#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 23, 2024; 17:45 GMT TreeBASE (cc) 1994-2008 Study reference: Dongyu H., Lianhai H., Lijun Z., & Xing X. 2010. A pre-Archaeopteryx troodontid theropod from China with long feathers on the metatarsus. Nature, 461: 640-643. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S13216] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=87; TAXLABELS Achillobator_giganticus Adasaurus_mongoliensis Allosaurus_fragilis Alvarezsaurus_calvoi Alxasaurus_elesitaiensis Anchiornis_huxleyi Anserimimus_planinychus Archaeopteryx_lithographica Archaeornithomimus_asiaticus Atrociraptor_marshalli Avimimus_portentosus Bambiraptor_feinbergi Beipiaosaurus_inexpectus Buitreraptor_gonzalezorum Byronosaurus_jaffei Caenagnathus_collinsi Caudipteryx Chirostenotes_pergracilis Citipati_osmolskae Coelurus_fragilis Compsognathus_longipes Conchoraptor_gracilis Confuciusornis_sanctus Deinocheirus_mirificus Deinonychus_antirrhopus Dilong_paradoxus Dromaeosaurus_albertensis Elmisaurus_rarus Eotyrannus_lengi Epidendrosaurus_ningchengensis Epidexipteryx_ningchengensis Erliansaurus_bellamanus Erlikosaurus_andrewsi Falcarius_utahensis Gallimimus_bullatus Garudimimus_brevipes Gorgosaurus_libratus Hagryphus_giganteus Harpymimus_okladnikovi Heyuannia_huangi Huaxiagnathus_orientalis IGM100_slash_1015_undescribed_dromaeosaurid IGM100_slash_42_unnamed_oviraptorid IGM100_slash_44_unnamed_troodontid Incisivosaurus_gauthieri Ingenia_yanshini Jeholornis_prima Khaan_mckennai Mei_long Microraptor_zhaoianus Microvenator_celer Mononykus_olecranus NGMC91_unnamed_dromaeosaurid Nanshiungosaurus_brevispinus Neimongosaurus_yangi Nothronychus_mckinleyi Ornitholestes_hermanni Ornithomimus_edmontonicus Oviraptor_philoceratops Patagonykus_puertai Pelecanimimus_polyodon Protarchaeopteryx_robusta Protopteryx_fengningensis Rahonavis_ostromi Rinchenia_mongoliensis Sapeornis_chaoyangensis Saurornithoides_junior Saurornithoides_mongoliensis Saurornitholestes_langstoni Segnosaurus_galbiensis Shenzhousaurus_orientalis Shuvuuia_deserti Sinornithoides_youngi Sinornithosaurus_millenii Sinosauropteryx_prima Sinovenator_changii Sinraptor Struthiomimus_altus Tanycolagreus_topwilsoni Therizinosaurus_cheloniformis Troodon_formosus Tyrannosaurus_rex Unenlagia Utahraptor_ostrommaysi Velociraptor_mongoliensis Wellnhoferia_grandis Yanornis_martini ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M13986] TITLE Character_Matrix; LINK TAXA = Taxa1; DIMENSIONS NCHAR=363; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3 4" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Achillobator_giganticus ?????????????????????????01110????????????????????????????????????????????????????000101??????0?01200?111100?????????011??1?????????0101?????????????00?010220?0111100100?011010?00?11110?0????00?000?101????0???????1???0????????0?000??????013?????????????????10??00000??00??0???1???????????0?????01?0????0000100100?1??????11??????1000000?0??????????0??1?????0???0?? Adasaurus_mongoliensis ??1100?????????????????????????0?????001???????????0????0???????????????0?????0?0?0????????01???0?2?01?1?????011000????1????????????0??1?1???????????????002211001110???0????021?0??1???00?????????001100?0010?????0?1??000???????0?000???????????0???????1????0?????01111??00?0??????????????????????????????02???011?1011000101110????12???01?00??01??????1???0????0?0000 Allosaurus_fragilis ?11000?0000000000010001000100000011101100201?2000000000000010000000000000010000000000101010010000000100100000000001?01000000001????0000000000100010100010100000010000010100000000000000011000000100000000000000000001000000000000000000000000000000000000000000100000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000 Alvarezsaurus_calvoi ??????????????????????????????????????????????????????????????????????????????????????????????1???100??????????2?1??2?12????????????0?0?0?????????????1???00111?0??2????????????????1?00???0?01??10000000???0????????1???0??????????0????????????????????????????????111110??0?????????????????????????0?1????0??????????1?????000?0???????0??1000???0?????11??1????000???? Alxasaurus_elesitaiensis ?????????????????????????????????????????????????????????????????220?100???????????0100001??????????0?01?00000?1?001??02?0?1??????????????000?0?10000000010021?00??100210?0?1?2?????0?????00????????000002?0000??0???1??00?0???11??1111?????????????????????00???0?011111??????0?100101?011??00?1??????11001??1?001???00???????00000??0?1??000?010001?0????000????????0?000 Anchiornis_huxleyi 001100?????????????11010??111?00?????0?2?000??1????1?1???????????000??01??1?????00020??01??0?101???00?0??010?01???01101210??011????011131110000??1000000010?21?1001102200?1?112112???1?1?000??1?01?000121100010?1000?1??00?0???0????030110?1101000100100?01?0???0?0?011111101?0001112011010100010101001110010102001011?1011000?20?1100001000?121000?00000110101?0??00000000 