAGCCCGCTG------------CTGGCCGACCCGCCGGTGGACAGTAAAACTCTTG---TTTTTTAGTGGATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGTTGCTTGGTGTTGGGAGCCTGCAACCCCCC-AGGGGCTGCAGCTCCTCAAAGCTATTGGCGGAGTCGTATTGGCCCTAAGCGTAGTAATTTTTTCCT-CGCTTCTAGTGGTTCCAGTGCTGGCGTCCAGCCGTAAAA-CCCC-----TAATTTTCTAGTGGTTGACCTCGG Diatrypella_sp._UCD2466TX GGGATCATTACAGAGTTAATAAACTCCCAAC------CCATGTGAA--CTTACCTATGTT-GCCTCGGCGGGAGAGCCTAC---CCGGTACCTACCCTGTAGT-T--------------------------ACCCGGGAGCGAGCTACCCTGTAGCCCGCTG------------CTGGCCGACCCGCCGGTGGACAGTAAAACTCTTG---TTTTTTAGTGGATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGTTGCTTGGTGTTGGGAGCCTGCAACCCCCC-AGGGGCTGCAGCTCCTCAAAGCTATTGGCGGAGTCGTATTGGCCCTAAGCGTAGTAATTTTTTCCT-CGCTTCTAGTGGTTCCAGTGCTGGCGTCCAGCCGTAAAA-CCCC-----TAATTTTCTAGTGGTTGACCTCGG Diatrypella_sp._UCD2563AR GGGATCATTACAGAGTTAATAAACTCCCAAC------CCATGTGAA--CTTACCTATGTTTGCCTCGGCGGGAGAGCCTAC---CCGGTACCTACCCTGTAGT-T--------------------------CCCCGGGAGCGAGCTACCCTGTAGCCCGCTG------------CTGGCCGACCCGCCGGTGGACAGTAAAACTCTTG---TTTTTTAGTGGATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGTTGCTTGGTGTTGGGAGCCTGCAACCCCCCTAGGGGCTGCAGCTCCTCAAAGCTATTGGCGGAGTCGTATTGGCCCTAAGCGTAGTAATTTTTTCCT-CGCTTCTAGTGGTTCCAGTGCTGGCGTCCAGCCGTAAAA-CCCC-----TAATTTTCTAGTGGTTGACCTCGG Diatrypella_sp._UCDDHb500 GGGATCATTACAGAGTTAATAAACTCCCAAC------CCATGTGAA--CTTACCTATGTT-GCCTCGGCGGGAGAGCCTAC---CCGGTACCTACCCTGTAGT-T--------------------------ACCCGGGAGCGAGCTACCCTGTAGCCCGCTG------------CTGGCCGACCCGCCGGTGGACAGTAAAACTCTTG---TTTTT-AGTGGATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGTTGCTTGGTGTTGGGAGCCTGCACCCCCCC-GGGGGCTGCAGCTCCTCAAAGCTATTGGCGGAGTCGTATTGGCCCTAAGCGTAGTAATTTTTTCCT-CGCTTCTAGTGGTTCCAGTGCTGGCGTCCAGCCGTAAAA-CCCC-----TAATTTTCTAGTGGTTGACCTCGG Diatrypella_verrucaeformis_CA008 GGGATCATTACAGAGTTAATAAACTCCCAAC------CCATGTGAA--CTTACCTATGTT-GCCTCGGCGGGAGAGCCTAC---CCGGTACCTACCCTGTAGT-T--------------------------ACCCGGGAGCGAGCTACCCTGTAGCCCGCTG------------CTGGCCGACCCGCCGGTGGACAGTAAAACTCTTG---TTTTT-AGTGGATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGTTGCTTGGTGTTGGGAGCCTGCACCCCCCC-GGGGGCTGCAGCTCCTCAAAGCTATTGGCGGAGTCGTATTGGCCCTAAGCGTAGTAATTTTTTCCT-CGCTTCTAGTGGTTCCAGTGCTGGCGTCCAGCCGTAAAA-CCCC-----TAATCTTTTAGTGGTTGACCTCGG Diatrypella_verrucaeformis_CA149 GGGATCATTACAGAGTTAATAAACTCCCAAC------CCATGTGAA--CTTACCTATGTT-GCCTCGGCGGGAGAGCCTAC---CCGGTACCTACCCTGTAGT-T--------------------------ACCCGGGAGCGAGCTACCCTGTAGCCCGCTG------------CTGGCCGACCCGCCGGTGGACAGTAAAACTCTTG---TTTTT-AGTGGATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGTTGCTTGGTGTTGGGAGCCTGCACCCCCCC-GGGGGCTGCAGCTCCTCAAAGCTATTGGCGGAGTCGTATTGGCCCTAAGCGTAGTAATTTTTTCCT-CGCTTCTAGTGGTTCCAGTGCTGGCGTCCAGCCGTAAAA-CCCC-----TAATTTTCTAGTGGTTGACCTCGG