#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 19, 2024; 13:56 GMT TreeBASE (cc) 1994-2008 Study reference: Salvi D., Bellavia G., Cervelli M., & Mariottini P. 2010. The analysis of rRNA sequence-structure in phylogenetics: An application to the family Pectinidae (Mollusca: Bivalvia). Molecular Phylogenetics and Evolution, 56(3): 1059-1067 . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S13548] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=26; TAXLABELS Aequipecten_opercularis_1 Aequipecten_opercularis_2 Amusium_pleuronectes Argopecten_irradians_ Azumapecten_farreri Flexopecten_flexuosus Flexopecten_glaber_1 Flexopecten_glaber_2 Manupecten_pesfelis_1 Manupecten_pesfelis_2 Mimachlamys_nobilis Mimachlamys_varia_1 Mimachlamys_varia_2 Mizuhopecten_yessoensis Pecten_jacobaeus_1 Pecten_jacobaeus_2 Pecten_keppelianus_1 Pecten_keppelianus_2a Pecten_keppelianus_2b Pecten_maximus_1 Pecten_maximus_2 Pecten_novaezelandiae Semipallium_fulvicostata Spondylus_gaederopous Talochlamys_multistriata Talochlamys_pusio ; END; BEGIN TAXA; TITLE Taxa2; DIMENSIONS NTAX=22; TAXLABELS Aequipecten_opercularis_1 Amusium_pleuronectes Azumapecten_farreri Flexopecten_flexuosus Flexopecten_glaber_1 Manupecten_pesfelis_1 Manupecten_pesfelis_2 Mimachlamys_nobilis Mimachlamys_varia_1 Mimachlamys_varia_2 Mizuhopecten_yessoensis Pecten_jacobaeus_1 Pecten_jacobaeus_2 Pecten_keppelianus_1 Pecten_keppelianus_2 Pecten_maximus_1 Pecten_maximus_2 Pecten_novaezelandiae Semipallium_fulvicostata Spondylus_gaederopous Talochlamys_multistriata Talochlamys_pusio ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M14847] TITLE ITS2; LINK TAXA = Taxa1; DIMENSIONS NCHAR=383; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Aequipecten_opercularis_1 AAAACATCTATCGCAA--CTGCATGCACATACA--GC------GTTGCGCCTTGGATCGTACAACTCCACGTACGCCGTATTTCGA----------------GACGGAAACGAGGAGCGATCCCAA-ATGCAA-----TCGTCCCATCTCATAAAAAGC---CTAACCGAGTAGTTCGGTGTTGAAATCGCCCGTTTAACGG-ACGA-CCGAGA--CGCAGCTCGAAT--ATTAATCAAGTGCGCTCG---------------ACTGTTCAAAAAACC-------------------TTTGTGTGGTG-TTATTT-TCATTGGCC-----------GATGAA-------------GACGTTAAAAAAAA-----ATCAAAACC Aequipecten_opercularis_2 AAAACATCTATCGCAA--CTGCATGCACATACA--GC------GTTGCGCCTTGGATCGTACAACTCCACGTACGCCGTATTTCGA----------------GACGGAAACGAGGAGCGATCCCAA-ATGCAA-----TCGTCCCATCTCATAAAAAGC---CTAACCGAGTAGTTCGGTGTTGAAATCGCCCGTTTAACGG-ACGA-CCGAGA--CGCAGCTCGAAT--ATTAATCAAGTGCGCTCG---------------ACTGTTCAAAAAACC-------------------TTTGTGTGGTG-TTATTT-TCATTGGCT-----------GATGAA-------------GACGTTAAAAAAAA-----ATCAAAACC Amusium_pleuronectes GAAACATCTATCGCAA--CGTTATGCACACATCAAGC------GTTGCGCCTTGGACCGTACTAACTCCGTGTCGATTGCGCGTTGT---------------CGTGGCA-CGCGGAGCGGTCCGAA-ATGTTGAC-GATCGGAGTAAATTTCACACA-------GACCGAGTAGTTCGGTGTTGAGATCGCCC--GCAACGGGACGA-CAGAGA--CGCAGCTCGAAT--CATATCAA-GTGCGCTCG---------------ACTGTCTCGCGAATC---------------GAAGGGCCTTTTCAAGT-GAGACTCCGTGAAG------------------------------TCGTTTTTCAATCTT--TTTT-----TC Argopecten_irradians_ AGAATATCTATCGCAA--CTGCATGCACAT--GAAGC------GTTGCGCCTTGGACCGTACATCTCCACGTTTGTTTGCTTGAGA----------------AACGATA-CGAGGAGCGGTCTCAA-ATACACA---GTCGCATCATCGTTCGCCAAA----AAAACCGAGTAGTTCGGTGTTGAAATCGTCCGTGAAACGGAACGA-CCGAGA--CGCAGCTCGAAT-GATCAATCAAGTGCGCTCG---------------ACTGTTCCCGATGAA-------------------CATGTG-GGCA-TCATGG-T-ATCGGCG-----------ATGAGA-------------CTGACAAAAAAAACTC--TATCAAAAAC Azumapecten_farreri AAAACATCTATCGCAAC-CTGCATGCACAGCAG---C------ATTGCGCCTTGGACCG---------TCTCGTCTCCCCG-------------------------------GCGAGCGGTCTTAA-ATGAGGA---ATCAGAGTCTC-----CAATCG---AACCAAAAACAAACCAGTACG-------------GAACAAATT-A-C-AAGAGACGCAGTTCGATT-AA-ACACAAAATGCGCTCTCGGTTCC--GTGAA-ACTGTAG-GTTCGCCT--TTTACATGTGAA--AAAAAAGGT---A-TGATGGT---GTAAATTTCTCTGGTCGACACAA-------------CACTTTGTGTTTGTCT--TTTCACAC-- Flexopecten_flexuosus