Anserimimus_planinychus ????????????????????????????????????????????????????????????????????????????????????????????????????????0?????????????????0??????????1???1?2????000110100??????????????????????????????????????????00002?3?00????11??10??1?1???????????????????????????????????????????????????1???0??0?1?00011100010000022001???????????1?0?????????100??????2???00???11??1?0???????1????? Archaeopteryx_lithographica 101?0010??000??112011010??11100?011?00002100010?0000?0??100111?10000001000002?0000020??00000?1?1??100?0??010?0???0021012111000?????001011110000?11000000101121?0001?002000121011101?111100000?10010010?0010?0000001001100000?0?0000102001011101000100100101?0??00?0001?11110?3?0121130110?0100010001000010010202010011?1011011120010000010000121000000000110101?00000000000 Archaeornithomimus_asiaticus ???????????????????????????????????????????????????????????????????????????????????????????????000110001000001?100000000?0??????????010201?20100??0?10100???000?1100011001?00?00100000001?00010001000001?3?0000??01??10??1?1????000???????????????????????????????????1110??00??0?10?0??110?0001000?1??001200??00010100?11?0??????????0000?000100?00???11??1?001????010?000 Atrociraptor_marshalli ??????????????????????????1110??????????????????????????????????????0?1????1????01000111?00?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????0??????0???0?00??00?00?3??????0?????010?0110??????????????????????????????????????????????????????????????????????????????????????????????????????? Avimimus_portentosus ?01?0???10001?00??0??1?1????????1???1?????00?11??0?00100110??????2?1???00?0??0110???3???????011011110101?0?00??100???????????????????11?000100???110?????00?211?01??0?2000???010100001100?0???10011110020???00??0???01?0??00000?00??0?????0???????1?????1011???0?????001?????????111??1??????0?????????????????00??011?101?0???00000????1000002?0000?0?????????10??011?0000 Bambiraptor_feinbergi ?0110?????0?0?1??1??00?0?01110000??10?01??10?1????0?01?0?????????00??010??1??0000?01011100?????0?120011??10??0???0011??110?????0011001011110?001?1010000010?21?001110020001?1021100?1?110000??10010001101?0?000?00?0?1??0000????000?0000000?1013001??100101?10?011100011011000?00111201011010001000001011001010201101101?100001001100?001200101100000100001011110???0000000 Beipiaosaurus_inexpectus ??????????????????????????????????????????????????????????????????2??1?????????????0100001????????1?????????????????????1??????????0???0?????????00?0000?100????????????????????????00?0????10??0?000?????0?????????????0??????111???1????0?????????????????00?????????????0????0????0100?1100010?010?0?100?0?1?????11?0????0?1?????0?00????????1???0?0?0??0?0???????00?000 Buitreraptor_gonzalezorum ?0110???????????????00001011??00??????????100?10??0011?0?????????00??001??????????021??100?0010111100111?010???100011012?021???????01101111010?1?100?0??????11?101??122??1?111?110???11?0??0??1?011?011210000????????1??00?0????000????0???????1001001?0?01?0??????0?0?111?00?10011120????????????????????????0?101?1????1?0???0?2??????12011021??000?0??1??1?1?0??0?0000?0 Byronosaurus_jaffei ?????101???101?1100110101011?00??????20220????????????1?100??????0000001??11????00021??01?0?0???????010110????????0??02??????????????????????????????????????????????????????????????1????0?0??0????????1??????????0????0????100???0?00?100?101100??0100???10?00110?????????????????????????????????????????????????????????????11????????????????????0??11?????0?????????? Caenagnathus_collinsi ?????????????????????????????????????????????????????????????????20110?00100?011????3??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????00??0??????0????0????????????????????????????1?10??????????????????????????????????????????????????????????????????????????????????????0????????????0???0??? Caudipteryx 00110??????????????0?110?010000011?00013210001?00?00?????????????21010?00?????10031?3?????00????0?100????????0???01????210?111000??001010001?00??1000000010020???11?02200?111?10?10?11?01??0????01000002000000000010?110?000???0?00?0??10001001000110100111?0010?????001110?10?0001110100?01000000010?0001101?00001011?1011000000000???010000010000000000110101?0??00001000 Chirostenotes_pergracilis ????????01?01101??0???1?11??0?????????????????????????01110????0??????????????????1???????????????1101?11????1?12????????????????????101?????????????000110021?0001?0220001110?00?0?????0?????10?100?00100000????0???1???0?0?00????????????????????????????1?????????1?1????????0??????00??????000010?0?1001000?001?1??101?000000010001110000?1?000000??0??0????????001???? Citipati_osmolskae ?011001001001??2210001111110001011?10013210001100000110011000110221120?0110010111?1?3??????1011001100101111001??20???002100111?011111?010000100?11000001110021100?110220?0??1010010?1101000000100?0000010000000100100110?000000000??0???01010110101001110101001??????10????010?0010110100101000000000000000100??????1??101?00000001011001000001??00000100?10?01?1110?0?1000 