#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 26, 2024; 8:53 GMT TreeBASE (cc) 1994-2008 Study reference: Aedo C., Fiz-palacios O., Alarcón M.L., Navarro C., & Aldasoro J.J. 2005. Taxonomic revision of Geranium sect. Dissecta (Geraniaceae). Systematic Botany, 30(3): 533-558. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1340] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=8; TAXLABELS Geranium_asphodeloides_1 Geranium_asphodeloides_2 Geranium_crenophilum Geranium_dissectum_1 Geranium_dissectum_2 Geranium_palmatum Geranium_sintenisii_1 Geranium_sintenisii_2 ; END; BEGIN TAXA; TITLE Taxa2; DIMENSIONS NTAX=7; TAXLABELS Geranium_asphodeloides_1 Geranium_asphodeloides_2 Geranium_crenophilum Geranium_dissectum Geranium_palmatum Geranium_sintenisii_1 Geranium_sintenisii_2 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1404] TITLE Dissecta_nrITS; LINK TAXA = Taxa2; DIMENSIONS NCHAR=638; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=n GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Geranium_asphodeloides_1 TCGAACCCTGCACAGCAGAACGACCCGCGAACTCGTTAACAAGCCGCGGGAGGCGGG-CGGCGCATGCGCC-CCCGCAGCCCGATGTCGGGGGCTTGGGCGACGCCC-ACGCTGCCCGGCAAAAAA-CGTACCCCCGGCGCGGTCCGCGCCAAGGAATCGAAACGAAGCAACGTGCGCAGTCCTCCCCGTCCGCGGGGAC-CGGACTGCAA-CACGGACTTCCAATGTATAC---TAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGCCTGCCTGGGCGTCACGC---GCTCCGTCGCCCCGCAACCCCTAACCCCG-AAACGGGC-AGGGTGCTTGTGGTGCGGACATTGGTCTCCCGTGAGCTCTTGCGCTCGCGGCTGGCCTAAAATCGAGTCCCGGGCGCTCTGTT-TGCGGCCGACGGTGGTTGAGAAGCCCTCGAAAATGCGCCGCTGCATTGCTGCCCGACGT-GGACCACGTGACCCTCGCGCGACCTCACCCGT-GGGGTGAGGGAGCTCCATCT Geranium_asphodeloides_2 TCGAACCCTGCACAGCAGAACGACCCGCGAACTCGTTAACAAGCCGCGGGAGGCGGG-CGGCGCATGCGCC-CCCGCAGCCCGATGTCGGGGGCTTGGGCGACGCCC-ACGCTGCCCGGCAAAAAA-CGTACCCCCGGCGCGGTCCGCGCCAAGGAATCGAAACGAAGCAACGTGCGCAGTCCTCCCCGTCCGCGGGGAC-CGGACTGCAA-CACGGACTTCCAATGTATAC---TAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGCCTGCCTGGGCGTCACGC---GCTCCGTCGCCCCGCAACCCCTAACCCCG-AAACGGGC-AGGGTGCTTGTGGTGCGGACATTGGTCTCCCGTGAGCTCTTGCGCTCGCGGCTGGCCTAAAATCGAGTCCCGGGCGCTCTGTT-TGCGGCCGACGGTGGTTGAGAAGCCCTCGAAAATGCGCCGCTGCATTGCTGCCCGACGT-GGACCACGTGACCCTCGCGCGACCTCACCCGT-GGGGTGAGGGAGCTCCATCT Geranium_crenophilum