Diatrypella_verrucaeformis_CA7614 GGGATCATTACAGAGTTAATAAACTCCCAAC------CCATGTGAA--CTTACCTATGTT-GCCTCGGCGGGAGAGCCTAC---CCGGTACCTACCCTGTAGT-T--------------------------ACCCGGGAGCGAGCTACCCTGTAGCCCGCTG------------CTGGCCGACCCGCCGGTGGACAGTAAAACTCTTG---TTTTT-AGTGGATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGTTGCTTGGTGTTGGGAGCCTGCAACCCCCA-AGGGGCTGCAGCTCCTCAAAGCTATTGGCGGAGTCGTATTGGCCCTAAGCGTAGTAATTTTTTCCT-CGCTTCTAGTGGTTCCAGTGCTGGCGTCCAGCCGTAAAA-CCCC-----TAATTTTCTAGTGGTTGACCTCGG Diatrypella_verrucaeformis_DCH500 GGGATCATTACAGAGTTAATAAACTCCCAAC------CCATGTGAA--CTTACCTATGTT-GCCTCGGCGGGAGAGCCTAC---CCGGTACCTACCCTGTAGT-T--------------------------ACCCGGGAGCGAGCTACCCTGTAGCCCGCTG------------CTGGCCGACCCGCCGGTGGACAGTAAAACTCTTG---TTTTT-AGTGGATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGTTGCTTGGTGTTGGGAGCCTGCACCCCCCC-GGGGGCTGCAGCTCCTCAAAGCTATTGGCGGAGTCGTATTGGCCCTAAGCGTAGTAATTTTTTCCT-CGCTTCTAGTGGTTCCAGTGCTGGCGTCCAGCCGTAAAA-CCCC-----TAATTTTCTAGTGGTTGACCTCGG Diatrypella_verrucaeformis_DCH600 GGGATCATTACAGAGTTAATAAACTCCCAAC------CCATGTGAA--CTTACCTATGTT-GCCTCGGCGGGAGAGCCTAC---CCGGTACCTACCCTGTAGT-T--------------------------ACCCGGGAGCGAGCTACCCTGTAGCCCGCTG------------CTGGCCGACCCGCCGGTGGACAGTAAAACTCTTG---TTTTT-AGTGGATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGTTGCTTGGTGTTGGGAGCCTGCACCCCCCC-GGGGGCTGCAGCTCCTCAAAGCTATTGGCGGAGTCGTATTGGCCCTAAGCGTAGTAATTTTTTCCT-CGCTTCTAGTGGTTCCAGTGCTGGCGTCCAGCCGTAAAA-CCCC-----TAATTTTCTAGTGGTTGACCTCGG Diatrypella_verrucaeformis_DCH700 GGGATCATTACAGAGTTAATAAACTCCCAAC------CCATGTGAA--CTTACCTATGTT-GCCTCGGCGGGAGAGCCTAC---CCGGTACCTACCCTGTAGT-T--------------------------ACCCGGGAGCGAGCTACCCTGTAGCCCGCTG------------CTGGCCGACCCGCCGGTGGACAGTAAAACTCTTG---TTTTT-AGTGGATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGTTGCTTGGTGTTGGGAGCCTGCACCCCCCC-GGGGGCTGCAGCTCCTCAAAGCTATTGGCGGAGTCGTATTGGCCCTAAGCGTAGTAATTTTTTCCT-CGCTTCTAGTGGTTCCAGTGCTGGCGTCCAGCCGTAAAA-CCCC-----TAATCTTCTAGTGGTTGACCTCGG Diatrypella_verrucaeformis_UCD1268So GGGATCATTACAGAGTTAATAAACTCCCAAC------CCATGTGAA--CTTACCTATGTT-GCCTCGGCGGGAGAGCCTAC---CCGGTACCTACCCTGTAGT-T--------------------------ACCCGGGAGCGAGCTACCCTGTAGCCCGCTG------------CTGGCCGACCCGCCGGTGGACAGTAAAACTCTTG---TTTTT-AGTGGATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGTTGCTTGGTGTTGGGAGCCTGCACCCCCCC-GGGGGCTGCAGCTCCTCAAAGCTATTGGCGGAGTCGTATTGGCCCTAAGCGTAGTAATTTTTTCCT-CGCTTCTAGTGGTTCCAGTGCTGGCGTCCAGCCGTAAAA-CCCC-----TAATCTTTTAGTGGTTGACCTCGG