AAAACATCTATCGCAA--CTGCGTGC--ATACGAAGC------GTTGCGCCTTGGACCGTATATCTCCTCGTCCGCCGT--TTTGT----------------GACGGCA-CGGGGAGCGGTCCCAA-ATGCA------TGTTTCCATC--ATAAAAG-----CCAACCGAGTAGTTCGGTGTTGAAATCGCCC-TTGAAGGG-ACGAACCGAGA--CGCAGCTCGAAT--AACAATCAAGTGCGCTCG---------------ACTGTTCCCGAA-----------------------------GGCG-TTTTTC-TGACAGGCG-----------ATGGAA-------------CACTTTGAA-----------TCAAAACC Flexopecten_glaber_1 AAAACATCTATCGCAA--CTGCGTGC--ATACGAAGC------GTTGCGCCTTGGACCGTACATCTCCTCGTCCGCCGT--TTTGT----------------GACGGCA-CGGGGAGCGGTCCCAA-ATGCA------TGTTTCCATC--ATAAAAG-----CCAACCGAGTAGTTCGGTGTTGAAATCGCCC-TTGAAGGG-ACGA-CCGAGA--CGCAGCTCGAAT--AACAATCAAGTGCGCTCG---------------ACTGTTCCCGAA-----------------------------GGCG-TTTTTC-TGACAGGCG-----------ATGGAA-------------CACTTTGAA-----------TCAAAACC Flexopecten_glaber_2 AAAACATCTATCGCAA--CTGCGTGC--ATACGAAGC------GTTGCGCCTTGGACCGTACATCTCCTCGTCCGCCGT--TTTGT----------------GACGGCA-CGGGGAGCGGTCCCAA-ATGCA------TGTTTCCATC--ATAAAAG-----CCAACCGAGTAGTTCGGTGTTGAAATCGCCC-TTGAAGGG-ACGA-CCGAGA--CGCAGCTCGAAT--AACAATCAAGTGCGCTCG---------------ACTGTTCCCGAA-----------------------------GGCG-TTTTTC-TGACAGGCG-----------ATGGAA-------------CACTTTGAA-----------TCAAAACC Manupecten_pesfelis_1 AAAACATCTATCGCAAA-CTGCATGCACATCAG---C------TTTGCGCCTTGGACCGGTTTTTACTGCCGTATTTGTTTATTTA----------------TAAGCAAAGAGGCAGCGGTCTTAAGAAAAAAA---GTCAGAGTCTC-----CAA------AATATTGAACGACATGTACAGCCCAGTGC----GGAACAAAAC-A-C-GAGAGACGCAGCTCGATA-GA--GATAAAATGCGCTGTCGGGTGT---TCCAAACTGAAATACGGGCC-------------------AACACATGAAC---AAACTGAAATGGTTTTTTTTTGGTGGTGTAA-------------TTCTCTGTCCTTAAAC-ATTTCTCACT- Manupecten_pesfelis_2 AAAACATCTATCGCAAA-CTGCATGCACATCAG---C------TTTGCGCCTTGGACCGGTTTTTACTGCCGTATTTGTTTATTTA----------------TAAGCAAAGAGGCAGCGGTCTTAAGAAAAAAA---GTCAGAGTCTC-----CAA------AATATTGAACGACATGTACAGCCCAGTGC----GGAACAAAAC-A-C-GAGAGACGCAGCTCGATA-GA--GATAAAATGCGCTGTCGGGTGT---TCCAAACTGAAATACGGGCC-------------------AACACATGAAC---AAACTGAAATGGTTTTTTTTTGGTGGTGTAA-------------TTCTCTGTCCTTAAAC-ATTTCTCACT- Mimachlamys_nobilis AAAACATCTATCGCAAA-CTGCGGGCACAGCAG---C------ATTGCGCCTTGGACCG---------TACATCTCATCTCCCCG--------------------------GGTGAGCGGTCCTAA-ATGACAA---ATCAGAGTCTC-----CAGGCA---AACGGTAAACACATCC-AGTA-------C----GGAACAAA---A-C--AGAGACGCAGCTCGGTTGC---TATGAATTGCGCTCC---------AAGTATCCGGGATTGTTGACC-----------TGAA----AATATGTTTGC-CAACTAGCAGGTGAATCAAAAATATTGACGAAA----------------TTTTTTTT--------CTCACTC-- Mimachlamys_varia_1 ATAACATCTATCGCAAA-CTGCATGCACAGCAG---C------GTTGCGCCTTGGGCCG---------TATACCTCTCATTGACT--------------------------TGGGAGCGGTCTCAA-ATGACGA---ATCAGAGTCTC-----CTAGCG---AATGCACGGGCAAACGAAATATCCAGTAT----GGGACATAAA-T-C-GAGAGACGCAGCTCGATG-CA--CATGAAATGCGCTCCCGGGTTCCGATAAGTACTGATC-GTTCTGTCAGTTCGCAAATAAAAGATCCAATGTGAAG-TGATCAAACGGTGTAATGCTCTGTTCGGCAGAA----------------TTAATTTTTTGCC--TTTCACAC-- Mimachlamys_varia_2 ATAACATCTATCGCAAA-CTGCATGCACAGCAG---C------GTTGCGCCTTGGGCCG---------TATACCTCTCATTGACT--------------------------TGGGAGCGGTCTCAA-ATGACGA---ATCAGAGTCTC-----CTAGCG---AATGCACGGGCAAACGAAAAATCCAGTAT----GGAACATAAA-T-C-GAGAGACGCAGCTCGATG-CA--CATGAAATGCGCTCCCGGGTTCCGATAAGTACTGATC-GTTCTGTCAGTTCGCAAATAAAAGATCCAATGTGAAG-TGATCAAACGGTGTAATGCTCTGTTCGGCAGAA----------------TTAATTTTTTGCC--TTTCACAC-- Mizuhopecten_yessoensis AAAACATCTATCGCAAA-CTGCATGCACGTCAG---C------GTTGCGCCTTGGACCG---------TACATCTCCTCCTTACTTA----------------------AGGGGGAGCGGTCTCAA-ATGATGA---ATCAGAGTCTC-----CAAGCG---AACGTAGCAAAAACCCCGGTAAA-AAAAC----GGAACATTTA-A-C--AGAGACGCAGCTCGATG-CA---CAAACATGCGCTCTCAGTTTCCAAAAAGAAAGGGGGCGTTCAAT----------ATGA------AAATGT---G-AGAAAAT---ATAAAAGCTT----TCGGCACGT-------------T-TTGTTTTACGAGCC--TTTCACAC-- Pecten_jacobaeus_1 