Coelurus_fragilis ??????????????????????????????????????????????????????????????????2??000????????????0????1????0000100?010000?????????002????????????0?0??0?00100??01?0??????????????????1?????1100000000100?0000?1000?0??????00??0????0?0??0???000??????????????????????????00???????10110??00???111100??1?1????0001000????????????010?101?0??????????11??1?0?1???00??00??????00????000?000 Compsognathus_longipes ?0110?????????????????1???1??0?????00000???0?01???????00?????????0000010??0???0?0001010101000?010?10?0???0?0?????01??0?2000001??????0?000?00?10???0???0???0?????????00100?100?01?0?????????00?0???000000000001100?00????0?0????0???0000000011010?0100100001?00??0?0?0001100?0001010010????????????????0?0?10??0100101??1011000000000??0?00?00010?000000??1110?000??00000000 Conchoraptor_gracilis ?0110??????????1???00111?1100?1011?1001321000110?000?????1?0????221120?010?0?0111?1?3???????????????010??1?012?110??1???0?0111???1?11?11000010????????011?00210001?102???0???01001??11010?0????0??000000??0?0???00??0110??0?000000??0???0101011?101001110101???????????????0?????1?1????010?0???0?00?0000111000??????1???110???????0?0001000000?????0???0?10?0??0110101?000 Confuciusornis_sanctus 10110??????????????11000?0???00001???0??2??0?01??0?0???01???????000010000?10?0001?1?3??????0???1??1????01110?2???0??????2??111?110100013111400011111000010112101????100?0012103210111??10??11?1121111010010?000000100110?000???001??0??0011?????00100000?01?0?10?????11111?0001012112111010100000101010110010002???011?1?1101112000101101??0011?000000000?10?01?0??100?2000 Deinocheirus_mirificus ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????1?00000100??0?10000????????????????????????????????????????????????????????0???????0?0????0????????????????????????????????????????????0?0??10?0??1100000100000000000001??????????????????????1100??????????00???11??1?0????????????? Deinonychus_antirrhopus ?0110????1???????11?0000?0111000011100012??????0?1????0?00?11010?000?0100111?1000?010111000?1100012001?111011????00110110?21?10???1?010111101001110000001002211001110020001110?01001111100000010010001101000000?00?001100000?0?000?0000??00?0013000?000????000?1?110001001??????0111101001010001000000011001020000101100011000101110000012?00001000001000010101100000000000 Dilong_paradoxus ??100?????000???????0010??10100000?0?0101?0??2?000??1??0?0???????000?000??0???00000001010?1???00?0101????0????????1????0?0?0?1?0??????020?10??????0?00000000?1??????0?101?0?1??1?0???0?????0??????????100?0??00??0?0????0?0????0???0?0000000001310000000000?0???110?0001100?0001011?1??00?10000100010000000001?0001010?10110000000000010???0?01?00??0?0?0000100?0???0000000 Dromaeosaurus_albertensis ?0??001000000000010??0?0?0???0??01110????1111????10001?1001100???0000010011111000?000101000?????????????????????????????????????????????????????????????????????????????????????????????????????????????1??????00??????00?0?0000???0?00?000?00????0??00?0010010100000??????????????????????????????????????????????????????????0111???????????????????0??01?????000????0??? Elmisaurus_rarus ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????0??01?1??????????????????????????????????????????100010??01????0??????????????????????????????????????????????????????????????????????0??????000010000?0??00??????????01?0?0000010??11??????1??0??00??0??1???1?????1????? Eotyrannus_lengi ?????????????????????0?1?????????????0?0?????????????????????????00??0?0????????0000?10??01???00??1?1???????????????????????????????0?0?0?000????????000???????????????????????????????????????0???00????????????0?0????00??????00???00??00?00??11??0?0?????01?111?00?0?????00????11?0??0??1?0?0??0?0??0?00????????????????????????????1??????1??000??0?00?0???00?????????? Epidendrosaurus_ningchengensis ?0?????????????????????????????????10000?1?00???????????0????????2??00000?002000??????????????????????00?010?00???01?01011????1??????1011?10?00??10100000011?1???1??020?0?0?1?02?0??1?0100?0???0?????000010?000?0110?1??100????00?0?0??0??????????1??????01???10????00?1111????002102010??010001000000000000000????011?1?1?0110200001100???00011000000010?11101?0??1?000111 Epidexipteryx_ningchengensis ?0????????????????????????????00???000??00?0011????000????????????110?0?0????00001020??10000?????????0???0?0?1???102??123??100?1????0101?01000???????00??011?10?????020?0?011?02?0?????????0????01111??0?10??00???10??1?1?0?1??000???110??01?????????????01?1???0?1?00?111???0?0021120?????1?0????????000000??00???01??10110????????????10?000110?000?0??1?1??11???100?0111 Erliansaurus_bellamanus ?????????????????????????????????????????????????????????????????????????????????????????????????????1???0???????????0????????????????????00?10???0?00010????1???1?????????????????0??0??000?000?????????????????0??????????????11?????????????????????????????????????????????0?10010?00111000010100001100001??????01??????????????0100????????1?00???00??0?1?????0????0?? Erlikosaurus_andrewsi ?0110??02?1?1?0???010011100??10001?100000100011000?0??00100??11112200100000020001?00100001?????????????????????????????????????????????????0???????????????????????????????????????????????????????0?00?021????00??01??00?0?000111?1?11?0001001?001001000010000000001?????????????0????????????????????????????????????0?0?001100001??????????0??111100???1?????0100???0??? Falcarius_utahensis ?01??01000??01?0121??????0???1????????????00??????0?1?00000???????0??000??????????00110000????10?01101?101?000?110011102?011?????????00?100011011?0000000100?11001010220001?10101000000010001001010000000?00000??0???10?00?0?0111111111????????????????????00?????0001?11???0?????11?01?0111000100010000000100021?101????0?0?0?00?000010???000000000000?0??0?0???????00?000 Gallimimus_bullatus ?01110?11011010101021001101?01002110000000000000000100000001?01010000000001020001?1?3??????0011001100001000001?100000000000100??????0112010201000?01101001000000110001100100000010000000110001000100000203?0000011111101?1110010000?0??1100110120010010010100000?????111100?00?0011010001100000100001000011002000010101111?0???100001100000000200000?0011?11100100000100000 Garudimimus_brevipes ?0110????01101????021001101001000??002000000000010?1??0?0001??1??0000000000020001?1?3???????01100???000??0?001??0????????????????????????????????????????10000001100??????????00?000000010000?0001000001??0000?01??1110??11?0010????0??1100110120010010010100000?????11110????????????????????????????????????0????010110110010???00??????000?1000??000???1????000000000000 Gorgosaurus_libratus ?10000?00?000?0???10000110111000000001101201?21100?010010001????00000000001001000000010101101000000??00101000000101?00000000001????00000000101000001010001001000100000101100101000000000100001000100000200000001000000000000?0100010000000000010110000000000010110000000000001110000000?01100101000?0?000000??0100100101011000000000???000100010000000010000100000000100000 Hagryphus_giganteus ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????10000001????????????????????????????????????????????????????????0????????????????????????????????????????????????????????????????????0?0111000000010001?00100??????????????????????0?11????????????????0??0?0????????????? Harpymimus_okladnikovi ?011???????????????21000????000??????0000??00????????????????????020000?0000????1?122????0?0???00?110001?00001?10000?00000?1????????0?0?0?00010010010020010??00011???0???????????00??????????????00000010??0000?10110???1?00???000?1?2011001101?00100?00101?00?0???0000110??00?0??10?00001000001000000000010020????0????01?0???00000010000?00?1?0000?0000??110?00?0?0000??? Heyuannia_huangi ??11????????????????????????????????0?????????????0???????????????1120?011?0??1?????3??????1???????????????0?2???????????0?111?????11??10?00?10??1110?01010021???1??0220??011?1??1??1?010000?0?0????0000000?001??01??1????00???0????0??1????????????????????0?1??????00?110010?00?01?01000010000001?0?00?01???00000011?1?1?0?0001000???010?0?00?0000001?1??0?01?0????01?000 Huaxiagnathus_orientalis ?01?0??????????????0001???1??0?0?????00??0?0?????????????????????00?0010??????0?000101010?00??0???1????????0??????1????2?000010????000000000?10??1010000000020?0??1000100?000001?0??0???0??0??0?01000000000?011??000????00?0???0???0000000011010?0100100001?0???1?0?00011?0?0000010010000?00000100010?0000000?0100101??10110000000?0001000?00010000000000?10000?0????000000 IGM100_slash_1015_undescribed_dromaeosaurid ?011001001000012011200001010100001?100012110110001000??00001?0???00000100?11110001010101000????0??2?????????????????????????????????????????????????????????????????????????????????????????????????????????????0??00??00?0?0000???0?0??00010013?0001000001?1???0?0?0?????????????????????????????????????????????????????????????????????????????????0???1?????0?????????? IGM100_slash_42_unnamed_oviraptorid ?0110??????????????001111110?01011?100132100?11??000???01100?111221120?01100??111?1?3??????10??0??1??1?1?1???1???01??00?10?1???01?1111110000?0???100000011002110?1110220??1?1010?1??1?01000????????000010000000100?001?0??00?0?0?00?0??101010110101001110101??10?????001010010?001011?100?010001?000000000010000001011?10110???00000110010?00010001000100?10101111101011??? IGM100_slash_44_unnamed_troodontid ??????012???????????????????????????????????????????1??0???????????????1??11???????1?0??????0????????????????????????????????????????????????????10000000????????????????????????????????????????????01?1?001???00??????0?0??1???????3?????????????????????1???0??????????????????????1?0101000?000????00000?????????????1???0?1111????0?????????0???0?????0?0??????????000 Incisivosaurus_gauthieri ?0110???1??01?????1000101010001001?0?010??00011000?01010110101111200100001001?1?02022??0002????????????????????????????????????????????????????????????????????????????????????????????????????????????????????00??00??00?0??000???0010?00010?10?010010010110010??001?????????????????????????????????????????????????????????????????????????????????0??11?????0110???0??? Ingenia_yanshini ?01?0????????????????11111100010?1?1??132??0?1???0?0??0011?????1221120?01100?0111?1?3??????????0??1??1???1???2???01????2100???0011111111?000000??10000010100211??11?022000011010?110110100000?100100000000000?1100?0?11??000?0?0000?0??101010110?01?01110?010?10??????????0010?001011010010100000010000000110000001011?101?00?????00100010000000000000101?10101101100011000 Jeholornis_prima 10?????????????????1?????0??????????0??????0?????????????????????120?010??00200?1?1?2??0???0?????????????1???1????02???211?1????1?1?0103?110?00??1100000001221??0???10??0?????21?0?????1?000??1?01011??0010?000?0010????1000???00?0102?0?0?1????0?10?1???01?01?0????01?1111?031012113011??011000?110011000000002???01??1?1?01112000100101??0?111000000000?10101?0??1??00000 Khaan_mckennai ?0110??????????????00111?110?01011?1001321000110?000??00110??????21120?01?00?0111??????????10110??1??1011110??????1??00210?111001??111110000?00?1100000111002110?1110220001?101??1??110100?0??10010000000000000100100110?000???000??0??1010101101010011101010?10?????001110010?001011010010100000000000000110000001011?1011000000000100010000000000000100?10101?0?101011000 Mei_long ?0?????????????????11010?????00?01?000022100001?10?010??100??????00010010??1?0000?021??01?0011011110010?1010?01???011012?111011????101?11?10?0?1?10000000???2111?1???020??11101110?0111100?0101101?0001?11011?0?0000???00000????0????0?110011???001?0100101??????????1111??00010011110?0??0?????0??????00000????????1??1?11100?1?1??000?11??1?21?000000?01?010110???0?00000 Microraptor_zhaoianus 1?1?????????????????00????????????????????????????????????????????0??010?0?1????0?0100000?????001?1??01?1000?01???0110?11?2111?01?100?1?1?10100?1101000011012110?011002?0?111022100?11111??00?1001?10112110??00??010?11?000????0??00?00?100?1?????????00??1?1?0???0??0?11110001001112110??0110000100011110010002111110?1?100001201110000020?11210000010001?0101?0???000?000 Microvenator_celer ?????????????????????????????????????????????????????????????????21?10?0????????????????????011?0?11000111100???0???1002?????????????1000??01000??????0??1002???0111????0?????10110?0101100?0010010???????0??0???0???11??0?0????00??0???????????????????????00???????0?111??????011110??0???????????????0?0???0????011?????????????????????0????00000?1????0????????0??1??? Mononykus_olecranus ??????00???????112??????????????????????????????????????100????????????????????????2???0???????01?1?111010011????1??2??????1???1000?000200030210?1122?1100??1????1??000???????3??0?0110100111011211000020?00001??00???1??0?0????01??000??????0???????????????????????0?111??00?00000000?010001000?????00?1??????????111??1??00000000????0??00???001100?1???1?00?????010?000 NGMC91_unnamed_dromaeosaurid ?011???????????????200????11??00?????001???0??????????????????????0000100??1??0?0?010??10??0??????????????????????01???1????1?????10??031?10?00??1?100001??????????????????????????????1???0????????????11????0???10????000????10????00010011013?01?1100??1?1?0?1?0?00?????0?0?001112110??011000?1000110100100??????1??1?1??001201110000??????21?0000100011010??0??????0000 Nanshiungosaurus_brevispinus ????????????????????????????????????????????????????????????????????????????????????????????????????0001?00??0???0???????????????????????????????????????1?0???0???20020?0?0102?????????????????????????????????????????????????????2????????????????????????????????1?010????????????????????????????????????10011??????????????????????0???0??1???1???????????????0???000 Neimongosaurus_yangi ?????????????????????????????????????????????????????????????????21????0???????????0?000?1?1??10011?0101?0?0?1??2?01000210?1???????0001000000????????????1??21100??2???????????????00?00000????0??000000?20100?????0?1???0?0????11?121????0?????????????????0??????0111110000???010?1???????????????????????????????010000?00??0000????????0??001110100?????0?01????000?000 Nothronychus_mckinleyi ?????010?????????20???????????????????????????????????00100???????????????????????001000??????00001101??100001??????1???1???????????0?0????01100????????????????????0021?0?110?????????0???010???????0???????????0??????0?????0?1111?1???????????????????????????0???101?0???0?0??00?????????????????????000????001?0??????????????1????11???1????00???????0????????0?????? Ornitholestes_hermanni ?0110???0?0?00?1???0?010?011100001?000000?00?100000001?01011?????00000000000?000000?0101000???00011?110110000??100??0010??1????????????????0?000??????00010001??010?0010?000101?10000001??0????????00000????00000?0010?00?0?00?00010000100010010?01??1000?100?000?00001110???????11010?0????????0?????000100??010010?0?101?0???????0????000000100000??0??1101??000000000000 