Diatrypella_verrucaeformis_UCDCH2 GGGATCATTACAGAGTTAATAAACTCCCAAC------CCATGTGAA--CTTACCTATGTT-GCCTCGGCGGGAGAGCCTAC---CCGGTACCTACCCTGTAGT-T--------------------------ACCCGGGAGCGAGCTACCCTGTAGCCCGCTG------------CTGGCCGACCCGCCGGTGGACAGTAAAACTCTTG---TTTTT-AGTGGATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGTTGCTTGGTGTTGGGAGCCTGCACCCCCCCCGGGGGCTGCAGCTCCTCAAAGCTATTGGCGGAGTCGTATTGGCCCTAAGCGTAGTAATTTTTTCCT-CGCTTCTAGTGGTTCCAGTGCTGGCGTCCAGCCGTAAAA-CCCT-----TAATTTTCTAGTGGTTGACCTCGG Diatrypella_verrucaeformis_UCROK1208 GGGATCATTACAGAGTTAATAAACTCCCAAC------CCATGTGAA--CTTACCTATGTT-GCCTCGGCGGGAGAGCCTAC---CCGGTACCTACCCTGTAGT-T--------------------------ACCCGGGAGCGAGCTACCCTGTAGCCCGCTG------------CTGGCCGACCCGCCGGTGGACAGTAAAACTCTTG---TTTTT-AGTGGATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGTTGCTTGGTGTTGGGAGCCTGCACCCCCCC-GGGGGCTGCAGCTCCTCAAAGCTATTGGCGGAGTCGTATTGGCCCTAAGCGTAGTAATCTTTTCCT-CGCTTCTAGTGGTTCCAGTGCTGGCGTCCAGCCGTAAAA-CCCC-----TAATTTTCTAGTGGTTGACCTCGG Diatrypella_verrucaeformis_UCROK1307 GGGATCATTACAGAGTTAATAAACTCCCAAC------CCATGTGAA--CTTACCTATGTT-GCCTCGGCGGGAGAGCCTAC---CCGGTACCTACCCTGTAGT-T--------------------------ACCCGGGAGCGAGCTACCCTGTAGCCCGCTG------------CTGGCCGACCCGCCGGTGGACAGTAAAACTCTTG---TTTTT-AGTGGATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGTTGCTTGGTGTTGGGAGCCTGCAACCCCCC-GGGGGCTGCAGCTCCTCAAAGCTATTGGCGGAGTCGTATTGGCCCTAAGCGTAGTAATTTTTTCCT-CGCTTCTAGTGGTTCCAGTGCTGGCGTCCAGCCGTAAAA-CCCC-----TAATTTTCTAGTGGTTGACCTCGG Diatrypella_verrucaeformis_UCROK292 GGGATCATTACAGAGTTAATAAACTCCCAAC------CCATGTGAA--CTTACCTATGTT-GCCTCGGCGGGAGAGCCTAC---CCGGTACCTACCCTGTAGT-T--------------------------ACCCGGGAGCGAGCTACCCTGTAGCCCGCTG------------CTGGCCGACCCGCCGGTGGACAGTAAAACTCTTG---TTTTT-AGTGGATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGTTGCTTGGTGTTGGGAGCCTGCACCCCCCC-GGGGGCTGCAGCTCCTCAAAGCTATTGGCGGAGTCGTATTGGCCCTAAGCGTAGTAATTTTTTCCT-CGCTTCTAGTGGTTCCAGTGCTGGCGTCCAGCCGTAAAA-CCCC-----TAATTTTCTAGTGGTTGACCTCGG Diatrypella_verrucaeformis_UCROK480 GGGATCATTACAGAGTTAATAAACTCCCAAC------CCATGTGAA--CTTACCTATGTT-GCCTCGGCGGGAGAGCCTAC---CCGGTACCTACCCTGTAGT-T--------------------------ACCCGGGAGCGAGCTACCCTGTAGCCCGCTG------------CTGGCCGACCCGCCGGTGGACAGTAAAACTCTTG---TTTTT-AGTGGATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGTTGCTTGGTGTTGGGAGCCTGCAACCCCCA-AGGGGCTGCAGCTCCTCAAAGCTATTGGCGGAGTCGTATTGGCCCTAAGCGTAGTAATTTTTTCCT-CGCTTCTAGTGGTTCCAGTGCTGGCGTCCAGCCGTAAAA-CCCC-----TAATTTTCTAGTGGTTGACCTCGG Diatrypella_verrucaeformis_UCROK547 