AAAACATCTATCGCAA--CGGTATGCACATAAC--G--------TTGCGCCTTGGGCCGTACAACTCCACGTCGATTGATTGTTTT----------------CATGGTA-CGAGGAGCGGTCCCAA-ATGTTTTCTGATCGGAGGTGCTTTTACGCACG---ACAACCGAGTAGTTCGGTGTTGAAATCGCCC--AGAACGGGACGA-CAGAGA--CGCAGCTCGAAT--CACATCAGTGTGCGCTCG---------------AATGTCACCGTCACT-------------------GACGTTTTCA-GTTGAGACTCCGTGAAG-----------GCCAAA-------------CCATTTATCGAAAATG--AATCAC--TT Pecten_jacobaeus_2 AAAACATCTATCGCAA--CGGTATGCACATAAC--G--------TTGCGCCTTGGGCCGTACAACTCCACGTCGATTGATTGTTTT----------------CATGGTA-CGGGGAGCGGTCCCAA-ATGTTTTCTGATCGGAGGTGCTTTTACGCACG---ACAACCGAGTAGTTCGGTGTTGAAATCGCCC--AGAACGGGACGA-CAGAGA--CGCAGCTCGAAT--CACATCAGTGTGCGCTCG---------------AATGTCACCGTCACT-------------------GACGTTTTCA-GTTGAGACTCCGTGAAG-----------GCCAAA-------------CCATTTATCGAAAATG--AATCAC--TT Pecten_keppelianus_1 AAAACATCTATCGCAA--CGGTATGCACATAAC--GC------GTTGCGCCTTGGGCCGTACAACTCCACGTCGATTGATTGTTTT----------------CATGGTA-CGGGGAGCGGTCCCAA-ATGTTACCTGATCGGAGGTGCTTT-ACGCACG---ACAACCGAGTAGTTCGGTGTTGAAATCGCCC--AGAACGGGACGA-CAGAGA--CGCAGCTCGAAT--CACATCAGTGTGCGCTCG---------------AATGTCACCGTCACT-------------------GACGTTTTCA-GTTGAGACTCCGTGAAG-----------GCCAAA------------------------AATTG--AATCAC--TT Pecten_keppelianus_2a AAAACATCTATCGCAA--CGGTATGCACATAAC--GC------GTTGCGCCTTGGGCCGTACAACTCCACGTCGATTGATTGTTTT----------------CATGGTA-CGGGGAGCGGTCCCAA-ATGTTACCTGATCGGAGGTGCTTT-ACGCACG---ACAACCGAGTAGTTCGGTGTTGAAATCGCCC--AGAACGGGACGA-CAGAGA--CGCAGCTCGAAT--CACATCAGTGTGCGCTCG---------------AATGTCACCGTCACT-------------------GACGTTTTCA-GTTGAGACTCCGTGAAG-----------GCCAAA------------------------AATTG--AATCAC--TT Pecten_keppelianus_2b AAAACATCTATCGCAA--CGGTATGCACATAAC--GC------GTTGCGCCTTGGGCCGTACAACTCCACGTCGATTGATTGTTTT----------------CATGGTA-CGAGGAGCGGTCCCAA-ATGTTACCTGATCGGAGGTGCTTT-ACGCACG---ACAACCGAGTAGTTCGGTGTTGAAATCGCCC--AGAACGGGACGA-CAGAGA--CGCAGCTCGAAT--CACATCAGTGTGCGCTCG---------------AATGTCACCGTCACT-------------------GACGTTTTCA-GTTGAGACTCCGTGAAG-----------GCCAAA------------------------AATTG--AATCAC--TT Pecten_maximus_1 AAAACATCTATCGCAA--CGGTATGCACATAAC--G--------TTGCGCCTTGGGCCGTACAACTCCACGTCGATTGATTGTTTT----------------CATGGTA-CGAGGAGCGGTCCCAA-ATGTTTTCTGATCGGAGGTGCTTTTACGCACG---ACAACCGAGTAGTTCGGTGTTGAAATCGCCC--AGAACGGGACGA-CAGAGA--CGCAGCTCGAAT--CACATCAGTGTGCGCTCG---------------AATGTCACCGTCACT-------------------GACGTTTTCA-GTTGAGACTCCGTGAAG-----------GCCAAA-------------CCATTTATCGAAAATG--AATCAC--TT Pecten_maximus_2 AAAACATCTATCGCAA--CGGTATGCACATAAC--G--------TTGCGCCTTGGGCCGTACAACTCCACGTCGATTGATTGTTTT----------------CATGGTA-CGAGGAGCGGTCCCAA-ATGTTTTCTGATCGGAGGTGCTTTTACGCACG---ACAACCGAGTAGTTCGGTGTTGAAATCGCCC--GGAACGGGACGA-CAGAGA--CGCAGCTCGAAT--CACATCAGTGTGCGCTCG---------------AATGTCACCGTCACT-------------------GACGTTTTCA-GTTGAGACTCCGTGAAG-----------GCCAAA-------------CCATTTATCGAAAATG--AATCAC--TT Pecten_novaezelandiae AAAACATCTATCGCAA--CGGTATGCACATAAC--GC------GTTGCGCCTTGGGCCGTACAACTCCACGTCGATTGATTGTTTT----------------CATGGCA-CGAGGAGCGGTCCCAA-ATGTTACCTGATCGGAGGTGCTTT-ACGCACG---ACAACCGAGTAGTTCGGTGTTGAAATCGCCC--AGAACGGGACGA-CAGAGA--CGCAGCTCGAAT--CACATCAGTGTGCGCTCG---------------AATGTCACCGTCACT-------------------GACGTTTTCA-GTTGAGACTCCGTGAAG-----------GCCAAA-------------------------AT-G--AATCAC--TT Semipallium_fulvicostata AAAACATCTATCGCAAA-CTGCAGGCACGTCAG---C------TTTGCGCCTTGGACCGGTTT---CTGTCGCATTTGTC-GGTAG----------------TGACGAGAGCGGCAGCGGTCTTAAGAAAAAAA---GTCAGAGTCTC-----CAG------AACA--------CATGTTGTGCCCAGCGA----GAGACA-------------GACGCAGGTCGATT-T---GATTAAATGCGCTGTCTT---------TG-AC----ATACGGGGGCC-----------------AACAAATTAAC-TAAAAGTGAAAAAAGTT---------GGTGTAA-------------TTCTCTGGCACGAAACGAGTTCTTACTC