#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 20, 2024; 3:11 GMT TreeBASE (cc) 1994-2008 Study reference: Bonito G.M. 2010. A global meta-analysis of Tuber ITS rDNA sequences: species diversity, host associations and long-distance dispersal. Molecular Ecology, 19(22): 4994-5008. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S13538] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=31; TAXLABELS Tuber_ITCV142_Mexico_2 Tuber_ITCV4026_Mexico Tuber_ITCV4739_Mexico Tuber_ITCV885_Mexico Tuber_beyelerii_JT32597_Oregon_3 Tuber_foetidum_AJ557544_Hungary Tuber_foetidum_JT9769_Nepal Tuber_lauryi_JT26987_Oregon_13 Tuber_linsdalei_L63_Type_2 Tuber_maculatum_AJ557519_2 Tuber_multimaculatum_A200_Spain_Paratype Tuber_rapaeodorum_AJ557522_Hungary_42 Tuber_sancarloensis_Type_ITCV181_Mexico_7 Tuber_setatus_Type_ITCV180_Mexico_3 Tuber_shearii_JT12498_North_Carolina Tuber_sp._ex._132b_Carya_Georgia_3 Tuber_sp._ex._Epipactis_J8_New_York_3 Tuber_sp._ex._Epipactis_helleborine_California_7 Tuber_sp._ex._Epipactis_helleborine_California_AY634172 Tuber_sp._ex._Epipactis_helleborine_California_AY634177 Tuber_sp._ex._Epipactis_helleborine_Japan_2_AB428786 Tuber_sp._ex._Populus_Germany_5_AJ510273 Tuber_sp._ex._Populus_tremula_Austria_2_EF644167 Tuber_sp._ex._Quercus_Missouri_2_EU202710 Tuber_sp._ex._Quercus_Missouri_3_EU202706 Tuber_sp._ex._Quercus_garryana_Oregon_AY969006 Tuber_sp._ex._Quercus_robur_Hungary_3_DQ355246 Tuber_sp._ex._Salix_alba_Neatherlands_4_AJ920009 Tuber_sp._ex._Salix_alba_Neatherlands_AJ920011 Tuber_sp._ex._clone_Alaska_2_EU2922221 Tuber_whetstonense_JT25783_Oregon_Paratype_10 ; END; BEGIN TAXA; TITLE Taxa2; DIMENSIONS NTAX=52; TAXLABELS Tuber_GB298_Italy Tuber_JT19301_Quercus_Mexico Tuber_JT22713_Corylus_avellana_Washington Tuber_JT32421_Mexico Tuber_JT32470_Mexico_3 Tuber_JT7347_California Tuber_anniae_JT13209_Washington_Holotype Tuber_anniae_JT22986_Washington_4 Tuber_asa_M1828_Italy Tuber_borchii_31_Italy_4 Tuber_californicum_JT28058_California_5 Tuber_cf_borchii_China Tuber_dfmo0698_North_Carolina Tuber_dryophilum_38_Italy_8 Tuber_latisporum_DQ898185_China_3 Tuber_liui_DQ898182_China Tuber_menseri_JT11661_Oregon_18 Tuber_multimaculatum_A200_Spain_Paratype Tuber_pacificum_EU837241_Oregon_3 Tuber_puberulum_AJ969625_Hungary_4 Tuber_separans_JT7697_Oregon_7 Tuber_shearii_JT9933_Oregon Tuber_sp._anamorph_Austria_7_AY212884 Tuber_sp._ex._Abies_homolepis_Japan_2_AB218133 Tuber_sp._ex._California_2_DQ822837 Tuber_sp._ex._EM_California_AY702816 Tuber_sp._ex._Epipactis_LG10_New_York Tuber_sp._ex._Epipactis_dunensis_California_11_AY634113 Tuber_sp._ex._Epipactis_helleborine_Japan_AB428787 Tuber_sp._ex._Fagus_sylvatica_Denmark_5_AJ969615 Tuber_sp._ex._Larix_decidua_Poland_3_EU931685 Tuber_sp._ex._Larix_decidua_Poland_EU931686 Tuber_sp._ex._Pinus_halepensis_France_AJ410864 Tuber_sp._ex._Pinus_sabiniana_Mexico_3_EU649090 Tuber_sp._ex._Pinus_thunbergii_Japan_AB285533 Tuber_sp._ex._Populus_Quebec_6_EU554690 Tuber_sp._ex._Populus_tremula_Estonia_AJ534705 Tuber_sp._ex._Quercus_Mexico_2_EU563484 Tuber_sp._ex._Quercus_North_Carolina_AY656959 Tuber_sp._ex._Quercus_crispula_Japan_AB218103 Tuber_sp._ex._Quercus_garryana_Oregon_2_FJ348396 Tuber_sp._ex._Quercus_garryana_Oregon_FJ348398 Tuber_sp._ex._Quercus_garryana_Oregon_FJ348402 Tuber_sp._ex._Quercus_garryana_Oregon_FJ348403 Tuber_sp._ex._Quercus_prinus_Maryland_2_FJ008031 Tuber_sp._ex._Salix_alba_Neatherlands_3_AJ920010 Tuber_sp._litter_North_Carolina_2_AY969316 Tuber_sp2_DQ478621_China Tuber_sp3_DQ478624_China Tuber_sp4_DQ478627_China Tuber_sphaerosporum_JT12487_California_2 Tuber_zhongdianense_DQ898186_China ; END; BEGIN TAXA; TITLE Taxa3; DIMENSIONS NTAX=55; TAXLABELS Tuber_JT11325_Quebec Tuber_JT17711_Quercus_Mexico Tuber_JT9559_Oregon Tuber_Missouri_nonumber Tuber_RH493_Iowa Tuber_RH8310775_Iowa Tuber_candidum_AY830856_Oregon_7 Tuber_ferrugineum_AF132506_France Tuber_furfuraceum_FJ176920 Tuber_huidongense_DQ478632_China_2 Tuber_huidongense_DQ478645_China_2 Tuber_liaotongense_DQ478645_China_5 Tuber_luomai_JT17457_Oregon Tuber_lyonii_JT5665_Texas_2 Tuber_malacodermum_32319_Spain Tuber_nitidum_BM105_Spain Tuber_quercicola_AY918957_Oregon Tuber_rufum_AY112894_Italy Tuber_rufum_var_lucidum_AZ2097_Italy Tuber_sp_RH922071_Iowa Tuber_sp._3_Mexico Tuber_sp._China_DQ478675 Tuber_sp._EM_Estonia_AJ893251 Tuber_sp._JT15106_Quebec Tuber_sp._JT1844_Oregon Tuber_sp._TH_Epipactis_HB5_New_York Tuber_sp._ex._Conifer_Oregon_FJ789634 Tuber_sp._ex._Corylus_North_Carolina Tuber_sp._ex._Epipactis_atrorubens_California_2_AY634152 Tuber_sp._ex._Epipactis_helleborine_California_4_AY634169 Tuber_sp._ex._Epipactis_helleborine_California_4_AY634170 Tuber_sp._ex._Epipactis_helleborine_California_AY634153 Tuber_sp._ex._Epipactis_helleborine_Japan_AB428788 Tuber_sp._ex._Oregon_FJ789635 Tuber_sp._ex._Populus_alba_Hungary_3_DQ355253 Tuber_sp._ex._Populus_tremula_Austria_2_EF644166 Tuber_sp._ex._Quercus_California_2_EF559298 Tuber_sp._ex._Quercus_California_2_EF559300 Tuber_sp._ex._Quercus_Missouri_2_EU202705 Tuber_sp._ex._Quercus_Missouri_EU202709 Tuber_sp._ex._Quercus_douglasii_California_DQ974798 Tuber_sp._ex._Quercus_douglasii_California_EF661992 Tuber_sp._ex._Quercus_garryana_Oregon_EU018588 Tuber_sp._ex._Quercus_garryana_Oregon_EU018589 Tuber_sp._ex._Quercus_garryana_Oregon_EU018590 Tuber_sp._ex._Quercus_garryana_Oregon_EU334899 Tuber_sp._ex._Quercus_garryana_Oregon_EU334900 Tuber_sp._ex._Quercus_garryana_Oregon_FJ235159 Tuber_sp._ex._Quercus_garryana_Oregon_FJ348404 Tuber_sp._ex._Salix_caprea_Poland_AY748863 Tuber_sp._ex._angiosperm_Italy_DQ402504 Tuber_sp1_DQ478643_China Tuber_spinoreticulatum_U188_Maryland_isotype Tuber_taiyuanense_DQ478637_China Tuber_texense_JT15162_Texas ; END; BEGIN TAXA; TITLE Taxa4; DIMENSIONS NTAX=93; TAXLABELS Choiromyces_alveolatus_97 Choiromyces_alveolatus_HS2886 Choiromyces_meandriformis_DL_Oregon Choiromyces_meandriformis_RH691_Iowa Dingleya_sp_JT31575_Australia Labyrinthomyces_sp_JT27750_Australia Reddellomyces_sp_JT27724_Australia Reddellomyces_sp_JT6873_Australia Tuber_aestivum_JT30500_Sweden Tuber_anniae_JT13209_Washington_holotype Tuber_anniae_JT22695_Oregon Tuber_asa_M1828_Italy Tuber_bellisporum_nom_prov_JT11679_Oregon_holotype Tuber_bellisporum_nom_prov_JT7270_Oregon_paratype Tuber_beyeleri_JT32597_Oregon Tuber_borchii_GB1_Italy Tuber_borchii_GB14_Italy Tuber_brumale_GB21_Italy Tuber_brumale_GB22_Italy Tuber_californicum_JT28058_California Tuber_canaliculatum_JT28215_New_Jersey Tuber_canaliculatum_OSC59072_West_Virginia Tuber_candidum_AY830856_Oregon Tuber_castellanoi_nom_prov_JT19924_California_paratype Tuber_castellanoi_nom_prov_JT28069_California_holotype Tuber_cf_borchii_China Tuber_dryophilum_GB35_Italy Tuber_dryophilum_GB37_Italy Tuber_excavatum_BM100_Spain Tuber_excavatum_OSC80639_Italy Tuber_ferrugineum_MA2721_Italy Tuber_foetidum_AJ557544_Hungary Tuber_formosanum_FJ176917 Tuber_fulgens_M2435_Italy Tuber_furfuraceum_FJ176920 Tuber_gennadii_BM667_Spain Tuber_gennadii_JT9627_Spain_paratype Tuber_gennadii_M1904_Italy Tuber_gibbosum_JT26632_Washington Tuber_gibbosum_JT30580_Oregon Tuber_huidongense_DQ478632_China Tuber_indicum_A_GB236_China Tuber_indicum_A_GB240_China Tuber_indicum_B_GB237_China Tuber_indicum_B_JT29410_Oregon Tuber_latisporum_DQ898185_China Tuber_lauryi_nom_prov_JT26987_Oregon Tuber_liaotongense_DQ478645_China Tuber_liui_DQ898182_China Tuber_luomai_JT6003_Oregon_Holotype Tuber_lyonii_GA21_Georgia Tuber_lyonii_OSC58244_Texas Tuber_macrosporum_JT13362_Italy Tuber_maculatum_AM406673 Tuber_magnatum_JT19460_Italy Tuber_malacodermum_JT32319_Spain Tuber_melanosporum_GB200_Italy Tuber_menseri_nom_prov_JT11661_Oregon Tuber_mesentericum_CW105_Sweden Tuber_multimaculatum_OSC62169_Spain_paratype Tuber_nitidum_BM105_Spain Tuber_oregonense_nom_prov_GB284_Oregon_holotype Tuber_oregonense_nom_prov_JT27985_Oregon_paratype Tuber_pacificum_EU837241_Oregon Tuber_panniferum_JT12835_Spain Tuber_pseudoexcavatum_CJ408_China Tuber_puberulum_AJ969625_Hungary Tuber_quercicola_AY918957_Oregon Tuber_rapaeodorum_AJ557522_Hungary Tuber_regimontanum_ITCV909_Mexico_holotype Tuber_rufum_GB213_Italy Tuber_sancarloensis_ITCV181_Mexico_holotype Tuber_sancarloensis_nom_prov_ITCV885_Mexico Tuber_separans_JT7697_Oregon Tuber_shearii_JT12498_North_Carolina Tuber_shearii_OSC51052_North_Carolina Tuber_sp_JT28121_Japan Tuber_sp_RH73_Iowa Tuber_sp._ex._Angiosperm_Italy_AJ879679 Tuber_sp._ex._Angiosperm_sp._Italy_AJ879687 Tuber_sp._ex._Cephalanthera_damasonium_France_AY83304 Tuber_sp._ex._Epipactis_microphylla_France_AY286191 Tuber_sp._ex._Epipactis_microphylla_France_AY286194 Tuber_sp._ex._Epipactis_microphylla_Hungary_AM999885 Tuber_sp3_DQ478624_China Tuber_sp4_DQ478627_China Tuber_sphaerosporum_JT12487_Oregon Tuber_sphaerosporum_JT19772_Oregon Tuber_spinoreticulatum_U188_Maryland_isotype Tuber_taiyuanense_DQ478637_China Tuber_texense_JT15162_Texas Tuber_whetstonense_JT25783_Oregon_Paratype Tuber_zhongdianense_DQ898186_China ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M14945] TITLE Fig3_Maculatum; LINK TAXA = Taxa1; DIMENSIONS NCHAR=928; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Tuber_ITCV142_Mexico_2 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????G-CCCCTA-ACCAGGG---CTCTC--------------------------------------------------------------------------------------------------------------------------------TATAAAA---CTCTA----AAC-TTACTGTCTGAGAAGGCCATGTGCCGTAATC-T-TTAAACTTTTTAAAACCTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCA----TGCCTGTTCGAGCGTCACTAACAACCCCA-TCACAAAAGAGTGTGGTTTTGGCAGAAGTGGGTAG--------GGCT-AGC-----AGTGCTGG-C-ACCACTCTGCTGGAATG---AATGGGCCGGAAATGTATACCATGGTCACAGACTTTCAGAGTATTTTGGAAT-GCTAA-ACTAGTTTGT-AGGCTTGGTCAGAA-TCTAGGCCATTTGGACCCCCTATTCTGTGTAAAGCAGTAAATGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAAT-AAGCGGAGGAAAAGAAACCAACAGGGATTGCCCCCAGTAA???????????????????????????????????????????????????????????????????????????????????? Tuber_ITCV4026_Mexico ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????G-CCCTTA-ACAGGGG---CCTACT------------------------------------------------------------------------------------------------------------------------------CTAGAAAA---CTCTA----AAC-TTGCAGTCTGAGAAGGCCATGGGCCATAATC-T-TTACAATTTTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCATAGGGCA----TGCCTGTTCGAGCGTCACTAACAACCCCA-TCAC-AACCAGTGTGGTATTGGCGGAAGTGGATAG--------GGCT-GGC-----TGTGCTGG-C-CCCACTCTGCTAGAATG---AATAGGCCGGAAATGTAGACCATGGTAACAGACTTTCAGAGTATCTCGTCAT-GCTAA-ATTAGTTTGT-AGGC-TGGTCAGAA-TCCAGGCTG-TTGGACCCCC-ATTCTGTGTAAAGCAGT-AATGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAAT-AAGCGGAGGAAAAGAAACCAACAGGGATTGCCCCCAGTAA???????????????????????????????????????????????????????????????????????????????????? Tuber_ITCV4739_Mexico ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TTACTGTCTGAGAAGGCCATGTGCCGTATTC-T-TTAAACTTTTTAAAACCTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAA-AACGCA-CGAAATGCGATAAGTAATGTGAATTGCA-AATTCA-TGAATCATC-AATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCA----TGCCTGTTC-AGCGTCACTAACAACCCCA-TCAC-AAAAAGTGTGGTTTTGGCAAA--TGGGTAG---------GCT-AGC-----AGTGCTGG-C-ACCACTCTGCTGGAATG---AATGGGCCGGAAATGTAA-CCATGGTCACAGACTTTCA-AGTATTTTGGAAT-GCTAA-ACTA?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_ITCV885_Mexico ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????G-CCCTTA-ACAGGGG---CATACT------------------------------------------------------------------------------------------------------------------------------CTAGAAAA---CTCTA----AAC-TTAAAGTCTGAGAAGGCCATGGGCCATAATC-T-TTAAACATTTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCATAGGGCA----TGCCTGTTCGAGCGTCACTAACAACCCCA-TCAC-AACGAGTGTGGTATTGGCAGAAGTGGGTAG--------GGCT-GGC-----TGTGCTGG-C-CCCACTCTGCTAGAATG---AATAGGCCGGAAATGTAGACCATGGTAACAGACTTTCAGAGTATCTCGTGAT-GCTAA-ATTAGTTTGT-AGGC-TGGTCAGAA-TCCAGGCTG-TTGGACCCCC-ATTCTGTGTAAAGCAGT-AATGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAAT-AAGCGGAGGAAAAGAAACCAACAGGGATTG-CCCCAGTAA???????????????????????????????????????????????????????????????????????????????????? Tuber_beyelerii_JT32597_Oregon_3 ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TCATTATTATAATGCGTGGAAATG-CCCCTA-ACAAGGG---CTCTC--------------------------------------------------------------------------------------------------------------------------------TATAAAA---CTCTA----AAC-TTACTGTCTGAGAAGGCCATGTGCCGTAATC-T-TTAAACATTTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCA----TGCCTGTTCGAGCGTCACTAAAAACCTCA-TCAC-AAAGAGTGTGGTATTGGCAGAAGTGGGTAG--------GGCT-AGCAAGGAAGTGCTGG-C-CCCACTCTGCT{AG}GAATG---AATAGGCCGGAAATGTAGACCATGGTAACAGACTTTCAGAGTATCGTCAAAT-GCTAA-ATTAGTTTGT-ATGCTTGGTCAGAA-TCTAGGCCA-TTGGACCCCC-ATTCTGTATAAAGCAGT-AATGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAAT-AAGCGGA????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_foetidum_AJ557544_Hungary ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????T-CAATATTTGGG-GTG---CTTG-ACACTGG---CTCCCAATA-AAACCCATCCATGAGTACTC-TGCCATGTTGCTTCCCCAGGCCAGTGGCCACT-GCTGCCAGCCAGGCCGTTATTCGGTCACTTGGTTG------------AGGTGCCTGGGGAAGGGCCAATTAGTAAA---CTTTACATTAAC-TTACTGTCTGAGAAGGCCATGTGCCGTAATC-T-TTAAACATGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCA----TGCCTGTTCGAGCGTCACTAAAACC-AGA-TCAC-CAAGAGTGTGGTATTGGCAGAAGTGGGTGG--------GACT-ATA-----AGGGACCCTT--CCACTCTGCTGGAATG---AATAGGCTGGAAAAGTAGATCATAGCAACAGACTTTCAGAGTATTTTGAAAT-GCTAA-ATTAGTTTG--AAGC-TGATCGGAA-CCCAGGCCA-TTAGACCCCC-ATCCTGTGTAAAGCAGT-AAGG????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_foetidum_JT9769_Nepal ???????????????????????????????????????????????????????????????????????????????AGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATTATAAGGCGTGGAAAGG-CCCCTGTGACCGTC---CTCACA----------------------------------------------------------------------------------------------------------------------AGGGCCTAATAGAAAA---CTCTA----AAC-TTACTGTCTGAGAAGGCCACGTGCCGTAATC-T-TTAAACATTTTAAAACCTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCA----TGCCTGTTCGAGCGTCACTAACAACCCCA-TCAC-AATGAGTGTGGTATTGGCAGAAGTGGGTAG--------GGCT-AGC-----ATTGCTGG-C-CCCACTCTGCTGGAATG---AATAGGCCGGAAATGTAGACCATGGTAACAAACTTTCAGAGTATTTTAAGAT-GCTAA-ATTAGTTTGT-AGGC-TGGTCAGAA-TCCAGGCCA-TTGGACCCCC-ATTCTGTGTAAAGCAGT-AATGTT??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_lauryi_JT26987_Oregon_13 ?????????????????????????????????????????????????????????????????????????????????????????GTATCAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAT--AAATATATGGGA----TGCTCA-ATATGAG---TTCTCAACA-AAACACTTTCATGTGTATCC-TTCCATGTTGCTTCCTCAGGCCAGTAGCCATT-GCTACCAGCCAGGCCGATCTTCGGTCACTAGGTTG------------AGGTGCCTGGGGAAGGGTCAATCATGAAA---CTTTACATTGAC-TTATTGTCTGACAAGGCCATGTGCCATTATA-T-TTAAATATTTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCTTTGGTATTCCTTAGGGCA----TGCCTGTTCGAGCGTCACTAACAACC-AA-TCAC-CTTATGTGTGGTATTGGCAGATGTGGGTTGAGTACAA-AGCTTAGC-----AGTGATACTCTCCCACACTGTTGGAATG---AATAGGCTAGAAAAGTAGATCATAGCAACAGACTTTCAGAGTATTTTGAAAT-GCTAA-ATTAGTTTG--AAGC-TGGTCAGAA-TCTAGGCCA-TTTGACCCCC-ATTCTGTGTAGAGCAGT-AAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAAT-AAGCGGAGGAAAAGAAACCAACAGGGATTG-CCTTAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTAACGCCT-CTGGTGTTCGAGTTGTAATTTGGAGAGGCATCTTCCGGA Tuber_linsdalei_L63_Type_2 AGGCCTTCGGAGCGCTCGATGGAGGTCGGCAACGACCACCGCCAGGTGCAAAGTTGGTCAAACTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATTATAATGCGTGGAAATG-CCCCTA-ATAAGGG---CTCTCATGA--------------------------------------------------------------------------------------------------------------------------------AAA---CTCTA----AAC-CTACAGTCTGAGAAGGCCATGTGCCGTAAAC-T-TTAAACATTTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACG{CT}ACAT{CT}GCGCCCTTTGGTATTCCATAGGGCA----TGCCTGTTCGAGCGTCACTAACAACCCCA-TCACAAAGTAGTGTGGTATTGGCAGAAGTGGGTAG--------GGGTAAGC-----AGTGCTGC-C-TCCACTCTGCTGGAATA---AATAGGCCGGAAATGTAGACCATGATAACAAACTTTCAGAGTATCGTCATAT-GCTAA-ATTAGTTTGG-AAGC-TGGTCAGAA-TCCAGGCCA-TTGGACCCCC-ATCCTGTGTAAAGCAGT-AATGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAAT-AAGCGGAGGAAAAGAAACCAACAGGGATTG-CC{CT}{CT}AGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAACCTGGTACCTCTG????????????????????????????????????? Tuber_maculatum_AJ557519_2 ????????????????????????????????????????????????????????????????????????????????????????????????GGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAC--CAATATCTGGGCATG-CAAAAG-ACACA{GT}G---CTCCCGATA-AAACACATTTATGCGTATCC-TCCCATGTTGCTTCCCCAGGCCAGTGGCCACT-GCTGCCAGTCAGGCCGTTATTCGGTTACTTGGTTG------------AGGTGCCTGGGGAAGGGCCAATTATCAAA---CTTTACATTAAC-TTACTGTCTGAGAAGGCCATGTGCCGTAATA-T-TTAAACATGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCA----TGCCTGTTCGAGCGTCGCTAAAACCCAGA-TCAC-CTAGAGTGTGGTATTGGCAGAAGTGGATAT--------GGCT-ACTA--TCAGGGCTGT-T-CCCACTCTGCTGGAATG---AATAGGCTGGAAAAGTAGATCATAGCAACAGACTTTCAGAGTGTTTTGAAAT-GCTAA-ATTAGTTTG--AAGC-TGATCGGAA-CCCAGGCCA-CTTGACCCCC-ATCCTGCGTGAAGCAGT-AAGGTTGACCTCGGATCAGGTAGG????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_multimaculatum_A200_Spain_Paratype ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CATTAATATATT---TGGGA-TA-CCCTTA---CAGGTTCCCTATCCTTTAAACCTCTCTGTGTACCAATCCATGTTGCTTTCCTCAGATCAGCAGCCACTGCTGCCTGTATAGTTCACAATGGGCTAATATACAGAGGTATCTGGGGGAGGGTCTTCTTATAACTC-----------ATAT---TGTT----AACCATGCAGTCTGAGTTGGCTGAATACCATACATATCTTGAATAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTCAGGGCA----TGCCTGTTCGAGCGTCACTACAAACCTCACTCAC-AACAATTGTGGTAATGGTAGGAGTGGATTATTAT----GACAAAGTC----AC--CAGT-C--ACACCCTACCGAAATGC---ATTGGGCGGACTTTTAGGCTTAGTGAAGAGACTT--AGTACATGTTCAAAGAATATATAATAGTCTCA--TGCTAGGTTAGGT--CCTGCCTGCCTGGACCTCC-ATCTGGTTTATAT-ACT--GGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAAT-AAGCCGGAGGAA?GAA???????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_rapaeodorum_AJ557522_Hungary_42 ?AGCTATCATCCACGCGTGGAGCTCTCCATAGGTCGACCTGCAGGCGGCCGCACTAGTGATTCTTGGTCCATTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAC--CAATATCTGGG-ATG-CCAAAG-ACACAGG---CTCCCGATA-AAACACATTTATGCGTATCC-TCCCATGTTGCTTTCCCAGGCCAGCGGCCACT-GCTGCCAGCCATGCCGTTTTTCGGTTACATGGTTG------------AGGTGCTTGGGGAAGGGCTAATTATCAAA---CTTTACTTCACC-TTATTGTCTGAGAAGGCCATGTGCCGTAATC-T-TTAAACATGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCA----TGCCTGTTCGAGCGTCGCAAAAACCCAGA-TCAC-CTAGAGTGTGGTATTGGCAGAAGTGGCCGG--------GGCT-ATC-----AGCGCTGC-T-GCCACTCTGCTGGAATG---AATAGGCTGGAAAAGTAGATCATAGCAACAGACTTTCACAGTATTTTGAAAT-GCTAA-ATTAGTTTG--AAGC-TGATCGGAA-CCTAAGCCA-TTTGACCCCC-ATCCTGCGTAAAGCAGT-AAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAAT-AAGCGGAGGAAAAGAAACCAACAGGGATTG-CCTTAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTAACGCCT-CTGGTGTTCGAGTTGTAATTTGGAGAGGCATCTTCCGGA Tuber_sancarloensis_Type_ITCV181_Mexico_7 ???????????????????????????????????????????????????????????????????????TTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATTATAATGCGTGAAAATG-CCCCTA-ACACGGG---CATACT------------------------------------------------------------------------------------------------------------------------------CTAGAAAA---CTCTA----AAC-TTACAGTCTGAGAAGGCCATGGGCCATAATC-T-TTAAACATTTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCATAGGGCA----TGCCTGTTCGAGCGTCACTAACAACCCCA-TCAC-AAAGAGTGTGGTATTGGCAGAAGTGGGTAG--------GGCT-GGC-----AGTGTTGG-C-CCCACTCTGCTGGAATG---AATAGGCCGGAAATGTAGACCATGATAACAGACTTTCAGAGTATCCCCTGAT-GCTAA-ATTAGTTTGT-AGGC-TGGTCAGAA-TCCAGGCCG-TTGGACCCCC-ATTCTGTGTAAAGCAGT-AATGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAAT-AAGCGGAGGAAAAGAAACCAACAGGGATTGCCCCCAGTAA???????????????????????????????????????????????????????????????????????????????????? Tuber_setatus_Type_ITCV180_Mexico_3 ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GCCCCTA-ACCAGGG---CTCTC--------------------------------------------------------------------------------------------------------------------------------TATAAAA---CTCTA----AAC-TTACTGTCTGAGAAGGCCATGTGCCGTAATC-T-TTAAACTTTTTAAAACCTTCAACAACGGATCTCTTGGCTCTCGCTTCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCA----TGCCTGTTCGAGCGTCACTAACAACCCAA-TCACCAAAGAGTGTGGTATTGGCAGAAGTGGGTAG--------GGCT-AGC-----AGTGCTGG-C-TCCACTCTGCTGGAATG---AATAGGCCGGAAATGTAGACCATGGTAACAGACTTTCAGAGTATTTTGGAAT-GCTAA-ATTAGTTTGT-AGGCTTGGTCAGAA-TCTAGGCCATTTGGACCCCC-ATTCTGCATAGAGCAGTAAATGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAAT-AAGCGGAGGAAAAGAAACCAACAGGGATTG-CCCCAGTAA???????????????????????????????????????????????????????????????????????????????????? Tuber_shearii_JT12498_North_Carolina ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????T?TGGG---TTCCCAAAACAAACACATTCATGTGTATCC-TCCCATGTTGCTTTCCCAAGCCAGTGGCCACT-GCTACCAGCCAGTCCATTATTTGGTCTTCAGGTTG------------AGGTGCTTGGGAAAGGGTCATTTAACAAA---CTTTATATTAAC-CTATTGTCTGATGAGGCTATATGCCATAATA-T-GTAAACATGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCA----TGCCTGTTCGAGCGTCACAAACAATCTGA-TCAC-CATATGTGTGGTATTGGCAGAAGTGGATAT--------AGTC-ATG-----AGTTTCAGAC-TCCACTCCGCTGGAATA---AATAGGCTGGAAAAGTAGATCATAGCAACAGACTTTCAGAGTATTTTGGAAT-ACTAA-ATTAGTTTA--GAGC-AGATCAGAA-TCCAGGCCA-GTTGACCCCC-ATCCTGTGTAATGCAGT-AAGGTTG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_sp._ex._132b_Carya_Georgia_3 ???????????????????????????????????????????????????????????????????????????????????????????????AGGTTTC?GTAGGTGAAC?TGCGGAAGGATCATTA{AT}CACAATATGTGGGA----TGCTCA-ATATGAG---CTCCCAAAATAAACACATTCATGTGTATCC-TTCCATGTTGCTTTCCCAGGCCAGTGGCCACT-GCCACCAGCCAGTCCATTATTTGGTCTTCAGGTTG------------AGGTGCTTGGGAAAGGGCCAATTATCAAACTTCTTTATATTAAC-CTATTGTCTGATGAGGCTATATGCCGTAATA-T-GTAAATATGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCA----TGCCTGTTCGAGCGTCATAAACAATCTGA-TCAC-CATATGTGTGGTATTGGCAGAAGTGGATAT--------AGTC-AAG-----AGTATTAGAC-TCCACTCTGCTGGAATG---AATAGGCTGGAAAAGTAGATCATGGCAATAGACTTTCAGAGTATTTTAGAAT-GCTAA-ATTAGTTTG--GAGC-TGATCAGAA-CCCAGGCCA-GTTGACCCTC-ATCCTGTGTAAAGCAGT-AAGAATGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAAT-AAGCGGAGGAAAAGAAACCAACAGGGATTG-CCTTAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGACATCT-CTGATGTTCGAGTTGTAATTTGGAGAGACATCTTCTGGA Tuber_sp._ex._Epipactis_J8_New_York_3 ??????????????????????????????????????????????????????????????????????????????????????????????????GGTTCGTAGGTGA-CCTGCGGAAGGATCATTAC{AG}A-AATATCTGGGA----TGCTCA-ATATGAG---TTCCCAACA-AAACACATTTATGCGTATTC-TTCCGTG-TGTTTCCCCAGGCCAATGGCCAGTATGTACCATCTTGGCCCATAACAGGGTATCCAGCTGGTGTACAGCCGCGTGTGTCTGGGAAGGCCCAAATTGGCAAAA--CTTTATGTTAAC-TTACTGTCTGACAAGGCCATGTGCCCCTGTATT-TTAAATATTTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCA----TGCCTGTTCGAGCGTCACTAAAAACCCCA-TCAC-ATTATGTGTGGTATTGGCAGAAGTGGGTAC------------------------------T-CCCACCCTGCTGGAATG---AATAGGCTGGAAAAGTAGATCGTAGCAACAGACTTTCAGAGTGTTTTGAAAT-GCTAA-ATTAGTTTG--AAGC-TGGTCGGAACCCCAGGCCA-TTTGACCCCC-ATTCTGCACAAAGCAGT-AAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG{CG}CGGAGG??????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_sp._ex._Epipactis_helleborine_California_7 ?????????????????????????????????????????????????????????????????????CATTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATTATAATGCGTGGAAATG-CCCCTA-ACAAGGG---CTGTCT------------------------------------------------------------------------------------------------------------------------------CTATAAAA---CTCTA----AAC-TTACAGTCTGAGAAGGCCATGTGCCATAATC-T-TTAAACTTTTTAAAACCTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCA----TGCCTGTTCGAGCGTCACTAACAACCCCA-TCACAAAAGAGTGTGGTATTGGCAGAAGTGGGTAG--------GGCT-AGC-----AGTGCTGG-C-CCCACTCTGCTGGAATG---AATAGGCCGGAAATGTAGACCATGGTAACAGACTTTCAGAGTATTTTGCAAT-GCTAA-ATTAGTTTGT-AGGCTTGGTCAGAA-TCTAGGCTATTTGGACCCCC-ATTCTGCGTAAAGCAGTAAATGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAAT-AAGCGGAGGAAAAGAAACCAACAGGGATTG-CCTTAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGACACCT-TTGGTGTTCGAGTTGTAATTTGGAGAGGCATCTTCTGGA Tuber_sp._ex._Epipactis_helleborine_California_AY634172 ????????????????????????????????????????????????????????????????????????TAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAT--CAATATCTGGGA----TGCTCA-ATATGAG---CTCCCAACA-AAACACATCCATGCGTATCC-TTCCATGTTGCTTTCCCAGGCCTGTGGCCACT-GCTACCAGCCCGGCCATTATTTGGTTATCAGGTTG------------AGGTGCCTGGGGAAGGGTCAATCATGAAA---CTTTACATTACA-TTACCGTCTGAAAAGGCCATGTGCCGTTATA-T-ATAAACATTTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCA----TGCCTGTTCGAGCGTCACTAACAACCTGA-TCAC-CTCATGTGTGGTATTGGCAGAAGTGGGTAGAGCATAGTTGCT-AGT-----AG-------T-CCCACCCTGCTGGAATG---AATAGGCTGGAAAAGTAGATCATAGCAACAGACTTTCAGAGTATTTTGAAAT-GCTAA-ATTAGTTTG--GAGC-TGGTCGGAA-CCCAGGCCA-TTTGACCCCC-ATTCTGTGTAAAGCAGT-AAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAAT-AG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_sp._ex._Epipactis_helleborine_California_AY634177 ??????????????????????????????????????????????????????????????????????ATTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATTATAATGCGTGGATAGGCCCCCTA-ACAGGGG---CTCCC--------------------------------------------------------------------------------------------------------------------------------TAGAAAA---CTCTA----AAC-TTACTGTCTGAGAAGGCCATGTGCCGTAATC-T-TTTAACTTTTTAAAACCTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCA----TGCCTGTTCGAGCGTCACTAAAAGACCCA-TCACACAAGAGTGTGGTATTGGCAGAAGTGGGTAG--------GGCT-GGC-----AGTGCTGG-C-CCCACTCTGCTGGAATG---AATAGGCCGGAAATGTGGACCACGGTAACAGACTTTCAGAGTATTTTGAAAT-GCTAGTTTTAGTTTGT-AGGCTTGGTCAGAA-TCTAGGCCA-TTGGACCCCC-ATTCTGTGTAAAGCAGT-AATGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAAT-AAGCGGAGGA?????