TCGAACCCTGCACAGCAGAACGACCCGCGAACTCGTTAACAAGCCGCGGGAGGCGGG-CGGCGCATGCGCC-CCCGCAGCCCGATGTCGGGGGCTTGGGCGACGCCC-ACGCTGCCCGGCAAAAAA-CGTACCCCCGGCGCGGTCCGCGCCAAGGAATCGAAACGAAGCAACGTGCGCAGTCTTCCCCGTCCGCGGGGAC-CGGGCTGCAA-CACGGACTTCCAATGTATAC---TAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGCCTGCCTGGGCGTCACGC---GCTCCGTCGCCCCGCAACCCCTAACCCCG-AAACGGGC-AGGGTCCTTGTGGTGCGGACATTGGTCTCCCGTGAGCTCTTGCGCTCGCGGCTGGCCTAAATTCGAGTCCCGGGCGCTCTGTT-TGCGGCCGACGGTGGTTGAGAAGCCCTCGAAAATGCGCTGCTGCATTGCTGCCCGACGT-GGACCACGTGACCCTCGCGCGACCTCACCCCT-GGGGTGAGGGAGCTCCATCT Geranium_dissectum TCGAACCCTGCACAGCAGAACGACCCGCGAACTCGTTAACAAGCCGCGGGAGGCGGG-CGGCGCATGCGCC-CCCGCAGCCCGATGCCGGGGGCTTGGGCCACGCCC-ACGCTGCCCGGCAAAAAA-CGTACCCCCGGCGCGGTCTGCGCCAAGGAATCGAAACGAAGCGACGTGCGCAGTCCTCCCCGTCCGCGGGGAT-CGGACTGCAA-CACGGACTTCCAATGTATAC---TAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCTGAGGGCACGCCTGCCTGGGCGTCACGC---GCTCCGTCGCCCCGCAACCCCTAGCCCCG-AAACGGGC-AGGGTGCTTGTGGCGCGGAAATTGGTCTCCCGTGAGCCTTTGCGCTCGCGGCTGGCCTAAAATAGAGTCCCGGGCGCTCTGTC-TGCGGCCGACGGTGGTTGAGAAGCCCTCGAAAATGCGCCGCTGCATTGCTGCCCGAAGT-GGACCACGTGACCCTTGCGCGACCTTGCCCTTGGGGGTGAGGGAGCTCCATCT Geranium_palmatum TCGAACCCTGCACAGCAGAACGACCCGCGAACTCGTAATCTAACTGCGGGAGACGG--TGGTGCTCGCACCATCCGCGACCCGATGTCGGGGGCAATGGCGCCAGCCTGCGCTCCCCGACAAACAA-CGTACCCCCGGCGCGGTCCGCGCCAAGGAACCGAATTGAAGCAACGTGCGTCGC{AG}CGCCCCGTCTGCGGG-ATGCGTGCGTCCG-CGCGGTCTTCCAATGTATAC---TAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGCCTGCCTGGGCGTCACGC---GCTCCGTCGCCCCGCAACCCCAAACCCCG-AAACGGGCCAGGGATCAAGCGGTGCGGAGATTGGT{CT}TCCCGTGGG{CT}GA--GAGCTCGCGGCTGGCCTAAAATCGAGTCCCGGGCGCTCTGTTATGCGGCCGACGGTGGTTGAGAAGCCCTCGGAAATGTGCCGATGACAGGTCGCTC-ACTG{CT}GGACCACACGACCCTTGCGCGACTTCTCCTCTCGAGGAGGATGAGCTCTTACT Geranium_sintenisii_1 TCGAACCCTGCACAGCAGAACGACCCGCGAACTCGTTAACAAGCCGCGGGAGGCGGG-CGGCGCA{CT}GCGCC-CCCGCAGCCCGATGTCGGGGGCTTGGGCGACGCCC-AAGCTGCCCGGCAAAAAA-CGTACCCCCGGCGCGGTCCGCGCCAAGGAATCGAAACGAAGCAACGTGCGCAGTCCTCCCCGTCCGCGGGGAC-CGGACTGCAA-CACGGACTTCCAATGTATAC---TAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGCCTGCCTGGGCGTCACGC---GCTCCGTCGCCCC{CG}CAACCCCTAACCCCG-AAACGGGC-AGGGTGCTTGTGGTGCGGACATTGGTCTCCCGTGAGCTCTTGCGCTCGCGGCTGGCCTAAAATCGAGTCCCGGGCGCTCTGTT-TGCGGCCGACGGTGGTTGAGAAGCCCTCGAAAATGCGCCGCTGCATTGCTGCCCGACGT-GGACCACGTGACCCTCGCGC{AG}ACCTCACCC{AC}T-G{AG}GGTGAGGGAGCTCCATCT Geranium_sintenisii_2 TCGAACCCTGCACAGCAGAACGACCCGCGAACTCGTTAACAAGCCGCGGGAGGCGGG-CGGCGCA{CT}GCGCC-CCCGCAGCCCGATGTCGGGGGCTTGGGCGACGCCC-AAGCTGCCCGGCAAAAAA-CGTACCCCCGGCGCGGTCCGCGCCAAGGAATCGAAACGAAGCAACGTGCGCAGTCCTCCCCGTCCGCGGGGAC-CGGACTGCAA-CACGGACTTCCAATGTATAC---TAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGCCTGCCTGGGCGTCACGC---GCTCCGTCGCCCC{CG}CAACCCCTAACCCCG-AAACGGGC-AGGGTGCTTGTGGTGCGGACATTGGTCTCCCGTGAGCTCTTGCGCTCGCGGCTGGCCTAAAATCGAGTCCCGGGCGCTCTGTT-TGCGGCCGACGGTGGTTGAGAAGCCCTCGAAAATGCGCCGCTGCATTGCTGCCCGACGT-GGACCACGTGACCCTCGCGC{AG}ACCTCACCC{AC}T-G{AG}GGTGAGGGAGCTCCATCT ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = Dissecta_nrITS) = N: 1-638; CODONPOSSET CodonPositions (CHARACTERS = Dissecta_nrITS) = N: 1-638; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1405] TITLE Dissecta_trnLF; LINK TAXA = Taxa1; DIMENSIONS NCHAR=442; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Geranium_asphodeloides_1 AACAAAGTCTCCTTCAACTCACTTCCCTAACTCTTTGCTGCCTTTCCATTTTGAAAGGGTTTCCAAA-TTTGTTATCTTTCTCATTTCTTCT-CTTTAATTTTCCTTTTTTAACAAAATAAAGTACCCAATAGATCTTTTTTTTCCTCTTATCACAGGTCGGTCTTGCGATATATATGACACACGTACAAAGCGAATAGCCCAGGAACCCTCATGTGATTTGTTGAAGGATTCAGAATCCATATTTATACATTACGCGTTTTGTACAAAGTCTGCTTTTTTTTAAGAATCTAAGAAATGCGAGGCGTGGAAAAGACTAAAAATACCTTGTTTCGTCATTTTTTTGAATTGACATAAACTCAAGTCATCTTATAAAATAAGGGATGATGCGTTGGAAATG---GTCGGGATAGCTCAGCTGGTAGAGCAGAGGACTGAAAATC Geranium_asphodeloides_2 AACAAAGTCTCCTTCAACTCACTTCCCTAACTCTTTGCTGCCTTTCCATTTTGAAAGGGTTTCCAAA-TTTGTTATCTTTCTCATTTCTTCT-CTTTAATTTTCCTTTTTTAACAAAATAAAGTACCCAATAGATCTTTTTTTTCCTCTTATCACAGGTCGGTCTTGCGATATATATGACACACGTACAAAGCGAATAGCCCAGGAACCCTCATGTGATTTGTTGAAGGATTCAGAATCCATATTTATACATTACGCGTTTTGTACAAAGTCTGCTTTTTTTTAAGAATCTAAGAAATGCGAGGCGTGGAAAAGACTAAAAATACCTTGTTTCGTCATTTTTTTGAATTGACATAAACTCAAGTCATCTTATAAAATAAGGGATGATGCGTTGGAAATG---GTCGGGATAGCTCAGCTGGTAGAGCAGAGGACTGAAAATC Geranium_crenophilum AACAAAGTCTCCTTCAACTCACTTCCCTAACTCTTTGCTGCCTTTCCATTTTGAAAGGGTTTCCAAA-TTTGTTATCTTTCTCATTTCTTCT-CTTTAATTTTCCTTTTTTAACAAAATAAAGTACCCAATAGATCTTTTTTTTCCTCTTATCACAGGTCGGTCTTGCGATATATATGACACACGTACAAAGCGAATAGCCCAGGAACCCTCATGTGATTTGTTGAAGGATTCAGAATCCATATTTATACATTACGCGTTTTGTACAAAGTCTGCTTTTTTTTAAGAATCTAAGAAATGCGAGGCGTGGAAAAGACTAAAAATACCTTGTTTCGTCATTTTTTTGAATTGACATAAACTCAAGTCATCTTATAAAATAAGGGATGATGCGTTGGAAATG---GTCGGGATAGCTCAGCTGGTAGAGCAGAGGACTGAAAATC Geranium_dissectum_1 AACAAAGTCTCCTTCAACTCCCTTCCCTAACTCTTTGCTGCCTTTCCATTTTGAAAGGGTTTCCAAA-TTTGTTATCTTTCTCATT------------ATTTTCCTTTTTTCACAAAA-AAAGTACCCAATAGATCTTTTTTTTCCTCTTATCACAGGTCGGTCTTGCGATATATATGACACACGTACAAAGCGGATAGCCCAGGAACCCTCATGTGATTTGTTGAAGGATTCAGAATCCATATTTATACATTACGCGTTTTGTACAAAGTCTGCTTTTTTTTAAGAATCTAAGAAATGCGAGGCGTGGAAAAGACTAAAAATACCTTGTTTCGTCATTTTTTTGAATTGACATAAACTCAAGTTATCTAATAAAATAAGGGATGATGCGTTGGAAATG---GTCGGGATAGCTCAGCTGGTAGAGCAGAGGACTGAAAATC Geranium_dissectum_2 