Spondylus_gaederopous TGAATTTCCATCGCAGAGGCGTAGGCAAATGGCATGCCGCGCAACTGCGCCTTGGATCGAAAAACTTCCAACCCCCCCTTATTTGGGGGGTAGGGGAAGCGGTCCCAAGTTGAACAACGAACTTGCACTAACTGCTTTCGAGCGTTCGGGGTCTCGGCATATTTTGCCTCCGGCAACCGCAGTCGGAAAGTTGCCCGGGCGGGGCAGAC---GAGACGCAGGTCGGTG---ACAAAAACGTGCGCTCTC-------------GCCCGTCCATGAAAAA------------GGGTATACTCCCCGGGCTGTGCTCTGGGA-------------GCCGGCTGGTGGTCGAGATTTGTTCGACTCGCTCAAAGCA-TTTCTTTCTT Talochlamys_multistriata ATAACATCTATCGCAAA-CTGCATGTACAGCAG---C------GTTGCGCCTTGGGCCG---------TATAACTCTCGTGTGGTAA----------------------A-TGAGAGCGGTCTCAA-ATAACGA---ATCAGAGTCTC-----CGAGCG---AACGCAGTTTGAGACGAAATA--------------AATTCAGT-A-C-GAGAGACGCAGCTCGATT-TG-----TGAAATGCGCTCTCAC------ACATGTACTGTGATTTTCGTTGAGTTCGCCAATGA---ATCAAATGT----ATGAAAACTCGGTGTAATTCTCTGCTCGGCA-A-------------T---ATGATTGCCTT----TTCACAC-- Talochlamys_pusio ATAACATCTATCGCAAA-CTGCGTGTACAGCAG---C------GTTGCGCCTTGGGCCG---------TATAACTCTCGTGTGGTAA----------------------A-TGAGAGCGGTCTCAA-ATAACGA---ATCAGAGTCTC-----CGAGCG---AACGCAGTTTGAGACGAAATA--------------AATTCAGT-A-C-GAGAGACGCAGCTCGATT-TG-----TGAAATGCGCTCTCAT------ATATGTACTGTGATTT-CGTTGAGTTCGCCAATGA---ATCAAATGT----ATGAAAACTCGGTGTAATTCTCTGCTCGGCATA-------------T---ATAATTGCCTG----TTCACAC-- ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M14845] TITLE 16S; LINK TAXA = Taxa2; DIMENSIONS NCHAR=665; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Aequipecten_opercularis_1 CGCCTG-TTTATCAAAAACATGG-CCTACTGTAT-TTATAGTAGGTCG-TTCCTTCCC-AGTGAGAT---GA-CTTAAACGGATGCGGTAAAGCGTGCTAAGGTAGCTAAATTA-TGGCCCTCTAATTGGGGGCCCT----------GTGAATGGATTGACGAGCCTATAACTGTCTCTAGCT---GAATTATATGAAATTGAATTTTAAGTGCAAATGCTTAAATATAAGTGATAGACGAGAAGACCCCGTGAAGTTGTTAACT----AAGTGGCA-GAAATTTCT-------------------------------------------TACCAC--------------------------------------------TTTTGTT-------GTT--GGCTGGGGCAGCAAAAGAGCAAGATCAGACTCTTTCTTTTC----TTTGTTTGATAG---ACGATCCACTTACTTT--ATTTAGTGATTAACAGAAGAAGTTACTCCGGGGATAACA-GCGTTATTTTCTTTGATA-GTTCTTATAGATGAGAAAGTTTGCGACCTCGATGTTGGCTCCGGATATCCTGAGGC-TGTAGGCGGTCTCAA-TGGTTGG-TATGTT-CGCCCA-TTAAAATCCTGACGTGATCTGAGTTCAGA-CCGG Amusium_pleuronectes CGCCTG-TTTATCAAAAACATGG-CTCCTTGAATATCATGAGGGGTCG-TGCCTTCCC-GGTGAGCTTGCGAGCTTAAACGGACGCGGTAAAGCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTTTCCAACTGTCTCTAATT---TTTTTTGGTGAACTTGAATTGGATGTGCAAATGCTTCCATGGGTAAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTTTAGCTATTGAGGCCTTTT--AACTA------------TGAAGTTAAGT-GTT--AAAGG----TTA-TACTTT---------------------------------GTTAGGTGAATAGTG----ACAGTTTTGGCTGGGGCAGCAAAAGAGCAAAGTTAGACTCTTTTAGTTTT--ATGTGACTGGTGTGTTACGACCCACAAATTTT--AGGGTGTGATTATCAGAAGAAGTTACTCCGGGGATAACA-GCGTAATCTGTCCTGACA-GTTCTTATAGATGGGCGGGTTTGCGACCTCGATGTTGGCTCTGGATATCCTAAGGCTTGTAGGCGGTCTTTA-GGGTTGG-TTCGTT-CGCCCA--TGAAAATCCAACGTGATCTGAGTTCAGA-CCGG Azumapecten_farreri CGCCTGGTTTATCAAAAACATGG-CTTTCTGAAGAGCATGGGGGGTCG-TGCCTTCCCCAGTGGGCATACGAGCCTAAACGGACGCGGTTTATCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTCCTCGACTGTCTCGAGGT---TGTTTTGGTGAACTTGAATTGAATGTGCAAATGCTTTCATGGGAAAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTCCTATTACAGCGTTAATCCGCTTTGATGTTTGTAGATCAGGCGTTTTAGAACTTTAATTTTCCAATACGGCTAGAGTTAGGGGTATTGGATGTTTATAGTTTTTAAGTAGGGGAGTGTGGTTTTGATGAGTTTTGGCTGGGGCAGCAAAGAGGCAAAACTAGACCTCTTTAGACA----CACAACGGGTGCGTTACGACCCACAAAA-ATGAATTGTGTGATTAGCAGAATGAGTTACTCCGGGGATAACAGCCGTAATCTTCCTTGATAAGTTCTTATAGATGGGCGGGTTTGCGACCTCGATGTTGGCTCTGGGTATCCTGAGGCTTGCAGGCGGTCTCAAAGGGTTGG-TTCGTT-CGCCCAATTAAAACCTTGACGTGATCTGAGTTCAAAACCGG Flexopecten_flexuosus