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_sp._ex._Epipactis_helleborine_Japan_2_AB428786 ???????????????????????????????????????????????????????????????????????????????????????????????????????GTAGGTGAACCTGCGGAAGGATCATTAT--CAATATTTGGGG----TGCTTG-ACACTGG---CTCCCAATA-AAAC{AC}CATCCATGAGTACTC-TGCCATGTTGCTTCCCCAGGCCAGTGGCCACT-GCTGCCAGCCAGGCC{AG}TTATTCGGTCACTTGGTTG------------AGGTGCCTGGG{CG}AAGGGCCAATTAGTAAA---CTTTACATTAAC-TTACTGTCTGAGAAGGCCATGTGCCGTAATC-T-TTAAACATGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCA----TGCCTGTTCGAGCGTCACTAA-AACCAGA-TCAC-CAAGAGTGTGGTATTGGCAGAAGTGGGTGG--------GACT-ATA-----AGGGACCC-T-TCCACTCTGCTGGAATG---AATAGGCTGGAAAAGTAGATCATAGCAACAGACTTTCAGAGTATTTTGAAAT-GCTAA-ATTAGTTTG--AAGC-TGATC{AG}GAA-CCCAGGCCA-TTAGACCCCC-ATCCTGTGTAAAGCAGT-AAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAAT-AAGCGGAGGAAAAGAAACCAACAGGGATTG-CCTTAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGACACCT-CTGGTGTTCGAGTTGTAATTTGGAGAGGCATCTTCAGGA Tuber_sp._ex._Populus_Germany_5_AJ510273 ????????????????????????????????????????????????????????????????????????TAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATTATAATGCGTGGAAAAGCCCCCTT-ACAGGGG---CTCTC--------------------------------------------------------------------------------------------------------------------------------TAGAAAA---CTCTA----AAC-TTACTGTCTGAGAAGGCTACGTGCCATAATC-T-TTAAATATTTTAAAACCTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCA----TGCCTGTTCGAGCGTCACTAACAACCCCA-TCAC-AAAGAGTGTGGTATTGGCAGAAGTGGGTAG--------GGCT-GGC-----ATTGCTGG-T-CCCACTCTGCTGGAATG---AATAGGCCGGAACTGTAGACCATAGTAACAGACTTTCAGAGTATTTTAAGAT-GCTAA-ATCAGTTTGT-ATGC-TGGTCAGAA-TCCATGCCA-TTGGACCCCC-ATACTGTGGAAAGCAGT-AATGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCATA????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_sp._ex._Populus_tremula_Austria_2_EF644167 ????????????????????????????????????????????????????????????????????????????????????????????????????TCCGTAGGTGAACCTGCGGAAGGATCATTATTATAATGCGTGGAAATGCCCCCTA-ACAGGGG---CATACT------------------------------------------------------------------------------------------------------------------------------CTAGAAAA---CTCTA----AAC-TTACAGTCTGAGAAGGCCATGGGCCATAACC-T-TTAAACATTTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCATAGGGCA----TGCCTGTTCGAGCGTCACTAACAACCCCA-TCAC-AAAGAGTGTGGTATTGGCAGAAGTGGGTAG--------GGCT-GGC-----AGTGCTGG-C-CCCACTCTGCTGGAATG---AATAGGCCGGAAATGTAGACCA{GT}GGTGACAGACTTTCAGAGTATCTCGTAAT-GCTAA-ATTAGTTTGT-AGGC-CGGTCAGAA-TCCAGGCTG-{GT}TGGACCCCC-ATT{AC}TGTGTAAAGCAGT-AATGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAAT-A??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_sp._ex._Quercus_Missouri_2_EU202710 ?????????????????????????????????????????????????????????????????????TTAGAGGAAAGTAAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAC--AAATATCTGGGA----TGCTCA-ATATGAG---TTCCCAACA-AAACACATTCATGCGTATCC-TTCCATGTTGCTTCCCCAGGTCAATGGTCAGTAGTTACCGTCTTGGC{CT}CATAACAGGGTATCCAGCTGGTCTACGGCCGCGTGTGCCTGGGAAGGTCCAAATTGGCAAAA--CTTTATATTAACTTTAC{CT}GTCTGACAAGGCCATGTGCCACTGTA-T-TTAAACATTTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCA----TGCCTGTTCGAGCGTCACTAAAAACCCC{AG}-TCAC-ATTAT{GT}TGTGGTATTGGCAGAAGTGGGTAG------------------------------T-CCCACCCTGCTGGAATG---AATAGGCTGGAAAAGTAGATCATAGCAACAGACTTTCAGAGTGTTTTGAAAT-GCTAA-ATTAGTTTG--AAGC-TGGTCGGAACCCCAGGCCA-TTTGACCCCC-ATTCTGCATGAAGCAGT-AAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAAT-AAGCGGAGGAAAAGAAACCAACAGGGATTG-CCTTAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGACGCCT-CCGGTGTTCGAGTTGTAATTTGGAGAGGCATCTTCTGGA Tuber_sp._ex._Quercus_Missouri_3_EU202706 ?????????????????????????????????????????????????????????????????????????AGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATATA-TATATGGGA----TGCTTA-ATATGAG---CTCTCAAAATAAACACATTCATGTGTATAC-TTCCATGTTGCTTTCCCAGGCCAGTGGCCACT-GCCACCAGCCAGTCCATTATTCTGTCTTCAGGTTG------------AGGTGCTTGGGAAAGGG{CT}CAATTATCAAACTTCTTTATATTAAC-CTATTGTCTGATGAGGCTATATGCCGTAATA-T-GTAAATATGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTTTTGGTATTCCTTAGGGCA----TGCCTGTTCGAGCGTCATAAACAATCTGA-TCAC-CATATGTGTGGTATTGGCAGAAGTGGATAT--------AGTC-AAG-----AGTATTGGAC-TCCACTCTGCTGGAATG---AATAGGCTGGAAAAGTAGATCATAGCAATAGACTTTCAGAGTATCTTAGAAT-GCTAA-ATTAGTTTG--GAGC-TGATCAGAA-CCCAGGCCA-GTTGACCCTT-ATCCTGTGTAAAGCAGT-AAGAATG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_sp._ex._Quercus_garryana_Oregon_AY969006 ????????????????????????????????????????????????????????????????????????????????????????????????????????????????TATGCGGA?AGAATTTTAT--AATTCCTCGGAAATG-----CAAATAAGGG---CATACT------------------------------------------------------------------------------------------------------------------------------CTATAAAA---CTCTA----AAC-TTACTGTCTGA?AAGGCCACGTGCCGTAATC-T-TTAAACATTTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCA----TGCCTGTTCTTTTTTCACTAACAACCCCA-TCATACAAGAGTGTGGTATTGGCAGAAGTGGGTAG--------GGCT-AGC-----AGTGCTGG-T-CCCACTCTGCTGGAATG---AATAGGCCGGAAATGCAGACCATGGCAACAAACTTTCAGAGTATTTTGAAAT-GCTAA-ATTAGTTTG--GAGC-TGGTCGGAA-TCCAGGCCA-TTGGACCCCC-ATTCTGTGTAAAGCAGT-AATGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAAT?AAGCGGAGGAAAA??????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_sp._ex._Quercus_robur_Hungary_3_DQ355246 ????????????????????????????????????????????????????????????????????????????????????????????????GGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAT--CAATTTCTGGAAATG-CCCCTA-ACCCGGG---CTCTCAAGA-AAACACATCCATGCGTATTC-TGCCATGTTGCTTCCCCAGGCCAGTGGCCACT-GCCACCAGTCAGGCATCCATAGGGGAGCTAGACTG------------AGGTGCCTGGGGAAGGGTCATCTATTAAA---CTTTACATTAAC-TTACAGTCTGAGAAGGCAATGTGCCGAAATT-A-TCAAATATGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCA----TGCCTGTTCGAGCGTCACTAATAACCTCA-TCAC-CAACTGTGTGGTATTGGCAGAAGTGGGTAG--------GGCT-AGC-----ATTGCTGG-T-CCCACTCTGCTGGAATA---AATAGGCCGGAAATGTAGACCACAGTAACAGACTTTCAGAGTAT-TTGAGAT-ACTAA-ACTAGTTTG--AAGC-TGGTCAGAA-TCCAGGCCA-TTGGACCCCC-ATTCTGTGTAAAGCAGT-AAGGTTGACCTCGGATCAGGTAGGGATACCCGC???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_sp._ex._Salix_alba_Neatherlands_4_AJ920009 ????????????????????????????????????????????????????????????????????????????????????????????????GGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATTATAAGGCGTGGAAATG-CCCCTA-ACAAGGG---CATACT------------------------------------------------------------------------------------------------------------------------------ATATAAAA---CTCTA----AAC-TTACTGTCTGAGAAGGCCATGTGCCGTAATC-T-TTAAACATTTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCA----TGCCTGTTCGAGCGTCACTAACAACCCCA-TCAC-AAAAAGTGTGGTATTGGCAGAAGTGGGTAG--------GGCT-AGC-----GGTGCTGG-C-CCCACTCTGCTGGAATG---AATAGGCCGGAAATGTAGACCATTGTCACAGACTTTCAGAGTATTTTGAAAT-GCTAA-ATTAGTTTGT-AGGCTTGGTTGGAA-TCTAGGCCA-TTCGACCCCT-ATTCTGTGTAAAGCAGT-AATGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAAT-AAGCGGAGGAAAAGAAACCAACAGGGATTG-CCTTAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCGACCTCCGGTGTTCGAGTTGTAATTTGGAGAGGCATCTTCTGGA Tuber_sp._ex._Salix_alba_Neatherlands_AJ920011 ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GGAAGGATCATTATTATAAGGCGTGGAAATG-CCCCTA-ACAAGGG---CATACT------------------------------------------------------------------------------------------------------------------------------ATATAAAA---CTCTA----AAC-TTACTGTCTGAGAAGGCCATGTGCCGTAATC-T-TTAAACATTTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCATGACTGCCTGTTCGAGCGTCACTAACAACCCCA-TCAC-AAAAAGTGTGGTATTGGCAGAAGTGGGTAG--------GGCT-AGC-----AGTGCTGG-C-CCCACTCTGCTGGTATATGTAATAGGCCGGAAATGTAGACCATTGTCACAGACTTTCAGAGTATTTTGAAATCGCTAA-ATTATTGTGTCAGGCTTGGTTGGAATGCCAGGCCA-TTCGACCCCT-ATTCTGTGTAAAGCAGT-AATGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAAT-AAGCGGAGGAAAAGAAACCAACAGGGATTG-CCTTAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCACCCATGCC??????????????????????????????????? Tuber_sp._ex._clone_Alaska_2_EU2922221 ????????????????????????????????????????????????????????????????????????????????????AAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATTATAATGCGTGGAAATG-CCCCTA-ACAAGGG---CATACT------------------------------------------------------------------------------------------------------------------------------CTATAAAA---CTCTA----AAC-TTACAGTCTGAGAAGGCCATGTGCCGTATTC-T-TTAAACCTTTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCA{CT}CGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCA----TGCCTGTTCGAGCGTCACTAACAACCCCA-TCAC-AAATAGTGTGGTATTGGCAGAAGTGGGTAG--------GGCT-AGC-----ACGGTTGG-C-CCCACTCTGCTGGAATG---AATAGGCCGGAAATGTAGACCATGGTAACAGACTTTCAGAGTATTTTCAAAT-GCTAA-ATTAGTTTGT-AGGCCTGGTCAGAA-TCCAGGCCA-TTGGACCCCC-ATTCTGTGTAAAGCAGT-AATGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAAT-AAGCGGAGGAAAAGAAACCAACAGGGATTG-CCTTAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCACCT-CTGGTGCTCGAGTTGTAATTTGGAGAGGCATCTTCTGGA Tuber_whetstonense_JT25783_Oregon_Paratype_10 ??????????????????????????????????????????????????????????????????????????GAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATTATAATGCGTGGAAATG-CCCCTA-ATAAGGG---CATACT------------------------------------------------------------------------------------------------------------------------------CTATAAAA---CTCTA----AAC-TTACTGTCTGAGAAGGCCACGTGCCGTAATC-T-TTAAACATTTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCA----TGCCTGTTCGAGCGTCACTAACAACCCCA-TCATACAAGAGTGTGGTATTGGCAGAAGTGGGTAG--------GGCT-AGC-----AGTGCTGG-T-CCCACTCTGCTGGAATG---AATAGGCCGGAAATGCAGACCATGGCAACAAACTTTCAGAGTATTTTGAAAT-GCTAA-ATTAGTTTG--GAGC-TGGTCAGAA-TCCAGGCCA-TTGGACCCCC-ATTCTGTGTAAAGCAGT-AATGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAAT-AAGCGGAGGAAAAGAAACCAACAGGGATTG-CCTTAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGACACCT-CTGGTGTTCGAGTTGTAATTTGGAGAGGCATCTTCTGGA ; END; BEGIN SETS; CHARSET excluded (CHARACTERS = Fig3_Maculatum) = 1-121 131-136 146-149 155-166 172-179 230-247 265-277 288-299 307-309 315-318 545-548 576-584 592-597 604-608 696-699 802-928; END; BEGIN CODONS; CODONPOSSET * UNTITLED (CHARACTERS = Fig3_Maculatum) = N: 1-928; CODONPOSSET CodonPositions (CHARACTERS = Fig3_Maculatum) = N: 1-928; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M14944] TITLE Fig4_Rufum; LINK TAXA = Taxa3; DIMENSIONS NCHAR=796; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Tuber_JT11325_Quebec ??????????????TGGGATACCAAAGTGTT--CCCTGATTTTAACCCTCTCTGTGTATCAATCCATGTTGCTT-TCCCAGGTATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCTTCCAGGTTG--CTGGAAAAGG-TCCCATAGAAATCT-ATTGATTAAATTGGCTGTCT-GAGTT-GGCCCAGT-GCCAT-ATTC--TTTGA-AAATGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCGCTCATAA-ATA-T--TATGGTA-TTGAT-GGAAGTGAA-CTGTG-G-CAGATG----ATGTG-CAC-TGTTCACCCTATCGAAATGT-ATAGGCA-GGATCATG-AACCTCCA-CAC-TGGAC-TTGGTA-AC-TGTTTTGGAGACATAAATT-AG-TTCAT--TGCGTT-GTTC-TGACCTGGCCTCC-AAG-GACCCCC-ATC??????????????????-?????????????????????????????????????????????? Tuber_JT17711_Quercus_Mexico ????????????????GAATACCAAGGTGTT--CCCTGTTCCCAATCCTCCCTGTGTACCAATCCATGTTGCTT-TCCCAGTTGGTTGGTA---TGAGCTGCGGTTCAACTTTGCCTACTT------------AGCCCTGTCACCTTGAGGCATA-----------------------------------------------------------------------------------------TGCTATGCAGGACCG-CTGGGAAAGG-TTCTACTTAAAGCTGATTATAGAATTTGAATGTCT-GAGAT-GGCTTAGT-GCTAT-GTAC--CTTTAAATAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCACCCCT-TGGT-ATTCCTTG-GGGTATGCCTGTTCGAGCGTCACTACAAA-CCCCATCATAA-ATA-C--TATGGTG-CTGAT-GGAAGTGAA-CTATA-G-CTATCA----ATGCT-CCG-GGTTCACTCCATTGAAATGC-ATAGGCA-GGACAATC-AACCTCTG-CGG-TGGAC-TTAGTA-AT-TGTCTTAAAAACATAAATC-AG-TCATG--TAGTAG-GTTT-TGGCCTGTCCTCT-TTG-GACCTTC-ATCAAGG---ATGAAC-TCTG-GGCTGACCTCGGATCAG-TAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_JT9559_Oregon ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-??????????????????????CAATCAGCTGTCT-GAGTT-GGCCGAGTGGCCAC-ATTC--TTTGA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCTACTCATTA-ATA-T--TATGGTA-CTGAT-GGAAGTGAA-CTCTG-G-CCTCTA----ATATG-CTG-GGATCACCCCGTTGAAATGC-ATAGGCA-GGAAAATC-AACCTTTG-CAA-CTGAC-TTAGTA-AC-TGTTTTCAAAACAAAAACC-AG-TCACT--CGCTAG-GTTC-TAGCCTGGCCTCC-ATG-GACCTCC-ATTCAAG---ATAAAT-TCTG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_Missouri_nonumber CATTATATATATCTA-GGATACCAATCAGGT--TCCCTGACCAATTCCCTTCTGTGTACCAATCCATGTTGCTT-TCCCAGATGCCTCATC-----------CGTACCGGTGGGCCTCCTAGTAG--------GGTGTACTCTGTTTGGGTCCCTGATAGGAAGTCTAATATGTT-----------------------------------------------------TCTACAAGGATA----AGTGATGCAGGCCA--CTGGGAAAGG-TCTAATTTAAACAA-AGTAATTGAATCTGTTCTCT-GAGTA-GGCTGAGT-GCCTT-ATTTTTCTTGA-ATAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGC-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCCTTCATAATTATTTATTATGGTA-TTGAT-GGAAGTGAA-TAATA-G-GTGTTA----ATATA-CTT-ATGTCACTTCATCAAAATAA-ATAGGCA-GGACAATT-GACCCCAG-TGA-TGGAC-TTTGTA-AA-TGTTTTATAGACATAAACC-AG-TCTCT--TGCTAGGGGTG-TATGACTGTCTTC-ATT-GATCTCC-ATCTAAT---ATTGAC-TCTG-GGTTGACCTCGGATCAGGTAGGAA--TACCCGCTGAAC-TTAAGCA Tuber_RH493_Iowa CGTT-----------------------------CCCTGAC{AT}C{AT}{AG}{CT}CCTTC-CTGCGTATCAACCCATGTTGCTT-TCCCAGTTGCCA-------------------------------------------------------------------------------------------------------------------------------------------------------------GTCCTTTCAGGCCG--CTGGGAGAGG-TCCCATAGAAATCT-ATTGATCAAATTGGCTGTCT-GAGTT-GGCCCAGT-GCCAT-ATTC--TTTGA-AAATGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCACCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCGCTCATAA-CCA-T--TATGGTG-TTGAT-GGAAGTGAT-CTGTA-G-CAACCA----CTGCT-TAC-TGTTCACCCCATCGAAATGC-ATAGGCA-GGATAATG-AACCTCCT-CAC-TGGAC-TTGGTA-AC-TGTTTTCGAGACATAAATT-AG-TCCCT--TGTGGT-GTTC-TGGCCTGGCCTTC-AAA-GACCCCC-ATTCAAG---GCGAAT-ACAG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_RH8310775_Iowa CATTATGCATATCTG-GGATACCGGTAAGGT-TCCCGAATCCATCTCCTCACTGTGTACCAATCCATGTTGCTT-TCCCAGGTTCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGGGGAGG-TCCAATCCAACACC-GATGATTGAGTCTGTAGTCT-GAGTA-GGCCCAGT-GCCATGAATT--TTTAA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGC-ATTCCTTG-AGGCATGCCTGTTCGAGCGTCACTACAAA-CCCCCTCATAG-ATATT--TATGGTA-TTGAT-GGAAGTGAA-CTGTGTGTCTATTG----GTGTA-CTC-ATACCACTCCATCGAAATGA-ATAGGCA-GGACAAGT-GGCAACTG-CGA-TGGAC-TTAGTA-AA-TGGTTTTCAGATGTGGACC-AG-TTCTT--TGCTATGTTGT-ACAGCCTGTATCT-ATG-GACTCCC-ATTCAAT---GAGCAC-TTTG-GGTTGACCTCGAATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_candidum_AY830856_Oregon_7 CATTACACATATATG-GGACACTAATGTGGT-CCCTTGACTAAAACCCTCTCTGCGTACCAATCTATGTTGCTT-TCCTAGGTGGTTGGTT---TCAGCTGCCGTCCAACATTGCCTGCTA------------GCTCAGTC-AATCCGAGTTGTTAACTTGGAGTTTGATCTAT-----TTTACTGATGGGTTAAGCTTTAATGGGTCAGCGAGCTTAATTTATA---TCTATCAGGATC----AGCTATGTAGGCCC--CTGGGAAAGG-GTCCAT{CT}GCAAGTG-AATATTTCAATCAGCTGTCT-GAGTC-GGCCTAGT-GCCTT-ATTC--TTTAA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCGCTCATAA-ATG-T--TATGGTA-TTGAT-GGAAGTGAA-CTGTT-G-CAACTA----AAGTG-TGT-GGATCACCCCATCGAAATAC-ATAGGCA-GGACAACA-AACCTCTG-TAG-CTGAC-TTAGTA-AC-TGTTTTCAAGACACAAACC-AG-TCACT--TGCTAG-GTTC-TAGCCTGGCCTCA-TTA-GACCTCC-ATTCAAG---ATAAAT-ACTG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_ferrugineum_AF132506_France CATTATTTGTTTATG-GGACACAAAAGTGTT--CTCCGATACAAACCCTCTCTGTGTACCAATCCATGTTGCTT-TCCCAGGTGGTTGGTT---TCAGTTGATGTCCAATCCTGCATGCTA------------GCTGAGTTAATAT--------------------------------------------------------------------------------------------------CACTAAGTGGGTCC--CTGGGAAAGG-GCCTTACCAATGCA-AACATTTGAATCAGCCGTCT-GAGTT-GGCCCAGT-GCCGT-ATTA--TTTGA-ATAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGC-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCGCTCATAA-ATA-T--TATGGTA-ATGAT-GGAAGTGAA-GTGAG-G-ACAGTA----ATGTG-CCT-CGGTCACCCCATTGAAATGT-ATTGGCA-GGACAATT-AACCTCTG-CAA-TGGAC-TTAGTA-AC-TGTTTTGAAGACATCAATC-AG-TCAAT--TGCGAG-GTTC-TGGCCTGGCCCCG-ATG-GATTTCC-ATCAAAG---ATGAAC-TCTG-GGTTGACCTCGGATCAGGTAA{AG}GA--TCATGGATGAAT-TTA???? Tuber_furfuraceum_FJ176920 ????ATATATACATT-GGACACTATTGTGCT--CCATGATCTAAACTCCCTCTGTGTACCAATCCATGTTGCTT-TCCCAGGTGGCGGGTC-AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGGAAAGG-ATCTCTTAAAACCGAATCAATTGAATCAGCTGTCT-GAGTT-GGCCCAGT-GCCAT-ATATGGTTTAA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCACTCATAA-ATA-T--TGTGGTA-TTGAT-GGAAGTGAA-CTGAG-T-CAAACA----ATGTA-CTT-GGGTCACCCCATTGAAATGC-ATAGGCA-GGACAATA-AACCTCTG-CAA-TGAAC-TTAGTA-AC-TGTCTGAAAGACACAAACC-AG-TTTGT--TGTTGG-GTTC-AGACCTGGCTTCC-ATG-GACCTCC-ATCCAAG---ACAAAT-TCTG-GGTTGACCTCGGATCAGGTAGGGA--TACCC??????????????? Tuber_huidongense_DQ478632_China_2 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-??????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATTGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCACTCATAA-ATA-T--TATGGTA-TTGAT-GGAAGTGAA-CTGAG-T-CAAACA----ATGTA-CTTGGGGTCACCCCGTTGAAATGC-ATAGGCA-GGACAATA-AACCTGTA-CAA-TGAAC-TTAGTA-AC-TGTCTGAAAGACACAAACC-AG-TTCCT--TGTTGGGTTAC-AGACCTTGCTTC--ACT-GACCTCC-ATCC?????????????????-?????????????????????????????????????????????? Tuber_huidongense_DQ478645_China_2 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TGCA-GAA-TCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCACTCATAA-ATA-T--TATGGTA-TTGAT-GGAAGTGAA-CTGAG-T-CAAACA----ATGTA-CTT-GGGTCACCCCGTTGAAATGC-ATAGGCA-GGACAATA-AACCTCTG-CAA-TGAAC-TTAGTA-AC-TGTCTGAAAGACACAAACC-AG-TTCCT--TGTTTGGGTGC-AGACCTTGCTTCC-ATG-GACCTCC-ATCCAAG---ACGAAT-TCTG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_liaotongense_DQ478645_China_5 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-?????????????????????????????????????????????????????????????????????????????????????????????????????????????????CATTGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGC-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCACTCATAA-ATA-T--TATGGTA-TTGAT-GGAAGTGAA-CGGAA-C-CAATCT----ATGTG-TTC-AGGTCATCCCATCGAAATGT-ATAAGCA-GGACAATC-AACCTGTG-CAA-TGGAC-TTAGTA-AC-TGTCTTGAAGACATAAACC-AG-TTTGT--TGCTTG-GTTT-TGACTTAGCTTCC-ATG-GACCTCC-ATCCAAGATAATAAAC-TCTG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_luomai_JT17457_Oregon ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-??????????????????????AAACCAGTCATCT-GAGTA-GGCCTAGT-GCTAT-ATTT-TTGTAA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA--AATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCACCCCT-TGGT-ATTCCTTG-GGGTATGCCTGTTCGAGCGTCACTATAGA-CCCTCTCATAA-ATA-T--TATGGTA-CTGAT-GGATGTGAA-TCGGG-A-TTGTCA----ATACA-CCT-GTATCACCCCATTGAAATGT-ATGAGCA-GGACAATC-CACCTCTG-TAA-TAGAC-TTAGTA-AA-TGT???????????????????-??????????????????-?????????????????-?????????????????????????????-?????????????????????????????????????????????? Tuber_lyonii_JT5665_Texas_2 ????????????????????????????GAGGGTCTGAATCCATCTCCTCACTGTGTACCAATCCATGTTGCTT-TCCCAGGTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGGAGAGG-TCCAACCCAACACC-AATAATTGAGTCCGCAGTCT-GAGTA-GGCCTAGC-GCCTTGAATG--TTTGA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCTCT-TGGT-ATTCCTTG-AGGCATGCCTGTTCGAGCGTCACTACAAA-CCCTCTCATAG-TTA-T--TATGGTA-TTGAT-GGAAGTGAA-CTGTG-T-CTATT{GT}----ATGTA-CTC-AC{AG}CCACTCCATTGAAATGA-ATAGGCA-GGACAAGT-GACAACTG-CAA-TGGAC-TTAGTA-AA-TGGTTTTCAGACATGGACC-AG-TTCTT--TGCTATGTTGT-ACAGCCTGTATCC-ATG-GACTCCC-ATCCAGT---AAGCAC-CTTG-GGTTGACCTCGAATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_malacodermum_32319_Spain CATTATGCATCTAGG-GGATACCAATGAGTTCCCTGAAGTGAAAGCCCTCCATGTGTACCAATCCATGTTGCTT-TCCCAGGTTGTTGGTC--ACGGGTCGCCAGCCATCGCTCAATGGTGTCCACTGGTTGAGTGCATCCGGAGGCTAAAGTGCTCCGTAGAATCCGTTCCTTCAGTTACTCGGTTGAAAAACGCCGCCATTTAGTCCGTAGGG-----------------------------ATCCCCGTGAGCAC--CTGGGAGAGG-GCCTATCCAAATCGATTATTTTTGATCAGCTGTCT-GAGTT-GGCCAAGT-GCCAT-ATTC--TTTGA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGC-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCCTTCATAA-----TATTATGGTA-TTGAT-GGATGTGAA-CTGTG-G-CAACCA----GTGTC-CCT-GGATCACCCTGTCGAAATGT-ATGGGCA-GGACAATC-AACCTCTA-CAA-TAGAC-TTAGTA-AC-TGTTCCAAAGACAAGAGAC-AG-TCCCT--TGCAGG-GTTG-TGGCCTCGCCTCC-ATG-GACCTCC-ATCCAAG---AAGAAC-TCTG-GGTTGACCTCGAATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_nitidum_BM105_Spain ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-??????????????????????GAATCAGCAGTCT-GAGTT-GGCCCAGT-GCCGT-CTTC--TTTGA-ATAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCCCTCATAT-GTA-T--TATGGTA-TTGAT-GGATGTGAA-CTCAG-G-CCTAGA----ATGCA-CCT-CAGTCACCCCGTCGAAATGC-ATAGGCA-GGACAATA-AACCTCCG-CAA-GGGAC-TTAGTA-AA-TGTTATGAAGACATAAACC-AG-TCCGT--CGCTCG-GTTC-TGTTCTGGCCTCC-ACG-GACCTCC-ATCCGAC---ATGAAA-TCTG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TT????? Tuber_quercicola_AY918957_Oregon CATTATGTATCTATG-GGACTTCAAAGTGGT--CCCTGATTCAAACCCTCTCTGTGTACCAATCCATGTTGCTT-TCCTAGGTGGTTGGTC---CGAGCTGCCGCCCAACATTGCCTGCTA------------GTTAAGTCAATCTGAGTTGCTATTATTGAAACTTGGAACCTGACACTTTCCCGATAGTGTGAGCTTTAATGAGTCAGCAAGCTCAATTGTTA---TCCGTCGGGATG----AGCTATTCAGGTCC--CTGGGAAAGG-GCCTATCCAAAGTT-AACACTTCAATCAGCTGTCT-GAGTT-GGCCGAGT-GCCAT-ATTC--TTTGA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCACTCATAA-ATA-T--TATGGTA-CTGAT-GGAAGTGAA-CCCTG-G-GCACTA----ATATG-CCT-AGATCATTCCATTGAAATGC-ATAGGCG-GGACGATC-AACCTTCG-CAA-CTGAC-TTAGTA-AC-TGTTTTCAAGACAAAAACC-AG-TCACT--TGCACG-GTTC-CAGCCCAGCCTCC-ATG-GACCTCGCATCCAAG---ATGAA--TCTG-GGTGACTC---GATCAGGTAGATA--CACGGAC????????????? Tuber_rufum_AY112894_Italy ?????????????????????????????????????????????????????????????????????TGCTT-TCCCAGGTGGTTGGTT---TTACTAGTTGTTTAACCCTTCCTGCTA------------GTTGAATTTACTT--------------------------------------------------------------------------------------------------TACTATGTAGGCTC--CTGGGAGAGG-GTCTGTTCAAAGCA-AACTATTGAATCAGCAGTCT-GAGTT-GGCCCAGT-GCCATATTTT--TTTGA-ATGAATT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCTCT-TGGT-ATTCCTTG-AGGCATGCCTGTTCGAGCGTCACTGCAAA-CCTACTCATAA-CTA-T--TATGGTA-ATGGT-GGATGTGAA-GAGAG-G-CTACTA----ATATG-TCT-CAGTCACCCCATTGAAATAT-ATAGGCA-GGACAATT-ATCTTTAG-CAA-AGAAC-TTAGTA-AC-TGTTTTGAAGACATATATT-AG-TTTCT--TGCTAG-GACT-TGGACTGACTTCT-ATG-GATCTCC-ATTAAAG---ACAAAC-TTTG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_rufum_var_lucidum_AZ2097_Italy CATTATACATACAGG-GGACGTTTTAGCGTT-C-CCGGACCCAAACCCTCTCTGTGTACAAATCCATGTTGCTT-TCCCAGGTGGTTGGTG---GCAGCAGCTGTCCAACTCTGCCTG-----------------------------------------------------------------------------------------------------TATAGCTTACCTCTTTGGATG----AACTATGCAGGCCC--CTGGGAGAGG-GCCTATCCTGAGCC-AATTATTGAATTAGCTGTCT-GAGTT-GGCCCAGT-GCCAT-TTTC--TTTAA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCGCTCATAA-ATA-T--TATGGTT-GTGAT-GGAAGTGAA-CTGAG-G-CTATCA----GTATG-CCT-GGGTCACCCTGTCGAAATTC-ATAGGCA-GGACAATT-AACCACTG-CAA-TGGAC-TTAGTA-AC-TGTTTCAAAGACATCAACC-AG-TCCCT--TGCTAG-GTGC-TGGCCTGGCCTCC-ATG-GACCTCC-ATCCAAG---ATAAAC-TCTG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_sp_RH922071_Iowa CATTATGCATAAATG-GGATACCAAAGCGTT--CCCTGACTCAAACCCTTCCTGCGTATCAACCCATGTTGCTT-TCCCAGTTGCCA-------------------------------------------------------------------------------------------------------------------------------------------------------------GTCCTTTCAGGCCG--CTGGGAGAGG-TCCCATAGAAATCT-ATTGATCAAATTGGCTGTCT-GAGTT-GGCCCAGT-GCCAT-ATTC--TTTGA-AAATGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCACCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCGCTCATAA-CCA-T--TATGGTG-TTGAT-GGAAGTGAT-CTGTA-G-CAACCA----CTGCT-TAC-TGTTCACCCCATCGAAATGC-ATAGGCA-GGATAATG-AACCTCCT-CAC-TGGAC-TTGGTA-AC-TGTTTTCGAGACATAAATT-AG-TCCCT--TGTGGT-GTTC-TGGCCTGGCCTTC-AAA-GACCCCC-ATTCAAG---GCGAAT-ACAG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_sp._3_Mexico ?????????TATCTG-GGATACCAATAAGGT-CCCTGAATCCATCTCCTCACTGTGTACCAATCCATGTTGCTT-TCCCAGGTCTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGGGAAGG-TCCCAACCCAACACTGATAATTGAGTGTGTAGTCT-GAGTA-GGCCCAGT-GCCTTGAAAT--TTTAA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGC-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCTCTCATAG-ATA-C--TATGGTA-TTGAT-GGAAGTGAA-CTGTA-T-CCATTG----GTGTA-CTC-ACACCACTCCATCGAAATGA-ATAGGCA-GGACAAGT-GGCAACTG-CAA-TCGAC-TTAGTA-AA-TGGTTTTCAGACATGGACC-AG-TCCTT--TGCTACGTTGC-ACAGCCTGTATCC-ATG-GACTCCC-ATCCAGT---GAGCAC-TTTG-GGTT?????????????????????????????????????????? Tuber_sp._China_DQ478675 CATTATACATTCATG-GGACACAATAGTGTT--CCCTGAT------------------CCAATCCATGTTGCTTTCCCAGGGTGTTTGGTCAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGGAAAGT-GTCCTTTCAAAACG-AATTATTGAATCAGCTGTCT-GAGTT-GGCCCAGT-GCCTT-ATTC--TTTAA-ATAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCA??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-???????????????????????????????????????????????????-??????????????????-?????????????????-?????????????????????????????-?????????????????????????????????????????????? Tuber_sp._EM_Estonia_AJ893251 ?????AATATATCTG-GGACACCCAGGAGGT--TCCTGACCCTATCTCTCTCTGTGTACCAATCCATGTTGCTT-TCCCAGGTATCCAGTC----------------TGTGCTGCCTGCAATTGATTCATACTGCTATGTCAACTCTTGCACTCATAGGTAGGGTGAGCTCAATGGGCCTCTGTCAG---------------------AGTGAGCTCAATGGGCC---CCTATCTGGGAG----AATTATGCAGGACCTCCTGGGAAAGG-TTTAAGCAAAAGCT-AATAATTGAACAGCCAGTCT-GAGCA-GGCCTAGG-GCCTC-ATGA--TTTAA-ACATGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGC-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCTCTCACGT-ATA-C--CGTGGTA-TTGAT-GGTAGTGGG-TTGCA-G-TTGCCG----ACACG-ACT-GCTCCACTCTGTTGAAATAT-ATAGGCA-GAACAGTT-GGCCTTAG-TAA-CAGAC-TTAGTA-AA-TGTTGTTAGCACATAAACC-AG-TCTCT--TACTAG-GTCA-GGTCCTGCCTTCC--TG-GACCCCC-ATCTAAA---ATGAAT-TCTG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_sp._JT15106_Quebec ?????TTAATATATC-TGGGAACCAAGGAGGTTCCCTGACCCAATCTCTCTCTGTGTACCAATCCATGTTGCTT-TCCCAGGTATCTAGTC----------------CATGCTGCCTGCAATTGATTCATAATGCTATGTCAACTCTTGTGCTCCCAGGTAGGGTGAGCTCAATGGGCCTCTGTCAGAGTGAGCTCAATGGGCC------------------------CCTATCTGGGAG----AATTATGCAGGACGGCCTGGGAAAGG-TCCAAGCAAAAGCA-AATAATTGAACAGCCAGTCT-GAGCA-GGCCTAGG-GCCTC-ATGA--TTTGA-ACATGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATC-AATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCTCTCACGT-ATA-C--CGTGGT???????????????????????????????????????????????????????????????????????????????????-???????????????????????????????????????????????????-??????????????????-?????????????????-?????????????????????????????-?????????????????????????????????????????????? Tuber_sp._JT1844_Oregon ????ACAC{AC}TATATG-GGA{CT}ACTAATGTGGT-CCCTTGACTAAAACCCTCTCTGCGTATCAATCTATGTTGCTT-TCCTAGGTGGTTGGTT---TCAGCTGCCGTCCAACATTGCCTGCTA------------GCTCA--TCAATCCGAGTGGTTAACTTGGAGTTTGATCTAT-----TTTACTGATGGGTTAAGCTTTAATGGGTCAGTGAGCTTAATTTATA---TCTATCTGGATC----AGCTATGTAGGCCC--CTGGGAAAGG-GTCCATTGCAAGTG-AATATTTCAATCCACTGTCT-GAGTC-GGCCTAGT-GCCTT-ATTC--TTTAA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCGTTCATAA-ATG-T--TATGGTA-TTGAT-GGAAGTGAA-CTGTT-G-CAACTA----AAGTG-TGT-GGATCACCCCATCGAAATAC-ATAGGCA-GGACAACA-AACCTCTG-TAG-CTGAC-TTAGTA-AC-TGTTTTCAAGACACAAACC-AG-TCACT--TGCTAG-GTTC-TAGCCTGGCCTCC-TTA-GACCTCT-ATTCAAG---ATAAAT-ACTG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_sp._TH_Epipactis_HB5_New_York CATTAAATATATCTG-GGACACCAAGGAGGT-TCCCTGACCCAATCTCTCTCTGTGTACCAATCCATGTTGCTT-TCCCAGGTATCTAGTC----------------CGTGCTGCCTGCAATTGATTCATAATGCTATGTCAACTCTTGTGCTCCCAGGTAGGGTGAGCTCAATGGGCCCCTATCTGGGAG-----------------------------------------------------AATTATGCAGGACCGCCTGGGAGAGG-TCCAAGCAAAAGCA-AATAATTGAACAGCCAGTCT-GAGCA-GGCCTAGG-GCCTC-ATGA--TTTGA-ACATGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTATAAA-CCCTCTCACGT-ATA-C--CGTGGTA-TTGAT-GGTAGTGGG-TTGCA-G-TTGCCG----ACACG-ACT-GTGCCACTCCGTTAAAACAC-ATAGGCA-GGACAGTT-GACCTTAG-TAA-CAGAC-TTAGTA-AA-TGTTGTTAGCACATAAAAC-AG-TCGCT--TACTAG-GTCA-GGGCCTGCCTTCC--TG-GACCCCC-ATCTAAA---ATGAAT-TCTG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_sp._ex._Conifer_Oregon_FJ789634 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-???????????????????TGTCAATCAGCTGTCT-GAGTG-GCCCTGGT-GCCTT-ATTC--TTTGA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTCG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCGCTCATAA-ATG-T--TATGGTA-TTGCT-GGAAGTGAA-CTGTT-G-CAACTA----AAGTG-TGT-GGATCACCCCATCGAAATAC-ATAGGCA-GGACAATG-AACCTCCTGTAGCTTGAC-TTAGTA-AC-TGTTTTCAAGACACAAACC-AG--CACT--TGCTAG-GTTC-AAGCCTGGCCTCC-TCA-GACCG????????????????????????