GGGATCATTACAGAGTTAATAAACTCCCAAC------CCATGTGAA--CTTACCTATGTT-GCCTCGGCGGGAGAGCCTAC---CCGGTACCTACCCTGTAGT-T--------------------------ACCCGGGAGCGAGCTACCCTGTAGCCCGCTG------------CTGGCCGACCCGCCGGTGGACAGTAAAACTCTTG---TTTTT-AGTGGATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCTAGTTGCTTGGTGTTGGGAGCCTGCAACCCCCA-AGGGGCTGCAGCTCCTCAAAGCTATTGGCGGAGTCGTATTGGCCCTAAGCGTAGTAATTTTTTTCT-CGCTTCTAGTGGTTCCAGTGCTGGCGTCCAGCCGTAAAA-CCCC-----TAATTTTTTAGTGGTTGACCTCGG Diatrypella_verrucaeformis_UCROK570 GGGATCATTACAGAGTTAATAAACTCCCAAC------CCATGTGAA--CTTACCTATGTT-GCCTCGGCGGGAGAGCCTAC---CCGGTACCTACCCTGTAGT-T--------------------------ACCCGGGAGCGAGCTACCCTGTAGCCCGCTG------------CTGGCCGACCCGCCGGTGGACAGTAAAACTCTTG---TTTTT-AGTGGATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGTTGCTTGGTGTTGGGAGCCTGCACCCCCCC-GGGGGCTGCAGCTCTTTAAAGCTATTGGCGGAGTCGTATTGGCCCTAAGCGTAGTAATTTTTTCCT-CGCTTCTAGTGGTTCCAGTGCTGGCGTCCAGCCGTAAAA-CCCC-----TAATCTTCTAGTGGTTGACCTCGG Diatrypella_verrucaeformis_UCROK584 GGGATCATTACAGAGTTAATAAACTCCCAAC------CCATGTGAA--CTTACCTATGTT-GCCTCGGCGGGAGAGCCTAC---CCGGTACCTACCCTGTAGT-T--------------------------ACCCGGGAGCGAGCTACCCTGTAGCCCGCTG------------CTGGCCGACCCGCCGGTGGACAGTAAAACTCTTG---TTTTT-AGTGGATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGTTGCTTGGTGTTGGGAGCCTGCACCCCCCC-GGGGGCTGCAGCTCCTCAAAGCTATTGGCGGAGTCGTATTGGCCCTAAGCGTAGTAATTTTTTCCT-CGCTTCTAGTGGTTCCAGTGCTGGCGTCCAGCCGTAAAA-CCCC-----TAATTTTCTAGTGGTTGACCTCGG Diatrypella_verrucaeformis_UCROK754 GGGATCATTACAGAGTTAATAAACTCCCAAC------CCATGTGAA--CTTACCTATGTT-GCCTCGGCGGGAGAGCCTAC---CCGGTACCTACCCTGTAGT-T--------------------------ACCCGGGAGCGAGCTACCCTGTAGCCCGCTG------------CTGGCCGACCCGCCGGTGGACAGTAAAACTCTTG---TTTTT-AGTGGATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGTTGCTTGGTGTTGGGAGCCTGCACCCCCCC-GGGGGCTGCAGCTCCTCAAAGCTATTGGCGGAGTCGTATTGGCCCTAAGCGTAGTAATTTTTTCCT-CGCTTCTAGTGGTTCCAGTGCTGGCGTCCAGCCGTAAAA-CCCC-----TAATTTTCTAGTGGTTGACCTCGG Diatrypella_verrucaeformis_UCROK756 GGGATCATTACAGAGTTAATAAACTCCCAAC------CCATGTGAA--CTTACCTATGTT-GCCTCGGCGGGAGAGCCTAC---CCGGTACCTACCCTGTAGT-T--------------------------ACCCGGGAGCGAGCTACCCTGTAGCCCGCTG------------CTGGCCGACCCGCCGGTGGACAGTAAAACTCTTG---TTTTT-AGTGGATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGTTGCTTGGTGTTGGGAGCCTGCACCCCCCCCGGGGGCTGCAGCTCCTCAAAGCTATTGGCGGAGTCGTATTGGCCCTAAGCGTAGTAATTTTTTCCTTCGCTTCTAGTGGTTCCAGTGCTGGCGTCCAGCCGTAAAAACCCC-----TAATTTTCTAGTGGTTGACCTCGG Diatrypella_vulgaris_CBS128327 