CGCCTG-TTTATCAAAAACATGG-CCTTTTGAGT-TCATAAAAGGTCG-GTCCTTCCC-GGTGA-TTT----GTTTAAACGGATGCGGTAAAGCGTGCTAAGGTAGCTAAGTTA-TGGTCTTTTAATTTTAGGCCCT----------GTGAAAGGATTGACGAGCTTGAGTCTGTCTCTACCT---AAATTTTATGAAATTGAATTTTAAGTGCAAATGCTTAAGTGGACATGAAAGACGAGAAGACCCCGTGAAGTT-------------GTAGCGGGAGC----------------------------------------------------------------------------------------AGGAAAGCTCCTT-----------CTTTT-GCTGGGGCAGCAAAAGAGCTAGGTTAGACTCTTTTTTATT---TTAGGTTGGTGA----AAGACCCA------TT--AA---GTGAGTATCAGAAGAAGTTACTCCGGGGATAACA-GCGTAATTTATCTTGATA-GTTCTTATAGATGGGTAAGTTTGCGACCTCGATGTTGGCTCTGGATATCCTGAGGC-TGTAGTCGGTCTCGA-CGGTTGG-TATGTT-CGCCCA--TTAAAATCCTACGTGATCTGAGTTCAGA-CCGG Flexopecten_glaber_1 CGCCTG-TTTATCAAAAACATGG-CCTTTTGCGT-TCATAAAAGGTCG-GTCCTTCCC-GGTGA-TTT----ATTTAAACGGATGCGGTAAAGCGTGCTAAGGTAGCTAAGTTA-TGGTCTTTTAATTTTAGGCCCT----------GTGAAAGGATTGACGAGCTTGAGTCTGTCTCTATCT---AAATTTTATGAAATTGAATTTTAAGTGCAAATGCTTAAGTGGACATGAAAGACGAGAAGACCCCGTGAAGTT-------------GTAGCGGGAGC----------------------------------------------------------------------------------------AGGAAAGCTCCTT-----------CTTTT-GCTGGGGCAGCAAAAGAGCTAGGTTAGACTCTTTTTTCTT---TTAGGTTGGTGA----AAGACCCA------TT--AA---GTGAGTATCAGAAGAAGTTACTCCGGGGATAACA-GCGTAATTTATCTTGATA-GTTCTTATAGATGGGTAAGTTTGCGACCTCGATGTTGGCTCTGGATATCCTGAGGC-TGTAGTCGGTCTCGA-CGGTTGG-TATGTT-CGCCCA--TTAAAATCCTACGTGATCTGAGTTCAGA-CCGG Manupecten_pesfelis_1 CGCCTG-TTTATCAAAAACATGG-CTTTCTGAGAAACATGGGGGGTCG-TGCCTTCCC-AGTGGGTATACGAGCCTAAACGGACGCGGTAAATCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTCTTCGTCTGTCTCAAGGT---TATTTTAGTGAACTTGAATTAAATGTGCAAATGCATTTATAGGTGAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTTTTACTGTAGCGTAACCCCTTAATATATA----ATATTTGTCGCTTAATCATT--GACTACCTAATACTACTTAGTGCTGGTGTAGTGGG---GGTTGAGGGATAAGCAGAGGAGTGCAGTT--AATAGGTTTTGGCTGGGGCAGCAAAAAGGCAAATCTAGACCTTTTTAGTTT----ATTAACGGGTGCGTTATGATCCACATAAGAGGGTAAATGTGCATAGCAGAAGAAGTTACTCCGGGGATAACA-GCGTTATCCACCCTGACA-GTTCTTATAGATGGGTGGGTTTGCGACCTCGATGTTGGCTCTGGGTATCCTGAGGC-TGTAGGCGGTCTCGA-AGGTTGG-TTTGTT-CGCCCA-TTAAAACCC-GACGTGATCTGAGTTCAGA-CCGG Manupecten_pesfelis_2 CGCCTG-TTTATCAAAAACATGG-CTTTCTGAGAAACATGGGGGGTCG-TGCCTTCCC-AGTGGGTATACGAGCCTAAACGGACGCGGTAAATCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTCTTCGTCTGTCTCAAGGT---TATTTTAGTGAACTTGAATTAAATGTGCAAATGCATTTATAGGTGAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTTTTACTGTAGCGTAACCCCTTAATATATA----ATATTTGTCGCTTAATCATT--GACTACCTAATACTATTTAGTGCTGGTGTAGCGGG---GGTTGAGGGATAAGCAGAGGAGTGCAGTT--AATAGGTTTTGGCTGGGGCAGCAAAAAGGCAAATCTAGACCTTTTTAGTTT----ATTAACGGGTGCGTTATGATCCACATAAGAGGGTAAATGTGCATAGCAGAAGAAGTTACTCCGGGGATAACA-GCGTTATCCACCCTGACA-GTTCTTATAGATGGGTGGGTTTGCGACCTCGATGTTGGCTCTGGGTATCCTGAGGC-TGTAGGCGGTCTCGA-AGGTTGG-TTTGTT-CGCCCA-TTAAAACCC-GACGTGATCTGAGTTCAGA-CCGG Mimachlamys_nobilis CGCCTG-TTTATCAAAAACATGGTCTTTTTGTGTACCATAAAAAGTCG-TGCCTTCCC-AGTGGGTTTT--AACCTAAACGGATGCGGTAAATCGTGCTAAGGTAGCTAAATTA-TGGCCCATTAATTGTGGGTCTT----------GCGAACGGCTTGACGAGTTCCCTACTGTCTCGAAGT---TGTTTTGGTGAACTTGAATTGGATGTGCAAATGCTTCCATGGGTGAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTTTTTATCTAGTATGAATTTTCAGTTT---------------TTTTTGAGTTTGCAGATGTAAGTTGAGATCTTGA-----------------------------GAGTTGAAAAATATGGTT--CTATTGTTTTGGCTGGGGCAGCAAGAAGGCAAAACTAGACCTTCTTTATTA----AAAAACGGGTGCGTTACGACCCATAGTT-TTGAAAGGAATGATTATCAGAAGAAGTTACTCCGGGGATATCA-GCGTTATCCGTCCTGATA-GTCCTTATAGATGGGCGGGTTTGCGACCTCGATGTTGGCTCTGGTTATCCTGAGGCTTGCAGGAGGTCTCGA-GGGTTGG-TTTGTT-CGCCCA--TAAAATCC-GACGTGATCTGAGTTCAGA-CCGG Mimachlamys_varia_1 CGCCTG-TTTATCAAAAACATGG-CTTTCTGAGAAACATGGGGGGTCG-TGCCTTCCC-AGTGGGTATACGAGCCTAAACGGACGCGGTAAATCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTCCCCTACTGTCTCGAGGT---TGTTTTGGTGAAATTGAATTGAACGTGCAAATGCTTTCATGGGGAAGAAAGACGAGAAGACCCCGTGAAGTTAGGAATGCCTGCCATAACGTAAAATCCCTATAAC-----------AGATGTTATTAGCA--ATATAAATATGCAAGGCTTGGGGTTCTTGTGTAGAA-----------TTGTCGTTGGGAAGAATGGTC--AGTGCGTTTTGGCTGGGGCAGCAAAGAGGCAAAACTAGCCCTCTTTATTCG----AAAAACGGATGCGTTACGACCCACAGGA-ATGTATGTTGTGACTAGCAGAATGAGTTACTCCGGGGATAACA-GCGTAGTCCGCCTCGATA-GTTCGTATAGACGGGCGGGTTCGCGACCTCGATGTTGGCTCTGGGTATCCTGAGGCTTGCAGGGGGTCTCAA-GGGTTGG-TTCGTT-CGCCCA-TTAAAACCC-GACGTGATCTGAGTTCAGA-CCGG