#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 26, 2024; 21:08 GMT TreeBASE (cc) 1994-2008 Study reference: Lee M.S., & Worthy T. 2012. Likelihood reinstates Archaeopteryx as a primitive bird. Biology Letters, 8(2): 299-303. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S13000] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=27; TAXLABELS Amargasaurus Amazonsaurus Amphicoelias Apatosaurus Australodocus Barosaurus Brachiosaurus Brachytrachelopan Camarasaurus Cathartesaura Demandasaurus Dicraeosaurus Dinheirosaurus Diplodocus Haplocanthosaurus Histriasaurus Jobaria Limaysaurus Losillasaurus Nigersaurus Omeisaurus Rebbachisaurus Shunosaurus Supersaurus Suuwassea Tornieria Zapalasaurus ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M13651] TITLE Archaeopteryx; LINK TAXA = Taxa1; DIMENSIONS NCHAR=198; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3 4 5" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 ] [ . . . . . . . . . . . . . . . . . . . . ] Amargasaurus ????????????1?0010000?00??????????111100110111110100???????????????????0010101101111101110000?00100001031001101000?0?111?0110?00?1?11??010000??01?010?0110?????11?000010?1110???0????????1010?0111???? Amazonsaurus ???????????????????????????????????????????????????????????????????????0????????????????????????????????0?0??00?0???????00????00?0?1111??????1?0100??0000100?????11?????????????10???????????????????? Amphicoelias ????????????????????????????????????????????????????????????????1???????????????????????????????????????0?001??001000100001000?????1?????????????????????????????????????????????????????10100???????? Apatosaurus 0021111111111011000011101?111001010110100000011000000110011111011110001031011010110110000001001010001003010010000100111010100000101011100{01}{01}000?1101110010000111111000000?00100{01}10100100011010011111111 Australodocus ???????????????????????????????????????????????????????????????????????1?1001110????01?00??00????????????????????????????????????????????????????????????????????????????????????????????????????????? Barosaurus ???????????????????????????????????????????????????????????????????????041001011?101?100011101001111101401001?10010011101010000010101111011110?111111111001011?111000010??01?00?01?01000110??01????11? Brachiosaurus 10100000010001000000?110010000100?000000000000000001000000000001010000112100111000010100011000000000??020100100011000100?000100000000110010000?0000000000000??0001101010000011111010010000000001100000 Brachytrachelopan ???????????????????????????????????????????????????????????????????????0?10101?0?11??011100????01??1110?10011?1100?011111?110??????????????????????????????????11???????????????0????????????????????? Camarasaurus 10100000010001000000111001000010000010000000000000001010000000000100001011001010000100000000000010000001000000?0110000001000100000000110000000?0000000000001000001101010000011{01}10010010000000001100000 Cathartesaura ???????????????????????????????????????????????????????????????????????0?1010010?????0??0??01?010001??????????????????????????00?11?????000??1?11001000?010????????12?11?????????????????1110????????? Demandasaurus ?????????????????????????????????????????????????????????????11??????????1110????00??1?????1?????0??????0????????1??????????0?11??1?1110?00??01?100?001?10???????1?????????????????101110110?1???????? Dicraeosaurus 0121111??1??1?0010000??0??????????1111001101111101001?111?110101111??010110101101111101110000000100111011001101100?011111011000011111110100000?010010001100011?111000010?0111???01001000110100011101?? Dinheirosaurus ???????????????????????????????????????????????????????????????????????0?1011010?????????10?00100010????0001?100011111101?1000?????0????011????????????????????1?????????????????????????????????????? Diplodocus 0021111111111011000011101111100101011010000001100001011001111101111100103100101011010100011101001111101301001110010011101010000010101111011110?1111111110010111111000010?001100?0100100011011011111111 Haplocanthosaurus ???????????????????????????????????????????????????????????????????????031000010?0011000010000000001??0001011101110000000000000000000110010000?0000000000?01???111100000????????0000010?010000???1???? Histriasaurus ???????????????????????????????????????????????????????????????????????0????????????????????????????????0?11???0?1000????1???0???????????????????????????????????????????????????????????????????????? Jobaria 10000000000001000??110100?000000000000000000?00?00?0?0000000000000000000210100100001?0000??00?000100??010?00??00100?01?00?1000000??00110?0000??0000000000?0?00?000000?00?0011000000?01000??10??111?0?? Limaysaurus ????????????1?0001110101??1111111000?001001001101110?1??????011?1???1110?1010010?00000000??010010000??0?0?11?001010000100110010001111110000001?110010001010011?1?1112111?111100??0010110011100?1?100?? Losillasaurus ??????????????????????????????????????0?????0?000001???????????????????0?1000000?0?????00??000??????????0?010?00110001001000100010000101000?0010000000000000?????????????1?0????00?0??00?????????????? Nigersaurus 00211101?11010000111?1011?1111111000??11?010011?1110?1020011011110101110?1110010?000010001011?000000??0?0?111001?10001?0?1100111??111??0000??1?0100??001010011?10??12110?0111???0?0101110111011111???? Omeisaurus 1000000000000000000100100000000000000000000??000???0?0000000000001?0000051010000?001?100011000000000???100000?000100?0000000000000000000?00000?0000000?00000??0000000?10?10000{01}00000000001000?00000100 Rebbachisaurus ????????????????????????????????????????????????????????????????1????0?0????????????????????????????????0?111??1?1000110?11101?????????????????????????????????????12110?0???????????????????????????? Shunosaurus 10000100000000000?01000000000000000?000000000000000?000?0000000000?00?0020010??0000?00010000?0000001??0010?1??0100?0?01?001000?000100000000000?0000000000000000?01100?00110100000000?000?10?00?00?0100 Supersaurus ???????????????????????????????????????????????????????????????????????0?1011010?1??11?????1???01???1?0?0?0??1100111111000101000?000111101100??110111001??0????100000?10????????010010001?????1??????? Suuwassea ?12111??????1???000?0??????1100??01111000101????0100??111??????11???001??1010010100010010??00?001???01??1?0??0?0?10??0????10???????????1100?0?????????0110??00?111000?00?011??????????????????0????1?? Tornieria 002111???????????00????????????????11?100000?1?0??01??????1????111?1??10?1001011?????1000???1?????????????????????????????????00?0101111011?1001101?10110000???????0001010011???0??0100011011011111??? Zapalasaurus ???????????????????????????????????????????????????????????????????????0?111001??00????????????????????????????????????????????1?1?11??0000101?0?00100010100??????????????????????0001000???0????????? ; END; BEGIN TREES; TITLE Archaeopteryx; LINK TAXA = Taxa1; TRANSLATE 1 Shunosaurus, 2 Omeisaurus, 3 Jobaria, 4 Camarasaurus, 5 Brachiosaurus, 6 Australodocus, 7 Haplocanthosaurus, 8 Amphicoelias, 9 Losillasaurus, 10 Dinheirosaurus, 11 Amazonsaurus, 12 Apatosaurus, 13 Barosaurus, 14 Diplodocus, 15 Supersaurus, 16 Tornieria, 17 Amargasaurus, 18 Brachytrachelopan, 19 Dicraeosaurus, 20 Suuwassea, 21 Histriasaurus, 22 Rebbachisaurus, 23 Limaysaurus, 24 Cathartesaura, 25 Zapalasaurus, 26 Nigersaurus, 27 Demandasaurus; TREE Imported_tree_0 = [&R] (1,(2,(3,((4,9,(5,6)),(7,(8,(((12,((10,15),(16,(13,14)))),(20,(17,(18,19)))),(11,(21,22,25,(23,24),(26,27)))))))))); END;