GGGATCATTACAGAGTTATCTAACTCCCAAC------CCATGTGAA--CTTACCTTTGTT-GCCTCGGCGGGAGAGCCTAC---CCGGTACCTACCCTGTAGT-T--------------------------ACCCGGGAGCGAGCTGCCCTGCAGCCCGCTG------------CTGGCCGACCCGCCGGTGGACAGTAAAACTCTTG---TTTTT-AGTG-ATTATCTGAGTGTTTATACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGTTGCTTGGTGTTGGGAGCCTGCCCCTCT----AGGGGGGCAGCTCCTTAAAGCTATTGGCGGAGTCGTATTGGCCCTAAGCGTAGTAATTTTTTCTC--GCTTCTAGTGGTTCCAGTGCTGGCGTCCAGCCGTAAAA-CCCT-----TAATTTTCTAGTGGTTGACCTCGG Guignardia_philoprina_CBS447.68 AGGATCATTACTGAACTAGTAATTCTCTGAAAGGTCGCCGTAGGGGGCCCCCCCTAAACAAGGGGCCCCCGAAGGTCCTTCACACCCTTGTGTACCTTACCACGTTGCTTTGGCGGGCCGACCCGGTTTCGACCCGGGCGGCCGGCGCCCC-CAGCCCTCCAGGGCCAGGACGTCAGGCCAAGCGCCCGCCAGTAAACAAAACTCCAGCGATTATTTCATGCGGT-CCTGATAAATTAT--TCAATTAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGATTTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTC----TGCTTGGTATTGGGCGACGTCCGCT--------GCCGGACGCGCCTCGAAGACCTCGGCGACGGCGTCCCAGCCTCGAGCGTAGTAGTAAAATATCTCGCT-CTGGAGTGCTGGGCGTTGGCCGCCGGACAACCGACCTTCGGTCACTATTTTTCCAAGGTTGACCTCGG ; END; BEGIN TREES; TITLE Diatrypella_ITS; LINK TAXA = Taxa1; TRANSLATE 1 Diatrypella_favacea_DL26C, 2 Diatrypella_frostii_DL27A, 3 Diatrypella_prominens_DL28A, 4 Diatrypella_pulvinata_H048, 5 Diatrypella_quercina_DL30M, 6 Diatrypella_sp._D.Ch.500, 7 Diatrypella_sp._HVFR02B, 8 Diatrypella_sp._HVFR04, 9 Diatrypella_sp._HVGF03, 10 Diatrypella_sp._UCD2240MO, 11 Diatrypella_sp._UCD2458TX, 12 Diatrypella_sp._UCD2466TX, 13 Diatrypella_sp._UCD2563AR, 14 Diatrypella_sp._UCDDHb500, 15 Diatrypella_verrucaeformis_CA008, 16 Diatrypella_verrucaeformis_CA149, 17 Diatrypella_verrucaeformis_CA7614, 18 Diatrypella_verrucaeformis_DCH500, 19 Diatrypella_verrucaeformis_DCH600, 20 Diatrypella_verrucaeformis_DCH700, 21 Diatrypella_verrucaeformis_UCD1268So, 22 Diatrypella_verrucaeformis_UCDCH2, 23 Diatrypella_verrucaeformis_UCROK1208, 24 Diatrypella_verrucaeformis_UCROK1307, 25 Diatrypella_verrucaeformis_UCROK292, 26 Diatrypella_verrucaeformis_UCROK480, 27 Diatrypella_verrucaeformis_UCROK547, 28 Diatrypella_verrucaeformis_UCROK570, 29 Diatrypella_verrucaeformis_UCROK584, 30 Diatrypella_verrucaeformis_UCROK754, 31 Diatrypella_verrucaeformis_UCROK756, 32 Diatrypella_vulgaris_CBS128327, 33 Guignardia_philoprina_CBS447.68; TREE Fig._4 = [&R] ((((((((((((((12,27)0.0333,24)0.0197,26)0.0196,11)0.0316,17)0.1014,(13,10)0.6415)0.5365,(22,(14,(18,(25,(31,(6,29)0.0163)0.0033)0.0017)0.0007)0.0007)0.0013)0.0000,23)0.0001,((15,21)0.5613,(20,28)0.3308)0.5511)0.0006,19)0.0019,(16,30)0.0132)0.9677,(3,(2,(32,(9,(7,8)0.1700)0.2372)0.9587)0.3484)0.4509)0.9509,(1,4)0.9573)0.6981,5,33); END;