Mimachlamys_varia_2 CGCCTG-TTTATCAAAAACATGG-CTTTCTGAGAAACATGGGGGGTCG-TGCCTTCCC-AGTGGGTATACGAGCCTAAACGGACGCGGTAAATCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTCCCCTACTGTCTCGAGGT---TGTTTTGGTGAAATTGAATTGAACGTGCAAATGCTTTCATGGGGAAGAAAGACGAGAAGACCCCGTGAAGTTAGGAATGCCTGCCATAACGTGAAATCCCTATAAC-----------AGATGTTATTAGCA--ATATAAATATGCAAGGCTTGGGGTTCTTGTGTAGAA-----------TTGTCGTTGGGAAGAATGGTC--AGTGCGTTTTGGCTGGGGCAGCAAAGAGGCAAAACTAGCCCTCTTTATTCG----AAAAACGGATGCGTTACGACCCACAGGA-ATGTATGTTGTGACTAGCAGAATGAGTTACTCCGGGGATAACA-GCGTAGTCCGCCTCGATA-GTTCGTATAGACGGGCGGGTTCGCGACCTCGATGTTGGCTCTGGGTATCCTGAGGCTTGCAGGGGGTCTCAA-GGGTTGG-TTCGTT-CGCCCA-TTAAAACCC-GACGTGATCTGAGTTCAGA-CCGG Mizuhopecten_yessoensis CGCCTG-TTTATCAAAAACATGG-CTTTCTGACTAACATGGGGGGTCG-TGCCTTCCC-GGTGGGTATACGAGCCTAAACGGACGCGGTAAATCGTGCTAAGGTAGCTAAATTA-TGGCCCATTAATTGTGGGTCCT----------GTGAATGGTTTGACGAGTCCTCTACTGTCTCAAGGT---TGTTTTGGTGAACTTGAATTGAATGTGCAAATGCTTTCATACGAAAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTCCTATTACAGCGTAAACCCACATTGAC-----TGTGTCAG-CGTTAAAGAGC--AGATAGGGCTTTGGATCTTTTTTTGAAGGTCCCGGC--TTTATGGCTTTTGAGCAGCGGAATGTAGTTTTGACGAGTTTTGGCTGGGGCAGCAAAGAGGCAAAACTAGACCTTTTTAATCA----CTAAACGGATACGTTACGACCCACAAAACATGAAAATCGTGATTAACAGAAGGAGTTACTCCGGGGATAACATGCGTAATCTTCCTTGATA-GTTCTTATAGATGGGCGGGTTTGCGACCTCGATGTTGGCTCTGGGTATCCTGAGGCATGCAGGCGGTCTCAA-GGGTTGG-TTCGTT-CGCCCA-TTAAAACCC-GACGTGATCTGAGTTCAGA-CCGG Pecten_jacobaeus_1 CGCCTG-TTTATCAAAAACATGG-CTCCCTGAGCAATATGGGGGGTCG-TGCCTTCCC-GGTGAGCTTGCGGGCTTAAACGGACGCGGTAAAGCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTTTCCAACTGTCTCTAGTT---TTTTTTGGTGAACTTGAATTGGATGTGCAAATGCTTCCATGGGTAAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTTAAGTTATTGGGAAGTTCCAAGGCTA----------TTTGTAGCCGAATCGTT--GAGGAGC-ACTAGAACTTAGTGT------------------------TTCAGAAGGGGTGAATAATA----GCAGTTTTGGCTGGGGCAGCAAAGGAGCAAAGCTAGACTCCTTTAGGGT---GTAAAACAGATGTGTTACGACCCACAAACATT--AAGGTGTGATTATCAGAAGAAGTTACTCCGGGGATAACA-GCGTAATCTGTCTTGATA-GTTCTTATAGATGGGCGGGTTTGCGACCTCGATGTTGGCTCTGGATATCCTAAGGCTTGTAGGCGGTCTTGA-GGGTTGG-TTCGTT-CGCCCA--TAAAAATCTGACGTGATCTGAGTTCAGA-CCGG Pecten_jacobaeus_2 CGCCTG-TTTATCAAAAACATGG-CTCCCTGAGCAATATGGGGGGTCG-TGCCTTCCC-GGTGAGCTTGCGGGCTTAAACGGACGCGGTAAAGCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTTTCCAACTGTCTCTAGTT---TTTTTTGGTGAACTTGAATTGGATGTGCAAATGCTTCCATGGGTAAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTTAAGTTATTGGGAAGTTCCAAGGCTA----------TTTGTAGCCGAATCGTT--GAGGAGC-ACTAGAACTTAGTGT------------------------TTCAGAAGGGGTGAATAATA----GCAGTTTTGGCTGGGGCAGCAAAGGAGCAAAGCTAGACTCCTTTAGGGT---GTAAAACAGATGTGTTACGACCCACAAACATT--AAGGTGTGATTATCAGAAGAAGTTACTCCGGGGATAACA-GCGTAATCTGTCTTGATA-GTTCTTATAGATGGGCGGGTTTGCGACCTCGATGTTGGCTCTGGATATCCTAAGGCTTGTAGGCGGTCTTGA-GGGTTGG-TTCGTT-CGCCCA--TAAAAATCTGACGTGATCTGAGTTCAGA-CCGG Pecten_keppelianus_1 CGCCTG-TTTATCAAAAACATGG-CTCCCTGAGCAATATGGGGGGTCG-TGCCTTCCC-GGTGAGCTTGCGAGCTTAAACGGACGCGGTAAAGCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTTTCCAACTGTCTCTAGTT---TTTTTTGGTGAACTTGAATTGGATGTGCAAATGCTTCCATGGGTAAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTTAAGTTATTGGGAAGTTCCAAAGCTAA---------TTTGTAGCTGAATCGTT--GAGGAGC-ACTA-TATTTAGTGT------------------------TTCAGAAGGGATGAATAATA----GCAGTTTTGGCTGGGGCAGCAAAGGAGCAAAGCTAGACTCCTTTAGGGT---GTAGAACAGATGTGTTACGACCCACAAACATT--AAGGTGTGATTATCAGAAGAAGTTACTCCGGGGATAACA-GCGTAATCTGTCTTGATA-GTTCTTATAGATGGGCGGGTTTGCGACCTCGATGTTGGCTCTGGATATCCTAAGGCTTGTAGGCGGTCTTGA-GGGTTGG-TTCGTT-CGCCCA--TAAAAATCTGACGTGATCTGAGTTCAGA-CCGG