Ornithomimus_edmontonicus ?01110?110?101?101021001101?0100211000000000000000010000000??????00000000010??001?1?3??????001?0011000010000010100000000?001001?????011201020100000?101001000000110001100100000010000000110001000100000203?0000111111101?11100?000??0??11011101200100100101?0?0??????1?1100?0011011010?01?0001110001100002200200001010?111?0???10000110000?000200000?0011?11100??0000100000 Oviraptor_philoceratops ?0110??????????1??00?????111?0?011???0132??0?1?0???0?100?????1????1120?01100?01?1?1?3??????0??1???1??????1?0?????????????????1?????11?1?0?000001?110?0001???21?00????????????????????????????????????????????00100100?????00?0000???????01?1?010??1??1?00?010?10?????0?111?010?00?11?01??101000000000000000100??????????????????????1000??????????00??100?10?01?0?10???1?00 Patagonykus_puertai ??????????????????????????????????????????????????????????????????????????????????????????????????????111????????1??2????????????????0020??30210?110??110????????1??????0?????10?00?11?1?00???10011?0??0?????01??0???1???0??????010????????????????????????????????????1?1???????????00?0???????0?????00?1???????????11??1????0????????????????????1???????1?????????00???? Pelecanimimus_polyodon ?01???1???1????1?2?21000??10010?????02000?00???????1????000??????000?0000?00??0?00021??0001???10011?00????0????????????????????0100???02???2?10??00110200?????????????????????????????????????????????????????001010????1?1????0???1?10?1001100200100100101?0??00?010001????????0?10?00?1100011100001000012002??????????????????????1100???0?0????????011111?0??0?000??0??? Protarchaeopteryx_robusta ?????????????????????0????????????????????????????????????????????0??000????????02022??0002????00?1???????????????01????10?????0???0???1?????00??10100000002?1???????2200?1?1????00?1???0???????????0???000?000???10??????0????00??1?101??0?0?????1?0?0????????????010?11?0000?001111000??010??10?01000100000000001011?1?1?000000??00000??0000100?000000011010?1???????0000 Protopteryx_fengningensis 10?????????????????110???????????????0????????????01?????????????000??1???????0?0??2???0??0?????????0?????1??2??????????2??111?11?11??031?10000??1120000001?????????????0?1?1??????????1???1????????1110010?0?0??0101????00?????0????2?01?111???00?10?00?01?0???????01?????1?3?012113111??011000?110010110001???????11?1?1?0111200?0??10??????1??00000000110?01?0????0??000 Rahonavis_ostromi ????????????????????????????????????????????????????????????????????????????????????????????????????011111?0?1?11?011012?02?????????0????11??000?????????01121100111102?001?101??00111?10000??1??100011010000????????1?????0??????0?0??????????????????????????????????1111??3?0???130????????????????????????0211?011?101?01?10021?????11?11?1100??01??????1?11?????00?000 Rinchenia_mongoliensis ?01?0????0??????????0111?1????1011?10013??00???000?0??????00??1?221120?01100??111?1?3??????1?????????1???1???1???0??????1?????????111?1??00000???1?0??00?10??1??0?????????????????????????0????0????0???????0??10??001????00???0?????????10101???01?01110?010?10?????????????????1????????????????????????????0??????1??????????????????????????0?????1???1?????11100?11??? Sapeornis_chaoyangensis ?011???????????????11011?????00001?000002??0011???00?????????????000?010??00?00000??3??????0????????0?00?010?2???0??????21?1001????100011110?00??1120000?011?1??01??100?0?1?1021101???010000???0??1110000???000?0010?1???000???1010?0??0?0?1101?00100?0??01?0??0?????1?111?0031012113111?1011100?1110011100?1?02???011?1?110111????1??101?00?01?000000000110?0110??1?00?000 Saurornithoides_junior ?01101?12?110100?001?000??100?000????2022000?21??0????11100??????100?001???1????00011010100??????????????????1?1000?1020????????????????????????????????????????????????????????????????????????01?????????????????00??00???1100???0?30?1001101?001000001010000?110?0?????0??????????????????????????????????????????????1??????????????1?????????????0??01?1???0?0??1????? Saurornithoides_mongoliensis ?01??1?1??1101???0?110001?10000????????2???????????????????1?010?100?0010??1????0001101010????????1???0??0?????100??1????0??????????????????????????????????????????002000?0101?10??11110??????????00??211?01??????0??1?0?????00??00?30?0001101100100000??1?0???1?010??1??0????????????????????????????????????0011??1???1??01011110????100??0???0????0??01?????000??10???? Saurornitholestes_langstoni ?????????????????????????01110????????????111??????????????11????0???010?????00???010111000?11000120011111011011100?1011??11??????????01?1???????10??000100221?0?11?????????????????????????????????????????0???00?0????00?000?0???0000??????013?????0??00??10?1?1000011????00100?????1????????????????11001??0???????????????????1??00?1??010??0?????0??0?0?01?0???0?????? Segnosaurus_galbiensis ??????????????????????????????????????????????????????????????????2??10?0000?000???0100001???????????????????????0??????????????????0?10?1?00????????0???100211001?200210?0?1020?0????????00??0?00??0000?21?0??00????1??0?0????111012111????????????????????00?????01???????021?0?0??0????????????????????????1000100??0?010011???01???????001??11?01?0???????01?????0?0000 Shenzhousaurus_orientalis ???????????????????210001?10??0??1???000??00?000?00????????????0?00000000??0??0?1?122??1????????????0????0???0???00000???0???????????????????????????020010000??110?00100?000000100?00001?0??????????????????0??1??1?0011??????0??01020?100??0?100?00?00????0???????0??1100????????????0??0??0?10?0010?0010?0200?0?0?0??????????????100?0??0?0?00?????0???11?0??0?0???00000 Shuvuuia_deserti ?0110100000000?112010000?00??00?111??000010000101010010010???1?110001000000021000?021??000??0111111011101?0??1?201??2012000100?1000?00020?03021??1122011000?1?1011?2000?00021032?0??1101001110112110000201000?11000001100000010001?1??0?100110??0010010010110?00??0?0???????001?00000??0???001?000??0?000110???0????1??111?000?0010011000?00002?001100012111101?0?0?0100000 Sinornithoides_youngi ?0??0??????????????1?000??1???0????0020?2???????1?0??????????????00??0010???????000110101??????11?1001???????????0011?12102101??????01?11??0?00??10000000???????????0?200?????1?1???11110?????1????0001?11001?0??010????0000???00????30110011011??1?0100??1?000?1?0?011???0?00??01111010010100010000000000000???0???11?1111100011111000010????210000000001?010110???0?0?000 Sinornithosaurus_millenii ?011??????0??????????00???11100????10001?1100?1???0?01???????????00?00100??1????0101011100????????1??1???????0???00?1??1???????0111?01031110?00???0?0000010?211?0??10?2?0?111022?0????1???????1?01000112110?0?000?1001??0000???0??00?0001001101300?0?100101?1?00110?0??????00010011121?00101100001000111100001?211111??1?100001201?0000012??112?000001000110101?0????0??000 Sinosauropteryx_prima ?01?0??????????????0001???1??0?0?????0000??0???00??010???????????000?01?0?????0?000101010?00??01??100????0?0?0????1??11200000100????00000?00?10??1010001000020??????00100?100?01?0??00?00?000?0?01000000000?011??0000?000000???0???000000001101000100100001?0???0?0?0001101?0001000000000?0000010001000000100001001010?1?110000000000?10000??010000000001110000?0???0000000 Sinovenator_changii ?0???1002?000011120000101?11100???1??????000011???011?10100??????000?001??????0000021??01??????1?111000110100001000110????1?????????010111?0??????????000???21??0111002000111011100?11110000???0010001001??000?????0?1??000011?0??0??001100?10?000??010?1?1100??0?00001111??00100???????????????0?????000000???2011011?101?1???0011??0??1000102?00??000??1?0??110???00??000 Sinraptor ?11000??00?00000001000100010?00000010110020102?00000000000010000?00000000?10?00000000101010010000000100100000000001?0??????????1?00?0?0??00??????????00??10000?0100?001000000001000000001100000010000000000000?100?000?00?000000??0000000000000000000000000000010000000100??00?0???????0?00??00?0????????00???02000000000010?0000000??0?0000000?00??000??001?00000000000000 Struthiomimus_altus ?01110?110??0??101021001101?010021100000000000000001?0000001?01??0000000001020001?1?3??????001?10110000100000101000000000001001?????0112010201000001101001000000110001100100000000000000110001000100000203?0000111111101?111001000??0??1100110120010010010100?10?????1111000001001101000110000110000100001100200001010?11110???10000110000?000200000?0011?1110010?000100??? Tanycolagreus_topwilsoni ??00?????????????????0?0??????0????00000??????????0?00???????????????????????00000?????1??0???????????010000????????0??0????????????000000000100??0100010???????????????1??????10000000010000000010000000?00000??0????1??000????00????????0?0???00??0?0?????????1??????110??0010011110000111000100010001000001?????010010110000000000011??1?0?1??00000?00??0?000?????0????? Therizinosaurus_cheloniformis ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????001000?0?00??001000?0????????????????????????????????????????????????????????0???????0?0????11??????????????????????????????????????????02??0?00??0?011??000101?0???1?10??????????????????????????????????????11???0???0?10???????????? Troodon_formosus ???1?1112?1101000001???0?010100??????20220000210?00?1?01100????0?10??001??????????011010100???1111100101101111?1000?1020??11???????????????010????0??????????1????????????????1??0?011?100??????0100001210?01????0?0????0??01000???0?30??????0?1????????10?000???1?10??111?????????1?01?0???????????????????????????????11?101011110??????0?101??0??000??0?????10???01??000 Tyrannosaurus_rex ?10000?00?00000002100001101010000000001012010211000010010001?000000000000010010000000101011010000000100101000000101?00000000??1????0000000010100??0?0100010010001000001011011010000000001000010001000002000000010000000000000010001000000000001011000000000001011000000000000101000000?001110001000?0?00?0????01001001010110?0000000???000100000000000010000100000000100000 