-?????????????????????????????????????????????? Tuber_sp._ex._Corylus_North_Carolina ??????????????????????????????????????GACTTAACCCTCCCTGTGTATCAATCCATGTTGCTT-TCCCAGTTGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCTTTTCGGCTC--CTGGGAAAGG-TTCCATATAAATCT-ATTGATCAAATTGGCTGTCT-GAGTT-GGCCCAGT-GCCAT-ATTC--TTTGA-AAATGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCACCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCGCTCATAA-CTA-T--TATGGTA-TTGAT-GGAAGTGAT-CTGTA-G-CAACTG------ATG-CTTATGTTCACCCCATCGAAATGC-ATAGGCA-GGATAATG-AACCTCG--CAC-TGGAC-TTGGTA-AC-TGTTTTAGAGACATAAATT--A-TCCCT--TGTT---GTTC-TGGCCTGGCCTTC-AAG-GACCCCC-ATCCAAA---ACGAAT-AGAG-GGTTGACCTCG-ATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_sp._ex._Epipactis_atrorubens_California_2_AY634152 CATTATTTGTTTATG-GGACACAAAAGTGTTCTCTCTGA{CT}ACAAACCCTC{CT}CTGTGTACCAATCCATGTTGCTT-TCCCAGGTGGTTGGTT---TCAGT{CT}AATGTCCAATCCTGCATGCTA------------GCTGAGTTAATAT--------------------------------------------------------------------------------------------------{CT}ACTAAGCGGGTCC--CTGGGAAAGG-GCCTTACCAATGCA-AACATTTGAATCAGCCGTCT-GAGTT-GGCCCAGT-GCCGT-ATTA--TTTGA-ATAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGC-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCGCTCATAA-ATA-T--TATGGT{AG}-ATGAT-GGAAGTGAA-GTGAG-G-ACA{CG}TA----ATGTG-CCT-CGGTCACCCCATTGAAATGT-ATTGGCA-GGACAATT-AACCTCTG-CAA-TGGAC-TTAGTA-AC-TGTTTTGAAGACATCAATC-AG-TCAAT--TGCGAG-GTTC-TGGCCTGGCCC{AC}G-ATG-GAT{CT}TCC-ATCAAAG---ATGAAC-TCTG-GGTTGACCTCGGATCAGG{CT}AGGGA--TACCCGCTGAAC-TTAAGCA Tuber_sp._ex._Epipactis_helleborine_California_4_AY634169 CATTATTCATATATG-GGACATACAAGTGTT--TCCTGACCCAAATCCTCTTTGTGTACTTATCCATGTTGCTT-TCCCAGGTGGTTGGTT---TTACTAGTTGTTTAACCCTTCCTGCTA------------GTTGAGTTAACTT--------------------------------------------------------------------------------------------------TACTATGTAGGCTC--CTGGGAGAGG-GCCTATTTCAAGCA-AACTATTAAATCAGTTGTCT-GAGTT-GGCCTAGT-GTCATATCTT--TTTAA-ATAAATT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCACTCATAA-ATA-T--TATGGTA-ATGGT-GGATGTGAA-AGGAG-G-CTACTA----GTATG-TCT-CAGTCACCCCATTGAAATAC-ATAGGCA-GGACAATT-ATCTTTAG-CAA-AGGAC-TTAGTA-AC-TGTTATGAAAACATATATT-AG-TTTCT--TGCTAG-GATT-TGGACTGACTTCT-ATG-GATCTCC-ATTAAAG---ATAAAT-TCTG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_sp._ex._Epipactis_helleborine_California_4_AY634170 CATTACACATATATG-GGACACTAATGTGGT-CCCTTGACCAAAACCCTCTCTGCGTACCAATCTATGTTGCTT-TCCTAGGTGGTTGGTT---TCAGCTGCCGTCCAACATTGCCTGCTA------------GCTCAGTC-AACCCGAGTTGTTCACTTGGAGTTTGATCTTT-----TTTACTGATGGGTTAAGCTTTAGTGGGTCAGCGAGCTTAATTTATA---TCTATCAGGATC----AGCTATGCAGGCCC--CTGGGAAAGG-GTCCATCCCAAGTG-AATATGTCAATCAGCTGTCT-GAGTT-GGCCTGGT-GCCTT-ATTC--TTTGA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCGCTCATAA-ATG-T--TATGGTA-TTGAT-GGAAGTGAA-CTGTT-G-CAACTA----AAGTG-TGT-GAATCACCCCATCGAAATAC-ATAGGCA-GGACAAC{AG}-AACCTCTG-TAG-CTGAC-TTAGTA-AC-TGTTTTCAAGACACAAACC-AG-TCACT--TGCTAG-GTTC-AAGCCTGGCCTCC-TTA-GACCTCC-ATTCAAG---ATAAAC-ACTG-GGT??????????????????????????????????????????? Tuber_sp._ex._Epipactis_helleborine_California_AY634153 CATTATTCATATATG-GAACACATAAGTGTT--TCCTGACCCAAATCCTCTTTGTGTACTTATCCATGTTGCTT-TCCCAGGTGATTGGTT---TTACTAGTTGTTTAACCCTTCCTGCTG------------GTTGAGTTAACTT--------------------------------------------------------------------------------------------------TACTATGTAGGCTC--CTGGGAGAGG-GCCTATTCAAAGTA-AACTATTAAATCAGTAGTCT-GAGTT-GGCCTAGT-GTCATATCTT--TTTAA-ATAAATT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCACTCATAA-ATA-T--TATGGTA-ATGAT-GGATGTGAA-GGGAG-G-CTACTA----ATATG-TCT-CAGTCACCCCATTGAAATAC-ATAGGCA-GGACAATT-ATCTTTAG-CAA-AGGAC-TTAGTA-AC-TGTTTTGAAGACATATATT-AG-TTTCT--TGCTAG-GACT-TGGACTGACTTCT-ATG-GATCTCC-ATTAAAG---ACAAAT-TCTG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_sp._ex._Epipactis_helleborine_Japan_AB428788 CATTATGTATTCATG-GGATACCAAAGTGTT--CCCTGACACAAACCCTCTCTGCGTATCAATCCATGTTGCTT-TCCCAGGTGCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCTCCTGGGAGAGG-GCCTATCCATAGCG-AATTATTGAATCAGCTGTCT-GAGTT-GGCCCAGT-GCCAT-ATTC--TTTGA-ATAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCC-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCGCTCATAC-ATA-TTATATGGTA-TTGAT-GGAAGTGGA-CCGTG-G-TTACTAATA-ATGTA-TCT-GGATCACCCCATTGAAATGT-ATAGGCA-GGACAGTA-AACCTCTG-CAA-TGGAC-TTAGTA-AC-TGTTGTGAAAACATAGACC-AG-TCCTT--TGCCTG-GTTC-CAGCCTGGCCTCC-ACG-GACCTCT-ATCCAAG---ATAAAC-TCTG-GGTTGACCTCGGATCATGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_sp._ex._Oregon_FJ789635 -----------------------------------------------------------------------------------------------------------------------------------------------------------------GACTTAGAACCTGAC--ACTTCCCGATAGTGTGAGCTTAGT-GAGTCAGCAAGCTCAATTGTTAT---CTATCAGGATG----AGCTATTCAGGTCC--CTGGGAAAGG-GCCCATCCAAAGTT-AACACTTCAATCAGCTGTCT-GAGTT-GGCCGAGT-GCCAT-ATTC--TTTAAGACAAGTT----AAAACTTT-CAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATCTGCA-GAATTCAGTGAATCATCGAATCTTGGAACG-CACATTGCGCCCCTCTGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCTACTCATTACATA-T--TATGGTAGT-GAA-GGAAGTGAA-CTCTG-G-CCTCTA----ATATGCTGG--GATCACCCCGTTGAAATGC-ATAGGCA-GGAAAATC-AACCTGCGCAAC--CGACCTAGTAT-ACGTGTTTGCAACACA-AAAACCAGCTCACGA-TGATAG-GTTCATAGCCTGGCCTCCATG--GACGGCC-AATTCAA-GATAAATT-CT------------------------------------------------- Tuber_sp._ex._Populus_alba_Hungary_3_DQ355253 CATTATTCATATATG-GAACATATAAGTGTT--TCCTGACCCAAAACCTCTCTGTGTACTGATCCATGTTGCTT-TCCCAGGTGGTTGGTT---TTACTAGTTGTTTAACCCTTCCTGCTA------------GTTGAATTTACTT--------------------------------------------------------------------------------------------------TACTATGTAGGCTC--CTGGGAGAGG-GCCTGTTCAAAGCA-AACTATTGAATCAGCAGTCT-GAGTT-GGCCCAGT-GCCATATTTT--TTTGA-ATGAATT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCTCT-TGGT-ATTCCTTG-AGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCACTCATAA-CTA-T--TATGGTA-ATGGT-GGATGTGAA-GAGAG-G-CTACTA----ATATG-CCT-CAGTCACCCCATTGAAATAT-ATAGGCA-GGACAATT-ATCTTTAG-CAA-AGGAC-TTAGTA-AC-TGTTTTGAAGACATATATT-AG-TTTCT--TGCTAG-GACT-TGGACTGACTTTT-ATG-GATCTCC-ATTAAAA---ACAAAT-TCTG-GGTTGACCTCGGATCAGGTAGGGA---ACCCGCG???????????? Tuber_sp._ex._Populus_tremula_Austria_2_EF644166 CATTAAATATATCTG-GGATACCAAAGTGTT--CCCTGATCTAAACCCTCTCTGCGTACTCATCCATGTTGCTT-TCCCAGGGAATTGGTT---CCTGTAACCATTTAATCCTTCCAGCTA------------GCAGAGTCAACCT--------------------------------------------------------------------------------------------------CACTATGCAGGTCC--CTGGGAAAGG-GCTAATCTAAATTG-AATCATTA{AT}ATCAGCTGTCT-GATCT-GGCCCCGT-GCCGCAAATC--TTTGA-ATAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCACTCATAA-ACA-T--TATGGTA-ATGGT-AGAAGTGAA-GCGAG-G-CTACTA---TGTATG-CCT-TGGTCACTCTGCTGAAATGA-ATAGGCA-GGACAATC-AACCTCTG-CGA-TAGAC-TTATTA-AT-TGTTTTGAAAGCAAAAACC-AG-TCTCT--TGCTCG-GTTC-TGGCCTGGCTCCC-ATG-GACCTCC-ATGAAAG---ATAAA{CT}ATTGG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_sp._ex._Quercus_California_2_EF559298 CATTACACATATATG-GGACACTAATGTGGT-CCCTTGACTAAAACCCTCTCTGCGTACCAATCTATGTTGCTT-TCCTAGGTGGTTGGTT---TCAGCTGCCGTCCAACATTGCCTGCTA------------GCTCAG-TCAATCCGAGTTGTTAACTTGGAGTTTGATCTTTTT---TTTACTGATGGGTTAAGCTTTAATGGGTCAGCGAGCTTAATTTATA---TCTATCATGATC----AGCTATGTAGGCCC--CTGGGAAAGG-GTCCATCACAAGTG-AATATTTCAATCAGCTGTCT-GAGTC-GGCCTAGT-GCCTT-ATTC--TTTAA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CATATTGCGCCCTT-TGGT-ATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAACAA--CCAATCACCTTATG----CGTGGTA-TTGGC-AGATGTGAG-TTGAGTA-CAAAGCTTAGCAGTGATACTCTCCCACACTGTTGGAATGA-ATAGGCTAGAAAAGTAGATCATAGC--AA-CAGACTTTCAGA--G-TATTTTGAAATGCTAAATT-AGTTTGAA---GCTGG---TC--AGAATCTAGGCCATTT-GACCCCC-ATTCTGTG---TACAGCAGTAAGGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-T------ Tuber_sp._ex._Quercus_California_2_EF559300 CATTACACATATATG-GGACACTAATGTGGT-CCCTTGACCAAAACCCTCTCTGCGTACCAATCTATGTTGCTT-TCCTAGGTGGTTGGTT---TCAGCTGCCGTCCAACATTGCCTGCTA------------GCTCAG-TCAACCCGAGTTGTTCACTTGGAGTTTGATCTTT-----TTTACTGATGGGTTAAGCTTTAGTGGGTCAGCGAGCTTAATTTATA---TCTATCAGGATC----AGCTATGCAGGCCC--CTGGGAAAGG-GTCCATCCCAAGTG-AATATGTCAATCAGCTGTCT-GAGTT-GGCCTGGT-GCCTT-ATTC--TTTGA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCTT-TGGT-ATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAACT-ATACTTCTCAC-GTC-TGACGTGGTA-TTGGT-AGAAGTG-----GT--G-CAG--A----AATTG--CT----CCACTCCTCTAAAATTG-AAAGGCC-GGAAAATG--ATCTCGGTGAG--AGAC--TTGTAGAG-TGTTATGAAAACCTAAATC-AG-TCTTCA--GCCAG-GTTG--AGTCCGTGCTTC--TG-GACCCCC-ATCCACAGTAACATAT--TAA-AGTT------------------------------------------ Tuber_sp._ex._Quercus_Missouri_2_EU202705 CATTATGCATATCTG-GGATACCAATAAGGT-CCCTGAATCCATCTCCTCACTGTGTACCAATCCATGTTGCTT-TCCCAGGTACTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGGGGAGG-TC{CT}AAC{CT}CAACACC-AATAATTGAATCTGTAGTCT-GAGTA-GGCCTAGC-GCCTTGAATC--TTTGA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTC{AG}CATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCTCT-TGGT-ATTCCTTG-AGGCATGCCTGTTCGAGCGTCACTACAAA-CCCTCTCATAG-TCA-T--TATGGTA-TTGAT-GGAAGTGAC-CTGTG-T-CTATTG----ATGTA-CTC-ACACCACTCCATTGAAATGA-ATAGGCA-GGACAAGT-GACAACTG-CAA-TGGAC-TTTGTA-AA-TGGTTTTCAGACATGAACC-AG-TTCTT--TGCTATGTTGT-ACGGCCTGTATCC-ATG-GACTCCC-ATCCAGT---ATGCAC-TTTG-GGTTGACCTCGAATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_sp._ex._Quercus_Missouri_EU202709 CATTATGCATAAATG-GGATACCGAAGCGTT--CCCTGACTCAAACCCTCCCTGTGTATCAACCCATGTTGCTT-TCCCAGTTGCCA-------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTTTTCAGGCCG--CTGGGAGAGG-TCCCATAGAAATCT-ATTGATCGAATTGGCTGT-T-GAGTT-GGCCCAGT-GCCAT-ATTC--TTTGA-AAATGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGGGAATCAT-GAATCTT??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-???????????????????????????????????????????????????-??????????????????-?????????????????-?????????????????????????????-?????????????????????????????????????????????? Tuber_sp._ex._Quercus_douglasii_California_DQ974798 CATTATACATACATG-GGATACCAATGTGTT--CCCTGACCCATACCACCTCTGTGTACTGTTCCATGTTGCTT-TCCCAGGTGCTCAATC----------------------------------------------------------------------------------------------------------------------CTTGTAGTAGCTCATCGCAAATGACATGTTGCTGCTGCCCGCGAGTGGCTACTGGGAAAGG-TCTTATTTAACGCC-TTCAATTGAATTTGCTGTCT-GAGTT-GGCCTGGT-GCCAT-GAAC--TTTGA-ACAAGTTAAAAAAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAAACCCACTCATAA-ATA-A--TATGGTA-CTGAT-GGAAGTGAA-CGGTA-G-CCACTC----TTGCG-CTC-AGGTCACTCTGTTGAAATGC-ATAGGCA-GGCTAATC-AACCACTG-CAA-CTGAC-TTAGTA-AC-TGTTTTAAAGACATAAACC-AG-TCACT--TGTTAG-GTTC-CAGCCTGGCCATC-ATG-GACCTCC-CTCCAAG---TCGAAC-TCGG-G--TGACC?????????????????????????????????????? Tuber_sp._ex._Quercus_douglasii_California_EF661992 CATTACACATATATATGGACACTAATGTGGT-CCCTTGACTAAAACCCTCTCTGCGTACCAATCTATGTTGCTTCCTCTAGATGACCAAGA----CAGCTGCCGTCCAACATTGCCTGCTA------------GCTCAGTC-AATCCGAGTTGTTAACTTGGAGTTTGATCTTT---TTTTTACTTCCTAAATAAGCTTGGAAGGGACTGCGATTTTTCCTCAAA---GCCACCAAGAGC----AGCTATGTAGGCCT--CTGGGAAAGG-GTCCATCACAAGTG-AATATTTCAATCAGCTGTCT-GAGTC-GGCCTAGT-GCCTT-ATTC--TTTAA-ACAAGTT----AAAACTTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GTGCATGCCTGTTCGAGCGTCACTACAAA-CCCGCTCATAA-ATG-T--TATGGTATTTGAT-GGAAGTGAA-CTGTT-G-CAACTA----AAGTG-TGT-GGATCACCCCATCGAAATAC-ATAGGCT-GGACAACA-AACTTCTG-TAG-TTGACTTTTTTA-AC-TGTTTTCAAGACACAAAACCAG-TCACTT-TGCTAG-GTTC-TAGCCTGGCCTCCTTTA-GACCTCC-ATTTCAAAGATAAAATACTGG-GGTTGACCTCGGATCAGTTAGGGGATACCCCGCTGAACTTTATGCA Tuber_sp._ex._Quercus_garryana_Oregon_EU018588 ????????????????????????????????????????????????????????????ACGCTTAATGTGTT-TCTCTGGTCA---------------------------------------------------------------------------------------------------------------------------------------------------------TG----AGCTATACAGGCCA--CTGGGAAAGG-TTCAATTCAAACAT-TCTAAGTAAACCAGTCATCTGGAGTA-GGCCTAGT-GCTAT-ATTT-TTGTAA-ACAAGTT----AAAACTTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAA-AACGCAACGAAATGCGATAAGTAATGTGAAT-TGCAAGAATTCAGTGAATCATCAAATCTTTGAACGCCACATTGCAACCCT-TGGTAATTCCTTG???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-???????????????????????????????????????????????????-??????????????????-?????????????????-?????????????????????????????-?????????????????????????????????????????????? Tuber_sp._ex._Quercus_garryana_Oregon_EU018589 ????????????????????????????????CCCTTGACCAAAACCCTCTCTGCGTACCAATCTATGTTGCTT-TCCTAGGTGGTTGGTT---TCAGCTGCCGTCCAACATTGCCTGCTA------------GCTCAGTC-AACCCGAGTTGTTCACTTGGAGTTTGATCTTT-----TTTACTGATGGGTTAAGCTTTAGTGGGTCAGCGAGCTTAATTTATA---TCTATCAGGATC----AGCTATGCAGGCCC--CTGGGAAAGG-GTCCATCCCATTTG-AATATGTCAATCAGCTGTCT-GAGTT-GGCCTGGT-GCCTT-ATTC--TTTGA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGGTATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCGCTCATAA-ATG-T--TATGGTA-TTGAT-GGAAGTGAA-CTGTT-G-CAACTA----AAGTG-TAT-GGATCACCCCATCGAAATACAATAGGCA-GGACAACG-AACCTCTGTTAG-CTGAC-TTAGTA-AC-TGTT-TCAAGACACAAACCAAG-TCACT--TGCTAG-GTTC-AAGCCTGGCCTCC-TCA-GTCCTCCAATTCAAA--AA------ACTG-GGTTGAAC?????????????????????????????????????? Tuber_sp._ex._Quercus_garryana_Oregon_EU018590 ??????????????????????????????????CTTGACTAAAACCCTCTCTGTGTACCAATCTATGTTGCTT-TCCTAGGTGGTTGGTT----CAGCTGCCGTCCAACATTGCCTGCTA------------GCGCAGTC-AATCCGAGTTGTTAACTTGGAGTTTGATCTAT-----TTTACTGATGGGTTAAGCTTTAATGGGTCAGCGAGCTTAATTTATA---TCTATCAGGATC----AGCTATGTAGGCCC--CTGGGAAAGG-GTCCATCGCAAGTG-AATTTTTCAATCAGCTGTCT-GAGTC-GGCCTAGT-GCCTT-ATTC---TTAA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCA-TACAAA-CCCGCTCAAAA-GT-----TATGGTA-TTGATGGGAAATGAA-CGGTT-GCCAACCA----AAGTG-TGGGGGAACAC-CCATCGAAAACA-ATAGGCAGGGACAAAA-AACCTCCGGTAG-GCGAC-TTAGTA-AC-TGTTTTTAAGAAAAAAAC--AG-TCATT--GGCAGG----T-TTACCCGGCCCCA-ATA-AACCTCC-ATAAAAA-----AAAT-AATG-GGTTGACC---------------G--GAACAGAGGAAC-CCGGA?? Tuber_sp._ex._Quercus_garryana_Oregon_EU334899 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CAGCGAGCCTTAATTTTATATTCTATCAAGAATCCAAGGCTATGCAGGCCC--CTGGGAAAGG-GTCCATTCCAAGTGAAATATGTCAATCAGCTGTCT-GAGTT-GACCTGGT-GCCTT-ATTC--TTTGA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCGCTCATAA-ATG-T--TATGGTA-TTGAT-GGAAGTGAA-CTGTT-G-CAACTA----AAGTG-TGT-GGATCACCCCATCGAAATAC-ATAGGCA-GGACAATG-AACCTCTG-TAG-CTGAC-TTAGTA-AC-TGTTTTCAAGACACAAACC-AG-TCACT--TACTAG-ATTC-AAGCCTGGCCTCC-TCA-GAC??????????????????????????-?????????????????????????????????????????????? Tuber_sp._ex._Quercus_garryana_Oregon_EU334900 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CTGATGGGTTAAGCTTTAGTGGGTCAGCAAGCTTAATTGATA---TCTATCAGGATC----AACTAGATAGGCCC--CTGGGAAAGG-GTCCATCGCAAGTG-AATATTTCAATCAGCAGTCT-GAGTC-GGCCTAGT-GCCTT-ATTC--GTTAA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCGCTCATAA-ATG-T--TATGGTA-TTGAT-GGAAGTGAA-CTGTT-G-CAACTA----AAGTG-TGT-GGATCACCCCATCGAAATAC-ATAGGCA-GGACAACA-AACCTCTG-TAG-CTGAC-TTAGTA-AC-TGGTTTCAAGACACAAACC-AG-??????????????????-?????????????????-?????????????????????????????-?????????????????????????????????????????????? Tuber_sp._ex._Quercus_garryana_Oregon_FJ235159 ??????????????????????????????????CCTTGAGGAAATCCTCTCT-TGCCCCAATCTATGTTGCTTCCCCTAGGTGGTTGGTT---TCAGCTGCCGTCCAACTTTGCCTGCTA------------GCTCA--TCAACCCGAGTTGTTCACTTGGAGTTTGATCTTT-----TTTACTGATGGGTTAAGCTTTAGTGGGTCAGCGAGCTTAATTTATA---TCTATCAGGATC----AGCTATGCAGGCCC--CTGGGAAAGG-GTCCATCCCAAGTG-AATATGTCAATCAGCTGTCT-GAGTT-GGCCTGGT-GCCTT-ATTC--TTTGA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGAAAGTAATTGTGAAT-TGCA-GAATTCAGTGAATCCTCAAATCTTTG-ACG-CACATTGCGCCCCT-TGGA-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCGCTCATAA-ATG-T--TATGGTATTTGATGGGAAGTGAACCTGTT-G-CAACTA---AATGTG----------------------------------------------------TGA???????????????????????????????????????-??????????????????-?????????????????-?????????????????????????????-?????????????????????????????????????????????? Tuber_sp._ex._Quercus_garryana_Oregon_FJ348404 ????????????????????????????????????????????????????????????????????????TTTTCCTAGGTGGTTGGTT---TCAGTTGCCGTCCAACATTGCCTGCTA------------GCTCAGTCAAACCCGAGTTGTTCACTTGGAGTTTGATCTAT-----TTTACTGATGGGCTAAGCTTTAGTGGGTCAGCGAGCTTAATTGATA---TCTATCAGGATC----AGCTATGCAGGCCC--CTGGGAAAGG-GTCCATCGCAAGTG-AATATGTCAATCAGCTGTCT-GAGAT-GGCCTAGT-ACCTT-ATTC--TTTGA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATAGAATCTTTGAACG-CGCATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCGCTCATAA-ATG-T--TATGGTA-TTGAT-GGAAGTGAA-CTGTT-G-CAACTA----AAGTG-TGT-GGATCACCCCATCGAAATAC-ATAGGCA-GGACAATG-AACCTCTG-TAG-CTGAC-TTAGTA-AC-TGTTTTCAAGACACAAACC-AG-TCACT--TGCTAG-ATTC-AAGCCTGGCCTCC-TCA-GACCG????????????????????????-?????????????????????????????????????????????? Tuber_sp._ex._Salix_caprea_Poland_AY748863 CATTATGCATATATG-GGACAAGAAATTGTT--CCCTGACCCAAATCCTCCCTGCGTACCAATCAATGTTGCTT-TCCCAGGTGGTTGGCC---CCGGCAGCCACCCAATACTGCCTGCTAGGCGAGTTAACCAGTGGTCTGAATATCACTTGGAGAACTCGATCCTGTCCTGACAGAGTGAGC--------------TCAATATGTCGGTGAGTTCAATTTGTA---CCTGTCAGGATG----GGCTATGCGGGTAC--CTGGGAGAGG-GCTCATCCAAAGCG-AATAATTGAATCAGCTGTCT-GAGTT-GGCCCAGT-GCCGT-ATTC--TTTGA-ATAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCCCTCATAG-AAA-T--TATGGTA-TTGAT-GGAAGTGAA-CTAAG-C-CTACCA----ATTTG-CTT-AGGTCACCCCATCGAAATGC-ATAGGCA-GGACAATC-AACCTCCG-CAA-TGGAC-TTAGTA-GC-TGTTTTGAAGACATGAATC-AG-TCCTT--TGCTAG-GTTC-TGGCCTGGCCTCC-ATG-GACCTCC-ATCCAAA---ATGAAC-TCTG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_sp._ex._angiosperm_Italy_DQ402504 ?????????TATCTG-GGACACCCAAGTGTT--CCCTGACCCAAACCCTCTCTGTGTACCAATCCATGTTGCTT-TCCCGGGTGGTTTGTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGGGAAAGG-GCCTATCCAAAGCG-AATAATTGAATCAGCAGTCT-GAGTT-GGCCCAGT-GCCTT-ATTC--TTTGA-ACAAGTT---TAAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCGCTCATAA-GTA-T--TATGGTA-TTGAT-GGAAGTGAA-CTGAG-G-CTAGTC----CTATG-CCT-GGATCACCCCATCGAAATGT-ATAGGCA-GGACAATC-AACCTCTG-CAA-TGGAC-TTAGTA-AC-TGTTTTGAAGACAAAAATC-AG-TCCCT--TGCTTAGGAAC-TGGCCTGGCCTCC-ATG-GACCTCC-ATCCAAG---ATGAAA-TCTG-GGTTGACCTCGGATCAGGTAGGG??????????????????????? Tuber_sp1_DQ478643_China ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-????????????????????????????????????GAC---------------------------------------------------------------------------------------------------------------------------AATTACGTGAATCATCTAATCTTTGAACG-CACATGGCGCCCCT-TGGT-ATTCCTTGAGGGCATGCCTGTTCGAGCGTCACTACAAA-CCCTCTCACCA-ACA-T--TGTGGTA-TTGAT-GGAAGTGTA-CAGTG-G-TTACCT----ATGTG-TCC-ACCGCACTCTGTTGAAATAC-ATTGGTA-GAACAATT-GATCTTTG-TAA-CGAAC-TTAGTA-AA-TGTTTTTAGAACATCAATC-AG-TTCAT--TGCAAGAGTCT-TGAACCTGCCTCCATTG-GATCCCC-ATCTAAT---ATGAAC-TTGG-GGTTGACCTCGAATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_spinoreticulatum_U188_Maryland_isotype ??????????????????????????????????????????{AT}GTT{AT}{AC}CCTCTGTGTACCGAGCCATGTTGCTT-TCCCAGGCTACCTACT--GTTGGTATCCACCTGCTCTTCCCTGCTG------------GGTTG----------------------------------------------------------------------------------------------------------AGCTGTGTGGGTTTC-CTGGGAAAGG-TATAATATAAATGCTAATTGTTGAACAAGCTGTCT-GAGGA-GGCCCAGT-GCCGC-ATAT--TTTGA-ATAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCTCT-TGGT-ATTCCTTG-AGGCATGCCTGTTCGAGCGTCACAATTAC-CCCT{CG}TCACGG-ATC-T--CGTGGTG-TTGAT-GGTAGTGGA-TTCCA-G-TCACTG----ATGTGTGGCTATACTACTCCATCGAAATGA-ATAGGGA-GGACTATT-GGCCTCAG-CAA-TGGAC-TTAGTA-AA-TGTTTTCAGAATGTAAACC-AG-TCTTG--TGCCAG--GTC-TGGTCCGGTCCTA-CTG-GATCCCGCATCCAAC---ATGTAT-TCTG-GGTTGACCTCGGATCAGGTAAGGA--TACCCGCTGAAC-TTAAGCA Tuber_taiyuanense_DQ478637_China ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????AATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTGAGGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCCATCATAG-AAA-T--TATGGTA-TTGAT-GGAAGTGAA-CTGAG-C-CTACCA----ATATG-CCC-AGGTTACCCCATTGAAATGC-ATAGGCA-GGACAATT-AACCTCTG-CAA-TGGAC-TTAGTA-GC-TGTTTTGAAAACATGAACC-AG-TCCCT--TGCTAG-GTTC-CAGCCTGGCCTCC-ACG-GACCTCC-ATCCAAG---ATGAAT-TCTG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_texense_JT15162_Texas ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-??????????????????????GAGTCTGTAGTCT-GAGTTAGGCCTAGA-GCCTAGAACT--TTTAA-ACATGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTTGAGCGTCACTACAAA-CCCTCTCATAG-ATA-T--TATGGTA-TTGAT-GGAAGTGAA-CTGTG-T-CTACTG----GTGTA-CTC-GCACCACTCCATCGAAATGA-ATAGGCA-GGATAGGT-GGCAACCG-CAA-GCGAC-TTGATA-AA-CGGTTTTCAGACATGGACC-AG-TCCTT--TGTTATGTTGC-GCAGCCTGTATCT-ATG-GACTCCC-ATCCACT---AAGCAC-TTTG-GGTTGACCTCAAATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA ; END; BEGIN CODONS; CODONPOSSET * UNTITLED (CHARACTERS = Fig4_Rufum) = N: 1-796; CODONPOSSET CodonPositions (CHARACTERS = Fig4_Rufum) = N: 1-796; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M14824] TITLE Fig1_ITS_GuideTree; LINK TAXA = Taxa4; DIMENSIONS NCHAR=1239; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Choiromyces_alveolatus_97 -----------------------------------------------------------------------------------------------------------------------------------GC?---------GGCGGTCCCG?-AGACGGGA-------------CGCCTGACCGTGTTATCA---GAAACCCCACCGCGTACCGCTCCATGTTGCTTCCCCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGCAGCCCTTTGCCTGCCCGGC----------------------------------ACGCCGGAGGCGC-C-TGGGGG-----AGGGCC----------CACTCCAAT----------CTCGCTTTGTCCA-GCGG-AAGAGAAGTCTGAC-TTGG----CC-ACAGTGCCATCAGTATT------AACGTACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAC--AACCTC-GTCACTTC--C----AC-TGTGGTGTTGGCGGCAGTGGTCACCAGC-----ACGGA-GG-------------ATCTTCTCCCCGTCTGCCCACTCC-GCCGAAATAAAT-CAGGCGGACAAACTGA--TCTCAGCG--ACTGACTTAGTAAAA-----------------TCAATCAGCCAGGA-GTGAGGTTACGTC----CAGCCCAGCTTC---GGA-CCCC-------CATCC----GTTGCCACGCAGAC---CATG-GGTTGGCCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Choiromyces_alveolatus_HS2886 -------------------------------------------------------------------------------------------------------------------------------------G---------CGGTCCCGTAG-ACGGGA---------------CGCCTGACCGTGTTATCA---GAAACCCCACCGCGTACCGCTCCATGTTGCTTCCCCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGCAGCCCTTTGCCTGCCCGGC----------------------------------ACGCCGGAGGCGC-C-TGGGGG-----AGGGCC----------CACTCCAAT----------CTCGCTTTGTCCA-GCGG-AAGAGAAGTCTGAC-TTGG----CC-ACAGTGCCATCAGTATT------AACGTACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAC--AACCTC-GTCACTTC--C----AC-TGTGGTGTTGGCGGCAGTGGTCACCAGC-----ACGGA-GG-------------ATCTTCTCCCCGTCTGCCCACTCC-GCCGAAATAAAT-CAGGCGGACAAACTGA--TCTCAGCG--ACTGACTTAGTAAAA-----------------TCAATCAGCCAGGA-GTGAGGTTACGTC----CAGCCCAGCTTC---GGA-CCCC-------CATCC----GTTGCCACGCAGAC---CATG-GGTTGGCCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Choiromyces_meandriformis_DL_Oregon -----------------------------------------------------------------TAA-AAGTCGT-AACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAC----ACCATCTCCGGCG---------GGCGTCCCCGC-GAGGGGT--------------CGCCCAACGG------TATCAAGAAACCCCCCGTGTACCTCTCCATGTTGCTTCCCCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGGCAGCCGTCGCCTGCCCGGCC-CACGCCCC---ATCCGG----------GGCGTGTGGCCGGAGGTGC-C-CGGGGG-----AGGACC----------AACCCCAAC----------CTCCAACCATCCA-GTGG-AAGAGAAGTCTGAC-CGGG----CC-AC-GTGCCATCTGTATT------AACAAACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAC--AAACCC-CTCACTTCTGT----AT-AGTGGTGTTGGCGGAAGTGGT-----GCCCGCGCTGGG-GT--------------TCGTCTCCCCCGCCGCCCACTCC-GCCGAAATGCAT-CGGGCGGACAAACTGA--TCTCAGCA--ACTGACTTAGTAAAA-----------------TCAATCAGCCAGGA-GTTAGGTTACGTTACGCCTTGCCGGCCAGCTTGGA-CCCC-------CATCC----AACTTGGTACAAAT---CATG-GGCTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Choiromyces_meandriformis_RH691_Iowa ---------------------------------------------------------------------------------------------------------------CATTAC----ACGATCTCCGGTG---------GGCGTCCCCGG-AAGGGGT--------------CGTCCAACGG------TATCAAGCAATCCCCTGCGTACCTCTCCATGTTGCTTCCCCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGCAGCCGTCGCCTGCCCAGCC-CATGCCCC---ATCCGG----------GGTGTGTGGCCGGAGGTGC-C-CGGGGG-----AGGACC----------AACCCCAAC----------CTCCAACCATCCA-GTGG-AAGAGAAGTCTGAC-CGGG----CC-AT-GTGCCATCTGTATT------AACAAACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAC--AAACCC-CTCACTTCTGT----AT-AGTGGTGTTGGCGGAAGTGGT-----GCCCGCGCTGGG-GA--------------TCGTGTCCCCGGTGGCCCACTCC-ACCGAAATGCAT-TGGGCAGACAAACTGA--TCTCAGCA--ACTGACTTAGCAAAA-----------------TCAATCAGTCAGGA-GTTAGGTTATGT-----CTTGCCAGCCGGCTTGGA-CCCC-------CATCC----AACTTGGTACAAAT---CATG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Dingleya_sp_JT31575_Australia ---------------------------------------------------------------------------------------------------------------CATTAG-----AAAGCTTATACGT--------AGAGGCTGCCG-GAGAGGGGGGGCTCGAATCCCCTTCCCCGGTGGGGCTACAATAAACCCAAACCGCGTACCTGACCATGTTGCTTCCCCGGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCCCAGGGCGACCTGCC-----------------------------------------------GTGGAC-C-GGGAGA-----AGGGCCGGAATGCATTTCCTGAAAG--------CACCCCAACCAGCAT-GTGG-ATGAGATGTCTGACGCTGG----CCTTTTGCGCCACCGGTTTTG-TTTTAACATACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCAGGGCATTCCTTG-GGGCATGCCTGCTCGAGCGTCACATAA--AAACCCCCTCACAAGCAT-----T-TGTGGTGCTGGCGGATGTGGCCACCCCCAGTTTTGGGG-GC--------------GCC--------------CACACC-GCTGAAATGGAT-CAGGCGGACGCAACCCCCTCTCGCCA--ACTGGCTTAGTAAAATC---GACGTGAA---GTCAACCAGCCAGGA-GTAAGGGAGACGT----CTCGCCCGCAGTGAAGGACCCCG-------CATCC----ACGGAGATGAGAAG--CCTTG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Labyrinthomyces_sp_JT27750_Australia ---------------------------------------------------------------------------------------------------------------CATTAA-AGAAAGATTTAACCTGT--------AGATGCTGC----AGGAGAGGGGGGGTCAGATCCCCCTTTCCCAGCGGGCTACGAAACCCAAACCGCGTACCTGACCATGTTGCTTCCCCGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGCAGGGCGACCTGCCCGGTGC-TGGGCCCC---CCATAGCAG-----GGGGACGCGCCGGCCATGGGC-C-GGGAGA-----AGGGCCGGAATGTAC-TTTCCTGAAAAGAAGAACCCCCCAACCAGCCC-GAAG-ATGTGGAGTCTGACGCCGG----CC-TTCGTGCCGTCGGTTTAGTTTTTAACACACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCAGGGCATTCCTTG-GGGCATGCCTGCTCGAGCGTCACATAA--AAGCCCCCTCACAAGCAT-----T-TGTGGTGCTGGCGATTGTGGCCGTCCCCCCTCGCCGGG-GG-----------------GGGCC---------CACTCC-GCTGAAATGGAT-CAGGCGGACGCAA-CCCTTCTCGCCC--ACTGGCTTAGTAAAACC---GACGTCAA---GTCGACCAGCCAGGA-GTTTGGTGGCG-T----CTTGCCCGCAACGAAGGACCCCC-------CCTCCTCCATGGAGTTGAGAAAC---CTTG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Reddellomyces_sp_JT27724_Australia ---------------------------------------------------------------------------------------------------------------CATTAA-----GAAAGTAATCCGT--------AGGCATCGCCT-GGAGAGGGGAGGTCATAAAT-CCCCTTTCCCGGTGCTCTACCAAACCCAAACCGTGTACCAAACCATGTTGCTTCCCCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGCAGGGAGACCTGCCCGGCAT-TGG-CCCC---CCGGCTTTGGCC--GAGGGCCTGCCCGCTGTGGGC-T-GGGAGA-----AGGGCCTGAACGAGTATGTTCTGAAACCCGTCACCCC--AAACACCCT-GAAG-AGGAGAAGTCTGACCATGG----CG-TTTGCGCCAACCGTTTTG-TTACAACATACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCAGGGCATTCCTTG-GGGCATGCCTGCTCGAGCGTCACATAGTAAAACCCCCTCACAAGAGT-----T-TGTGGTGGTGACGGATGTGGCTTCGCCCCCTGACTTTG-GG-----------------GGGCCC--------CACACC-GTTGAAATGGAT-CCGGCGGACGCAACCCCCCCTCGACCAAACTGGCTTAGT--AATGCTCGACGTCAA---GTCGACCAGCCAGGA-GCGGTGTCGACGT----CCTGCCCGCAACAATGGACCCCCCC-----CATCC----ATGGCGATGAGGAA-ACCTAG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Reddellomyces_sp_JT6873_Australia ---------------------------------------------------------------------------------------------------------------CATTAA-----GAAAGTAATCCGT--------AGATATCGCCT-GGAGAGGGGACGTCAAAATC-CCCTTTCCCCGGTGCTCTACCAAACCCAAACTGTGTACCAAACCATGTTGCTTCCCCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGCGGGGTGACCTGCCCGGCAT-TGGTCCCC---CCCGCTTTGACCGAGAGGGCCTGCCGGCTGTGGGC-T-GGGAGA-----AGGGCCTGAACGAGTGTGTTCTAAAAACCCTCCCCCA--AAACAGCCT-GAAG-AGGAGAAGTCTGACCATGG----CC-TTTGCGCCAACCGTTTTG-TTACAACATACTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCAGGGCATTCCTTG-GGGCATGCCTGCTCGAGCGTCACATAGAAAAACCCCCTCACGAGCAT-----T-TGTGGTGCTGACGGATGTGGCTCGCCCCCCCGACCTGG-GG-----------------GAGCCC--------CACACC-GTTGAAATGGAT-CCGGCGGACGCAA-CCCTCCTCGCCCAAACTGGCTTAGT--AATGCTCGATACCTA---GTCGACCAGCCAGGA-GTAGGGTTGACGT----CTCGCCCGCAACAATGGACCCCCTCCGTC-CGTCA----------GGATGAGGAACCTAG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_aestivum_JT30500_Sweden --------------------------------------------------------------------------------GGTTT--CCGTAGGTGAACCTGCGGAAGGATCATTAA----A----CAAGCCGGGT--------GACGCCCGTG-GGGCGGCCA------------CCCAGAGCACCA----------AACCACAGCTGCGTACAATGCCATGTTGCTTCCCCGGGCCAGCGGCCGTCGCCGCCCGTCGGCGAGACACAGGCGTGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGCCG-CGCGGAGGCGC-C-CGGGGGT----G-GGGCTCCCGC----CCCTCGAAACTA-------AGACGTCGGGA---GCGT-GGACTGTGTCTGACCTGGGC--CAC-ATTGGGCCGCCGAAAACT-TG---ACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGGGGCATTCCTCA-GGGCATGCCTGTCCGAGCGTCAGTGCA--AACCAC-CTCACGGA-AC-----A-CGTGGTGCTGGCGGAGGTGGTG-----------TCGGA-TCGGGCCGCGATGGCGGCCCGGTCCTCCC----CACCCC-GCCGAAATGTAT-GGGGAGCAACACG-CAT-TGGCGGAC---CCGACTTGGTAGACGCTGTGGTTAGCG---TGGAGC-AGTCGCGGGGCCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_anniae_JT13209_Washington_holotype -------------------------------------------------------------------A-GTCGTAA-CAAGGTTT--CCGTAGGTGAACCTGCGGAAGGATCATTAC-----A---AATGTCTG---------GGATGTCCA----ATCGGG--------------CCCCCAAGC-------A----AACACATCCATGTGTACACTCCCATGTTGCTTTCCCAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGTGG--CCACTGCTGCCAGCC-CAACCCCT---TGAT-T---------GGGGTCCTGGGTTGAGGTGT-C-TGGGGA-----AGGGCCC---------AATAAC-AA----------AC--CTTTG---A-ACCA-ATTAGTTGTCTGAG-TAGG----CC-AC-CTGCCGCAA-TCTT--T-AAAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAA--AACCCC-CTCACAGA--T----AA-TGTGGTATTGGTAGAAGTGA-------------ACGGT-AC-T-TAC-----ATTACCTTGTCT--------CACTCT-GCTGAAATGAAT-TGGCCAGAGAAGT-GGACCCATGGTA--ATTGACTCCAG-GAGTGTT-TTTCAATG---CTAAACTAGTCTTTA-CCCAAGTCAAGTT----CTG---AGCTAC--CGGACCCCC-------CATTA----A-----GTCCAAAA-CAGAGT-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_anniae_JT22695_Oregon -------------------------------------------------------------------------------------------------------GGAAGGATCATTAC-----A---AATGTCTG---------GGATGTCCA----ATCGGG--------------CCCCCAAGC-------A----AACACATCCATGTGTACACTCCCATGTTGCTTTCCCAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGTGG--CCACTGCTGCCAGCC-CAACCCCT---TGAT-T---------GGGGTCCTGGGTTGAGGTGT-C-TGGGGA-----AGGGCCC---------AATAAC-AA----------AC--CATTG---A-ACCA-ATTAGTTGTCTGAG-TAGG----CC-AC-CTGCCGCAA-TCTT--T-AAAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAA--AACCCC-CTCACAGA--T----AA-TGTGGTATTGGTAGAAGTGA-------------ACGGT-AC-T-TAC-----ATTACCTTGTCT--------CACTCT-GCTGAAATGAAT-TGGCCAGAGAAGT-GGACCCATGGTA--ATTGACTCCAG-GAGTGTT-TTTCAATG---CTAAACTAGTCTTTA-CCCAAGTCAAGTT----CTG---AGCTAC--CGGACCCCC-------CATTA----A-----GTCCAAAA-CAGAGT-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_asa_M1828_Italy ----------------------------------------------------------GAAGTAAAA?-GTCGTAA-CAAGGTTT--CCGTAGGTGAACCTGCGGAAGGATCATTAC-----A---AATATCTG---------GGATGTTCA----ACTGGA--------------CTCCCAAGT-------A----AACACATTCATGTGTACCCTTCCATGTTGCTTCCCCAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGTGG--CCATTGCCACCAGTC-AAGTCCCT---AATT-A---------AGGCTCCTGGGCTGAGGTGT-C-TGGGGA-----AGGACCC---------ATTATC-AA----------AC--CTTTA---A-ACAA-ATTAGTTGTCTGAG-ACGG----CC-AT-GTGCCGCAA-TCTT--T-AAAATATATT-AAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTAGGTATTCCTGA-GGGCATGCCTGTTCGAGCGTCACTAAA--AACCAT-CTCACAGA--T----AA-TGTGGTATTGGTAGAAGTGG-------------GTAGT-AC-TGGAT-----TGTACTTTATCC--------TACTCC-ACCGAAATCAAT-AGGTCAGAAATGT-GGA-CCATGGTA--ACAGACTCTCA-GAGTGTTATAAAAATA---CTATACTAGTCTTA--ACCTGGTTGGAAT----CTG---AGTCAC--TGGA-CCCC-------CCTTG----A-----GTCCAAACAAAGAGA-GGTTGACCTCG------------------------------------------------------------------------------------------------- Tuber_bellisporum_nom_prov_JT11679_Oregon_holotype -------------------------------------------------------------------------------------------------------------------------------------G---------GGATGC?CTTT-A-----------------------------------------A?GGC?TCCCTTAGTA--AACCAATATTAAACCCTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-ACAA-ACCCATAGTCTGAG-AAGG----CT-AT-GTGCCATAATTATA-----TAATATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAACTAGACCC-CTCACGTT--T----GA-CGTGGTATTGATGGAAGTGGG------------ATAGA-AA-----------------TTGCTT--------TACTCC-TTCAAAATTTAA-AGGCCGGAAAAAT-GA--TCTCGGTG--ACAGACTTGCA-GAGTGTT-GTGAAAAC---CTAAATTAGTCTTGA-GCCAGGTCTAG-T----CCG---TGCTTC--TGGA-CCCC-------CATCC----A-----ATGTAAAC----------------------------------------------------T-ATTAGA-------------------------------------------------------- Tuber_bellisporum_nom_prov_JT7270_Oregon_paratype -------------------------------------------------------------------------------------------------------------------------------------------------ATGCCTT---------------------------------------------TAAGGCTCCCTTAGTA--AACCAATATTAAACCCTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-ACAA-ACCCATAGTCTGAG-AAGG----CT-AT-GTGCCATAATTATA-----TAATATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAACTAGACCC-CTCACGTT--T----GA-CGTGGTATTGATGGAAGTGGG------------ACAGA-AA-----------------TTGCTT--------TACTCC-TTCAAAATTTAA-AGGCCGGAAAAAT-GA--TCTCGGTG--ACAGACTTGCA-GAGTGTT-GTGAAAAC---CTAAATTAGTCTTGA-GCCAGGTCTAG-T----CCG---TGCTTC--TGGA-CCCC-------CATCC----A-----ATGTAAAC----------------------------------------------------T-ATTAGA-------------------------------------------------------- Tuber_beyeleri_JT32597_Oregon ---------------------------------------------------------------------------------------------------------------CATTAT------TATAATGCGTGG--------AAATGCCCCTA-ACAAGGG------------------------------------------CTCTCTATAAAACTCTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-ACTTACTGTCTGAG-AAGG----CC-AT-GTGCCGTAATCTTT-----AAACATTTT-AAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATA-GGGCATGCCTGTTCGAGCGTCACTAAA--AACCTC-ATCACAAA--G----AG-TGTGGTATTGGCAGAAGTGG-------------GTAGG-GC---CAGCAAGGAAGTGCTGGCCC--------CACTCT-GCTGGAATGAAT-AGGCCGGAAATGTAGA--CCATGGTA--ACAGACTTTCA-GAGTATC-GTCAAATG---CTAAATTAGTTTGTATGCTTGGTCAGAAT----CTA---GGCCAT--TGGA-CCCC-------CATTC----T-----GTATAAAG-CAGCAA-TGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_borchii_GB1_Italy ---------------------------------------------------------------------------------------------------------------CATTAC--------GAATGTATG---------GGATGCCCT----ATCGGA--------------CTCCCAAGCAA----------AACACATTCCTGTGTACTCTCCCTC?TTAAACTTTTGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCA-ATTAGTAGTCTGAG-AAGG----CC-AT-GTGCCGTAAAATTT-----AAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAA--AACCCC-CTCACAGA--T----AA-TGTGGTATTGGTAGAAGTGG-------------ATGGT-AC-------TAACACTACTTTGTCT--------GACTCT-ACTGAAATGAAT-AGGCCAGAGAAGTTGA--CCGTGGTA--ATAGACTCCAG-GAGTGTT-TTAAAATG---CTAAATTAGTCTTC--TCCAAGTCATGTT----CTG---AGCTAC--CGGACCCCC-------CATTT----A-----GTCCAAAC-TAGAGA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_borchii_GB14_Italy ---------------------------------------------------------------------------------------------------------------CATTAC----AA---AATGTATG---------GGATGCCCT----ATCGGA--------------CTCCCAAGCA------A----AACACATTCCTGTGTACTCTCCCTCATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA----------AC--TTTTG---A-ACCA-ATTAGTAGTCTGAG-AAGG----CC-AT-GTGCTGTAA-AATT--T--AAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAA--AACCCC-CTCACAGA--T----AA-TGTGGTATTGGTAGAAGTGG-------------ATGGT-AC-T-AAC-----ACTACTTTGTCT--------GACTCT-ACTGAAATGAAT-AGGCCAGAGAAGT-TGA-CCGTGGTA--ATAGACTCCAG-GAGTGTT-TTAAAATG---CTAAATTAGTCTTC--TCCAAGTCATGTT----CTG---AGCTAC--CGGACCCCC-------CATTT----A-----GTCCAAAC-TAGAGA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_brumale_GB21_Italy ---------------------------------------------------------------------------------------------------------------CATTAT----AA---ATA-TCTG---------GGA?TC-?G---------T--------------CCCTGATCTT------C----AA--TCTCTCTGTGTACCAATCCATGTTGCTTTCACAGGCTAAGTGATATTTCCTACTCGTCAGTGGTACACAATGTCAGAGCCAATCTAATGCTTTCCACTATTGCTATCTTGTACTACCTGACTCCAGTTGCTACACATTGCCGATATATCCTTCCTTTGATTATCTAAGCTATTG--------------------------------TACTTGCTATGGTATCGATCGTTAGACTGTATTGGTGTCTTGCTACAAATTGGACAGGTTGAC--AGGTAGTTGGTCATTACATTCTATTTGTTCTGTCA--TTAATACCGCAAACG-TTTAGCTA---TTATAT---------TGTTAGAGCTATGTAGGCTC-C-TGTGGA-----AGGT-CT---------TCACCTTAA----------CA--AATTG---T-ATGA-GTATGTAGTCTGAT-ATGG----CC-AA-GTGCCAGATTTATT--G--AGATATTTG-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATAGCGCCCTTTGGTATTCCTTA-GGGCATACCTGTTCGAGCGTCACTGCT--AACTTC-CTCACAAA--T----AT-TGTGGTCTTGGTTGCTGTAGA------------TTGTG-GG-TATATTTAGTACATATGCTCACGAGA----TACTCT-GCTAAAATTCAT-CAGGTGGATACCA-GG--TATAAATA--ACAGACTTTAT-AAATGTC-TACAGGAT---ATGAATTAGTTGTTT-AGTATAT-CTG-A----TAC---TGCTATCATGGA-TCCC-------CATCT----T-----GAATAAAT---TATG------------------------------------------------------------------------------------------------------------- Tuber_brumale_GB22_Italy -------------------ACTGCCAGGTGCAAAGTTGGTCAAACTTGGTCATTTA?AGGAAGTAAAA-GTCGTAA-CAAGGTTT--CCGTAGGTGAACCTGCGGAAGGATCATTAT----AA---ATA-TCTG---------GGATTCAAG---------T--------------CCCTGATCTT------C----AA--TCTCTCTGTGTACCAATCCATGTTGCTTTCACAGGCTAAGTGATATTTCCTACTCGTCAGTGGTACACAATGTCAGAGCCAATCTAATGCTTTCCACTATTGCTATCTTGTACTACCTGACTCCAGTTGCTACACATTGCCGATATATCCTTCCTTTGATTATCTAAGCTATTGAA?ACTGCTGGCCAGCTGCCGGCTAGTAGTTCTACTTGCTATGGTATCGATCGTTAGACTGTATTGGTGTCTTGCTACAAATTGGACAGGTTGAC--AGGTAGTTGGTCATTACATTCTATTTGTTCTGTCA--TTAATACCGCAAACG-TTTAGCTA---TTATAT---------TGTTAGAGCTATGTAGGCTC-C-TGTGGA-----AGGT-CT---------TCACCTTAA----------CA--AATTG---T-ATGA-GTATGTAGTCTGAT-ATGG----CC-AA-GTGCCAGATTTATT--G--AGATATTTG-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATAGCGCCCTTTGGTATTCCTTA-?GGCATACCTGTTCGAGCGTCACTGCT--AACTTC-CTCACAAA--T----AT-TGTGGTCTTGGTTGCTGTA?A------------TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Tuber_californicum_JT28058_California ----------------------------------------------------------------------------------------------------------AGGATCATTAC-----A---AATGTCTG---------GGATGTCCA----ATTTGG--------------CTCCTAAGC-------A----AACACTTCTATGTGTACTCTCCCATGTTGCTTCCCCAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGTGG--CCACTGCTGCCAGTC-CGGCCTCT---TAA--C---------GGGTTTCTGGTCTGAGATGT-C-TGGGGA-----AGGTC-C---------ATTATT-AA----------AC--TTTTA---A-ACCA-ATTGCCAGTCTGAG-AAGG----CC-AT-GTGCCGTAA-TCTT--T-AAAACATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATACCTGTTCGAGCGTCACTAAA--AACCAT-CTCATATA--T----AA-TGTGGTATTGGTAGAAGTGG-------------GTAGT-AT-T-AAT-----AGTACTTTGTCT--------TACTCT-ACTGAAATGCAT-AGGCCAGAAAAGT-GGA-CCATGGTA--ACAGACTCTCA-GAGTGTT-TTAAAATG---CTAAATTAGTCTTA--CCACAGTTGATAT----CTG---AGCTAC--CGGA-TCCC-------CATTT----A-----GTCCAAAC-CAGAGA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_canaliculatum_JT28215_New_Jersey ---------------------------------------------------------------------------------------------------------------CATTAG------AGAGATATCAG---------GGAGGCCCA---------------------------------------------TCCGGTTCCCCGAGCAAACAATCCCAACGCGTTGCCAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATGCAGTCTGAG-CAGG----CC-AC-CAGCCTGAAACAAC-----CAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCACTCCTCA-GGGCATGCCTGTTCGAGCGTCAATAGA--AACCCCCCTCACCCT-------CC-TGG?GG???GGGGGAGGTGG-------------GT?G?-??-------TCCCGGCGCCTGGCC---------CACCCC-CCCGAAACGCAT-GGGCCCGAGAGAC-GAC-TGGCTGCG--ACTGACATTCT-AAGCGCT-TTGCAGGC---CTGAACCGGTCCGCA-GTCACGTCGAG------------------------------------CGGTG-------------------------------------------------------------------------------------------------------------------------------------- Tuber_canaliculatum_OSC59072_West_Virginia ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGCAA-CAATCCCAACGCGTTGCC?AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATGCAGTCTGAG-CAGG----CC-AC-CAGCCTGAAACAAC-----CAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCACTCCTCA-GGGCATGCCTGTTCGAGCGTCAATAGA--AACCCCCCTCACCCT-------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_candidum_AY830856_Oregon ---------------------------------------------------------------------------------------------------------------CATTAC---------ACATATATG--------GGACACTAATGT-----------------G-GTCCCTTGACTA-----------AAACCCTCTCTGCGTACCAATCTATGTTGCTTTCCTAGGTGGTTGGTTTCAGCTGCCGTCCAACATTGCCTGCTAGCTCAGTCAATCCGAGTTGTTAACTTGGAGTTTGATCTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACTGATGGGTTA--AGCTTTAATGGGTCAGCGAGCT-TAATTTATATCTATCAGGATCAGCTATGTAGGCCC-C-TGGGAA-----AGGGTCCA--------T{CT}GCAAGTG------------------AATAT-TTCA-ATCAGCTGTCTGAG-TCGG----CC-TA-GTGCCTTATTCTTT-----AAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACA--AACCCG-CTCATAAA--TG----T-TATGGTATTGATGGAAGTGAA------------CTGTT-GCAAC-------TAA-AGTGTG--TGGAT----CACCCC-ATCGAAATACAT-AGGCAGGACAACA-AA--CCTCTGTAG--CTGACTTAGT-AACTGTT-TTCAAGAC---ACAAACCAGTCACTT-GCTAGGTTCTAGC----CTG----GCCTCATTAGA-CCTC-------CATTC----A-----AGATAAATA---CTG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCA----------------------------------------------------------------- Tuber_castellanoi_nom_prov_JT19924_California_paratype ---------------------------------------------------------------------------------------CCGTAGGTGAACCTGCGGAAGGATCATTAC--------ATATGCCTG---------GGATGCCTT---------------------------------------------TAAGGTTCCCTGAGTA--AACCCATATTTAAACCCTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-ACAA-ACTTGTAGTCTGAG-AAGA----CT-AT-GTGATGTAATTATA-----TAATATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAACCAGACCC-TTCACGTT--T----AA-CGTGGTATTGATGGAAGTGGG------------GCAGA-AA-----------------TTGCTC--------TACTCC-TTCAAAATTGAA-AGGCCGGAAAAAT-GA--TCTCGGTG--ACAGACTTGCA-GAGTGTT-GTGAAAAC---CTAAATTAGTCTTGA-GCGAGGTCGAG-T----CCG---TGCTTC--TGGA-CCCC-------CATCC----A-----ATGTAAAC----------------------------------------------------T-ATTAGA-------------------------------------------------------- Tuber_castellanoi_nom_prov_JT28069_California_holotype -------------------------------------------TCTTGGTCATTTAGAGGAAGTAAAA-GTCGTAA-CAAGGTTTTCCCGTAGGTGAACCTGCGGAAGGATCATTAC--------ATATGCCTG---------GGATGCCTT---------------------------------------------TAAGGTTCCCTGAGTA--AACCCATATTTAATCCCTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-ACAA-ACTTGTAGTCTGAG-AAGA----CT-AT-GTGATGTAATTATA-----TAATATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAACCAGACCC-TTCACGTT--T----AA-CGTGGTATTGATGGAAGTGGG------------GCAGA-AA-----------------TTGCTC--------TACTCC-TTCAAAATTGAA-AGGCCGGAAAAAT-GA--TCTCGGTG--ACAGACTTGCA-GAGTGTT-GTGAAAAC---CTAAATTAGTCTTGA-GCGAGGTCGAGTC----CCG---TGCTTC--TGGA-CCCC-------CATCC----A-----ATGTAAAC-TATTAG-AGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_cf_borchii_China ---------------------------------------------------------------------------------------------------------------CATTAC----TAAACAATGTGCG---------GGATATCCC----ACCGGGGA------------CTCCTTAGCA------A----AACACATCCATGAGTACCCTCCCATGTTGCTTCCCCAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGTGG--CCACTGCTGCCAGCT-CTGTCCTC---TAATAC---------AGGATCGTGGGTTGAGGTGT-C-TGGGGA-----AGGGCCA---------ACTGTCAAA----------AC--TTTTG---A-ACCA-ATTTGTTGTCTGAG-AAGG----CC-AT-ATGCCGCAA-TATT--TAAAAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAA--AACCCC-CTCACAGA--T----AA-TGTGGTATTGGTAGAAGTGG-------------GTAGT-AC-T-AAC-----AGTGCTTTGTCC--------CACTCT-ACCAAAATTAAT-AGGCCAGAAAAGT-GAA-CTTGGGTA--ACAGACTCTCA-GAGTGTT-TTAAAATG---CTAAACTAGTCTTA--TCCAGGTTGGAAT----CTG---AGCCAC--TGGA-CCCC-------CATTT----A-----GTCCAAAA-CAGAGA-G----------------------------------------------------------------------------------------------------------- Tuber_dryophilum_GB35_Italy ---------------------------------------------------------------------------------------------------------------CATTAC-----A---TATGTCCG---------GGATGTCCA----A?GGGG--------------CTCCCAAGC?------G----AACACATC?ATGTGTACACTCCCATGTTGCTTCCCCA?A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGTGG--CCACTGCTGCCAGCC-CTGCCCTT---CA---T---------GGCATTTCGGGTTGAGGTGT-C-TGGGGA-----AGGGTCC---------AATATC-AA----------AC--TTTTG---A-ACAA-ATCAGTTGTCTGAG-AAGG----CC-AT-CCGCCGCAA-ATTT--TAAAAATATATTAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGTCTGTTCGAGCGTCACT-AA--AACCGC-CTCACATA--T----AA-TGTGGTATTGGTAGAAGTGG-------------GTAGT-GC-T-AAA-----AGCACCTTGTTC--------TACTCT-ACTGAAATGAAT-AGGCCAGAAAAGT-GAA-CCATGGTA--GTAGACTCTCA-GAGTGTT-TTAATATA---CTAAACTAGTCTTA--GCCAGGTTGGAAT----CTG---AGTTCC--TGGA-CCCC-------CATTT----A-----GTCTAAAT-AAGAGA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_dryophilum_GB37_Italy ---------------------------------------------------------------------------------------------------------------CATTAC-----A---TATGTCTG---------GGATGTCCA----ATGGGG--------------CTCCCAAGCA------A----AACACATCCATGTGTACACTCCCATGTTGCTTCCCCAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGTGG--CCACTGCTGCCAGCC-CTGCCCTT---CA---T---------GGCATTTCGGGTTGAGGTGT-C-TGGGGA-----AGGGTCC---------AATATC-AA----------AC--TTTTG---A-ACAA-ATCAGTTGTCTGAG-AAGG----CC-AT-CCGCCGCAA-ATTT--TTAAAATATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACT-AA--AACCGC-CTCACATA--T----AA-TGTGGTATTGGTAGAAGTGG-------------GTAGT-GC-T-AAA-----AGCACCTTGTCC--------TACTCT-ACTGAAATGAAT-AGGCCAGAAAAGT-GAA-CCATGGTA--GTAGACTCTCA-GAGTGTT-TTAATATA---CTAAACTAGTCTTA--GCCAGGTTGGAAT----CTG---AGTTCC--CGGA-CCCC-------CATTT----A-----GTCTAAAT-AAGAGA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_excavatum_BM100_Spain ----------------------------------------------------------------------------------------C?TCTGTG--------------------------------------------------------------CGGT--------------TCCCGGGTTC------------?AACC-CTCCGAGTACCCATCCATGTTGCTTCCCCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGGCAG--TCCTTGCTGCCCGTC-T--CCCTC---CATGTC---------TGGTCGTGGGATGGAGGTGT-C-TGGGGA-----GGGGTCC---------AAA--CAGA--------------AACTCTTGT-GAAC-ACAGGCAGTCTGAG-CGGGC---CC-AT-GTGCCCTGT-GAAT--ATTGAACAAGTT-ATAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAC--AACCTC-CTCACGCA--C----CC-CGTGGTATTGGTGGAAGCTAG------------CCGTG-GG-CCATCTCGGCTGCGGCGC------------TGCTCT-GCTGAAATGCAT-AAGCAGGACAACT-GGG-CCTCAGCG--AGTGACTTAGTAAAGTGTC-ATCAAGAC---CTAGAGCAGTCATCA-GCTATGGCTTG-C----CCTGCCCACCCGGACA---CTCC-------CATCC----G-----GCGTGAAC---CCTT-GGTTGACCTCGGATCAGGTAGGCATACCCGC----------------------------------------------------------------------------- Tuber_excavatum_OSC80639_Italy -------------------------------------------------------------------CATTAAAAA-GTATCGGGACCCCCATATC--------------------------------------------------------------CGGTC--------------CCCGAGCTCC-----------AAACCCCTCCGAGTACCCATCCATGTTGCTTTCCCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCAGC--CATTGCTGCCTGTC-TG----AC---CATGCCC---------GGTCACAGGACAGAGGTGC-C-TGGGGA-----GGGGCTC---------AAA--CAGA--------------AACTCTAGT-ACAC-ACAGGCTGTCTGAG-TGGGC----C-AT-GTGCCCTGC--AAG--ATTGAACGAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGCATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAC--AACCTT-CTCACGGAT-C----CC--GTGGTAGTGGC?GAAGCTCCA-----------CTGTG-CC--CCTCTGGGCTGCGGTGCA------------GCTCC-GCTGAAATGCAT-AAGCAGGACAAGT-GGG-CCTCAGCG--AGTGACTTAGTAA-GTGTC-TTGAAGAC---GTAGAGCAGTCAGCA-GCTAGGCCATG-C----CCTGCCCACCAGGACTC--CTCCCC-----CATCT----G-----GTGTGAACT---CTT-GGTTGACCTCGGATCAGGTAGGCATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATT-GCCTCA-TA------------------- Tuber_ferrugineum_MA2721_Italy --------------------------------------------------------TTAGAGGAAGTAAAAGTCGT-AACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATTTG---------TTTATG--------GGACACAAA-------------------AGTGTTCTCTGATAC-----------AAACCCTCTCTGTGTACCAATCCATGTTGCTTTCCCAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTTGGTTT--CAGTTGATGTCCAAT-CCTGCATG---C-TAGCTGAGTTAAT---ATCA-CTAAGCGGGTCC-C-TGGGAA-----AGGGCC----------TTACCAATG----------------CAAACAT-TTGA-ATCAGCCGTCTGAG-TTGG----CC-CA-GTGCCGCATTATTTG-----AATAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCA--AACCCG-CTCATAAA--T----AT-TATGGTAATGATGGAAGTGAAG------------TGAG-GAC----------AGTAATGTGCCTCGGT----CACCCC-ATTGAAATGTAT-TGGCAGGACAATT-AA--CCTCTGCA--ATGGACTTAGT-AACTGTT-TTGAAGAC---ATCAATCAGTCAATT-GCGAGGTTCTGGC----CTG----GCCCCGATGGA-TTTC-------CATCA----A-----AGATGAAC---TCTG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG------------------------------------------------------- Tuber_foetidum_AJ557544_Hungary --------------------------------------------------------------------------------------------------------------TCAATATT-----TGGGGTGCTTGACACTGGC----TCCCAATA-AAACCCATCCATGAGTACTCTGC-----------------------------------------CATGTTGCTTCCCCAGGCCAGTGGCCACTGCTGCCAGCCAGGCCGTTATTCGGTCACTTGGTTGAGGTGCCTGGGGAAGGGCCAATTAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTTTACATT---------------------------------------AA--CTTACTGTCTGAG-AAGG----CC-AT-GTGCCGTAATCTTT-----AAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAA---ACCAG-ATCACCAA--G----AG-TGTGGTATTGGCAGAAGTGG-------------GTGGG-AC-------TATAAGGGA---CCCTTC------CACTCT-GCTGGAATGAAT-AGGCTGGAAAAGTAGAT--CATAGCA--ACAGACTTTCA-GAGTATT-TTGAAATG---CTAAATTAGTTTGAA--GCTGATCGGAAC----CCAGGCCAT-----TAGA-CCCC-------CATCC----T-----GTGTAAAG-CAGTAA-GG---------------------------------------------------------------------------------------------------------- Tuber_formosanum_FJ176917 --------------------------------------------------------------------------------------------------------------------T----AA---ATACTTTG---------GGATACCAT----TGTGTA--------------TTCCTGAACA------C-----AAACCTCTCTGCGTATTACTCCATGTTGCTTCCACAGGTTAAGCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATGCTGGCAC-C-TGTGGG-----AGAT-CT---------TCACATTAA----------CA--GAGTA---C-TTGA-TTATGCAGTCTGAG-CTGG----CC-AT-GTGTCAGAT----T--T--ACTGAAGTA-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTACA--CACCTT-ATCACAAT--A----TT-TGTGGTCTTGGCAGGAGTGAA------------TTGCT-GG-T-------CTACGGAAGTATTCCAGCAGTACACAAT-GCTAAAAAATAT-GGGAAGGTTACCA-GA--TATGAACA--ACAGACTTTGT-AAATGGT-TGTAGGAC---CTAGATCAGTCACAA-GTCATGTCTGGTC----CCTTA---CCTT-AAGGA-CCCC-------CATCC----T-----AGATGAAC---TATG-G----------------------------------------------------------------------------------------------------------- Tuber_fulgens_M2435_Italy ------------------------------------------------------------------------GTAA-CAAGGTTT--CCGTAGGTGAACCTGCGGAAGGATCATTAA----AA---AATGGTTG---------GGACCCCCCAC-ATAAGGT--------------CCCCGAGCCC------------AAACCTCCCTGAGTACCAATCCATGTTGCTTCCCCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCAG--CCATTGCTGCCCGTC-CGGCCGTT---CCTG------------GGTCACAGGACGGAGGTGC-C-TGGGGA-----GGGGTCC---------AAAAGCAGA--------------AACTCTGGT-GCAC-ACATGCTGTCTGAG-TTGGTGGGCC-AT-GTGCCCGGT-TA----ATTGAATTATTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAGC--AACCAT-CTCACGGA--T----CC-CGTGGTCTTGGTGGAAGCTTC------------CTGCG-GC-CCCT-TTGGCTGCAGCAA------------AGCTCC-GCTGAAATGTAT-AAGCAGGACAAAC-AGG-CCCCGGCG--AGTGACTTAGT-AAGTGTC-GTGAAGAC---GTAGACCAGTCAGCA-GCCAGGCCTTG-C----CCTGTTCACCCAGACACCCCCCC-------CATCT----G-----GTGTGATC---TCTT-GGTTGACCTCGGATCAGGTAGGCATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_furfuraceum_FJ176920 -------------------------------------------------------------------------------------------------------------------AT---------ATATACATT--------GGACACTATT-------------------GTGCTCCATGATCT-----------AAACTCCCTCTGTGTACCAATCCATGTTGCTTTCCCAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCGG---------------------------------G------TC----------------AT---C---TGGGAA-----AGGATC------------TCTTAAAAC--------------CGAATCAATTGA-ATCAGCTGTCTGAG-TTGG----CC-CA-GTGCCATATATGGTTT---AAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCA--AACCCA-CTCATAAA--T----AT-TGTGGTATTGATGGAAGTGAA------------CTGAG-TCA----------AACAATGTACTTGGGT----CACCCC-ATTGAAATGCAT-AGGCAGGACAATA-AA--CCTCTGCA--ATGAACTTAGT-AACTGTC-TGAAAGAC---ACAAACCAGTTTGTT-GTTGGGTTCAGAC----CTG----GCTTCCATGGA-CCTC-------CATCC----A-----AGACAAAT---TCTG-GGTTGACCTCGGATCAGGTAGGGATACCC------------------------------------------------------------------------------- Tuber_gennadii_BM667_Spain -------------------------------------------------------------------------------------------------------------------------------------G---------GGTGGTC?TGA-CTCCGTGGTGGGTCGGAGCCGCCCCCTTCAT------C----AAACACTTCCCGCGTACCTCTCCATGTTGCTTCCCCGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCGGCCTTCTGCCGCCCGTCC-C--GACGC---CTGGCC-----------GTCCGGTGACGGAGGCGC-C-CGGGGG-----AGGCCCA---------CCGACAAAA----------CG--CTACAGAGC-CGAC-AAGTGGAGTCTGAC-AGGG----CC-TG-GTGCCCGAT---GG--TGCAAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCACTCCTCA-GGGCATGCCTGTCCGAGCGTCACAGAAATACCCCA-CTCACCAGCCT----TT-GGTGGTCTTGGCCCAGGTGGA------------TTCAG-GGGGCCGCCAAGTGCGG-------TCCAGTC--CACCGC-GCCGAAATGCATATGGCCGGGCAGCC-GG--TGCCGGTG--ACTGACTTAGT-AATGGGT-GCCGCAGG---GCAAACCAGTCAGGA-GCCGTCTCGAGCC----CCG---AGCCCAGGGAAGGCCCCACGTGG-CCCCC----C-----GAAAGAGAGATCATG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_gennadii_JT9627_Spain_paratype ---------------------------------------------------------------------------------------------------------CATTAGTATTAT----ATCTGTGTGCCGG---------GGTGGTCATGA-CTCCGTGGTGGGTCGGAGCCGCCCCCTTCAT------C----AAACACTTCCCGCGTACCTCTCCATGTTGCTTCCCCGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCGGCCTTCTGCCGCCCGTCC-C--GACGC---CTGGCC-----------GTCCGGTGACGGAGGCGC-C-CGGGGG-----AGGCCCA---------CCGACAAAA----------CG--CTACAGAGC-CGAC-AAGTGGAGTCTGAC-AGGG----CC-TG-GTGCCCGAT---GG--TGCAAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCACTCCTCA-GGGCATGCCTGTCCGAGCGTCACAGAAATACCCCA-CTCACCAGCCT----TT-GGTGGTCTTGGCCCAGGTGGA------------TTCAG-GGGGCCGCCAAGTGCGG-------TCCAGTC--CACCGC-GCCGAAATGCATATGGCCGGGCAGCC-GG--TGCCGGTG--ACTGACTTAGT-AATGGGT-GCCGCAGG---GCAAACCAGTCAGGA-GCCGTCTCGAGCC----CCG---AGCCCAGGGAAGGCCCCACGTGG-CCCCC----C-----GAAAGAGAGATCATG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_gennadii_M1904_Italy ---------------------------------------------------------------------------------------------------------------CATTAA-------TATTATTCTGTGTGAGGGGGGAGGCCATGA-CTCCGCGGCGGGTCGGTGCTTCCTCAATCTT-----------CAATCACCCCTGTGTACCTCTCCATGTTGCTTCCCCGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCGGCCATTGCCGCCCGCACC-CGG?CCGC---TTG------------CGGTCCGGGGTCGGAGGTGG-C-CGGGGG-----AGGGCCAACCACGAAACTCTGCAAA----------------------G-CCGA-CCGTGCAGTCTGAC-CGGG----CC-TC-GCGCCCGAAGCTAC-----AAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCACTCCTCA-GGGCATGCCTGTCCGAGCGTCACAGAA--AGACCCCCTCAGCAGCCTTTGGTT-GGTGGTGTTGGCCGGCGTGGA------------GTGGG-ACGGCCGTCGTAGGCGTGCGCGTCCCCACTT--CACCCA-GCCGAAATGCATATGGCCGGGCAGCC-GG--TGGCGGTG--ACTGACTTAGT-AACAACT-GCCGCAGG---GCATACCAGTCAGCA-GCCGTCCCGAGCC----CCG---AGCCCTGGGAGCACCCCCGTGTG-CCTCC-----------CGCAAAC------------------------------------------A-CTTACGG----------------------------------------------------------------- Tuber_gibbosum_JT26632_Washington ---------------------------------------------------------------------------------------CCGTAGGTGAACCTGCGGAAGGATCATTAA--------ATATACCTG---------AGATGCCTT---------------------------------------------TAAGGCTCTCTGAGTA--AACCCATATTAAACACTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-ACAA-ACTCATAGTCTGAG-AAGG----CT-AT-TTGCCGTAATTATA-----TAATATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAACTAGACCC-CTCACGTT--T----GA-CGTGGTATTGATCGAAGTAAG------------GCAGA-AA-----------------TTGCTT--------TACTCC-TTCAAAATTGAA-AGGCCGGAAAAGT-GA--TCTTGGTG--ACAGACTTGCA-GAGTGTT-GTGAAAAC---CTAAATTAGTCTTCA-GTCAGGTCAGG-T----CCG---AGCTTC--TGGA-CTCC-------CATTC----A-----ATATAAAC----------------------------------------------------T-ATTAGA-------------------------------------------------------- Tuber_gibbosum_JT30580_Oregon ---------------------------------------------------------------------------------------CCGTAGGTGAACCTGCGGAAGGATCATTAA--------ATATACCTG---------AGATGCCTT---------------------------------------------TAAGGCTCTCTGAGTA--AACCCATATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACACTTA---T-ACAA-ACTCATAGTCTGAG-AAGG----CT-AT-TTGCCATAATTATA-----TAATATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAACTAGACCC-CTCACGTT--T----GA-CGTGGTATTGATGGAAGTAAG------------GCAGA-AA-----------------TTGCTT--------TACTCC-TTCAAAATTGAA-AGGCCGGAAAAGT-GA--TCTTGGTG--ACAGACTTGCA-GAGTGTT-GTGAAAAC---CTAAATTAGTCTTCA-GTCAGGTCAGG-T----CCG---AGCTTC--TGGA-CTCC-------CATTC----A-----ATATAAAC-----------------------TATTAGA-------------------------------------------------------------------------------------- Tuber_huidongense_DQ478632_China ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCA--AACCCA-CTCATAAA--T----AT-TATGGTATTGATGGAAGTGAA------------CTGAG-TCA----------AACAATGTACTTGGGGT---CACCCC-GTTGAAATGCAT-AGGCAGGACAATA-AA--CCTGTACA--ATGAACTTAGT-AACTGTC-TGAAAGAC---ACAAACCAGTTCCTT-GTTGGGTTACAGAC---CTT----G-CTTCACTGA-CCTC-------CATCC-------------------------------------------------------------------------------------------------------------------------------------- Tuber_indicum_A_GB236_China ---------------------------------------------------------------------------------------------------------------CATTAT----G----ATGCTTTG---------GGATACCGT----TGTGTA--------------TTCCTGAACA------C-----AAACCTCCCTGCGTATCACTCCATGTTGCTTCCATGGGTTAAGCCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTGCTGGTAC-C-TGTGGG-----AGAT-CT---------CCACATTAA----------CA--GAGTA---T-TTGA-TTACGCCGTCTGAG-CTGG----CC-AC-GTGTCAGAT----T--T--ACTGAAGTA-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTACA--CACCTT-ATCACAAC--A----TT-TGTGGTCTTGGCAGGAGTGAA------------TTGCT-AG-T-------CTATGACAATATTCCAGCTGTCCACCAT-GCTGAAAATTAT-GGGAAGGTTACCA-GG--CGTGAACA--ACAGACTTTGT-AAAGGGT-TGCAGGAC---CTGTATCAGTCACCA-GTCATGTCTGGTG----CCT---TACCTT-AGGGA-CCCC-------CATCC----T-----AGATGAAC---TATG-GGTTGACCTCGAATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_indicum_A_GB240_China ---------------------------------------------------------------------------------------------------------------CATTAT----GA---ATGCTTTG---------GGATACCGT----CGTGTA--------------TTCCTGAACA------C-----AAACCTCCCTGCGTATCACTCCATGTTGCTTCCACGGGTTAAGCCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTGCTGGTAC-C-TGTGGG-----AGAT-CT---------CCACGTTAA----------CA--GAGTA---T-TTGA-TTACGCCGTCTGAG-CTGG----CC-AT-GTGTCAGAT----T--T--ACTGAAGTA-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTACA--CACCTT-ATCACAAC--A----TT-TGTGGTCTTGGCAGGAGTGAA------------TTGCT-AG-T-------CTATGAAAATATTCCAGCTGTCCACCAT-GCTGAAAATTAT-GGGAAGGTTACCA-GG--CGTGAACA--ACAGACTTTGT-AAAGGGT-TGCAGGAC---CTGTATCAGTCACCA-GTCATGTCTGGT-----CCT---TACCTT-AGGGA-CCCC-------CATCC----T-----AGATGAAC---TATG-GGTTGACCTCGAATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_indicum_B_GB237_China ---------------------------------------------------------------------------------------------------------------CATTAT----AA---ATACTTTG---------GGATACCAT----TGTGTA--------------TTCCTGGACA------C-----AAACCTCTCTGCGTATTACTCCATGTTGCTTCCACAGGTTAAGCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATGCTGGCAC-C-TGTGGG-----AGAT-CT---------TCACATTAA----------CA--GAGTA---C-TTGA-TTATGCTGTCTGAG-CTGG----CC-AC-GTGTCAGAT----T--T--ACTGAAGTA-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTACA--CACCTT-ATCACAAT--A----TT-TGTGGTCTTGGCAGGAGTGAA------------TTGCT-GG-T-------CTATGGAAGTATTCCAGCCGTACACAAT-GCTAAAAAATAT-GGGAAGGTTACCA-GA--TATGAACA--ACAGACTTTGT-AAATGGT-TGTAGGAC---CTAGATCAGTCACAA-GTCATGTCTGGTC----CCTAAGGACCTT-AAGGA-CCCC-------CATCC----T-----AGATGAAC---TATG-GGTTGACCTCGGATCAGGTAGGAATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_indicum_B_JT29410_Oregon --------------------------------------------------------------------------------------------GGTGAACCTGCGGAAGGATCATTAT----AA---ATACTTTG---------GGATACCAT----TGTGTA--------------TTCCTGAACA------C-----AAACCTCTCTGCGTATTACTCCATGTTGCTTCCACGGGTTAAGCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATGCTGGCAC-C-TGTGGG-----AGAT-CT---------TCACATTAA----------CA--GAGTG---C-TTGA-TTATGCTGTCTGAG-CTGG----CC-AC-GTGTCAGAT----T--T--ACTGAAGTA-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTACA--CACCTT-ATCACAAT--A----TT-TGTGGTCTTGGCAGGAGTGAA------------TTGCT-GG-T-------CTATGGAAGTATTCCAGCCGTACACAAT-GCTAAAAAATAT-GGGAAGGTTACCA-GA--TATGAACA--ACAGACTTTGT-AAATGGT-TGTAGGAC---CTAGATCAGTCACAA-GTCATGTCTGGTC----CCTAAGGACCTT-AAGGA-CCCC-------CATCC----T-----AGATGAAC---TATG-GGTTGACCTCGGATCAGGTAGGAAT{AC}CCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_latisporum_DQ898185_China ----------------------------------------------------AGAGTTTTGTGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACC----A----ATATCTA---------GGGTCTCAT----ATAGGA--------------CTCCTAATCA------A-----ACACATTCCTGTGTATTCTTCCATGTTGCTTTCCCAAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTAG--CCACTGCTGCCAGCC---GATATT---CT----------------AAT--GGTTTGAGGTGT-T-TGGGGA-----AGGGCCAGT---------TATT-AA----------ACC-TTTAT---A-CCAA--TTAGCTGTCTGAG-AAGG----CT-AT-GTGCCCTAA--TCT--TT-AAACATATT-AAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTCA-GGGCATGCCTGTTCGAGCGTCACT-AAC-AACCAT-CTCACAGAG------AA-TGTGGTATTGGCCTGAGTGGGTTGCACTT----GCAGT-GC---AAA------------TCTCA----------CTTG-GCTGAAATGGAT-TGGCCAGACAAGGAGAC--AATGGCAA--CAGACTCTCA-GAGTGTTTTTGAAATG---CTAAACTAGTCTGT--GGCAGGTTGAACT----CTG---AGCTAAA-AGGA-CTGAT-------ATTT----A-----GTGTAAAC-AAGAAA-TGTCGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAATAAGCGGGAGGAAAA------------------------------------------ Tuber_lauryi_nom_prov_JT26987_Oregon ---------------------------------------------------------------------------GTATCAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATAAA---TATATGGGATGCTCAATATGAGTTCTCAACA-AAACACTTTCATGTGTATCCTTCCATGTTG----------------------------------CTTCCTCAGG--CCAGTAGCCATTGCTACCAGCCAGGCCGATCTTCGGTCACTAGGTTGAGGTGCCTGGGGAAGGGTCAATCATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTTTACATTG---------------------------------------A--CTTATTGTCTGAC-AAGG----CC-AT-GTGCCATTATATTT-----AAATATTTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAC--AACCAA--TCACCTTATG-------TGTGGTATTGGCAGATGTGGGTTGAGTAC------AAA-GCT------TAGCAGTGATACTCTCC-------CACACT-GTTGGAATGAAT-AGGCTAGAAAAGTAGAT--CATAGCA--ACAGACTTTCA-GAGTATT-TTGAAATG---CTAAATTAGTTTGAA--GCTGGTCAGAAT----CTAGGCCAT-----TTGA-CCCC-------CATTC----T-----GTGTAGAG-CAGTAA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTTAGTAACGGCGAGTGAAGCGGCA Tuber_liaotongense_DQ478645_China ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCA--AACCCA-CTCATAAA--T----AT-TATGGTATTGATGGAAGTGAA------------CGGAA-CCA----------ATCTATGTGTTCAGGT----CATCCC-ATCGAAATGTAT-AAGCAGGACAATC-AA--CCTGTGCA--ATGGACTTAGT-AACTGTC-TTGAAGAC---ATAAACCAGTTTGTT-GCTTGGTTTTGACT----TA----GCTTCCATGGA-CCTC-------CATCCAAG-AT----A-ATAAAC---TCTG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCA----------------------------------------------------------------- Tuber_liui_DQ898182_China -------------------------------------------------------------TGGAAGTAAAAGT{AC}GTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACA----A----ATGTCTG---------GGATGTCCA----ATCGGG--------------CTCCCAAGTA------A-----ACACATCTATGTGTACTCTTCCATGTTGCTTCCCCAGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTGG--CCACTGCTGCCAGCC-TAGAGCTTTA-CA-------------GGT-TATTGGGTTGAGGTGT-C-TGGGGA-----AGGACCC---------AATATC-AA----------AC--TTTTG---A-ACAA-ATTTGTAGTCTGAT-AAGG----CT-AT-ATGCCGCAACCTTT----AAAACATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAA--AACCTT-CTCACAGAA------AA-TGTGGTATTGGTAGAAGTGGGT-----------GTAGT-ACAC-AAA------GTGCTTTGTCT--------TACTCT-ACTGAAATGAAT-AGGCCGGTAAAGA-GGA-CCATGGTA--GTAGACTCTAG-GAGTGTT-GTATAATG---CTAAACTAGTCTTCA--CCAGGTGTAGATC---CTG---AGCTAAT--GGA-CGCC-------CCCTT----AT----GTCCAAAT-CAGAGA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAATA------------------------------------------------------- Tuber_luomai_JT6003_Oregon_Holotype -----------------------------------------------------------------------------------------------------------------------------------------------------TATCTGGGATACCAAT------AAGGTTTCCCAACCC-----------AACCCCTTACTGTGTACCAATCCATGTTGCTTTCCCAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCTGCCCA--CGCAGTTGTCTCAG-CCAGCCAGCCTTAATGTGTTCCTCTGGTCATAAGCTATATAGGCCA-C-TGGGAA-----AGATTCA----------ATTCAAACATT-------------CTAAGTG----A-ACCAGTCATCTGAG-TAGG----CC-TA-GCGCTATATTATTGT----AAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACCCCTTGGTATTCCTTG-GGGTATGCCTGTTCGAGCGTCACTATAG--ACCCT-CTCATAAA--T----AT-TATGGTACTGATGGATGTGAA-------------TCAG-GAT---------TGTGAATACACCTGTAT----CACCCC-ATTGAAATGTAT-GAGTAGGACAATC-CA--CATCTGTA--ATAGACTTAGT-AAATGTTCTTGCAGAC---ATAAACCAGTCTCAT-ACAGGGTGAAGTC----CTGT-----CGCTATGGATCCCC--------ATTC----A-----ATATGAAC---TCTG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAA----------------------------------------------- Tuber_lyonii_GA21_Georgia ---------------------------------------------------------------------------------------------------------------CATTAT----GC---ATA-TCTG---------GGATACCAA----GAGGGT--------------CCCTGAA-TC------C----ATCTCCTCACTGTGTACCAATCCATGTTGCTTTCCCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGC-C-TGGGAG-----AGGT-CC---------AACCCAACA----------CC--AAT-A---A-TTGA-GTCCGCAGTCTGAG-TAGG----CC-TA-GCGCCTTGAATGTT--T--GAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCTTGGTATTCCTTG-AGGCATGCCTGTTCGAGCGTCACTACA--AACCCT-CTCATAGT--T----AT-TATGGTATTGATGGAAGTGAA------------CTGTG-T----------CTATTTATGTACTCACAC----CACTCC-ATTGAAATGAAT-AGGCAGGACAAGT-GA--CAACTGCA--ATGGACTTAGT-AAATGGT-TTTCAGAC---ATGGACCAGTTCTTT-GCTATGTTGTACA----GCC---TGTATCCATGGA-CTCC-------CATCC----A-----GTAAGCAC---CTTG-GGTTGACCTCGAATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-A------------------------------------------------------------- Tuber_lyonii_OSC58244_Texas ------------------------------------------------------------------------------------------------------------------CAT---------------------------------TA----TAAGGT--------------TCCTG-A-TC------C----ATCTCCTCACTGTGTACCAATCCATGTTGCTTTCCCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACCC-C-TGGGGG-----AGGT-CC---------AACCCAACA----------CT--GAT-A---A-TTGA-GTCTGTAGTCTGAGTTAGG----CC-TA-GAGCCTAGAACTTT--T--AAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCTTG-GGGCATGCCTGTTTGAGCGTCACTACA--AACCCT-CTCATAGA--T----AT-TATGGTATTGATGGAAGTGAA------------CTGTG-T----------CTACTGGTGTACTCGCAC----CACTCC-ATCGAAATGAAT-AGGCAGGATAGGT-GG--CAACCGCA--AGCGACTTGAT-AAACGGT-TTTCAGAC---ATGGACCAGTCCTTT-GTTATGTTGCGCA----GCC---TGTATCTATGGA-CTCC-------CATCC----A-----CTAAGCAC---TTTG-GGTTGACCTCAAATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_macrosporum_JT13362_Italy ------------------------------------------------------------------------------------------------------------------------------------TTC--------AGGT-----------------------------TCCCCGAGCA-----------AACAACCCCATGTGTACACTTCCATGTTGCTTCCCCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCGG--CCACTGCTGCCAGCC-CGACCCCT---CCGGCG--------GTCGACCACGGGCTGAGGTGC-C-TGGGGG-----AGGGCCC---------ATCCCCAAC----------------ACGTCGC-TCAT-CAAAGCAGTCTGAG-CAGG----CA-GT-CGGCCTGAATCAAG-----TAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCTCA-GGGCATGCCTGTTCGAGCGTCAATACA--AACCCCCCTCACCCTCCT-------GGTGGTGCTGGCGGAGGTGGGTCGCCCTCCCGGCGACA-GGCC-----------------------------CACCCC-GTCGAAACTCAT-GGGCCCGAGAGCC-GA--CGGCTGCG--ACTGACATTCC-AAGCGCT-TTGAAAGC---CAGAACCAGTCCGCG-CCGAAGTCTCG------CGG---TGCCCCACTGGGCCTCC-------CGTCC------------AGCGCAACACTCTGGGTT-------------------------------------------------------------------------------------------------------- Tuber_maculatum_AM406673 ------------------------------------------------------------------------------------------------------------------------------------------------------------------TCC------------------------------------------------------CATGTTGCTTTCCCAGGCCAGCGGCCACTGCTGCCAGCCATGCCGTTTTTCGGTTACATGGTTGAGGTGCTTGGGGAAGGGCTAATTATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTTTACTTC---------------------------------------AC--CTTATTGTCTGAG-AAGG----CC-AT-GTGCCGTAATCTTT-----AAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCGCAAAA---ACCCAGATCACCTA--G----AG-TGTGGTATTGGCAGAAGTGGCC-----------G--GG-GC-------TATCAGTGCTGCTGC---------CACTCT-GCTGGAATGAAT-AGGCTGGAAAAGTAGAT--CATAGCA--ACAGACTTTCA-CAGTATT-TTGAAATG---CTAAATTAGTTTGAA--GCTGATCGGAAC----CTAAGCCAT-----TTGA-CCCC-------CATCC----T-----GTGTGAAG-CAGTAA------------------------------------------------------------------------------------------------------------- Tuber_magnatum_JT19460_Italy -------------------------------------------------------------------------------------------------------------------------------------------------------AGG-ATGCGT---------------CTCCGAATCC------T----GAATATCTCCTGTGTACCATGCCATGTTGCTTCCCCAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCACGGTCACTGTGCCGC-C-TGGGAG-----GAGGGCA---------CAGTCCCAA----------AAACTACTGTC-A-TCCT-ACCAGCAGTCTGAGAAAGG--GCCC-ATCAGGCCTGACAAACT--T--AAACA-GTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCTCA-GGGCATGCCTGTTTGAGCGTCACTGAA--AACCCA-CTCACGGA-AT----CA-CGTGGTGCTGATGGAGGTGGC------------TTGGT-AC-CGCAGCGGCGGTGGCCGGGTC---------CACCCT-GTCGAATTTCAT-TGGGAGGATGACG-GAC-CCCCGGCT--GCTGACTTTGTAGACATCGCCTTGAAAT---GCGTGCTAGTTGCCA-GTCAGGCCCGGTC----CTG---CACGCTTGAGGA-TCCC-------TGCCA----TGGGATCCACTGTC-CAACTG-GGTT-------------------------------------------------------------------------------------------------------- Tuber_malacodermum_JT32319_Spain ---------------------------------------------------------------------------------------------------------------CATTAT----GC---ATC-TAGG---------GGATACCAA----TGAGTT--------------CCCTGAAGTG------A----AAGCCCTCCATGTGTACCAATCCATGTTGCTTTCCCAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTGGTCACGGGTCGCCAGCCATCGCTCAATGGTGTCCACTGGTTGAGTGCATCCGGAGGCTAAAGTGCTCC----GTAGAATCCGTTCCTTCAGTTA--CTCGGTTGAAAAACG-CCGCCATT---TAGTCC---------GTAGGGATCCCCGTGAGCAC-C-TGGGAG-----AGGG-CC---------TATCCAAAT----------CG--ATTAT---T-TTTG-ATCAGCTGTCTGAG-TTGG----CC-AA-GTGCCATAT-TCTT--T--GAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACA--AACCCC-TTCATA-A--T----AT-TATGGTATTGATGGATGTGAA------------CTGTG-G----------CAACCAGTGTCCCTGGAT----CACCCT-GTCGAAATGTAT-GGGCAGGACAATC-AA--CCTCTACA--ATAGACTTAGT-AACTGTT-CCAAAGAC---AAGAGACAGTCCCTT-GCAGGGTTGTG-G----CCT---CGCCTCCATGGA-CCTC-------C------------------------------------------------------------------------------------------------------------------------------------------ Tuber_melanosporum_GB200_Italy -------------------------------------------------------------------------------------------------------GCGGAGGTCATTAT----GA---ATGCTTTG---------GGATACCGT----TGTGTA--------------TTCCCGAACA------C-----AAACCTCTCTGCGTATCACTCCATGTTGCTTCCACAGGTTAAGTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATGCTGGCAC-C-TGTGGG-----AGAT-CT---------CTATGTTAA----------CG--GAGTA---T-TTGA-TTGTGCTGTCTGAG-CTGG----CC-AT-GTGTCAGAT----T--T--AGTAAAGTA-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTACA--CACCTT-ATCACAAA--G----TT-TGTGGTCTTGGCAGGAGTGAA------------TTGCT-AG-T-------CTATCAAAATGTTCCAGCTGTACACTCT-GCTAAAAATTAT-GAGAAGGTTACCA-GG--CATGAACG--ACGGACTTTAT-AAACGGT-TATAAGAC---CTGGATCAGTCACAA-GTCTTGTCTGGT-----CCT---TACCTT-AAGGA-CCCC-------CATCC----T-----AGATGAAC---TATG-GGTTGACCTCGAATCAGGGAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_menseri_nom_prov_JT11661_Oregon --------------------------------------CGCTTTCCTCT{GT}G{AG}TCATTT{AT}AGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACA----A----ATGACTG---------GGATGTCCT----ATCGGA--------------CCCCCAAGCA------A-----ACACATCTATGTGTACTCTGCCATGTTGCTTCCCCAGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTGG--CCACTGCTGCCAGCC-CAGCCCCTA---A---T---------GGGTTCCTGGGTTGAGGTGT-C-TGGGGA-----AGGGCTC---------AATATC-AA----------AC--TTTTC---A-ACCC-ACTAGTCGTCTGAG-AAGG----CC-AT-GTGCCGCAATATTT-----AAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAA--AACCGA-CTCACATA--TCG-----TGTGGTATTGGTAGAAGTGGA-------------TAGT-AC-T-AAC-----ACTACTTTGTCT--------TACTCT-GCTGAAATGAAT-AGGCCAGAAAAGT-GGA-CCATGGTAA--TAGATTC-CAGGAGTGTT-TTAAAATG---CTATACTAGTCTTAT--CCAAGTCATATT----CTG---AGCCACT--GGACCCCC-------CATTT----A-----GTCCAAAC-AACAGT-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAATAAGCGGAGGAAG-------------------------------------------- Tuber_mesentericum_CW105_Sweden ---------------------------------------------------------------------------------------------------------------CATTAC--------AACAGCCGG---------GGACGCCCCAT-GGGCGGCA-------------CCCCTGAGCA---------CCAAACCACAGCTGCGTACCATGCCGAGTTGCTTCCCCGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGGCGG--------CCGTCGCCG-CCCGCCGT---GCGAGTCGCCATGTTGGCTCGCCCGGCGGAGGCGC-C-CGGGGGTGGTTGGGGTCC---------AGCCCCGACGTGAAAAACGCT----TTGGACG-GATA-ACGAGAAGTCTGAACCCGGCGCCCTCTTGGGGCCGCCAACCTG-------AAAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGGGGCATTCCTCA-GGGCATGCCTGTCCGAGCGTCAGTGCA--AACCCC-CTCACGGAAAC-----C-CGTGGTCCTGGTGGAGGTGGA---------------GA-GAGTCGGGCTCCCCAGCCCGGCCGC--------CACCCC-GCCCAAATGAAA-GGGGAGGAACGCG-----TGTCCGCGGACCCGACTTGGT-AGACGTTGTGATAAGC---GTAGAGCAGTCGTGC-GCCGTCCACGGT-----CCCTCCCGCCTC----GAGCCCC-------CAC----------------------------AGTGGGCCGCCGA--------GGGTCTTCTCAGG-------------------------------------------------------------------------- Tuber_multimaculatum_OSC62169_Spain_paratype ---------------------------------------------------------------------------------------------------------------CATTAA---------TATATTTG---------GGATACCCT----TACAGG-T------------TCCCTATCCT------T----TAAACCTCTCTGTGTACCAATCCATGTTGCTTTCCTCAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAGCAG--CCACTGCTGCCTGTA-TAGTTCAC---AA---T---------GGGCTAATATACAGAGGTAT-C-TGGGGG-----AGGGTCT---------TCTTATAAC----------TC--ATATT---G-TTAA-CCATGCAGTCTGAG-TTGG----CT-GA-ATACCATACATATC--T-TGAATAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTCA-GGGCATGCCTGTTCGAGCGTCACTACA--AACCTCACTCACAAC--A----AT-TGTGGTAATGGTAGGAGTGGA------------TTATT-A--------------TGACAAAGTCACCAGTCACACCCT-ACCGAAATGCAT-TGGGCGGACTTTT-AGG-CTTAGTGA--AGAGACTTAGT-ACATGTT-CAAAGAAT---ATATAATAGTCTCAT-GCTAGGTTAGGTC----C-----TGCCTGCCTGGA-CCTC-------CATCT----G-----GTTTATAT---ACTG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_nitidum_BM105_Spain ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-ATCAGCAGTCTGAG-TTGG----CC-CA-GTGCCGTCT-TCTT--T--GAATAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACA--AACCCC-CTCATATG--T----AT-TATGGTATTGATGGATGTGAA------------CTCAG-G----------CCTAGAATGCACCTCAGT----CACCCC-GTCGAAATGCAT-AGGCAGGACAATA-AA--CCTCCGCA--AGGGACTTAGT-AAATGTT-ATGAAGAC---ATAAACCAGTCCGTC-GCTCGGTTCTG-T----TCT---GGCCTCCACGGA-CCTC-------CATCC----G-----ACATGAAA---TCTG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTT--------------------------------------------------------------------- Tuber_oregonense_nom_prov_GB284_Oregon_holotype ---------------------------------------------------------------------------------------CCGTAGGTGAACCTGCGGAAGGATCATTAC-------CATATCACTG---------GGATGCCCT----GATGGG----------------------------------------CTCATTTAGTA--AACTCATATTAAACACTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-ACAA-ACTTACAGTCTGAG-AAGG----CC-AT-AGGCCGTAATCATA-----TAATATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAACTATACTT-CTCACGTC--T----GA-CGTGGTATTGGTAGAAGTGGT------------GCAGA-AA-----------------TTGCTC--------CACTCC-TCTAAAATTGAA-AGGCCGGAAAAT--GA--TCTCGGTG--AGAGACTTGTA-GAGTGTT-ATGAAAAC---CTAAATCAGTCTTCA-GCCAGGTTGAG-T----CCG---TGCTTC--TGGA-CCCC-------CATCC------------------------------------------------------------A-CAGTAACAT-ATTAAA-------------------------------------------------------- Tuber_oregonense_nom_prov_JT27985_Oregon_paratype ---------------------------------------------------------------------------------------CCGTAGGTGAACCTGCGGAAGGATCATTAC-------CATATCACTG---------GGATGCCCT----GATGGG----------------------------------------CTCATTTAGTA--AACTCATATTAAACACTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-ACAA-ACTTACAGTCTGAG-AAGG----CC-AT-AGGCCGTAATCATA-----TAATATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAACTATACTT-CTCACGTC--T----GA-CGTGGTATTGGTAGAAGTGGT------------GCAGA-AA-----------------TTGCTC--------CACTCC-TCTAAAATTGAA-AGGCCGGAAAAT--GA--TCTCGGTG--AGAGACTTGTA-GAGTGTT-ATGAAAAC---CTAAATCAGTCTTCA-GCCAGGTTGAGTC----------CGTGCTTCTGGA-CCCC-------CATCC------------------------------------------------------------A-CAGTAACAT-ATTAAA-------------------------------------------------------- Tuber_pacificum_EU837241_Oregon ------------------------------------------------------------TG{AG}AAGTAAAAAGTCGTAACAAGGTTTCCGTAGGTGA{AC}CCTGCGGAAGGATCATTACAA---A----ATGTCTG---------GGATGTCCACT---TCGGAC-------------CCCCCAAGCA------A----AACACATCCATGTGTACTCTCCCATGTTGCTTCCCCAGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTGG--CCACTGCTGCCAGCC-CAGTCCATA---A---TC---------GGTTCCTGGGTTGAGGTGT-C-TGGGGA-----AGGGCTC---------AATATC-AA----------ACC--TTTGA--A-CCAATCTTAGTTGTCTGAG-TAGG----CC-AT-CTGCCGCAA--TCT--TTAAAATATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAA--AACCCC-ATCACAGT--T----AA-TGTGGTATTGGTAGGAGTGAACG----------GTACTTGCCT--TA---------CCTTGTCTC--------ACTAT-ACCGAAATGAAT-AGGCCAGAGAAGTGGAC-CCATGGTAA--TTGACTC-CAGGAGTGTGTTTTTTCTAATGCTATACTAGTCTTTA-CCCAAGTCAAGTT----CTG---AGCTAG--CGGA-CCCC-------CATTT----A-----GTCCGAAA-CAGA{GT}AAGGTTGACCTCG{AG}ATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTCA--------------------- Tuber_panniferum_JT12835_Spain -------------------------------------------------------------------------------------------AGGTGAACCTGCGGA{AG}GG{AG}TCATTAA--------ACAAGCTTG---------GGACCCCGGAA-AGG{CT}GG{CG}--------------CTCCCTGCGCGTC--------AAACCACATCTGCGTACACTGCCATGTTGCTTCCCCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGGCGACCGCGCTCGCCCGTCAG-CGTGGCGC---TACGCG---------CCTCGCCTCGTCGGAGGTGC-C-TGGGGGTG---GGGGTCGG--------TACCCTCATCAAGTTTAACCACTGTTTG----------ACCGTCAGTCCGACCAGGTGGAGCC-GCGAGGCCACCGACTCG-----AAATA-GTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCACTCCTCA-GGGCTTGCCTGTCCGAGCGTCAGTGCA--AACCCG-CTCACGGAAGT-----C-CGTGGTTCTGACGGAGGTGGAACGT--------GTTGG-GC---------------TCGCCGCCCGGCCGGCCACCCCAGTCCAAATCAAT-GGGGCGGAGGAAGCGTGGCATCGCCC-----GACTTGGT-AGACGTCTTGATAAGC---GTATGACAGTCGGAA-------------------------GCGGTCAACGGTCC---------CGCCC-------------------------------GCCACGCGTCAGTTGTGGCGCCTTGGC-AT-CTTCATCAGGTTT----------------------------------------------------------- Tuber_pseudoexcavatum_CJ408_China ---------------------------------------------------------------------------------------------------------------CATTAT----T----GATATCTG---------GGATATCTT----TACAGA--------------TTCCCAATTA------C----AA-ACCTCTCTGGTTATTAGTCCATGTTGCTTTCACAAGTTAAGAGACATTCTTGCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAGTTGTAGCTGTCATTCATACTTGGGTAGCAGATCATTACATTGTAA--CCAATTCATGTATGC-TACTACTG---CTTGCG---------CTTTAGTACTATACAGGCAC-T-TGTGAA-----AGGTCTC----------------AA----------CT--AAGCT---T-TAAA-TTATGTGGTCTGAC-TTGG----CC-AA-GTGCCATATCTCTT--A-------AGTG-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCTTTGGCATTCCTTA-GGGCATGCCTGCTCGAGCGTCACAGAA--AACCCC-ATCACAGT--T----CC-TGTGGTCTTGGTATGAGTGGG------------TTGAT-AG-TATGT-----GGAGACATGCTTATAA----CACTCT-ACTGAAATTTAT-AGACAGGATACCG-GA--TATGGGCA--ATAGACTTTGT-AAATATC-CACAGGAT---ATATATCAGTCATGT-GTCATGTTTGGTC----C-----TGATATTATGGA-CTCC-------TATTC----T-----ATACAAAC---ATTG-GGTTGACCTCGAATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_puberulum_AJ969625_Hungary -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGAAGTAAAAGTCGTAACAAGGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTAGGTGAACCTGCGGAAGGA--T--CATTA--CAAAAT----------G--TTATGGGATGTCCTAA-C--GGGCACCCA-AGCAAACACATCC----ATATT-AA----------AC--TTTTGA--A-ACAA--TTACTAGTCTGAT-AAGG----CC-AT-ATGCTGTAAAAATT---T-AAATATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAA--AACCCC-CTCACAGA--T----AA-TGTGGTATTGGTAGAAGTTGA-------------TAGT-AC-T-AAC-----ACTACTTTGTCTG--------ACTCT-ACTGAAATTCAT-AGGCCAGAGAAGT-GGA-CTATGGTAA--TAGACTC-CAGGAGTGTT-TTAAAACG---CTAAATTAGTCTTCT--CCAAGTCATGTT----CTG---AG--CCATTGGACCCCC-------CATTT----A-----GTCCAAAC-AAGAGA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAT{AT}AAAGCGGAGGAAGTTCGAATAAAGTCGTACCGCAGGTTC?CCTAC----------- Tuber_quercicola_AY918957_Oregon ---------------------------------------------------------------------------------------------------------------CATTATGT---------ATCTATG--------GGACTTCAA-------------------AGTGGTCCCTGATTC-----------AAACCCTCTCTGTGTACCAATCCATGTTGCTTTCCTAGGTGGTTGGTCCGAGCTGCCGCCCAACATTGCCTGCTAGTTAAGTCAATCTGAGTTGCTATTATTGAAACTTGGAACCTGACACTTTCCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATAGTGT----G-AGCTTTAATGAGTCAGCAAGCTCAATTG-TTATCCGTCGGGATGAGCTATTCAGGTCC-C-TGGGAA-----AGGGCC----------TATCCAAAGTTAA-------------CACTTC----A-ATCAGCTGTCTGAG-TTGG----CC-GA-GTGCCATATTCTTTG-----AACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCA--AACCCA-CTCATAAA--T----AT-TATGGTACTGATGGAAGTGAACC----------CTG-G-GC-----------ACTAATATGCCTAGAT----CATTCC-ATTGAAATGCAT-AGGCGGGACGATC-AA--CCTTCGCA--ACTGACTTAGT-AACTGTT-TTCAAGAC---AAAAACCAGTCACTT-GCACGGTTCCAGCC---CAG-----CCTCCATGGA-CCTCG------CATCC----A-----AGATGAAT----CTG--GGTGAC-TCG-ATCAGGTAGATACACGGAC----------------------------------------------------------------------------- Tuber_rapaeodorum_AJ557522_Hungary -------------------------------------------AGCTATCATCCACGCGTGGAGCTCTCCATAGGTCGACCTGCAGGCGGCCGCACTAGTGATTCTTGGTCCATTAGAGGAAGTAAAAGTCGTAACA------AGGTTTCCGTA----GGTGAACCTGCGGAAGGATCATTACCAATATCTGGGATGCCAAAGACA-------------CAGGCTCCCGA--TAAAACACATTTATGCGTATCCTCCCATGTTGCTTTCCCAGGCCAGCGGCCACTGCTGCCAGCCATGCCGTTTTTCGGTTACATGGTTGAGGTGCTTGGGGAAGGGCTAATTATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTTTACTTC---------------------------------------AC--CTTATTGTCTGAG-AAGG----CC-AT-GTGCCGTAATCTTT-----AAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCGCAAAA---ACCCAGATCACCTA--G----AG-TGTGGTATTGGCAGAAGTGGCC-----------G--GG-GC-------TATCAGCGCTGCTGC---------CACTCT-GCTGGAATGAAT-AGGCTGGAAAAGTAGAT--CATAGCA--ACAGACTTTCA-CAGTATT-TTGAAATG---CTAAATTAGTTTGAA--GCTGATCGGAAC----CTAAGCCAT-----TTGA-CCCC-------CATCC----T-----GCGTAAAG-CAGTAA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTTAGTAACGGCGAGTGAAGCGGCA Tuber_regimontanum_ITCV909_Mexico_holotype ---------------------------------------------------------------------------------------------------------------CATTAT----G----ATGCTTTG---------GGATACCAT----TATGGG--------------TTCCTGATCA------C----AAAACCTCTCTGCGTATCAATCCATGTTGCTTCCACAGGTCAAGAGAAATTCCTCCTCGACTTGTTTAGCTTTTGACCTTTCGTCATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTATGCAAGCAC-C-TGTGGT-----AGAT-CT---------CAATTTCAA----------CC--AAGTA---T-TTGA-TCATGCTGTCTGAC-CTGG----CC-AT-GTGTCAGAT----T--T--ATTTAAGTG-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTGCA--CACCTT-ATCACAAA--A----TT-TGTGGTCTTGGTAGGAGTGAA------------TTACT-GG-T-------CCATGAAAATGTTCCAGTTGTACACCTT-GCTGAAATTTAT-AGGAAGCTTACCA-GG--CATGAATA--ACAGACTTTGT-AAACGGC-CATAGGAC---CTGAATCAGTCACAA-GTCATGCCAGGT-----CCT---TACCTT-AAGGA-TCCC-------CATCC----T-----ATATGAAC---TATG-GGTTGACCTCGAATCAGGTAGGG------------------------------------------------------------------------------------- Tuber_rufum_GB213_Italy ---------------------------------------------------------------------------------------------------------------CATTAT---------ACATACAGG--------GGACGTTTT-------------------AGCGTTCCCGGACCC-----------AAACCCTCTCTGTGTACAAATCCATGTTGCTTTCCCAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTTGGTGG--CAGCAGCTGTCCAAC-TCTGCCTG---TATAGCTTACCTCTTTGGATGAACTATGCAGGCCC-C-TGGGAG-----AGGGCC----------TATCCTGAG----------------CCAATTA-TTGA-ATTAGCTGTCTGAG-TTGG----CC-CA-GTGCCATTTTCTTT-----AAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCTTG-GGGCATGCCTGTTTGAGCGTCACTGCA--AACCCG-CTCATAAA--T----AT-TATGGTTGTGATGGAAGTGAA------------CTGAG-GC----------TATCAGTATGCCTGGGT----CACCCT-GTCGAAATTCAT-AGGCAGGACAATT-AA--CCACTGCA--ATGGACTTAGT-AACTGTT-TCAAAGAC---ATCAACCAGTCCCTT-GCTAGGTGCTGGC----CTG----GCCTCCATGGA-CCTC-------CATCC----A-----AGATAAAC---TCTG-GGTTGACCTCGGATC--------------------------------------------------------------------------------------------- Tuber_sancarloensis_ITCV181_Mexico_holotype ---------------------------------------------------------------------------------------------------------------CATTAT------TATAATGCGTGA--------AAATGCCCCTA-ACACGGG---------------------------------------------------------CATACT------CTAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTCT--------------------------------------------AA-ACTTACAGTCTGAG-AAGG----CC-AT-GGGCCATAATCTTT-----AAACATTTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCATA-GGGCATGCCTGTTCGAGCGTCACTAAC--AACCCC-ATCACAAA--G----AG-TGTGGTATTGGCAGAAGTGG-------------GTAGG-GC-------TGGCAGTGTTGGCCC---------CACTCT-GCTGGAATGAAT-AGGCCGGAAATGTAGA--CCATGATA--ACAGACTTTCA-GAGTATC-CCCTGATG---CTAAATTAGTTTGTA-GGCTGGTCAGAAT----CCAGGTCGT-----TGGA-CCCC-------CATTC----T-----GTGTAAAG-CAGTAA-TGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_sancarloensis_nom_prov_ITCV885_Mexico ---------------------------------------------------------------------------------------------------------------CATTAT------------------------------------------------------------------------------------------------------TATAATGCGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAATGC-C-CTTAAC-----AGGGGCA---------TACTCTAGA------------------AAACT-CTAA-ACTTAAAGTCTGAG-AAGG----CC-AT-GGGCCATAATCTTT-----AAACATTTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCATA-GGGCATGCCTGTTCGAGCGTCACTAAC--AACCCC-ATCACAAC--G----AG-TGTGGTATTGGCAGAAGTGG-------------GTAGG-GC------------TGGCTGTGCTGGCCC----CACTCT-GCTAGAATGAAT-AGGCCGGAAATGTAGA--CCATGGTA--ACAGACTTTCA-GAGTATC-TCGTGATG---CTAAATTAGTTTGTA-GGCTGGTCAGAAT----CCA---GGCTGT--TGGA-CCCC-------CATTC----T-----GTGTAAAG-CAGTAA-TGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_separans_JT7697_Oregon ----------------------------------------------------------------------------------------------------CTGCGGAGGATCATTACAA---A----ATGTCTG---------GGATGTCCA----ATTCGGAC------------CCCCCAAGCA------A----AACACATCCATGTGTACTCTCCCATGTTGCTTCCCCAGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTGG--CCACTGCTGCCAGCCCCATGCCTTA---AT--T----------GGTTCCAGGGTTGAGGTGT-C-TGGGGA-----AGGGCCCG---------ATATC-AA----------AC--TTTTG---A-ACAA-ATTAGATGTCTGAG-AAGG----CC-AT-GTGCCGTAACATGT-----AAACTTGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAA--AACCCC-CTCACACA--T----AA-TGTGGTATTGGTAGAAGTGGA-------------TAGT-AC-T-AAC-----ACTACTTTGTCT--------TACTCT-GCTCAAATAAAT-AGGCCAGAGAAGT-GGA-CCATGGTAA--TAGACTC-CAGGAGTGTT-TTAAAATG---CTAAATTAGTCTTAA--CCGAGTCATGTT----CTG---AGCTACT--GGACCCCC-------CATTT----A-----GTCCAAAT-CAAAGA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAATAAGCCGGAGG---------------------------------------------- Tuber_shearii_JT12498_North_Carolina --------------------------------------------------------------------------------------------------------------------------------------------------------------TGGG--------------TTCCCAAAAC------A----AACACATTCATGTGTATCCTCCCATGTTGCTTTCCCAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGTGG--CCACTGCTACCAGCC-AGTCCATT---AT---T---------TGGTCTTCAGGTTGAGGTGC-T-TGGGAA-----AGGGTCA---------TTTAAC-AA----------A---CTTTA---T-ATTA-ACCTATTGTCTGAT-GAGG----CT-AT-ATGCCATAA-TATG--T--AAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACAAAC--AATCTG-ATCACCAT--A----TG-TGTGGTATTGGCAGAAGTGG-------------ATATA-GT-C-ATG-----AGTTTCAGACTC--------CACTCC-GCTGGAATAAAT-AGGCTGGAAAAGT-AGA-TCATAGCA--ACAGACTTTCA-GAGTATT-TTGGAATA---CTAAATTAGTTTAGA--GCAGATCAGAAT----CCA---GGCCAG--TTGA-CCCC-------CATCC----T-----GTGTAATG-CAGTAA-GGTTG------------------------------------------------------------------------------------------------------- Tuber_shearii_OSC51052_North_Carolina -------------------------------------------------------------------------------------------------------------------------------------G---------GATGCTCTA----TATGGG--------------TTCCCAAAAC------A----AACACATTCATGTGTATCCTCCCATGTTGCTTTCCCAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGTGG--CCACTGCTACCAGCC-AGTCCATT---AT---T---------TGGTCTTCAGGTTGAGGTGC-T-TGGGAA-----AGGGTCA---------TTTAAC-AA----------A---CTTTA---T-ATTA-ACCTATTGTCTGAT-GAGG----CT-AT-ATGCCATAA-TATG--T--AAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACAAAC--AATCTG-ATCACCAT--A----TG-TGTGGTATTGGCAGAAGTGG-------------ATATA-GT-C-ATG-----AGTTTCAGACTC--------CACTCC-GCTGGAATAAAT-AGGCTGGAAAAGT-AGA-TCATAGCA--ACAGACTTTCA-GAGTATT-TTGGAATA---CTAAATTAGTTTAGA--GCAGATCAGAAT----CCA---GGCCAG--TTGA-CCCC-------CATCC----T-----GTGTAATG-CAGTAA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_sp_JT28121_Japan -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTC-TTGGACACCACATTGTGGGTCCTTGTGTCAATGTACCTTTTTTCTTTTTTATACTCTTG-TAAA-ACTAGCAGTCTGAC-TAGG----CC--ATGTGCCTTTTTAATGA-----AATAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATTGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTACA--AACC-CTCTCACATTGTAATA-ATGTGTGGTATTGGCAGAAGTCGT------------------AGG-------------GACCTTTCCCAGAATC-CACTCT-GCTGAAATATAT-CGTGCAGATATCC-----CATACTGGTAAATGACTTTTT--TATGCT--AAAGCGT---TCAACGCTCTC-CAGCACTTGAGTCAGTTGG--C-------CATTGGTAGAACCGCACGTTATCAGGACCCCCATCCTTTGTATATATCTTTG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAATAAGCGGAGGAAAAGAAACCAACAGGGA-TTGCCT-CAGTAACGGCGAGTGAAGCGG Tuber_sp_RH73_Iowa ------------------------------------------------------------AAGTAAAA-GTCGTAA-CAAGGTTT--CCGTAGGTGAACCTGCGGAAGGATCATTAG----A----CATATCTG---------GGATGCCATTC--TGGGT---------------CCCCGACTCC------------AAACCCCTCTGTGTACCAATCCATGTTGCTTCCACAGTTTAAGAGTTCCTCTGTGGGTGGCATTTGCCATCGTTGCCTGCTCTGGTTGTTGACCGTGTCCGTTGTTGCCGTCTGCTTGAAGTGGATGAGTGCAGCAGCCCAGACTGCTATACCGTGCAGGTATCGCCAGCTATAACCGCCCATATTCAGCCTCCACACTG----------------------------------------------------------------------------------------------------------------------------------------------------------GTGGAGCT-ATTGAGGCAT-C-TGTGAG------AGGGTC---------CAAATCCAA-------------CCA-TGTCTG-TG-A-ACCAGCTGTCTGACCT-GG----CC-ATGTG-CCGGATTCAAT-----AAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATAGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGTGTCACTACA--AACCCCCCTCACAGATATT-------GTGGTGTTGGTAGGAGTGGG-------------T-G--AC-AGGTGCAATGGTG-CCTGTTCT---------ACTCT-GCCGAAATTCAT-TGGAAGGACAGTG--AG---CCTGATAAGTAGACTTTGTAAATGTCCATGGGATAT---GAATCAGTCTTGTAC---CCGGCCCAGTC----CTG---CCTACCC--GGA-CCCC---------CCA---------TCCATGATGAACAATG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAATAAGCGGAGGAAAAGAAACCAACAGGGA-TTGCCC-CCA------------------ Tuber_sp._ex._Angiosperm_Italy_AJ879679 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCC------T----GAATATCTCCTGTGTACCATGCCATGTTGCTTCCCCAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCACGGTCACTGTGCCGC-C-TGGGAG-----GAGGGCA---------CAGTCCCAA----------AAACTACTGTC-A-TCCT-ACCAGCAGTCTGAGAAAGG--GCCC-ATCAGGCCTGACAAACT--T--AAACA-GTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCTCA-GGGCATGCCTGTTTGAGCGTCACTGAA--AACCCA-CTCACGGA-AT----CA-CGTGGTGCTGATGGAGGTGGC------------TTGGT-AC-CGCAGCGGCGGTGGCCGGGTC---------CACCCT-GTCGAATTTCAT-TGGGAGGATGACG-GAC-CCCCGGCT--GCTGACTTTGTAGACATCGCCTTGAAAT---GCGTGCTAGTTGCCA-GTCAGGCCCGGTC----CTG---CACGCTTGAGGA-TCCC-------TGCCA----TGGGATCCACTGTC-CAACTG-GGTTGACCTCAGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAATAAGCGGAGGA---------------------------------------------- Tuber_sp._ex._Angiosperm_sp._Italy_AJ879687 ------------------------------------------------------------------------------------------------------------------TAAT---?----CATGTCGG---------GGGCGCCAAGGGATGCGTC--------------?CCTTAATCC------TG---?AATATCTCCTGTGTACCATGCCATGTTGCTTCCCCAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCACGGTCACTGTGCCGC-C-TGGGAG-----GAGGGCA---------CAGTCCCAA----------AAGCTACTGTC-A-TCCT-ACCAGCAGTCTGAGGAAGG--GCCC-ATCAGGCCTGACAAACT--T--AAACA-GTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCTCA-GGGCATGCCTGTTTGAGCGTCACTGAA--AACCCA-CTCACGGA-AT----CA-CGTGGTGCTGATGGAGGTGGC------------TTGGT-AC-CGCAGCGGCGGTGGCCGGGTC---------CACCCT-GTCGAATTTCAT-TGGGAGGATGACG-GAC-CCCCGGCT--GCTGACTTTGTAGACATCGCCTTGAAAT---GCGTGCTAGTTGCCA-GTCAGGCCCGGTC----CTG---CACGCTTGAGGA-TCCC-------TGCCA----TGGGATCCACTGCC-CAACTG-GGTTGACCTCAGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAATAAGCGGAGGAA--------------------------------------------- Tuber_sp._ex._Cephalanthera_damasonium_France_AY83304 --------------------------------------------------------------------------------GGTTT--CCGTAGGTGAACCTGCGGAAGGATCATTAA----A----CAAGCCGGGT--------GACGCCCGTG-GGGCGGCCA------------CCCAGAGCACCA----------AACCACAGCTGCGTACAATGCCATGTTGCTTCCCCGGGCCAGCGGCCGTCGCCGCCCGTCGGCGAGACACAGGCGTGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGCCG-CGCGGAGGCGC-C-CGGGGGT----G-GGGCTCCCGC----CCCTCGAAACTA-------AGACGTCGGGA---GCGT-GGACTGTGTCTGACCTGGGC--CAC-ATTGGGCCGCCGAAAACT-TG---ACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGGGGCATTCCTCA-GGGCATGCCTGTCCGAGCGTCAGTGCA--AACCAC-CTCACGGA-AC-----A-CGTGGTGCTGGCGGAGGTGGTG-----------TCGGA-TCGGGCCGCGATGGCGGCCCGGTCCTCCC----CACCCC-GCCGAAATGTAT-GGGGAGCAACACG-CAT-TGGCGGAC---CCGACTTGGTAGACGCTGTGGTTAGCG---TGGAGC-AGTCGCGGGGCCATTGCTGTCCCTCCCGCCTCGAGCCCGTGGCGGCATCTCCGGGGCATCTCGTCAGGTTTGACCTCGGATCAGGTAGGGGTACCCGC------------------------------------------------------------------------------------------------- Tuber_sp._ex._Epipactis_microphylla_France_AY286191 -------GGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAAAAAAGTATCGGGACCCCCATATC--------------------------------------------------------------CGGTC--------------CCCGAGCTCC-----------AAACCCCTCCGAGTACCCATCCATGTTGCTTTCCCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCAGC--CATTGCTGCCTGTC-TG----AC---CATGCCC---------GGTCACAGGACAGAGGTGC-C-TGGGGA-----GGGGCTC---------AAA--CAGA--------------AACTCTAGT-ACAC-ACAGGCTGTCTGAG-TGGGC----C-AT-GTGCCCTGC--AAG--ATTGAACGAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGCATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAC--AACCTT-CTCACGGAT-C----CC--GTGGTAGTGGCGGAAGCTCCA-----------CTGTG-CC--CCTCTGGGCTGCGGTGCA------------GCTCC-GCTGAAATGCAT-AAGCAGGACAAGT-GGG-CCTCAGCG--AGTGACTTAGTAA-GTGTC-TTGAAGAC---GTAGAGCAGTCAGCA-GCTAGGCCATG-C----CCTGCCCACCAGGACTC--CTCCCC-----CATCT----G-----GTGTGAACT---CTT-GGTTGACCTCGGATCAGGTAGGCATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATT-GCCCCAGTAACGGCGAGTGAAGCGGCAA Tuber_sp._ex._Epipactis_microphylla_France_AY286194 -----------------------------------------------TGGTCATTTAGAGGAAGTAAAAGTCGTAA-CAAGGTTT--CCGTAGGTGAACCTGCGGAAGGATCATTAG----A----CAAGCCGGGT--------GACGCCAGTG-GGGCGGCCA------------CCCAGAGCACCA----------AACCACAGCTGCGTACAATGCCATGTTGCTTCCCCGGGCCAGCGGCCGTCGCCGCCCGTCGGCGAGACACAGGCGTGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGCCG-CGCGGAGGCGC-C-CGGGGGT----G-GGGCTCCCGC----CCCTCAAAACTA-------AAACGTCGGGAG--CATT-GGACTGT--CTGACCTGGGC--CAC-ATTGGGCCGCCGAAAACT-TG---ACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGGGGCATTCCTCA-GGGCATGCCTGTCCGAGCGTCAGTGCA--AACCAC-CTCACGGAAAC-----A-CGTGGTGCTGGCGGAGGTGTGGTG---------TCTGA-TCGGGCCGCGATGGCGGCCCGGTCCTCCC----CACCCC-GCCGAAATGTAT-GGGGAGCAACACG-CAT-TGGCGGAC---CCGACTTGGTAGACGCTGTGGTTAGCG---TGGAGC-AGTCGCGGGGCCATTGCTGTCCCTCCCGCCTCGAGCCCGTGGCGGCATCTCCGGGGCATCTCGTCAGGTTTGACCTCGGATCAGGTAGGGGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAGAAACCAACAGGGATTGCCTCAGTAACGGCGAGTGAA-GCGGCA-GAGCTCAAATTTGAAATCTGG Tuber_sp._ex._Epipactis_microphylla_Hungary_AM999885 --------------------------------------------------------------AGGATCATTAAAAA-GTATCGGGACCCCCATATC--------------------------------------------------------------CGGTC--------------CCCGAGCTCC-----------AAACCCCTC{AC}GAGTACCCATCCATGTTGCTTTCCCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCAGC--CATTGCTGCCTGTC-CG----AC---CATGTCC---------GGTCACAGGACAGAGGTGC-C-TGGGGA-----GGGGCTC---------AAA--CAGA--------------AACTCTAGT-ACAC-ACAGGCTGTCTGAG-TGGGC----C-AT-GTGCCCTGC--AAG--ATTGAACGAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGCATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAC--AACCTT-CTCACGGAT-C----CC--GTGGTAGTGGCGGAAGCTCCA-----------CTGTG-CC--CCTCTGGGCTGCGGTGCA------------GCTCC-GCTGAAATGCAT-AAGCAGGACAAGT-GGG-CCTCAGCG--AGTGACTTAGTAA-GTGTC-TTGAAGAC---GTAGAGCAGTCAGCA-GCTAGGCCATG-C----CCTGCCCACCAGGACTC--CTCCCC-----CATCT----G-----GTGTGAACT---CTT-GGTTGACCTCGGATCAGGTAGGCATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTTGCCCCA-GTA------------------ Tuber_sp3_DQ478624_China ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAATGGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTCA-GGGCATGCCTGTTCGAGCGTCACT-AAC-AACCAT-TTCACATT--T----AA-TGTGGTATTGGCTAATGTGG-------------GTAGCACC-T-CCT------GTGCTGGCTCC---------ACTCA-GCTGAAATGGAT-AGGCCAGAGAAGC-AAA-CCATGGCAA--CAGACTCACA-GAGTATG---AGAGTG---CTAAACTAGTCTGTA--GCGGGTAGAACT----CTAC---G--CCATTGGG-CCCC-------CAGTCC---A------TCTACAT-CAGAGA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAATAAGCGGA------------------------------------------------- Tuber_sp4_DQ478627_China -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACT-AAC-AACCAC-CTCACATGA-A----AA-TGTGGTATTGGCCGAAGTGGATC----------GTACTTGC-----A-------CTGCAGGTCTC--------ACTCA-GCTGAAATCAAT-GGGCCAGAGAAGT-GGA-CCATAGCGA--CAGACTCTCA-GAGTGTTTTTGAAACG---CTAAACTAGTCTCTA--GCAGGTTGAAAT----CTG---AGCCGAT-TGGA-CCCC-------CATTTT---A-----GTCCAAAT-AAGTGA-TGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAATAAGCGGAGG----------------------------------------------- Tuber_sphaerosporum_JT12487_Oregon -----------------------------------------------------------------------------------------------------------------------------------TT--------------------------GGG--------------CTCCCAAGC-------A----AACACATCCATGTGTACTCTCCCATGTTGCTTCCCCAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGTGG--CCACTGCTGCCAGCC-CAGTTCCC---TAA--T---------AGGTTTCTGGCCTGAGGTGT-C-TGGGGA-----AGGGCTC---------AATATC-AA----------AC--CTTCA---A-ACTA-ATTAGTTGTCTGAC-AAGG----CC-AT-GTGCCGTAA-TCTT--T-AAAACATATT-AAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAA--AACCTT-CTCACATA--T----AA-TGTGGTATTGGTAGAAGTGA-------------ATAGT-AC-T-ACT-----AGTGCTTTGTCT--------TACTCT-ACTGAAATGAAT-AGGCCAGAAAAGC-GGA-CCATGGTA--ATAGACTCTCA-GAGTGTT-TTAAAATG---CTAAATTAGTCTCG--CCATGGTTGATAT----CTG---AGCCAT--TGGA-CCCC-------CATTT----A-----GTCCAAAC-CAGAGA-G----------------------------------------------------------------------------------------------------------- Tuber_sphaerosporum_JT19772_Oregon -----------------------------------------------------------------------------------------------------------------------------------TCG---------GATCTCCCA----TCGGGG--------------CTCCCAAGC-------A----AACACATCCATGTGTACTCTCCCATGTTGCTTCCCCAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGTGG--CCACTGCTGCCAGCC-CAGTTCCC---TAA--T---------AGGTTTCTGGCCTGAGGTGT-C-TGGGGA-----AGGGCTC---------AATATC-AA----------AC--CTTCA---A-ACTA-ATTAGTTGTCTGAC-AAGG----CC-AT-GTGCCGTAA-TCTT--T-AAAACATATT-AAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAA--AACCAT-CTCACATA--T----AA-TGTGGTATTGGTAGAAGTGA-------------ATAGT-AC-T-ACT-----AGTGCTTTGTCT--------TACTCT-ACTGAAATGAAT-AGGCCAGAAAAGC-GGA-CCATGGTA--ATAGACTCTCA-GAGTGTT-TTAAAATG---CTAAATTAGTCTCG--CCATGGTTGATAT----CTG---AGTCAT--TGGA-CCCC-------CATTT----A-----GTCCAAAC-TAGAGA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATC----------------------------------------------------------- Tuber_spinoreticulatum_U188_Maryland_isotype --------------------------------------------------------------GTAAAA-GTCGTAA-CAAGGTTT--CCGTAGGTGAACCTGCGGAAGGATCATTAT---------ACATATGT---------GGAACTCCA----AGTGGG--------------TTC?GACACC------A----TGTTAACCTCTGTGTACCGAGCCATGTTGCTTTCCCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACCTA--CTGTTGGTATCCACC-TGCTCTTC---CCTGCT---------GGGTTGAGCTGTGTGGGTTT-C-CTGGGA-----AAGGTAT---------AATATAAAT----------GC--TAATT---G-TTGA-ACAAGCTGT?TGAG-GAGG----CC-CA-GTGCCGCAT-ATTT--T--GAATAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCAT?GAATCTTTGAACGCACATTGCGCCTCTTGGTATTCCTTG-AGGCATGCCTGTTCGAGCGTCACAATT--ACCCCT-GTCACGGA--T----CT-CGTGGTGTTGATGGTAGTGGA------------TTCCA-GT-C---------ACTGATGTGTGGCTATAC--TACTCC-AT?GAAATGAAT-AGGGAGGACTACT-GG--CCTCAGCA--ATGGACTTAGT-AAATGTT-TTCAGAAT---GTAAACCAGTCTTGT-GCCAGGTCTGGTC----C-----GGTC?TACTGGATCCCG-------CATCC----A-----ACATGTAT----TCT-GGGTGACCT--------------------------------------------------------------------------------------------------- Tuber_taiyuanense_DQ478637_China --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCTTGAGGGCATGCCTGTTCGAGCGTCACTGCA--AACCCC-ATCATAGAA------AT-TATGGTATTGATGGAAGTGAA------------CTGAG-CC----------TACCAATATGCCCAGGTT----ACCCC-ATTGAAATGCAT-AGGCAGGACAATT-AA--CCTCTGCA--ATGGACTTAGT-AGCTGTT-TTGAAAAC---ATGAACCAGTCCCTT-GCTAGGTTCCAGC----CTG----GCCTCCACGGA-CCTC-------CATCC----A-----AGATGAAT---TCTG-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCA----------------------------------------------------------------- Tuber_texense_JT15162_Texas ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-GTCTGTAGTCTGAGTTAGG----CC-TA-GAGCCTAGAACTTTT----AAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCTTG-GGGCATGCCTGTTTGAGCGTCACTACA--AACCCT-CTCATAGA--T----AT-TATGGTATTGATGGAAGTGAA------------CTGTG-TC----------TACTGGTGTACTCGCAC----CACTCC-ATCGAAATGAAT-AGGCAGGATAGGT-GG--CAACCGCA--AGCGACTTGATAAACGGTT-TTCA-GAC---ATGGACCAGTCCTTT-GTTATGTTGCGCAGC--CTGTA-----TCTATGGA--CTCC------CATCC----AC-------TAAGCAC-TTTG-GGTTGACCTCAAATCAGGTAGGGATACCCGCTGAACTTAAGCA----------------------------------------------------------------- Tuber_whetstonense_JT25783_Oregon_Paratype ------------------------------------------------------------GAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAT------TATAATGCGTGG--------AAATGCCCCTA-ATAAGGG---------------------------------------------------------CATACT------CTATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTCT--------------------------------------------AA-ACTTACTGTCTGAG-AAGG----CC-AC-GTGCCGTAATCTTT-----AAACATTTT-AAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATA-GGGCATGCCTGTTCGAGCGTCACTAAC--AACCCC-ATCATACAA-G----AG-TGTGGTATTGGCAGAAGTGG-------------GTAGG-GC-------TAGCAGTGCTGGTCC---------CACTCT-GCTGGAATGAAT-AGGCCGGAAATGCAGA--CCATGGCA--ACAAACTTTCA-GAGTATT-TTGAAATG---CTAAATTAGTTTGGA--GCTGGTCAGAAT----CCAGGCCAT-----TGGA-CCCC-------CATTC----T-----GTGTAAAG-CAGTAA-TGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTTAGTAACGGCGAGTGAAGCGGCA Tuber_zhongdianense_DQ898186_China -------------------------------------------------------------TGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACA----A----ATGTCTG---------GGATGTCCA----ATCAGG--------------CTCCCAAGTA------A-----ACACATCTATGTGTACTCTTCCATGTTGCTTCCCCAGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTGG--CCACTGCTGCCAGCC-TAGCCCCT---CACG-----------GGTAATT-GGGCTGAGGTGT-C-TGGGGA-----AGGACCC---------AATATC-AA----------AC--TTTTG---A-ACAA-ATTTGTAGTCTGAG-AAGG----CT-AT-ATGCCGCAA--TTT--TAAAAATATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAA--AACCTT-CTCACAGAA------AA-TGTGGTATTGGTAGAAGTGG-------------GTAGT-AC-TAACAAAT--AGTACTTTGTCT--------TACTCT-ACTGAAATGAAT-AGGCCAGTAAAGC-GGA-CCATGGTA--GTAGACTC-CAGGAGTGTT-GTAAAATG---CTAAACTAGTCTTCA--CCAGGTGTAGATC---CTG---AGCTAAA-TGGACACCC-------CCTTT----A-----GTCCGAAT-CAGAGA-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAA-CTTAAGCAT-ATCAATA------------------------------------------------------- ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = Fig1_ITS_GuideTree) = N: 1-1239; CODONPOSSET CodonPositions (CHARACTERS = Fig1_ITS_GuideTree) = N: 1-1239; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M14943] TITLE Fig2_Puberulum; LINK TAXA = Taxa2; DIMENSIONS NCHAR=767; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Tuber_GB298_Italy ????????????????????????????????????????CATTACA----AATA-TCTGGG-ATGT-T-CTACTG------AA--CTCCCTTG-TAAACACATTCATGTGTAC-CCTTCCATGTTGCTTCCC-CAGACCAGTGGCTA-CTGCTGCCAGCCT---AGTACATAATTGAGACTTCTG-GGTTGA--GGTGTTTGGGGAAGGA---TTCATTATC-AAACTTTTAAACAAA--TTAGTTGTCT--GAGAGGGCCATGTGTCCGAAA-TATTTAAAATATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCATTAAA--AACCGTCT-CACAAAT-AA--TGTGGTGTTGGTAGAAGT-GGG--TAGTACT-GAT----AGTACTTTATCCTACTCCACCGAAATCAATA-GGTCAGA-AATGTGGA-CCATGGTAACAGACTCTCAGAGTG----TTTTAAAAATGCTAAACTAGTT-TTAACCTGGT-TGAAATCTGAGCC-ACTGTG-ACCCCCCTTAAGTCTAAACAAAGAGAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAA??????????????????????????????? Tuber_JT19301_Quercus_Mexico ????????????????????????????????????????CATTACA----AATA-CCTGGG-AAGT-T-CAACTG------AA--CTCCCAAG-AAAACACATTGATGTGTAC-CCTTCCATGTTGCTTCCC-TGGACCAGTGGCCA-TTGCTGCCAGCTG---AGTCTATAAATTAGACTTCCA-GGCTGA--GGTGTCCGGGGAAGGA---CTCATCATT-AAACCTTTAAACCAA--TTAGTTGTCT--TAGAGGGCTATTTGCC-CCAA-TATTTAAAATATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAA---AACCATCT-CACATAC-AA--TGTAGCATTGGTAGAAGT-GGG--TAGTACC-AAT----CGTACTTCATCCTACTCTACTGAAATCAATA-GGTCAGA-AAGGTTGG-CCGTGGTAACAGACTCACAAAGTG----TTTTA-AAATACTAAACTAGTC-TAAACCAGGT-TGAAATCTGAGCC-ACTGGA-CCCCCAATTTAGTCCAATGAATA-CATGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAA-------AGAAACCAACAGGGATTGC???? Tuber_JT22713_Corylus_avellana_Washington ?????????????????????????????????????????????????????????????????GT-C-CTATTG------GA--CCCC{CT}{AT}A--C{AT}AACACATCTATGTGTAC-TCTGCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGCCC---AGCCCCTAAT--TGGTTTCCG-GGTTGA--GGTGTCTGGGGAAGGG---CTCAATATC-AAACTTTTCAACATA--TTAGTCGTCT--GAGAAGGCCATGTGCC-GCAA--TATTTAACCAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCA{CG}CGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCAACT-CACATAT-CA--TGTGGTATTGGTAGAAGT-GGA--TAGTACT-AAC----ACTACTTTGTCTTACTCTGCTGAAATGAATA-GGCCAGA-AAAGTGGA-CCATGGTAATAGATTCCAGGAGTG----TTTTA-AAATGCTATACTAGTC-TTATCCAAGT-CATATTCTGAGCC-ACTGGA-CCCCCCATTTAGTCCAAACAACA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CG????????????????????????????????????? Tuber_JT32421_Mexico ????????????????????????????????????????CATTACAA---AATG-TCTGGG-ATGT-C-CAATTT-------GGACCCCCAAGCAAAATACATCCATGTGTAC-TCTCCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGCCC---ATCCCTTAAT-GGGGTTTCAG-GGTTGA--GGTGTCTGGGGAAGGG---TCCAATATC-ATACTTTTGAACAAA--TTAGATGTCT--GAGAAGGCCATGTGCC-AAAA--CAAATAAACTTGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACACAT-AA--TGTGGTATTGGTAGAAGT-GGA--TAGTACG-AAC----ACTACTTTGTCTTACTCTACTGAAATGAATA-GGCCAGA-GAAGTGGA-CCATGGTAATAGACTCCAGGAGTG----TTTTA-AAATGCTAAACTAGTC-TTAACCAAGT-CATGTTCTGAGCT-ACTGGA-CCCCCCATTTAGTCCAAAACAAA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAA-------AGAAACCAACAGGGATTGC???? Tuber_JT32470_Mexico_3 ???????????????????????????????????????TCATTACAA---AATG-TCTGGG-ATGT-C-CAATTT------GGA-CCCCCAAGCAAAATACATCCATGTGTAC-TCTCCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGCCC---ATCCCTTAAT--GGGTTCCAG-GGTTGA--GGTGTCTGGGGAAGGG---CCCAATATC-AAACTTTTGAACAAA--TTAGATGTCT--GAGAAGGCCATGTGCC-GTAA--TATATAAACTAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACACAT-AA--TGTGGTATTGGTAGAAGT-GGA--TAGTACC-GAC----ACTACTTTGTCTTACTCTACTGAAATTAATA-GGCCAGA-GAAGTGGA-CCATGGTAATAGACTCTAAGAGTG----TTTTA-AAATGCTAAACTAGTC-TTAACCAAGT-CATGTTCTGAGCT-ACTGGA-CCCCCCATATAGTCCAAACCAAA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAA-------AGAAACCAAC????????????? Tuber_JT7347_California ??????????????????????????????????????????TTAC-----AATGTTCTGGG-ACCT-G-CAATTG------GG--TTCCCAAA-CAAACACATTCATGTGTAC-TCTTCCATGTTGCTTCCC-CAGATCTGTGGCCA-CTGCTGCCAGTCC---AGTCCCAGAT--GGGTTTCTG-GGTTGA--GGTATCTGGGGAAGGG---TAAAATAAC-AAACCTTTAAACCTA--TTAGTTGTCT--GAGAAGGCCAGGTGCC-ATAA-CCTTTAAAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCATCT-CACAGAA-AA--TGTGGTATTGGTAGAAGT-GGG--CAGTAAT-AAC----ATTACTTTGTCCTACTCTACCCAAATGAATA-CGCCAGACGAAGTGGA-CCATGGTGACAGACTCTCAGAGTG----TTATTAGAATGCTAAACTAGTC-TAATCCAAGT-CAGGTTCTGAGCG-ACTGGA--CCCCCATTTAGTCCAAATCAGA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAA-------AGAAACCAAC????????????? Tuber_anniae_JT13209_Washington_Holotype AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACA----AATG-TCTGGG-ATGT-C-CAATCG------GG--CCCCCAAG-CAAACACATCCATGTGTAC-ACTCCCATGTTGCTTTCC-CAGATCAGTGGCCA-CTGCTGCCAGCCC---AACCCCTTGATTGGGGTCCTG-GGTTGA--GGTGTCTGGGGAAGGG---CCCAATAAC-AAACCTTTGAACCAA--TTAGTTGTCT--GAGTAGGCCACCTGCC-GCAA-TCTTTAAAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACAGAT-AA--TGTGGTATTGGTAGAAGT-GAA--CGGTACT-TAC----ATTACCTTGTCTCACTCTGCTGAAATGAATT-GGCCAGA-GAAGTGGACCCATGGTAATTGACTCCAGGAGTG----TTTTT-CAATGCTAAACTAGTCTTTACCCAAGT-CAAGTTCTGAGCT-ACCGGA-CCCCCCATTAAGTCCAAAACAGA-GTGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAAT??????????????????????????????????????????? Tuber_anniae_JT22986_Washington_4 ???????????????????????????????????????TCATTACA----AATG-TCTGGG-ATGT-C-CAATCG------GG--CCCCCAAG-CAAACACATCCATGTGTAC-ACTCCCATGTTGCTTTCC-CAGATCAGTGGCCA-CTGCTGCCAGCCC---AACCCCTTGATTGGGGTCCTG-GGTTGA--GGTGTCTGGGGAAGGG---CCCAATAAC-AAACCATTGAACCAA--TTAGTTGTCT--GAGTAGGCCACCTGCC-GCAA-TCTTTAAAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACAGAT-AA--TGTGGTATTGGTAGAAGT-GAA--CGGTACT-TAC----ATTACCTTGTCTCACTCTGCTGAAATGAATT-GGCCAGA-GAAGTGGACCCATGGTAATTGACTCCAGGAGTG----TTTTT-CAATGCTAAACTAGTCTTTACCCAAGT-CAAGTTCTGAGCT-ACCGGA-CCCCCCATTAAGTCCAAAACAGA-GTGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAA-------AGAAACCAACAGGGATTGC???? Tuber_asa_M1828_Italy ?GTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACA----AATA-TCTGGG-ATGT-T-CAACTG------GA--CTCCCAAG-TAAACACATTCATGTGTAC-CCTTCCATGTTGCTTCCC-CAGACCAGTGGCCA-TTGCCACCAGTCA---AGTCCCTAATTAAGGCTCCTG-GGCTGA--GGTGTCTGGGGAAGGA---CCCATTATC-AAACCTTTAAACAAA--TTAGTTGTCT--GAGACGGCCATGTGCC-GCAA-TCTTTAAAATATATT-AAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTAGGTATTCCTGAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCATCT-CACAGAT-AA--TGTGGTATTGGTAGAAGT-GGG--TAGTACTGGAT----TGTACTTTATCCTACTCCACCGAAATCAATA-GGTCAGA-AATGTGGA-CCATGGTAACAGACTCTCAGAGTG----TTATAAAAATACTATACTAGTC-TTAACCTGGT-TGGAATCTGAGTC-ACTGGA--CCCCCCTTGAGTCCAAACAAAGAGAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAAT??????????????????????????????????????????? Tuber_borchii_31_Italy_4 ???????????????????????????????????????TCATTAC{AG}----AATG-TATGGG-ATGC-C-CTATCG------GA--CTCCCAAGCAAAACACATTCCTGTGTAC-TCTCCCTCATT--------------------------------------------------------------------------------------------------AAACTTTTGAACCAA--TTAGTAGTCT--GAGAAGGCCATGTGC{CT}-GTAA--AATTTAAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACAGAT-AA--TGTGGTATTGGTAGAAGT-GGA--TGGTACT-AAC----ACTACTTTGTCTGACTCTACTGAAATGAATA-GGCCAGA-GAAGTTGA-CCGTGGTAATAGACTCCAGGAGTG----TTTTA-AAATGCTAAATTAGTC-TTCTCCAAGT-CATGTTCTGAGCT-ACCGGA-CCCCCCATTTAGTCCAAACTAGA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAA-------AGAAACCAAC????????????? Tuber_californicum_JT28058_California_5 ???????????????????????????????????????TCATTACA----AATG-TCTGGG-ATGT-C-CAATTT------GG--CTCCTAAG-CAAACACTTCTATGTGTAC-TCTCCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGTCCG--GCCTCTTAAC--GGGTTTCTG-GTCTGA--GATGTCTGGGGAAGG----TCCATTATT-AAACTTTTAAACCAA--TTGCCAGTCT--GAGAAGGCCATGTGCC-GTAA-TCTTTAAAACATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATACCTGTT-CGAGCGTCACTAAA--AACCATCT-CATATAT-AA--TGTGGTATTGGTAGAAGT-GGG--TAGTATT-AAT----AGTACTTTGTCTTACTCTACTGAAATGCATA-GGCCAGA-AAAGTGGA-CCATGGTAACAGACTCTCAGAGTG----TTTTA-AAATGCTAAATTAGTC-TTACCACAGT-TGATATCTGAGCT-ACCGGA--TCCCCATTTAGTCCAAACCAGA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAA-------AGAAACCAACAGGGATTGC???? Tuber_cf_borchii_China ????????????????????????????????????????CATTACTAAACAATG-TGCGGG-ATAT-C-CCACCG------GGGACTCCTTAGCAAAACACATCCATGAGTAC-CCTCCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGCTCT--GTCCTCTAATACAGGATCGTG-GGTTGA--GGTGTCTGGGGAAGGG---CCAACTGTCAAAACTTTTGAACCAA--TTTGTTGTCT--GAGAAGGCCATATGCC-GCAATATTTAAAAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACAGAT-AA--TGTGGTATTGGTAGAAGT-GGG--TAGTACT-AAC----AGTGCTTTGTCCCACTCTACCAAAATTAATA-GGCCAGA-AAAGTGAA-CTTGGGTAACAGACTCTCAGAGTG----TTTTA-AAATGCTAAACTAGTC-TTATCCAGGT-TGGAATCTGAGCC-ACTGGA--CCCCCATTTAGTCCAAAACAGA-GAG???????????????????????????????????????????????????????????????????????????????????????????? Tuber_dfmo0698_North_Carolina ????????????????????????????????????????CATTACAA---AATG-TCTGGG-AAGT-C-CATTTG------GA--CCCCCAAGCAAAACACATTCATGTGTAC-TCTCCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGCCC---ATCCCTTAAT-GGGTCTCCTG-GGTTGA--GGTGTCTGGGGAAGGG---CCTAATATT-AAACTTTTGAACCAA--CCTATTGTCT--GAGAAGGCCATGTGCC-GTAA--TATATAAACTTGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACACAT-AA--TGTGGTATTGGTAGAAGT-GGA--TAGTACT-AAC----ACTACTTTCTCTCACTCTACTGAAATGAATA-GGCCAGA-GAAGTAGA-CCATGGTAATAGACTCCAGGAGTG----TTTTA-AAATGCTAAACTAGTC-TTATCCAAGT-CATGTTCTGAGCT-ACTGGACCCCCCCATTTAGTCCAAACCAAA-GAGGTTG???????????????????????????????????????????????????????????????????????????????????????? Tuber_dryophilum_38_Italy_8 ???????????????????????????????????????TCATTACA----TATG-TCCGGG-ATGT-C-CAATGG------GG--CTCCCAAGCAAAACACATCCATGTGTAC-ACTCCCATGTTGCTTCCC-CAGATCAGTGGCCA-CTGCTGCCAGCCC---TGCCCTTCAT--GGCATTTCG-GGTTGA--GGTGTCTGGGGAAGGG---TCCAATATC-AAACTTTTGAACAAA--TCAGTTGTCT--GAGAAGGCCATCCGCC-GCAAATTTTAAAAATATATTAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATG{CT}CTGTT-CGAGCGTCACTAA---AACCGCCT-CACATAT-AA--TGTGGTATTGGTAGAAGT-GGG--TAGTGCT-AAA----AGCACCTTGT{CT}CTACTCTACTGAAATGAATA-GGCCAGA-AAAGTGAA-CCATGGTAGTAGACTCTCAGAGTG----TTTTA-ATATACTAAACTAGTC-TTAGCCAGGT-TGGAATCTGAGTT-CCTGGA--CCCCCATTTAGTCTAAATAAGA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAA-------AGAAACCAAC????????????? Tuber_latisporum_DQ898185_China_3 ???????????????????????????????????????TCATTACC----AATA-TCTAGG-GTCT-C-ATATAG------GA--CTCCTAAT-CAAACACATTCCTGTGTAT-TCTTCCATGTTGCTTTCC-CAAACCAGTAGCCA-CTGCTGCCAGCCG---ATATTCTAAT----------G-GTTTGA--GGTGTTTGGGGAAGGG---CCAGTTATT-AAACCTTTATACCAA--TTAGCTGTCT--GAGAAGGCTATGTGCC-CTAA--TCTTTAAACATATT-AAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTCAGGGCATGCCTGTT-CGAGCGTCACTAAC--AACCATCT-CACAGAG-AA--TGTGGTATTGGCCTGAGT-GGG--TTGCACT-TGC----AGTGCA-AATCTCACTTGGCTGAAATGGATT-GGCCAGA-CAAGGAGA-CAATGGCAACAGACTCTCAGAGTG----TTTTTGAAATGCTAAACTAGTC-TGTGGCAGGT-TGAACTCTGAGCTAAAAGGA--CTGATATTTAGTGTAAACAAGA-AATGTCGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGGAGGAA-------AA????????????????????? Tuber_liui_DQ898182_China ???????????????????????????????????????TCATTACA----AATG-TCTGGG-ATGT-C-CAATCG------GG--CTCCCAAG-TAAACACATCTATGTGTAC-TCTTCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGCCT---AGAGCTTTAC--AGGTTATTG-GGTTGA--GGTGTCTGGGGAAGGA---CCCAATATC-AAACTTTTGAACAAA--TTTGTAGTCT--GATAAGGCTATATGCC-GCAA-CCTTTAAAACATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCTTCT-CACAGAA-AA--TGTGGTATTGGTAGAAGT-GGGTGTAGTACA-CAA----AGTGCTTTGTCTTACTCTACTGAAATGAATA-GGCCGGT-AAAGAGGA-CCATGGTAGTAGACTCTAGGAGTG----TTGTA-TAATGCTAAACTAGTC-TTCACCAGGTGTAGATCCTGAGCT-AATGGA-CGCCCCCTTATGTCCAAATCAGA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATA?????????????????????????????????????????? Tuber_menseri_JT11661_Oregon_18 ???????????????????????????????????????TCATTACA----AATG-ACTGGG-ATGT-C-CTATCG------GA--CCCCCAAG-CAAACACATCTATGTGTAC-TCTGCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGCCC---AGCCCCTAAT--GGGTTCCTG-GGTTGA--GGTGTCTGGGGAAGGG---CTCAATATC-AAACTTTTCAACCCA--CTAGTCGTCT--GAGAAGGCCATGTGCC-GCAA--TATTTAAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCGACT-CACATAT-CG--TGTGGTATTGGTAGAAGT-GGA--TAGTACT-AAC----ACTACTTTGTCTTACTCTGCTGAAATGAATA-GGCCAGA-AAAGTGGA-CCATGGTAATAGATTCCAGGAGTG----TTTTA-AAATGCTATACTAGTC-TTATCCAAGT-CATATTCTGAGCC-ACTGGA-CCCCCCATTTAGTCCAAACAACA-GTGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAG?????????????????????????????? Tuber_multimaculatum_A200_Spain_Paratype AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAAA----TATA-TTTGGG-ATAC-CCTTACAG------GT--TCCCTATCCTTTAAACCTCTCTGTGTAC-CAATCCATGTTGCTTTCCTCAGATCAGCAGCCA-CTGCTGCCTGTAT---AGTTCACAAT--GGGCTAATA-TACAGA--GGTATCTGGGGGAGGGTCTTCTTATAACTCATATTGTTAACCAT-----GCAGTCT--GAGTTGGCTGAATACC-ATACATATCTTGAATAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTCAGGGCATGCCTGTT-CGAGCGTCACTACA--AACCTCACTCACAACA-AT--TGTGGTAATGGTAGGAGTGGAT--TATTATGACAA----AGTCACCAGTCACACCCTACCGAAATGCATT-GGGCGGA-CTTTTAGG-CTTAGTGAAGAGACTTAGTACATG----TTCAA-AGAATATATAATAGTCTCATGCTAGGT-TAGGTCCTGCCTG-CCTGGA--CCTCCATCTGGTTTATATACTG---GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAA????????????????????????????????????????? Tuber_pacificum_EU837241_Oregon_3 ???????????????????????????????????????TCATTACAA---AATG-TCTGGG-ATGT-C-CACTTC------GGACCCCCCAAGCAAAACACATCCATGTGTAC-TCTCCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGCCC---AGTCCATAAT--CGGTTCCTG-GGTTGA--GGTGTCTGGGGAAGGG---CTCAATATC-AAACCTTTGAACCAATCTTAGTTGTCT--GAGTAGGCCATCTGCC-GCAA-TCTTTAAAATATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCAT-CACAGTT-AA--TGTGGTATTGGTAGGAGT-GAA--CGGTACT-TGC----CTTACCTTGTCTCACTATACCGAAATGAATA-GGCCAGA-GAAGTGGACCCATGGTAATTGACTCCAGGAGTGTGTTTTTTC-TAATGCTATACTAGTCTTTACCCAAGT-CAAGTTCTGAGCT-AGCGGA--CCCCCATTTAGTCCGAAACAGA{GT}AAGGTTGACCTCG{AG}ATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAA-------AGAAACCAACAGGGATTGCCTCA Tuber_puberulum_AJ969625_Hungary_4 ???????????????????????????????????????TCATTACAA---AATGTTATGGG-ATGT-C-CTAACG------GG--CACCCAAG-CAAACACATCCATATT-----------------------------------------------------------------------------------------------------------------AAACTTTTGAAACAA--TTACTAGTCT--GATAAGGCCATATGCT-GTAA-AAATTTAAATATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACAGAT-AA--TGTGGTATTGGTAGAAGT-TGA--TAGTACT-AAC----ACTACTTTGTCTGACTCTACTGAAATTCATA-GGCCAGA-GAAGTGGA-CTATGGTAATAGACTCCAGGAGTG----TTTTA-AAACGCTAAATTAGTC-TTCTCCAAGT-CATGTTCTGAGCC-ATTGGA-CCCCCCATTTAGTCCAAACAAGA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAT{AT}AAAGCGGAGGAAGTTCGAATAAAGTCGTACCGCAGGTTC???? Tuber_separans_JT7697_Oregon_7 ???????????????????????????????????????TCATTACAA---AATG-TCTGGG-ATGT-C-CAATTC------GGACCCCCCAAGCAAAACACATCCATGTGTAC-TCTCCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGCCCC--ATGCCTTAAT--TGGTTCCAG-GGTTGA--GGTGTCTGGGGAAGGG---CCCGATATC-AAACTTTTGAACAAA--TTAGATGTCT--GAGAAGGCCATGTGCC-GTAA--CATGTAAACTTGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACACAT-AA--TGTGGTATTGGTAGAAGT-GGA--TAGTACT-AAC----ACTACTTTGTCTTACTCTGCTCAAATAAATA-GGCCAGA-GAAGTGGA-CCATGGTAATAGACTCCAGGAGTG----TTTTA-AAATGCTAAATTAGTC-TTAACCGAGT-CATGTTCTGAGCT-ACTGGA-CCCCCCATTTAGTCCAAATCAAA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCCGGAGG????????????????????????????????? Tuber_shearii_JT9933_Oregon ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TGGCCA-CTGCTGCCAGCTC---ACCCCCTTGACTGGGGCCCTG-GGTTGA--GGTGTCTGGGGAAGGG---CCCAATATC-AAACCTTTGAACCAA---TTATTGTCT--GAATAGGCCACCTGCC-GCAA-TCTTTAAAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATC-ATGAAGAACGCA-CGAAATGCGATAAGTAA-TGTGAATTGCA-AATTCAATGAATCATC-AATCTTTGAACGCACATTGCGCCCTTTGGTATTCCT--AGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACA-AT-AA--TGTGGTATTGGTAGAAGT-GAA---CGGACT-TAC----ATTACCTTGTCTCACTCTGCTGAAATAAATA--GCCAGA--AAGTGGACCCATGG-AATTGACTCC-GGAGTG----TTTTT-CAATGCTAAACTAGTCTTTACCCAAT--CAAGTTCTGA-CT-ACCGGA--CCCCCATTAAGTCCAAAACAAA-GTGGTTG???????????????????????????????????????????????????????????????????????????????????????? Tuber_sp._anamorph_Austria_7_AY212884 ???????????????????????????????????????TCATTACAA---AATG-TATGGG-ATGC-C-CTATCG------GG--CTCCTAAGCAAAACACCTTCCTGTGTAC-TCTCTCCCTTT--------------------------------------------------------------------------------------------------AAACTTTTGAACCAA--TTAGTAGTCT--GAGAAGGCCATGTGCC-ATAA--AATTTAAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACAGAT-AA--TGTGGTATTGGTAGAAGT-GGA--TAGTACT-AAC----ACTACTTTGTCTGACTCTACTGAAATGAATA-GGCCAGG-GAAGTTGA-CCGTGGTAATAGACTCCAGGAGTG----TTTTA-AAACGCTAAATTAGTC-TTCTCCAAGT-CATGTTCTGAGCT-ATCGGA-CCCCCCATTTAGTCCAAACTAGA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATA?????????????????????????????????????????? Tuber_sp._ex._Abies_homolepis_Japan_2_AB218133 ???????????????????????????????????????TCATTACTAAACAATG-TGCGGG-ATAT-C-CCACCG------GGGACTCCTTAGCAAAACACATCCATGAGTAC-CCTTCCATGTTGCTTCCC-CAGACCAGTAGCCA-CTGCTGCCAGCTCA--GTA{CT}CCTAATGTGGGTTCTTG-GGTTGA--GGTGTCTGGGGAAGGG---CTCAATATC-AAACTTTTGAACCAA--TCAGTCGTCT--GAGAAGGCAATATGCC-GCAA-ACTTTAAAATATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--ACCCACCT-CACAGAT-AA--TGTGGTATTGGTAGAAGT-AGG--TAGTATT-CAC----AGTACTTTGTCCTACTCTACAGAAATCAAT{AG}-GGCCAGA-AAAGTG{AG}A-CCATGGTAACAGACTCTCAGAGTG----TTTTA-AAATGCTAAACTAGTC-TCATCCAGGT-TGGAATCTGAGCC-ACTGGA--CCCCCATTTAGTCCAAAACAGA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAA??????????????????????????????? Tuber_sp._ex._California_2_DQ822837 ???????????????????????????????????????TCATTACAA---AATG-TCTGGG-ATGT-C-CACTTC------GGACCCCCCAAGCAAGACACATCCATGTGTAC-TCTCCCATGTTGCTTCCC-CAGACCAGCGGCCA-CTGCTGCCAACCC---AGTCCATAAT--CGGTTCCTG-GGTTGA--GGTGTCTGGGGAAGGG---CTCAATATC-AAACCTTTGAATCAATTTTAGTTGTCT--GAGTAGGCCATCCGCC-GCAA-TCTTTAAAATTTATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCTTCCACAGTT-AA--TGTGGTATTGGTAGAAGT-GAA--CGGTACTTGCC----TTACCTTTGTCTCACTATACTGAAATGAATA-GGCCAGA-GAAGTGGACCCATGGTAATTGACTCCAGGAGTGTGTTTTTTC-TAATGCTATACTAGTCTTTACCCAGGT-CAAGTTCTGAGCT-ACCGGA--CCCCCATTTAGTCCGAAACAGATAAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGC??????????????????????????????????????????????????? Tuber_sp._ex._EM_California_AY702816 ???????????????????????????????????????TCATTACA----AATG-TCTGGG-GTGT-C-CAATCGCCATGAGGACCCCCCTGTGCAAACACATCCATGTGTACCCGTTCCATGTTGCTTCCC-CAGACCAGCAGCCA-CTGCTGCCAGCCC---ACACCATAAT-CGGTTCCTGA-GGTTGA--GGTGTCTGGGGAAGGG---CTTGATATC-AAACCTTTAAACCAA--TTAGTTGTCT--GAGAAGGCCATCCGCC-GCAA-TCATTAAAATATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACATATATAATTGTGGTATTGGTAGAAGT-GAA--CGGTACT-TGC----ATTACCTTGTCTCACTATACCGAAATGAATA-GGCCAGA-GAAGTGGACCCATGGTAATTGACTCTAGGAGTG----TTTTT-CAATGCTAAACTAGTCTTTGCCCAAGT-CAAGTTCTGAGCC-ACCGGA--CCCTCATTTAGTCCGAGACAGAGAAGGTTGACCTC??????????????????????????????????????????????????????????????????????????????????? Tuber_sp._ex._Epipactis_LG10_New_York ???????????????????????????????????????TCATTACAA---AATG-TCTGGG-ATGT-C-CAATTT------GGA-CCCCCAAGCAAAACACGTCCATGTGTAC-TCTCCCATGTTGCTTCCC-CAGACCAGTGGCCACCTGCTGCCAGTCCT--ATGCCTTAAT--TGGTTTCAG-GGTTGA--GATGTCTGGGGAAGGG---CCCAATATC-AAACTTTTGAACAAA--TTAGATGTCT--GAGAAGGCCATGTGGC-CTAA--CATGTAAACTTGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACACAT-AA--TGTGGTATTGGTAGAAGT-GGA--TAGTACT-AAC----ACTACTTTGTCTTACTCTGCTCAAATGAATA-GGCCAGA-GAAGTGGA-CCATGGTAATAGACTCCAGGAGTG----TTTTA-AAATGCTAAATTAGTC-TTAACCGAGT-CATGTTCTGAGCT-ACTGGA-CCCCCCATTTAGTCCAAATCAAA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGG????????????????????????????????? Tuber_sp._ex._Epipactis_dunensis_California_11_AY634113 ???????????????????????????????????????TCATTACA----AATG-TCTGGG-ATGT-C-CAATCG------GG--CCCCCAAG-CAAACACATCCATGTGTAC-ACTCCCATGTTGCTTCCC-CAGATCAGTGGCCA-CTGCTGCCAGCCC---ACCCCCTCAATTGGGGTCCTG-GGTTGA--GGTGTCTGGGGAAGGG---CCCAATAAC-AAACCTTTGAACCAA--TTAGTTGTCT--GAGTAGGCCACCCGCC-GCAA-TCTTTAAAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACAGAT-AA--TGTGGTATTGGTAGAAGT-GAA--CGGTACT-TAC----ATTACCTTGTCTCACTCTGCTGAAATGAATA-GGCCAGA-GAAGTGGACCCATGGTAATTGACTCCAGGAGTG----TTTTT-CAATGCTAAACTAGTCTTTACCCAAGT-CAAATTCTGAGCT-ACCGGA-CCTCCCATTAAGTCCAAAACAGA-GTGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAA-------AGAAACCAACAGGGATTGC???? Tuber_sp._ex._Epipactis_helleborine_Japan_AB428787 ??????????????????????????????????????????TTACAA---AATG-TTTGGG-ATAC-C-CAACTT------GG--GCCCTAAG---GGCCATTCCATGTGTAC-TCTCCCATGTTGCTTCCC-CAGAA-AGTGGCCA-CTGCTGCCAGCTC---AGCCCCGTAATGGGTTTCCTG-GGTTGA--GGTGTCTGGGGAAGGG---CCCAATATC-AAACCTTTAAACCAA-ATTAGTTGTCT--GATAAGGCCATGTGCC-GTAA--CATTTAAACTTGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCTCT-CACAGAT-AA--TGTGGTATTGGTAGAAGT-GGA--TAGTACT-AAC----ACTACCCCATCTTACTCTACTGAAATGAATA-GGCCAGA-GAAGTGGA-CTATGGTAATAGACTCCAGAAGTG----TTTGA-AAATGCTAATCTAGTC-TTACCCAAGT-CATGTTCTGAGCT-ACTGGA--CCCCCATTTAGTCCAAACCAAA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAG???????????????????????????????????????????????????? Tuber_sp._ex._Fagus_sylvatica_Denmark_5_AJ969615 ???????????????????????????????????????TCATTACAA---AATGTTATGGG-ATGT-C-CTAACG------GG--CACCCAAG-CAAACACATCCATATT-----------------------------------------------------------------------------------------------------------------AAACTTTTGAAACAA--TTACTAGTCT--GATAAGGCCATATGCT-GTAA-AAATTTAAATATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACAGAT-AA--TGTGGTATTGGTAGAAGT-TGA--TAGTACT-AAC----ACTACTTTGTCTGACTCTACTGAAATTCATA-GGCCAGA-GAAGTGGA-CTATGGTAATAGACTCCAGGAGTG----TTTTA-AAACGCTAAATTAGTC-TTCTCCAAGT-CATGTTCTGAGCC-ATTGGA-CCCCCCATTTAGTCCAAACAAGA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAA-------AGAAACCAACAGGGATTGC???? Tuber_sp._ex._Larix_decidua_Poland_3_EU931685 ???????????????????????????????????????TCATTACA----TATG-TCCGGG-ATGT-C-CAATGG------GG--CTCCCAAGCAAAACACATCCATGTGTAC-ACTCCCATGTTGCTTCCC-CAGATCAGTGGCCA-CTGCTGCCAGCCC---TGCCCTTCAT--GGCATTTCG-GGTTGA--GGTGTCTGGGGAAGGG---TCCAATATC-AAACTTTTGAACCCA--CTAGTCGTCT--GAGAAGGCCATGTGCC-GCAA--TATTTAAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAAT{GT}CGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCGACT-CACATAT-CG--TGTGGTATTGGTAGAAGT-GGA--TAGTACT-AAC----ACTACTTTGTCTTACTCTGCTGAAATGAATA-GGCCAGA-AAAGTGGA-CCATGGTAATAGATTCCAGGAGTG----TTTTA-AAATGCTATACTAGTC-TTATCCAAGT-CATATTCTGAGCC-ACTGGA-CCCCCCATTTAGTCCAAACAACA-GTGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAA-------AGAAACCAACAGGGATTGC???? Tuber_sp._ex._Larix_decidua_Poland_EU931686 ??????????????????????????????????????????????????ATATG-TCCGGG-ATGT-C-CAATGG------GG--CCCCCAAG-CAAACACATCTATGTGTAC-TCTGCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGCCC---AGCCCCTAAT--GGGTTCCTG-GGTTGA--GGTGTCTGGGGAAGGG---CTCAATATC-AAACTTTTCAACCTA--CTAGTCGTCT--GAGAAGGCCATGTGCC-GCAAATTTTTAAAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCGCCT-CACATAT-AA--TGTGGTATTGGTAGAAGT-GGG--TAGTGCT-AAC----AGCACCTTGTCCTACTCTACTGAAATGAATA-GGCCAGA-AAAGTGAA-CCATGGTAATAGACTCTAAGAGTG----TTTTA-ATATACTAAACTAGTC-TTAGCCAGGT-TGGAATCTGAGTT-CCCGGA---CCCCATTTAG?--AAACAACA-GTG???????????????????????????????????????????????????????????????????????????????????????????? Tuber_sp._ex._Pinus_halepensis_France_AJ410864 ????????????????????????????????????????????????????????TCTGGGTATGT-T-CCACTG------AA--CTCCCTTG-TAAACACATTCATGTGTAC-CCTTCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGTCC---AGTTCATAATTATGGCTTCTG-GGTTGA--GGTGTTTGGGGAAGGA---CCCATTATC-AAACTTTTAAACAAA--TTAGTTGTCT-AGAGAGGGCCATGTGTCCGCAA-TCTTTAAAATATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCATTAAA--AACCATCT-CACATAT-AC--TGTGGTGTTGGTAGAAGT-GGG--TAGTACT-GAT----AGTACTTTATCCTACTCCACCAAAATCAATA-GGTCAGA-AATGTGGA-CCCTGGTAACAGACTCTCAGAGTG----TTTTAAAAATGCTAAACTAGTC-TTAACCAGGTCGGAATCTTGAGCTAGAGGGA--CCCCCCTTGAGTCCAAACAAACAGTGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA-CATATCAAT??????????????????????????????????????????? Tuber_sp._ex._Pinus_sabiniana_Mexico_3_EU649090 ???????????????????????????????????????TCATTACA----AATA-TCTGGG-ATGTTCGTCATAA----------CTCCCAAG-?AAACACATTGATGTGTAC-CCTTCCATGTTGCTTCCC-CAGA??AGTGGCCA-CTGCTGCCAGCCC---AGTTCATAATTTGGACTTTCG-GGTTGA--GGTGTCTGGGGAAGGA---CTCATTGTT-AAACCTTTAACCAAA--TTAGTTGTCT--GAGAGGGCCATCGGTC-CTAA-TATTTAAAGTATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACAACCT-CACATAT-AA--TGTGGTATTGGTAGAAGT-GGG--TGATACT-GAT----AGTACTTTATCCTACTCTACTGAAATCAATA-GGTCAGA-AAAGTTGA-CCATGGTAACAGACTCTCAGAGTG----TTTTAGAAATACTAAACTAGTC-TTAACCAGGT-TGGAATCTGAGTC-ACTGGA--CCCCCATTTAGTCCAAACAATA-AAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAA-------AGAAACCAACAGGGATTGC???? Tuber_sp._ex._Pinus_thunbergii_Japan_AB285533 ???????????????????????????????????????TCATTACC----AAAG-TATGGG-AAGT-T-TTACAG------GA--CTCCCAAG-TAAACACATTCCTGTGTGG-TATCCTTTTTTTTTTT---------------------------------------------------------------------------------------------TAAGCTCTATGTCAT--TTTCTTGTCT--GAGAAGGCCATGTGCC-ATAA--CCTTGAAAAATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTAAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAC--AACAATTT-CACAGGGAAA--TGTGGTGTTGGCTGATGT-GTGTCTAGCACTTTGC----TGTGC-TGGTCTCACTCGGCTGAAATGGATA-GGCCAGAGAAGGTACA-ACTTGGCAACAGACTCTCAGAGTA----TTCTT-AAATGCTAAACTAGTCTCGTCAAATGT-TGAAATCTGTGCC-CAAGGA-CCCCCAATACAGTCCGAACTGGA-GATGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAA??????????????????????????????? Tuber_sp._ex._Populus_Quebec_6_EU554690 ???????????????????????????????????????TCATTACAA---CATG-TCTGGG-ATGT-C-CACTCG------GG--CTCCCAAGCAAAACACATCCATGTGTAC-TCTCCCATGTTGCTTTCC-CAGACCAGTGGCCA-CTGCTGCCAGCCCATCATCCCTTAAT--GGGTTCCTG-GGTTGA--GGTGTCTGGGGAAGGG---CCCAATATC-AAACTTTTGAACCAA--CTAGTTGTCT--GAGAAGGCCATGTGCC-GTAA--CATATAAACTTGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACACAT-AT--AGTGGTATTGGTAGAAGT-GGA--TAGTACT-AAC----ACTACTTTCTCTCACTCTGCTGAAATGAATA-GGCCAGA-GAAGTGGA-CCATGGTAATAGACTCCAGGAGTA----TTTTA-AAATGCTAAACTAGTC-TTGCCCAAGT-CATGTTCTGAGCT-ACTGGA-CCCCCCATTTAGTCCAAACAAAA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCCGGAGG????????????????????????????????? Tuber_sp._ex._Populus_tremula_Estonia_AJ534705 ???????????????????????????????????????TCATTACA----AATA-TCTGGG-ATGT-C-CAATCG------GG--CCCCCAAG-CAAACACATCCATGTGTAC-TCTCCCATGTTGCTTCCC-CAGATCAGTGGCCA-CTGCTGCCAGCTC---ACCCCCTTGACTGGGGCCCTG-GGTTGA--GGTGTCTGGGGAAGGG---CCCAATATC-AAACCTTTGAACCAA--TTAGTTGTCT--GAATAGGCCACCTGCC-GCAA-TCTTTAAAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCA{AG}TGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACAGAT-AA--TGTGGTATTGGTAGAAGT-GAA--CGGTACT-TAC----ATTACCTTGTCTCACTCTGCTGAAATAAATA-GGCCAGA-GAAGTGGACCCATGGTAATTGACTCCAGGAGTG----TTTTT-CAATGCTAAACTAGTCTTTACCCAAGT-CAAGTTCTGAGCT-ACCGGA--CCCCCATTAAGTCCAAAACAAA-GTGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGG???????????????????????????????????? Tuber_sp._ex._Quercus_Mexico_2_EU563484 ???????????????????????????????????????TCATTACAA---AATG-TCTGGG-ATGT-C-CAATTT-------GGACCCCCAAGCAAAATACATCCATGTGTAC-TCTCCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGCCC---TTCCCTCAAT--GGGTTCCAG-GGTTGA--GGTGTCTGGGGAAGGG---CCCAATATC-{AC}AACTTTT{AG}AACAAA--TTAGATGTCT--GAGAAGGCCATGTGCC-GTAA--CATATAAACTTGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACACAT-AA--TGTGGTATTGGTAGAAGT-GGA--T{AG}GTAC{AG}-AA{CT}----ACTACTTTGTCTTACTCTACTGAAATGTATA-GGCCAGA-GAAGCGGA-CCATGGTAATAGACTCCAGGAGTG----TTTT{AG}-AAATGCTAAACTAGTC-TTAACCAAGT-{CT}ATGTTCTGAGCT-ACTGGA-CCCCCCATTTAGTCCAAATCAAA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAA-------AGAAACCAACAGGGATTGC???? Tuber_sp._ex._Quercus_North_Carolina_AY656959 ???????????????????????????????????????TCATTACA----AATG-TCTGGG-ATGT-C-CAATCG------GG--CTCCCAAG-CAAACACATCTCTGTGTAC-CCTTCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTACCAGTCC---AGTCCTTAGC--GGGTTCCTC-GATTGA--GGTGTCTGGGGAAGGA---CCCAATATT-AAACTTTCCAATCAA--TTAGTTGTCT--GAGAAGGCCATGTGCC-GCAA-TC{CT}TTAAAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCATCT-CACAGCT-CT--TGTGGTATTGGTAGAAGT-GGG--TCGTACT-AAC----AGTACGCTTTCCTACTCTACTGAAATAAATA-GGCCAGA-GAAGTGGA-TCATGGTAACAGACTCTAAGAGTG----TTTTC-AAATGCTAAACTAGTC-TTACCCAGGT-CA?