Pecten_keppelianus_2 CGCCTG-TTTATCAAAAACATGG-CTCCCTGAGCAATATGGGGGGTCG-TGCCTTCCC-GGTGAGCTTGCGAGCTTAAACGGACGCGGTAAAGCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTTTCCAACTGTCTCTAGTT---TTTTTTGGTGAACTTGAATTGGATGTGCAAATGCTTCCATGGGTAAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTTAAGTTATTGGGAAGTTCCAAAGCTAA---------TTTGTAGCTGAATCGTT--GAGGAGC-ACTA-TATTTAGTGT------------------------TTCAGAAGGGATGAATAATA----GCAGTTTTGGCTGGGGCAGCAAAGGAGCAAAGCTAGACTCCTTTAGGGT---GTAGAACAGATGTGTTACGACCCACAAACATT--AAGGTGTGATTATCAGAAGAAGTTACTCCGGGGATAACA-GCGTAATCTGTCTTGATA-GTTCTTATAGATGGGCGGGTTTGCGACCTCGATGTTGGCTCTGGATATCCTAAGGCTTGTAGGCGGTCTTGA-GGGTTGG-TTCGTT-CGCCCA--TAAAAATCTGACGTGATCTGAGTTCAGA-CCGG Pecten_maximus_1 CGCCTG-TTTATCAAAAACATGG-CTCCCTGAGCAATATGGGGGGTCG-TGCCTTCCC-GGTGAGCTTGCGGGCTTAAACGGACGCGGTAAAGCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTTTCCAACTGTCTCTAGTT---TTTTTTGGTGAACTTGAATTGGATGTGCAAATGCTTCCATGGGTAAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTTAAGTTATTGGGAAGTTCCAAGGCTA----------TTTGTAGCCGAATCGTT--GAGGAGC-ACTAGAACTTAGTGT------------------------TTCAGAAGGGGTGAATAATA----GCAGTTTTGGCTGGGGCAGCAAAGGAGCAAAGCTAGACTCCTTTAGGGT---GTAAAACAGATGTGTTACGACCCACAAACATT--AAGGTGTGATTATCAGAAGAAGTTACTCCGGGGATAACA-GCGTAATCTGTCTTGATA-GTTCTTATAGATGGGCGGGTTTGCGACCTCGATGTTGGCTCTGGATATCCTAAGGCTTGTAGGCGGTCTTGA-GGGTTGG-TTCGTT-CGCCCA--TAAAAATCTGACGTGATCTGAGTTCAGA-CCGG Pecten_maximus_2 CGCCTG-TTTATCAAAAACATGG-CTCCCTGAGCAATATGGGGGGTCG-TGCCTTCCC-GGTGAGCTTGCGGGCTTAAACGGACGCGGTAAAGCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTTTCCAACTGTCTCTAGTT---TTTTTTGGTGAACTTGAATTGGATGTGCAAATGCTTCCATGGGTAAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTTAAGTTATTGGGAAGTTCCAAGGCTA----------TTTGTAGCCGAATCGTT--GAGGAGC-ACTAGAACTTAGTGT------------------------TTCAGAAGGGGTGAATAATA----GCAGTTTTGGCTGGGGCAGCAAAGGAGCAAAGCTAGACTCCTTTAGGGT---GTAAAACAGATGTGTTACGACCCACAAACATT--AAGGTGTGATTATCAGAAGAAGTTACTCCGGGGATAACA-GCGTAATCTGTCTTGATA-GTTCTTATAGATGGGCGGGTTTGCGACCTCGATGTTGGCTCTGGATATCCTAAGGCTTGTAGGCGGTCTTGA-GGGTTGG-TTCGTT-CGCCCA--TAAAAATCTGACGTGATCTGAGTTCAGA-CCGG Pecten_novaezelandiae CGCCTG-TTTATCAAAAACATGG-CTCCCTGAGCAATATGGGGGGTCG-TGCCTTCCC-GGTGAGCTTGTGGGCTTAAACGGACGCGGTAAAGCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTTTCCAACTGTCTCTAGTT---TTTTTTGGTGAACTTGAATTGGATGTGCAAATGCTTCCATGGGTAAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTTAAGTTATTGGGAAGTTCCAAGGCTAA---------TTTGTGGCCGAATCGTT--GAGGAGC-ACTATAATCTAGTGT------------------------TTTAGAAGGGGTGAATAATA----GCAGTTTTGGCTGGGGCAGCAAAGGAGCAAAGCTAGACTCCTTTAGGGT---ATAAAACAGATGTGTTACGACCCACAAACATT--AAGGTGTGATTATCAGAAGAAGTTACTCCGGGGATAACA-GCGTAATCTGTCTTGATA-GTTCTTATAGATGGGCGGGTTTGCGACCTCGATGTTGGCTCTGGATATCCTAAGGCTTGCAGGCGGTCTTGA-GGGTTGG-TTCGTTTCGCCCA--TAAAAATCTGACGTGATCTGAGTTCAGA-CCGG Semipallium_fulvicostata CGCCTG-TTTATCAAAAACATGG-CTTTCTGAAAAACATAGAGGGTCG-TGCCTTCCC-AGTGGGTATACGAGCCTAAACGGACGCGGTAAATCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTCTTCATCTGTCTCAAAGT---TATTTTGGTGAACTTGAATTAAATGTGCAAATGCATTTATGGGGAAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTTTTAATATAATGTAAAGTCTTGATGATCG----GGGATTATTGTTATTTTACTA-GAAGGTTTACTATTACTCAG-GAGAAGGTAGTAGG-CAAGCTGGTGGGAGAGTTGAGAAATATAGTT--AATAGGTTTTGGCTGGGGCAGCAAAGAGGCAAAGCTAGACCTCTTTAGTCT----ATTGACGGGTGCGTTACGATCCACATGGTTGGTCAGATGTGCTTAGCAGAAGAAGTTACTCCGGGGATAACA-GCGTTATCCATCCTGATA-GCTCTTATAGATGGGTGGGTTTGCGACCTCGATGTTGGCTCTGGGTATCCTGAGGC-TGTAGGTGGTCTCAA-GGGTTGGGTTTGTT-CGCCCA-TTAAAACCC-GACGTGATCTGAGTTCAGA-CCGG Spondylus_gaederopous