AACAAAGTCTCCTTCAACTCCCTTCCCTAACTCTTTGCTGCCTTTCCATTTTGAAAGGGTTTCCAAA-TTTGTTATCTTTCTCATT------------ATTTTCCTTTTTTCACAAAA-AAAGTACCCAATAGATCTTTTTTTTCCTCTTATCACAGGTCGGTCTTGCGATATATATGACACACGTACAAAGCGGATAGCCCAGGAACCCTCATGTGATTTGTTGAAGGATTCAGAATCCATATTTATACATTACGCGTTTTGTACAAAGTCTGCTTTTTTTTAAGAATCTAAGAAATGCGAGGCGTGGAAAAGACTAAAAATACCTTGTTTCGTCATTTTTTTGAATTGACATAAACTCAAGTTATCTAATAAAATAAGGGATGATGCGTTGGAAATG---GTCGGGATAGCTCAGCTGGTAGAGCAGAGGACTGAAAATC Geranium_palmatum AACAAAGTATCCTTCGATTCCCTTCCCGAACTCTTTGCTGCTTGTCAATTTTAAAGAGGTTTAAAAAAATTGTTATCTTTCTTATTTCTTCTTCTT---TTTTCCTTTTT-AACAAAAAAAAGTACCCAATGGACCC-TTTTTGCCTCTTATCACAGG----TCTTGCGGTATATATGACACACGTACAAAGGGGGTGGACCAGGAGCCCTCATGTGATTTGTTGAAGGATTCAGAATACATATTATTACATTACGCCTTTTGTATAAAGTCCTCTTTGTTTTAAGGATCTAAGAAATGCGGGGCGTCAAAAAGACTGAAAATATTTT-TTTCGTCATTTT----AATTGACAGAAACTCAAGTCAGCTAATAAAATAAGGGATGATGCGTTGGAAATG---GTCGGGATAGCTCAGCTGGTAGAGCAGAGGACTGAAAATC Geranium_sintenisii_1 AACAAAGTCTCCTTCAACTCACTTCCCTAACTCTTTGCTGCCTTTCCATTTTGAAAGGGTTTCCAAA-TTTGTTATCTTTCTCATTTCTTCT-CTTTAATTTTCCTTTTTTAACAAAA-AAAGTACCCAATAGATCTTTTTTTTCCTCTTATCACAGGTCGGTCTTGCGATATATATGATACACGTACAAAGCGAATAGCCCAGGAACCCTCATGTGATTTGTTGAAGGATTCAGAATCCATATTTATACATTATGCGTTTTGTACAAAGTCTGCTTTTTTTTAAGAATCTAAGAAATGCGAGGCGTGGAAAAGACTAAAAATACCTTGTTTCGTCATTTTTTTGAATTGACATAAACTCAAGTCATCTTATAAAATAAGGGATGATGCGTTGGAAATG---GTCGGGATAGCTCAGCTGGTAGAGCAGAGGACTGAAAATC Geranium_sintenisii_2 AACAAAGTCTCCTTCAACTCACTTCCCTAACTCTTTGCTGCCTTTCCATTTTGAAAGGGTTTCCAAA-TTTGTTATCTTTCTCATTTCTTCT-CTTTAATTTTCCTTTTTTAACAAAA-AAAGTACCCAATAGATCTTTTTTTTCCTCTTATCACAGGTCGGTCTTGCGATATATATGATACACGTACAAAGCGAATAGCCCAGGAACCCTCATGTGATTTGTTGAAGGATTCAGAATCCATATTTATACATTACGCGTTTTGTACAAAGTCTGCTTTTTTTTAAGAATCTAAGAAATGCGAGGCGTGGAAAAGACTAAAAATACCTTGTTTCGTCATTTTTTTGAATTGACATAAACTCAAGTCATCTTATAAAATAAGGGATGATGCGTTGGAAATG---GTCGGGATAGCTCAGCTGGTAGAGCAGAGGACTGAAAATC ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = Dissecta_trnLF) = N: 1-442; CODONPOSSET CodonPositions (CHARACTERS = Dissecta_trnLF) = N: 1-442; END; BEGIN TREES; TITLE Tb7281; LINK TAXA = Taxa1; TRANSLATE 1 Geranium_asphodeloides_2, 2 Geranium_asphodeloides_1, 3 Geranium_sintenisii_2, 4 Geranium_sintenisii_1, 5 Geranium_dissectum_2, 6 Geranium_dissectum_1, 7 Geranium_crenophilum, 8 Geranium_palmatum; TREE Dissecta_LF = [&R] (8,((7,(4,3),2,1),(6,5))); END; BEGIN TREES; TITLE Tb7282; LINK TAXA = Taxa2; TRANSLATE 1 Geranium_sintenisii_2, 2 Geranium_sintenisii_1, 3 Geranium_asphodeloides_2, 4 Geranium_asphodeloides_1, 5 Geranium_dissectum, 6 Geranium_crenophilum, 7 Geranium_palmatum; TREE Dissecta_ITS = [&R] (7,((6,(4,3),(2,1)),5)); END;