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_sp._ex._Quercus_crispula_Japan_AB218103 ????????????????????????????????????????TCTTACC----AATG-TATGGG-ATGT-T-CTACAT------GA--CTCCCAG--TAAACACATTCCTGTGTGT-TATCCTCTTTTTTTT----------------------------------------------------------------------------------------------AAAGCTCTATGCCAT--TTCCTTGTCT--GAGAAGGCCATGTGCC-ATAA--CCTTGAAAAATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAC--AACAATTT-CACAGGGAAA--TGTGGTGTTGGCCGATGT-GTGTCTAGCACTTTGC----TGTGC-TGGTCTCACTCGGCTGAAATGGATA-GGCCAGAGAAGGTACA-ACTTGGCAATAGACTCTCAGAGTA----TTCAC-AAATGCTAAACTAGTCTTGTCACATGT-TGAAATCTGTGTC-CAAGGA-CCCCCCATTCAGTCCGAACTGGA-GATGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAA??????????????????????????????? Tuber_sp._ex._Quercus_garryana_Oregon_2_FJ348396 ???????????????????????????????????????????????????CGGG-TCTGGT-ATGT-C-?TAGGA------GA?GCCCTGGCG----TTTTTTCTATGTGTAC-TCTGCCATGTTGCTTCCC-C?GACCAGTGGCCA-CTGCTGCCAGCCC---AGCCCCTAAT--GGGTTCCTG-GGTTGA--GGTGTCTGGGGAAGGG---CTC{AT}ATATC-AAACTTTTCAACCCA--CTAGTCGTCT--GAGAAGGCCATGTGCC-GCAA--TATTTAAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCGACT-CACATAT-CG--TGTGGTATTGGTAGAAGT-GGA--TAGTACT-AAC----ACTACTTTGTCTTACTCTGCTGAAATGAATAGGGCCAGA-AAAGTGGACCCATGGTAATAGATTCCAGGAGTG----TTTTA-AAATGCTATACTAGTC-TTATCCAAGT-CATATTCTGAGCC-ACTGGA-CCCCCCATTTAGTCCAAACAACA-GTGGTTGACCTCGGATCAGGTAGGGATACCC???????????????????????????????????????????????????????????????? Tuber_sp._ex._Quercus_garryana_Oregon_FJ348398 ???????????????????????????????????????TCATTACA----AATG-ACTGGG-ATGT-C-CTATCG------GA--CCCCCAAG-CAAACACATCTATGTGTAC-TGTGGCATGTTACTTCCC-CTGACCAGTGGCCA-CTGCTGCCAGCCC---AGCCCCTAAT--GGGTTCCTG-GGTTGA--GGTATAGAGGGAAGGG---CTCAATATC-AAACTTTTCAACCCA--CTAGTCGTCT--GAGAAGGCCATGTGCC-GCAA--TATTTAAACAAGTT-AAAACTATCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGA?ATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCATGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCGACT-CACATAT-CG--GGGGGTAAGGG-AGAAGT-GGA--TAGTACT-AAC----ACTACTTTGTCTTACTCTGCTGAAATGAATA-GGCCAGA-AAAGTGGA-CCATGGTAATAGATTCCAGGAGTG----GTTTA-AAATGCTATAC?AGTC-TTATCCAAGT-CATATTC-GAGCC-ACTGGACCCCCCGCCTCTGCACGCACC??????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_sp._ex._Quercus_garryana_Oregon_FJ348402 ???????????????????????????????????????TCATTTCA----AATG-ACTGGG-ATGT-CCTTATCG------GA--CCCCCAAG-CAAACACAT?TATGTGTACTTCTGCCATGTTGCTTCCC-CAGA?CAGTGGCCA-CTGCTGCCAGCCC---AGCCCCTAAT--GGGTTCCTG-GGTTGA--GGTGTCTGGGGAAGGG---CTCAATATC-AAACTTTTCAACCCA--CTAGTCGTCT--GAGAAGGCCATGTGCC-GCAA--TATTTAAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACACTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCGACT-CACATAT-CG--TGTGGTATTGGTAGAAGT-GGA--TAGTACT-AAC----ACTACTTTGTCTTACTCTGC{CG}GAAATGAATA-GGCCAGA-AAAG{CG}GGC-CCATGGTAACAGA????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_sp._ex._Quercus_garryana_Oregon_FJ348403 ???????????????????????????????????????TCATTACA----AATG-ACTGGG-ATGT-C-CTATCG------GA--CCCCCAAG-CAAACACATCTATGTGTAC-TCTGGCATGTTGCTTCCC-CAGACCAGTGGCCA-ATGCTGCCAGCCC---AGCCCGTAAT--GGGTTCGTG-GGTTGA--GGTGTCTGGGGAAGGG---CTCAATATC-AAACTTTTCAACCCA--CTAGTCGTCT--GAGAAGGTCATGTGCCTGCAA--TATTTAAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCCCTAAA--AACCGACT-CACATAT-CG--GGTGGTAAAGGTAGAAGT-GGA--TAGTACT-AAC----ACTACTCTGTTTTCCTCTG?TGAAATGAATA-GGCCAGA-AAAGTGG?-CCATGGTAATAGATTCCAGGCGTG----GTTCA-AAATGCTACAC?AC?C-GTATCCAAGT-CATATTC-GAGCC-ACTGGCCCGCGCCGCATGGCGCGCACC??????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_sp._ex._Quercus_prinus_Maryland_2_FJ008031 ????????????????????????????????????????CATTACAACAGAAAA-TGCGGG-AGGT-A-CGCCTG------AA--CTCCTTAG-CAAACACATTGATGTCTAC-CCTTCCATGTTGCTTCCC-CAGACCAGTAGCCA-CTGCTGCCAGCCA---AGTCCATAATTTGGTCTTCCG-GGTTGA--GGTATCTGGGGAAGGA---CTTATCATT-AAACCCTTGAACTAA--TCAGTTGTCTGAGAGAGGGCCATCTGCC-CTGA-TATTTAAATTATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCTCCT-CACATATAAA--TGTGGTATTGGTAGAAGTGGGG--TAGTACT-GAT----GGTACTTTATCCTACTCTGCTGAAATCAATA-GGTCAGA-AAAGTGGA-CCGTGGTAACAGACTCTCAGAGTG----TTTTAAAAATACTATACTAGTC-TTAGCCAGGTTGGGAATCTGAGCC-ACCGGA--CCCCCATTTAGTCCAAACAATA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGA??????????????????????????????????????????????????????????? Tuber_sp._ex._Salix_alba_Neatherlands_3_AJ920010 ???????????????????????????????????????TCATTACA----AATG-ACTGGG-ATGT-CCCTATCG-------GA{AC}CCCCCAAGACAAACACATCTATGTGTAC-TCTGCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGCCC---AGCCCCTAAT--GGGTTCCTG-GGTTGA--GGTGTCTGGGGAAGGG---CTCAATATC-AAACTTTTCAACCCA--CTAGTCGTCT--GAGAAGGCCATGTGCC-GCAA--TATTTAAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCGACT-CACATAT-CA--TGTGGTATTGGTAGAAGT-GGA--TAGTACT-AAC----ACTACTTTGTCTTACTCTGCTGAAATGAATA-GGCCAGA-AAAGTGGA-CCATGGTAATAGATTCCAGGAGTG----TTTTA-AAATGCTATACTAGTC-TTATCCAAGT-CATATTCTGAGCC-ACTGGA-CCCCCCATTTAGTCCAAACAACA-GTGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAA-------AGAAACCAACAGGGATTGC???? Tuber_sp._litter_North_Carolina_2_AY969316 ?????????????????????????????????????????????????????????????????????????????????????????????????????CATTAACGAGAACCTGCCCTATGGGTAGAATCTCCCACCCGTGTTTA-CTG-TACCTTTGTT----GCTTTGGCA---GG-CCCG-TCTCCA--GACCGCCGGCCCAGGCTG-GCCAGTGCC-TGCCAGAGGATCTAAA-CTCGCTATTT---A-CATGT--TGTCCGAGCAGT--CTATATAATAGTT-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCGTCT-CACAGCT-CT--TGTGGTATTGGTAGAAGT-GGG--TCGAACT-AAC----AGTACGCTTTCCTACTCTACTGAAATAAATA-GGCCAGA-GAAGTGGA-TCATGGTAACAGACTCTAAGAGTG----TTTTC-AAATGCTAAACTAGTC-TTACCCAGGT-CATGTTCTGAGCC-ACTGGA--CCCCCATTCAGTACAAAACAGA-GAGGTTGACCTCGGATCAGGTAGGGATACCC???????????????????????????????????????????????????????????????? Tuber_sp2_DQ478621_China ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TGTGAAT-GACGAATTACGTGAATCATCGAATCTTTGAACGCACATGGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTACGAGCGTCACTAAA--AACCGTCT-CACAGAT-AA--TGTGGTATTGGTAGAAGT-GGG--TAGTACTTAAC----AGTGCTTTTTCCTACTCTCCTGAAATGAATA-GGCCAGA-AAAGTGGA-CCATGGTAACAGACTTTCAGAGTG----TTTTA-AAATGCTAAACTAGTC-TGGCCCAGGT-TGGAATCTGAGCC-ACTGGA--CCCCCATTTAGTCCAAAACAGA-GAGGTCGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGA??????????????????????????????????? Tuber_sp3_DQ478624_China ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GTGAATGGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTCAGGGCATGCCTGTT-CGAGCGTCACTAAC--AACCATTT-CACATTT-AA--TGTGGTATTGGCTAATGT-GGG--TAGCACC-TCC----TGTGC-TGGCTCCACTCAGCTGAAATGGATA-GGCCAGA-GAAGCAAA-CCATGGCAACAGACTCACAGAGTA-------TGAGAGTGCTAAACTAGTC-TGTAGCGGGT-AGAACTCTACGCC-ATTGGG--CCCCCAGTCCATCTACATCAGA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGA??????????????????????????????????? Tuber_sp4_DQ478627_China ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????A-------------------------------------------------------------------TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAC--AACCACCT-CACATGAAAA--TGTGGTATTGGCCGAAGT-GGA--TCGTACT-TGC----ACTGCA-GGTCTCACTCAGCTGAAATCAATG-GGCCAGA-GAAGTGGA-CCATAGCGACAGACTCTCAGAGTG----TTTTTGAAACGCTAAACTAGTC-TCTAGCAGGT-TGAAATCTGAGCCGATTGGA-CCCCCATTTTAGTCCAAATAAGT-GATGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGG????????????????????????????????? Tuber_sphaerosporum_JT12487_California_2 ??????????????????????????????????????????????????????????TGGG-ATCT-C-CAAT{CT}{GT}-------GGGCTCCCAAG-CAAACACATCCATGTGTAC-TCTCCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGCCCA--GTTCCCTAAT--AGGTTTCTG-GCCTGA--GGTGTCTGGGGAAGGG---CTCAATATC-AAACCTTCAAACTAA--TTAGTTGTCT--GACAAGGCCATGTGCC-GTAA-TCTTTAAAACATATT-AAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACC{AT}TCT-CACATAT-AA--TGTGGTATTGGTAGAAGT-GAA--TAGTACT-ACT----AGTGCTTTGTCTTACTCTACTGAAATGAATA-GGCCAGA-AAAGCGGA-CCATGGTAATAGACTCTCAGAGTG----TTTTA-AAATGCTAAATTAGTC-TCGCCATGGT-TGATATCTGAG{CT}C-ATTGGA--CCCCCATTTAGTCCAAAC{CT}AGA-GAGGTTGACCTCGGATCAGGTAGGGATACCCG{CG}TGAACTTAAGCATAT??????????????????????????????????????????????? Tuber_zhongdianense_DQ898186_China ???????????????????????????????????????TCATTACA----AATG-TCTGGG-ATGT-C-CAATCA------GG--CTCCCAAG-TAAACACATCTATGTGTAC-TCTTCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGCCT---AGCCCCTCAC--GGGTAATTG-GGCTGA--GGTGTCTGGGGAAGGA---CCCAATATC-AAACTTTTGAACAAA--TTTGTAGTCT--GAGAAGGCTATATGCC-GCAA-TTTTAAAAATATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCTTCT-CACAGAA-AA--TGTGGTATTGGTAGAAGT-GGG--TAGTACT-AACAAATAGTACTTTGTCTTACTCTACTGAAATGAATA-GGCCAGT-AAAGCGGA-CCATGGTAGTAGACTCCAGGAGTG----TTGTA-AAATGCTAAACTAGTC-TTCACCAGGTGTAGATCCTGAGCTAAATGGA-CACCCCCTTTAGTCCGAATCAGA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATA?????????????????????????????????????????? ; END; BEGIN SETS; CHARSET excluded (CHARACTERS = Fig2_Puberulum) = 1-52 62-70 76-86 93-99 162-185 236-244 252-260 275-280 453-456 473-478 508-524 563-566 589-594 627-631 647-650 670-674 685-767; END; BEGIN TREES; TITLE Fig2_Puberulum; LINK TAXA = Taxa2; TRANSLATE 1 Tuber_multimaculatum_A200_Spain_Paratype, 2 Tuber_sp._ex._Quercus_crispula_Japan_AB218103, 3 Tuber_sp._ex._Abies_homolepis_Japan_2_AB218133, 4 Tuber_sp._ex._Pinus_thunbergii_Japan_AB285533, 5 Tuber_sp._ex._Epipactis_helleborine_Japan_AB428787, 6 Tuber_sp._ex._Pinus_halepensis_France_AJ410864, 7 Tuber_sp._ex._Populus_tremula_Estonia_AJ534705, 8 Tuber_sp._ex._Salix_alba_Neatherlands_3_AJ920010, 9 Tuber_sp._ex._Fagus_sylvatica_Denmark_5_AJ969615, 10 Tuber_sp._anamorph_Austria_7_AY212884, 11 Tuber_sp._ex._Epipactis_dunensis_California_11_AY634113, 12 Tuber_sp._ex._Quercus_North_Carolina_AY656959, 13 Tuber_sp._ex._EM_California_AY702816, 14 Tuber_sp._ex._California_2_DQ822837, 15 Tuber_sp._ex._Populus_Quebec_6_EU554690, 16 Tuber_sp._ex._Quercus_Mexico_2_EU563484, 17 Tuber_sp._ex._Pinus_sabiniana_Mexico_3_EU649090, 18 Tuber_sp._ex._Larix_decidua_Poland_3_EU931685, 19 Tuber_sp._ex._Larix_decidua_Poland_EU931686, 20 Tuber_sp._ex._Quercus_prinus_Maryland_2_FJ008031, 21 Tuber_sp._ex._Quercus_garryana_Oregon_2_FJ348396, 22 Tuber_sp._ex._Quercus_garryana_Oregon_FJ348398, 23 Tuber_sp._ex._Quercus_garryana_Oregon_FJ348402, 24 Tuber_sp._ex._Quercus_garryana_Oregon_FJ348403, 25 Tuber_sp._ex._Epipactis_LG10_New_York, 26 Tuber_anniae_JT22986_Washington_4, 27 Tuber_anniae_JT13209_Washington_Holotype, 28 Tuber_borchii_31_Italy_4, 29 Tuber_californicum_JT28058_California_5, 30 Tuber_cf_borchii_China, 31 Tuber_dryophilum_38_Italy_8, 32 Tuber_asa_M1828_Italy, 33 Tuber_GB298_Italy, 34 Tuber_JT19301_Quercus_Mexico, 35 Tuber_JT22713_Corylus_avellana_Washington, 36 Tuber_JT32421_Mexico, 37 Tuber_JT32470_Mexico_3, 38 Tuber_JT7347_California, 39 Tuber_latisporum_DQ898185_China_3, 40 Tuber_liui_DQ898182_China, 41 Tuber_menseri_JT11661_Oregon_18, 42 Tuber_pacificum_EU837241_Oregon_3, 43 Tuber_puberulum_AJ969625_Hungary_4, 44 Tuber_separans_JT7697_Oregon_7, 45 Tuber_dfmo0698_North_Carolina, 46 Tuber_sp._litter_North_Carolina_2_AY969316, 47 Tuber_shearii_JT9933_Oregon, 48 Tuber_sp2_DQ478621_China, 49 Tuber_sp3_DQ478624_China, 50 Tuber_sp4_DQ478627_China, 51 Tuber_sphaerosporum_JT12487_California_2, 52 Tuber_zhongdianense_DQ898186_China; TREE Fig._2 = [&R] (1,(((((((((((2,4),39),50),49),(((6,33),32),(17,(20,34)))),(29,51)),38),((3,30),48)),(12,46)),(((((5,((15,45),((16,36,37),(25,44)))),((9,43),(10,28))),(((7,47),(11,(26,27))),(13,(14,42)))),(((8,(22,24),23,35,41),21),18)),(40,52))),31),19); END; BEGIN TREES; TITLE Fig4_Rufum; LINK TAXA = Taxa3; TRANSLATE 1 Tuber_spinoreticulatum_U188_Maryland_isotype, 2 Tuber_sp._ex._Epipactis_helleborine_Japan_AB428788, 3 Tuber_sp._EM_Estonia_AJ893251, 4 Tuber_sp._ex._Epipactis_atrorubens_California_2_AY634152, 5 Tuber_sp._ex._Epipactis_helleborine_California_AY634153, 6 Tuber_sp._ex._Epipactis_helleborine_California_4_AY634169, 7 Tuber_sp._ex._Epipactis_helleborine_California_4_AY634170, 8 Tuber_sp._ex._Salix_caprea_Poland_AY748863, 9 Tuber_sp._ex._Corylus_North_Carolina, 10 Tuber_sp._ex._Populus_alba_Hungary_3_DQ355253, 11 Tuber_sp._ex._angiosperm_Italy_DQ402504, 12 Tuber_sp._ex._Quercus_California_2_EF559300, 13 Tuber_sp._ex._Quercus_California_2_EF559298, 14 Tuber_sp._JT1844_Oregon, 15 Tuber_sp._ex._Populus_tremula_Austria_2_EF644166, 16 Tuber_sp._ex._Quercus_douglasii_California_DQ974798, 17 Tuber_sp._ex._Quercus_douglasii_California_EF661992, 18 Tuber_sp._ex._Oregon_FJ789635, 19 Tuber_sp._ex._Quercus_garryana_Oregon_EU018589, 20 Tuber_sp._ex._Quercus_garryana_Oregon_EU018590, 21 Tuber_sp._ex._Quercus_Missouri_2_EU202705, 22 Tuber_sp._ex._Quercus_garryana_Oregon_EU334899, 23 Tuber_sp._ex._Quercus_garryana_Oregon_EU334900, 24 Tuber_sp._ex._Quercus_garryana_Oregon_FJ348404, 25 Tuber_sp._ex._Conifer_Oregon_FJ789634, 26 Tuber_sp._TH_Epipactis_HB5_New_York, 27 Tuber_sp._3_Mexico, 28 Tuber_candidum_AY830856_Oregon_7, 29 Tuber_ferrugineum_AF132506_France, 30 Tuber_huidongense_DQ478632_China_2, 31 Tuber_huidongense_DQ478645_China_2, 32 Tuber_JT11325_Quebec, 33 Tuber_JT17711_Quercus_Mexico, 34 Tuber_JT9559_Oregon, 35 Tuber_liaotongense_DQ478645_China_5, 36 Tuber_luomai_JT17457_Oregon, 37 Tuber_lyonii_JT5665_Texas_2, 38 Tuber_furfuraceum_FJ176920, 39 Tuber_malacodermum_32319_Spain, 40 Tuber_Missouri_nonumber, 41 Tuber_nitidum_BM105_Spain, 42 Tuber_quercicola_AY918957_Oregon, 43 Tuber_RH493_Iowa, 44 Tuber_RH8310775_Iowa, 45 Tuber_rufum_AY112894_Italy, 46 Tuber_rufum_var_lucidum_AZ2097_Italy, 47 Tuber_sp1_DQ478643_China, 48 Tuber_sp_RH922071_Iowa, 49 Tuber_taiyuanense_DQ478637_China, 50 Tuber_texense_JT15162_Texas, 51 Tuber_sp._China_DQ478675, 52 Tuber_sp._ex._Quercus_garryana_Oregon_EU018588, 53 Tuber_sp._ex._Quercus_Missouri_EU202709, 54 Tuber_sp._ex._Quercus_garryana_Oregon_FJ235159, 55 Tuber_sp._JT15106_Quebec; TREE Fig._4 = [&R] (1,(((((((2,((((4,29),((5,6),(10,45))),15),((8,49),(39,41)))),46),(((((7,54),(12,13),(19,((22,25),24))),(14,17,(20,23,28))),((18,34),42)),(11,51))),(((9,((43,48),53)),32),(16,((((30,31),38),35),33)))),((((21,37),44),(27,50)),40)),(36,52)),47),(3,26,55)); END; BEGIN TREES; TITLE Fig3_Maculatum; LINK TAXA = Taxa1; TRANSLATE 1 Tuber_multimaculatum_A200_Spain_Paratype, 2 Tuber_linsdalei_L63_Type_2, 3 Tuber_sp._ex._132b_Carya_Georgia_3, 4 Tuber_sp._ex._Epipactis_helleborine_Japan_2_AB428786, 5 Tuber_sp._ex._Populus_Germany_5_AJ510273, 6 Tuber_sp._ex._Salix_alba_Neatherlands_4_AJ920009, 7 Tuber_sp._ex._Salix_alba_Neatherlands_AJ920011, 8 Tuber_sp._ex._Epipactis_helleborine_California_AY634172, 9 Tuber_sp._ex._Epipactis_helleborine_California_AY634177, 10 Tuber_sp._ex._Quercus_garryana_Oregon_AY969006, 11 Tuber_sp._ex._Quercus_robur_Hungary_3_DQ355246, 12 Tuber_sp._ex._Populus_tremula_Austria_2_EF644167, 13 Tuber_sp._ex._Epipactis_helleborine_California_7, 14 Tuber_sp._ex._Quercus_Missouri_3_EU202706, 15 Tuber_sp._ex._Quercus_Missouri_2_EU202710, 16 Tuber_sp._ex._clone_Alaska_2_EU2922221, 17 Tuber_sp._ex._Epipactis_J8_New_York_3, 18 Tuber_beyelerii_JT32597_Oregon_3, 19 Tuber_foetidum_JT9769_Nepal, 20 Tuber_ITCV142_Mexico_2, 21 Tuber_ITCV4026_Mexico, 22 Tuber_ITCV4739_Mexico, 23 Tuber_ITCV885_Mexico, 24 Tuber_lauryi_JT26987_Oregon_13, 25 Tuber_maculatum_AJ557519_2, 26 Tuber_rapaeodorum_AJ557522_Hungary_42, 27 Tuber_foetidum_AJ557544_Hungary, 28 Tuber_sancarloensis_Type_ITCV181_Mexico_7, 29 Tuber_setatus_Type_ITCV180_Mexico_3, 30 Tuber_shearii_JT12498_North_Carolina, 31 Tuber_whetstonense_JT25783_Oregon_Paratype_10; TREE Fig._3c = [&R] (1,((((2,18),(((6,7),((12,((21,23),28)),16)),(10,31))),((5,19),(9,((13,29),(20,22))))),11),((((3,14),30),((8,24),(15,17))),((4,27),(25,26)))); TREE Fig._3b = [&R] (1,(((2,18),(((5,19),(9,((13,29),(20,22)))),(((6,7),((12,((21,23),28)),16)),(10,31)))),11),((((3,14),30),((8,24),(15,17))),((4,27),(25,26)))); TREE Fig._3a = [&R] (1,((((2,18),((5,19),(9,((13,29),(20,22))))),(((6,7),((12,((21,23),28)),16)),(10,31))),11),((((3,14),30),((8,24),(15,17))),((4,27),(25,26)))); END; BEGIN TREES; TITLE Fig1_ITS_GuideTree; LINK TAXA = Taxa4; TRANSLATE 1 Dingleya_sp_JT31575_Australia, 2 Labyrinthomyces_sp_JT27750_Australia, 3 Reddellomyces_sp_JT27724_Australia, 4 Reddellomyces_sp_JT6873_Australia, 5 Choiromyces_alveolatus_97, 6 Choiromyces_alveolatus_HS2886, 7 Choiromyces_meandriformis_DL_Oregon, 8 Choiromyces_meandriformis_RH691_Iowa, 9 Tuber_anniae_JT13209_Washington_holotype, 10 Tuber_anniae_JT22695_Oregon, 11 Tuber_asa_M1828_Italy, 12 Tuber_bellisporum_nom_prov_JT11679_Oregon_holotype, 13 Tuber_bellisporum_nom_prov_JT7270_Oregon_paratype, 14 Tuber_beyeleri_JT32597_Oregon, 15 Tuber_borchii_GB14_Italy, 16 Tuber_borchii_GB1_Italy, 17 Tuber_brumale_GB21_Italy, 18 Tuber_brumale_GB22_Italy, 19 Tuber_californicum_JT28058_California, 20 Tuber_canaliculatum_JT28215_New_Jersey, 21 Tuber_canaliculatum_OSC59072_West_Virginia, 22 Tuber_castellanoi_nom_prov_JT19924_California_paratype, 23 Tuber_castellanoi_nom_prov_JT28069_California_holotype, 24 Tuber_cf_borchii_China, 25 Tuber_dryophilum_GB35_Italy, 26 Tuber_dryophilum_GB37_Italy, 27 Tuber_latisporum_DQ898185_China, 28 Tuber_liui_DQ898182_China, 29 Tuber_pacificum_EU837241_Oregon, 30 Tuber_separans_JT7697_Oregon, 31 Tuber_menseri_nom_prov_JT11661_Oregon, 32 Tuber_puberulum_AJ969625_Hungary, 33 Tuber_zhongdianense_DQ898186_China, 34 Tuber_sp3_DQ478624_China, 35 Tuber_sp4_DQ478627_China, 36 Tuber_excavatum_BM100_Spain, 37 Tuber_excavatum_OSC80639_Italy, 38 Tuber_sp._ex._Epipactis_microphylla_Hungary_AM999885, 39 Tuber_sp._ex._Epipactis_microphylla_France_AY286191, 40 Tuber_ferrugineum_MA2721_Italy, 41 Tuber_fulgens_M2435_Italy, 42 Tuber_gennadii_BM667_Spain, 43 Tuber_gennadii_JT9627_Spain_paratype, 44 Tuber_gennadii_M1904_Italy, 45 Tuber_gibbosum_JT26632_Washington, 46 Tuber_gibbosum_JT30580_Oregon, 47 Tuber_indicum_A_GB236_China, 48 Tuber_indicum_A_GB240_China, 49 Tuber_formosanum_FJ176917, 50 Tuber_indicum_B_GB237_China, 51 Tuber_indicum_B_JT29410_Oregon, 52 Tuber_lyonii_GA21_Georgia, 53 Tuber_lyonii_OSC58244_Texas, 54 Tuber_macrosporum_JT13362_Italy, 55 Tuber_sp_RH73_Iowa, 56 Tuber_aestivum_JT30500_Sweden, 57 Tuber_sp._ex._Epipactis_microphylla_France_AY286194, 58 Tuber_sp._ex._Cephalanthera_damasonium_France_AY83304, 59 Tuber_magnatum_JT19460_Italy, 60 Tuber_sp._ex._Angiosperm_Italy_AJ879679, 61 Tuber_sp._ex._Angiosperm_sp._Italy_AJ879687, 62 Tuber_malacodermum_JT32319_Spain, 63 Tuber_melanosporum_GB200_Italy, 64 Tuber_mesentericum_CW105_Sweden, 65 Tuber_multimaculatum_OSC62169_Spain_paratype, 66 Tuber_nitidum_BM105_Spain, 67 Tuber_oregonense_nom_prov_GB284_Oregon_holotype, 68 Tuber_oregonense_nom_prov_JT27985_Oregon_paratype, 69 Tuber_panniferum_JT12835_Spain, 70 Tuber_pseudoexcavatum_CJ408_China, 71 Tuber_regimontanum_ITCV909_Mexico_holotype, 72 Tuber_rufum_GB213_Italy, 73 Tuber_texense_JT15162_Texas, 74 Tuber_furfuraceum_FJ176920, 75 Tuber_luomai_JT6003_Oregon_Holotype, 76 Tuber_liaotongense_DQ478645_China, 77 Tuber_candidum_AY830856_Oregon, 78 Tuber_quercicola_AY918957_Oregon, 79 Tuber_huidongense_DQ478632_China, 80 Tuber_taiyuanense_DQ478637_China, 81 Tuber_sancarloensis_ITCV181_Mexico_holotype, 82 Tuber_foetidum_AJ557544_Hungary, 83 Tuber_lauryi_nom_prov_JT26987_Oregon, 84 Tuber_rapaeodorum_AJ557522_Hungary, 85 Tuber_whetstonense_JT25783_Oregon_Paratype, 86 Tuber_maculatum_AM406673, 87 Tuber_sancarloensis_nom_prov_ITCV885_Mexico, 88 Tuber_shearii_JT12498_North_Carolina, 89 Tuber_shearii_OSC51052_North_Carolina, 90 Tuber_sphaerosporum_JT12487_Oregon, 91 Tuber_sphaerosporum_JT19772_Oregon, 92 Tuber_sp_JT28121_Japan, 93 Tuber_spinoreticulatum_U188_Maryland_isotype; TREE PAUP_1 = [&R] (1,2,((3,4),((5,6),(7,(8,(((((((((((((9,10),(15,16)),30,31),(29,32)),(11,24),(28,33)),(19,(90,91))),(25,26)),((27,34),35)),((((14,85),(81,87)),83),(82,((84,86),(88,89))))),(((12,13),((45,46),(67,68))),(22,23))),((20,21),54)),(((((((17,18),((((47,48),((49,50,51),63)),71),70)),(55,92)),65),(((((((((40,72),(77,78)),((74,79),76)),80),62),66),(52,(53,73))),75),93)),((((56,57,58),64),69),(59,60,61))),((36,(37,38,39)),41))),((42,43),44))))))); TREE PAUP_10 = [&R] (1,2,((3,4),((5,6),(7,(8,(((((((((((((9,10),(15,16)),30,31),29,32),(11,24),(28,33)),(19,(90,91))),(25,26)),((27,34),35)),((((14,85),(81,87)),83),(82,((84,86),(88,89))))),(((12,13),((45,46),(67,68))),(22,23))),((20,21),54)),(((((((17,18),((((47,48),((49,50,51),63)),71),70)),(55,92)),65),((((((((40,72),((74,79),76),(77,78)),80),62),66),(52,(53,73))),75),93)),((((56,57,58),64),69),(59,60,61))),((36,(37,38,39)),41))),((42,43),44))))))); TREE PAUP_9 = [&R] (1,2,((3,4),((5,6),(7,(8,(((((((((((((9,10),(15,16)),30,31),29,32),(11,24),(28,33)),(19,(90,91))),(25,26)),((27,34),35)),((((14,85),(81,87)),83),(82,((84,86),(88,89))))),(((12,13),((45,46),(67,68))),(22,23))),((20,21),54)),(((((((17,18),((((47,48),((49,50,51),63)),71),70)),(55,92)),65),((((((((40,72),((74,79),76),(77,78)),80),62),(52,(53,73))),66),75),93)),((((56,57,58),64),69),(59,60,61))),((36,(37,38,39)),41))),((42,43),44))))))); TREE PAUP_8 = [&R] (1,2,((3,4),((5,6),(7,(8,(((((((((((((9,10),(15,16)),30,31),29,32),(11,24),(28,33)),(19,(90,91))),(25,26)),((27,34),35)),((((14,85),(81,87)),83),(82,((84,86),(88,89))))),(((12,13),((45,46),(67,68))),(22,23))),((20,21),54)),(((((((17,18),((((47,48),((49,50,51),63)),71),70)),(55,92)),65),(((((((40,72),((74,79),76),(77,78)),80),62),(52,(53,73)),66),75),93)),((((56,57,58),64),69),(59,60,61))),((36,(37,38,39)),41))),((42,43),44))))))); TREE PAUP_7 = [&R] (1,2,((3,4),((5,6),(7,(8,((((((((((((((9,10),(15,16)),(30,31)),29,32),(28,33)),(11,24)),(19,(90,91))),(25,26)),((27,34),35)),((((14,85),(81,87)),83),(82,((84,86),(88,89))))),(((12,13),((45,46),(67,68))),(22,23))),((20,21),54)),(((((((17,18),((((47,48),((49,50,51),63)),71),70)),(55,92)),65),(((((((((40,72),(77,78)),((74,79),76)),80),62),66),(52,(53,73))),75),93)),((((56,57,58),64),69),(59,60,61))),((36,(37,38,39)),41))),((42,43),44))))))); TREE PAUP_6 = [&R] (1,2,((3,4),((5,6),(7,(8,(((((((((((((9,10),(15,16)),30,31),(29,32)),(11,24),(28,33)),(19,(90,91))),(25,26)),((27,34),35)),((((14,85),(81,87)),83),(82,((84,86),(88,89))))),(((12,13),((45,46),(67,68))),(22,23))),((20,21),54)),(((((((17,18),((((47,48),((49,50,51),63)),71),70)),(55,92)),65),((((((((40,72),((74,79),76),(77,78)),80),62),66),(52,(53,73))),75),93)),((((56,57,58),64),69),(59,60,61))),((36,(37,38,39)),41))),((42,43),44))))))); TREE PAUP_5 = [&R] (1,2,((3,4),((5,6),(7,(8,(((((((((((((9,10),(15,16)),30,31),(29,32)),(11,24),(28,33)),(19,(90,91))),(25,26)),((27,34),35)),((((14,85),(81,87)),83),(82,((84,86),(88,89))))),(((12,13),((45,46),(67,68))),(22,23))),((20,21),54)),(((((((17,18),((((47,48),((49,50,51),63)),71),70)),(55,92)),65),((((((((40,72),((74,79),76),(77,78)),80),62),(52,(53,73))),66),75),93)),((((56,57,58),64),69),(59,60,61))),((36,(37,38,39)),41))),((42,43),44))))))); TREE PAUP_4 = [&R] (1,2,((3,4),((5,6),(7,(8,(((((((((((((9,10),(15,16)),30,31),(29,32)),(11,24),(28,33)),(19,(90,91))),(25,26)),((27,34),35)),((((14,85),(81,87)),83),(82,((84,86),(88,89))))),(((12,13),((45,46),(67,68))),(22,23))),((20,21),54)),(((((((17,18),((((47,48),((49,50,51),63)),71),70)),(55,92)),65),((((((((40,72),(77,78)),((74,79),76)),80),62),(52,(53,73)),66),75),93)),((((56,57,58),64),69),(59,60,61))),((36,(37,38,39)),41))),((42,43),44))))))); TREE PAUP_3 = [&R] (1,2,((3,4),((5,6),(7,(8,((((((((((((((9,10),(15,16)),(30,31)),(29,32)),(28,33)),(11,24)),(19,(90,91))),(25,26)),((27,34),35)),((((14,85),(81,87)),83),(82,((84,86),(88,89))))),(((12,13),((45,46),(67,68))),(22,23))),((20,21),54)),(((((((17,18),((((47,48),((49,50,51),63)),71),70)),(55,92)),65),(((((((((40,72),(77,78)),((74,79),76)),80),62),66),(52,(53,73))),75),93)),((((56,57,58),64),69),(59,60,61))),((36,(37,38,39)),41))),((42,43),44))))))); TREE PAUP_2 = [&R] (1,2,((3,4),((5,6),(7,(8,(((((((((((((9,10),(15,16)),30,31),29,32),(11,24),(28,33)),(19,(90,91))),(25,26)),((27,34),35)),((((14,85),(81,87)),83),(82,((84,86),(88,89))))),(((12,13),((45,46),(67,68))),(22,23))),((20,21),54)),(((((((17,18),((((47,48),((49,50,51),63)),71),70)),(55,92)),65),(((((((((40,72),(77,78)),((74,79),76)),80),62),66),(52,(53,73))),75),93)),((((56,57,58),64),69),(59,60,61))),((36,(37,38,39)),41))),((42,43),44))))))); TREE PAUP_13 = [&R] (1,2,((3,4),((5,6),(7,(8,((((((((((((((9,10),(15,16)),(30,31)),(29,32)),(28,33)),(11,24)),(19,(90,91))),(25,26)),((27,34),35)),((((14,85),(81,87)),83),(82,((84,86),(88,89))))),(((12,13),((45,46),(67,68))),(22,23))),((20,21),54)),(((((((17,18),((((47,48),((49,50,51),63)),71),70)),(55,92)),65),((((((((40,72),((74,79),76),(77,78)),80),62),66),(52,(53,73))),75),93)),((((56,57,58),64),69),(59,60,61))),((36,(37,38,39)),41))),((42,43),44))))))); TREE PAUP_12 = [&R] (1,2,((3,4),((5,6),(7,(8,((((((((((((((9,10),(15,16)),(30,31)),(29,32)),(28,33)),(11,24)),(19,(90,91))),(25,26)),((27,34),35)),((((14,85),(81,87)),83),(82,((84,86),(88,89))))),(((12,13),((45,46),(67,68))),(22,23))),((20,21),54)),(((((((17,18),((((47,48),((49,50,51),63)),71),70)),(55,92)),65),((((((((40,72),((74,79),76),(77,78)),80),62),(52,(53,73))),66),75),93)),((((56,57,58),64),69),(59,60,61))),((36,(37,38,39)),41))),((42,43),44))))))); TREE PAUP_11 = [&R] (1,2,((3,4),((5,6),(7,(8,((((((((((((((9,10),(15,16)),(30,31)),(29,32)),(28,33)),(11,24)),(19,(90,91))),(25,26)),((27,34),35)),((((14,85),(81,87)),83),(82,((84,86),(88,89))))),(((12,13),((45,46),(67,68))),(22,23))),((20,21),54)),(((((((17,18),((((47,48),((49,50,51),63)),71),70)),(55,92)),65),((((((((40,72),(77,78)),((74,79),76)),80),62),(52,(53,73)),66),75),93)),((((56,57,58),64),69),(59,60,61))),((36,(37,38,39)),41))),((42,43),44))))))); END;