Unenlagia ??????????????????????????????????????????????????????????????????????????????????????????????????????1111?01????0???????0??????????0?0??1?01????????????01221110?111020101???1112011?01??0??????????????????0???????11???????????0?0??????????????????????????????????101??0??0?11????????????????????1?0????02???011????????????1?????1221????0?00??????????1?????????000 Utahraptor_ostrommaysi ?????????????????????0?0???????????00???????????????????????????????????????????01???101??0????00??1011111?0??????0?1011??????????????01????????????????????2?????11001??0???0??????1???000????00?0??????????????????????0????????0???????0?0????????????????????0?????000??????????????????????????????????????001?00??????????????????10???0???????????0??????????0?????? Velociraptor_mongoliensis ?0110010010000120112000010111000011100012111?100010001000011101010000010011110000101011100001100012001111101111100011011102111001110011111101001110000001002211001110020001111211001111000000010010101101001000000?001100000000000000000000100130000100000101001010000110100001001111010010100010000000110010202001011?001100000111000001200101100000100001010110000?000000 Wellnhoferia_grandis ?0?????????????????110?0?????????????????????????????????????????00??010????????00020220020??????????????????0????02?00231??00??????01011110?0????0?0000001??1????1??0??0?1?1?11?01?1?0100?0????01001???010?000??010????00?0???1000?0200101?1???????0?00????0???0?0?0??11?1?0310?21130?10?0110010001000010010202???011?1?110111200?000001??001210000000001?0101???????0?000 Yanornis_martini ?01????????????????111?0??????0??????0???????????0?1?0???????????000?011??00????00020??0000????11??????????0?2?????????????111?1???0?0031?10?00??1120?00?????????????00???121?32?01???0100?1??11??112?00010?000??010????00?????101?1?200001?1???00110?00??1?00?00?0001111??1???012113111??0110?0011?0?1111101??????01??1?1101??20000???0??????1??00000000110?0??0??10???000 ; END; BEGIN TREES; TITLE Analysis_results; LINK TAXA = Taxa1; TRANSLATE 1 Allosaurus_fragilis, 2 Sinraptor, 3 Dilong_paradoxus, 4 Eotyrannus_lengi, 5 Tyrannosaurus_rex, 6 Gorgosaurus_libratus, 7 Tanycolagreus_topwilsoni, 8 Coelurus_fragilis, 9 Ornitholestes_hermanni, 10 Compsognathus_longipes, 11 Huaxiagnathus_orientalis, 12 Sinosauropteryx_prima, 13 Deinocheirus_mirificus, 14 Harpymimus_okladnikovi, 15 Pelecanimimus_polyodon, 16 Shenzhousaurus_orientalis, 17 Archaeornithomimus_asiaticus, 18 Garudimimus_brevipes, 19 Anserimimus_planinychus, 20 Ornithomimus_edmontonicus, 21 Struthiomimus_altus, 22 Gallimimus_bullatus, 23 Falcarius_utahensis, 24 Beipiaosaurus_inexpectus, 25 Alxasaurus_elesitaiensis, 26 Nothronychus_mckinleyi, 27 Erliansaurus_bellamanus, 28 Nanshiungosaurus_brevispinus, 29 Neimongosaurus_yangi, 30 Segnosaurus_galbiensis, 31 Erlikosaurus_andrewsi, 32 Therizinosaurus_cheloniformis, 33 Patagonykus_puertai, 34 Mononykus_olecranus, 35 Shuvuuia_deserti, 36 Protarchaeopteryx_robusta, 37 Elmisaurus_rarus, 38 Caenagnathus_collinsi, 39 Rinchenia_mongoliensis, 40 Citipati_osmolskae, 41 Ingenia_yanshini, 42 Khaan_mckennai, 43 Heyuannia_huangi, 44 Sinovenator_changii, 45 Mei_long, 46 Byronosaurus_jaffei, 47 Sinornithoides_youngi, 48 IGM100_slash_44_unnamed_troodontid, 49 Troodon_formosus, 50 Saurornithoides_mongoliensis, 51 Saurornithoides_junior, 52 Unenlagia, 53 Buitreraptor_gonzalezorum, 54 Rahonavis_ostromi, 55 Bambiraptor_feinbergi, 56 Sinornithosaurus_millenii, 57 Microraptor_zhaoianus, 58 NGMC91_unnamed_dromaeosaurid, 59 IGM100_slash_1015_undescribed_dromaeosaurid, 60 Adasaurus_mongoliensis, 61 Velociraptor_mongoliensis, 62 Saurornitholestes_langstoni, 63 Deinonychus_antirrhopus, 64 Achillobator_giganticus, 65 Dromaeosaurus_albertensis, 66 Utahraptor_ostrommaysi, 67 Atrociraptor_marshalli, 68 Epidendrosaurus_ningchengensis, 69 Epidexipteryx_ningchengensis, 70 Archaeopteryx_lithographica, 71 Wellnhoferia_grandis, 72 Jeholornis_prima, 73 Sapeornis_chaoyangensis, 74 Confuciusornis_sanctus, 75 Protopteryx_fengningensis, 76 Yanornis_martini, 77 Hagryphus_giganteus, 78 Alvarezsaurus_calvoi, 79 Microvenator_celer, 80 Avimimus_portentosus, 81 Caudipteryx, 82 Oviraptor_philoceratops, 83 Conchoraptor_gracilis, 84 Chirostenotes_pergracilis, 85 Incisivosaurus_gauthieri, 86 IGM100_slash_42_unnamed_oviraptorid, 87 Anchiornis_huxleyi; TREE Figure_4 = [&R] (1,(2,(((3,(4,(5,6))),(7,8)),(((9,((23,(24,(25,(26,27,28,(29,(30,(31,32))))))),((78,(33,(34,35))),((38,80,(36,85),(81,(79,(82,((39,86,(40,(37,77,84))),((41,43),(42,83))))))),(((44,(87,(45,(46,(47,48,(49,(50,51))))))),((54,(52,53)),((55,(56,(57,58))),(59,60,(61,62,(63,(67,(64,(65,66))))))))),((68,69),((70,71),(72,(73,(74,(75,76))))))))))),(14,(13,(16,(15,(18,(17,(22,(21,(19,20)))))))))),(11,(10,12)))))); END;