CGCCTG-TTTATCAAAAACATGGTCTCCTCGGGAATCACGTGGAGTCGGTGATCTTCCCAGTGGGTGTACGCATTTAAACGGGGGCAAAGGCATGTCCAAAGGTAGCTAAATTACTGGACCAGTAATTCTGGTTCATACATTAAAAAGTGAAGGGGCTGACGAGTCTCTAACTGTCTCTATTTACGTACTCGTTGGAATTTTAGTTGGAAGTGCAAACGCTTTCTTGGGTGAGAAAGACGAGAAGACCCTATGAAGTT------------TATCTAGTGAACCCTGGG-----------------------------------------------------------------------GAGGGCTTCGTGCTCAGGCTATCTTGGG--GGTGGCTTTT-GCTGGGGCAGCAGGAGAGC-AGGTTAGACTCTACCGCTGACATAAAAAGCTGGTATGCT-CGATCCACTAAAGGTAAGGGGGCCGATCAGGAGAAAGAGTTACTCTAGGGATAACA-GCGTAATTTTGCCCATTGAGATCTTATCATTGGGCAAGGTTGCGACCTCGATGTTGGCTCTGGGTATCCATGAACTTGCAGGAGGTTCAAA-TGGTTGG-TTTGTT-CGCCCA-TTAAAACCTCGACGTGATCTGAGTTCAGA-CCGG Talochlamys_multistriata CGCCTG-TTTATCAAAAACATGG-CCTCTTGAGAAACATGGGGGGTCG-TGCCTTCCC-GGTGGGTACAAGAGCCTAAACGGACGCGGTAAATCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTCCTCTACTGTCTCAAGGT---TGTTTTGGTGAACTTGAATGGAACGTGCAAATGCTTTCATGAGAGAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTCCCGCTATAACGAGAAGTCCCTCTTA--------------ATGT-A----------ATTAAT-TGTAAG-----------------------------------TCGTGGGGAAATATGGTT--GGTGAGTTTTAGCTGGGGCAGCTAAGGGGCAAGCCTAGACCCCTTTTATCT----TTAAACGGGTGCGTTACGATCCACAGAA-ATGAATGTTGTGATTAGCAGAAGGAGTTACTCCGGGGATAACA-GCGTAGTCCGCCTTGATA-GTTCGTATAGATGGGCGGGTTCGCGACCTCGATGTTGGCTCTGGATATCCTGAAGCTTGCAGGCGGTTTCAA-GGGTTGG-TTCGTT-CGCCCA-TTAAAATCC-AACGTGATCTGAGTTCAGA-CCGG Talochlamys_pusio CGCCTG-TTTATCAAAAACATGG-CCGCTTGAGAAACATGGGGGGTCT-GGCCTTCCC-GGTGGGTACAAGAGCCTAAACGGACGCGGTAAATCGTGCTAAGGTAGCTAAATTA-TGGCCTATTAATTGTAGGTCCT----------GTGAATGGTTTGACGAGTCCTCTACTGTCTCAAGGT---TGTTTTGGTGAACTTGAATGGAACGTGCAAATGCTTTCATGAGAGAGAAAGACGAGAAGACCCCGTGAAGTTAGAAATTCCCGCTATAACGAGAAGTCCCTCTTA--------------ATGTGA----------ATTAAT-TGTAAG-----------------------------------TCGTGGGGAAATATGGTT--GGTGAGTTTTAGCTGGGGCAGCTAAGGGGCAAGCCTAGACCCCTTTTATCT----TTAAACGGGTGCGTCACGATCCACAGAA-ATGAATGTTGTGATTAGCAGAAGGAGTTACTCCGGGGATAACA-GCGTAGTCCGCCTTGATA-GTTCGTATAGATGGGCGGGTTCGCGACCTCGATGTTGGCTCTGGATATCCTGAAGCTTGCAGGCGGTTTCAA-GGGTTGG-TTCGTT-CGCCCA-TTAAAATCC-AACGTGATCTGAGTTCAGA-CCGG ; END; BEGIN TREES; TITLE 16S_def_MP; LINK TAXA = Taxa2; TRANSLATE 1 Flexopecten_glaber_1, 2 Flexopecten_flexuosus, 3 Pecten_jacobaeus_1, 4 Pecten_jacobaeus_2, 5 Pecten_maximus_1, 6 Pecten_maximus_2, 7 Pecten_keppelianus_1, 8 Pecten_keppelianus_2, 9 Pecten_novaezelandiae, 10 Amusium_pleuronectes, 11 Manupecten_pesfelis_1, 12 Manupecten_pesfelis_2, 13 Semipallium_fulvicostata, 14 Azumapecten_farreri, 15 Mizuhopecten_yessoensis, 16 Talochlamys_multistriata, 17 Talochlamys_pusio, 18 Mimachlamys_varia_1, 19 Mimachlamys_varia_2, 20 Aequipecten_opercularis_1, 21 Mimachlamys_nobilis, 22 Spondylus_gaederopous; TREE PAUP_1 = [&R] (22:0.0,((20:115.0,(1:83.0,2:81.0):58.0):122.0,((10:29.0,((3:0.0,4:0.0,5:0.0,6:0.0,9:10.0):5.0,(7:0.0,8:0.0):4.0):41.0):35.0,(21:59.0,((((13:44.0,(11:0.0,12:2.0):42.0):47.0,(14:45.0,15:46.0):22.0):53.0,(18:0.0,19:1.0):32.0):38.0,(16:1.0,17:4.0):34.0):41.0):39.0):206.0):0.0); TREE PAUP_2 = [&R] (22:0.0,((20:115.0,(1:83.0,2:81.0):58.0):122.0,((10:29.0,((9:8.0,(3:0.0,4:0.0,5:0.0,6:0.0):2.0):5.0,(7:0.0,8:0.0):2.0):43.0):35.0,(21:59.0,((((13:44.0,(11:0.0,12:2.0):42.0):47.0,(14:45.0,15:46.0):22.0):53.0,(18:0.0,19:1.0):32.0):38.0,(16:1.0,17:4.0):34.0):41.0):39.0):206.0):0.0); END; BEGIN TREES; TITLE 'ITS-2 def MP'; LINK TAXA = Taxa1; TRANSLATE 1 Pecten_jacobaeus_1, 2 Pecten_jacobaeus_2, 3 Pecten_maximus_1, 4 Pecten_maximus_2, 5 Pecten_keppelianus_1, 6 Pecten_keppelianus_2a, 7 Pecten_keppelianus_2b, 8 Pecten_novaezelandiae, 9 Amusium_pleuronectes, 10 Aequipecten_opercularis_2, 11 Aequipecten_opercularis_1, 12 Flexopecten_glaber_1, 13 Flexopecten_glaber_2, 14 Flexopecten_flexuosus, 15 Argopecten_irradians_, 16 Manupecten_pesfelis_1, 17 Manupecten_pesfelis_2, 18 Semipallium_fulvicostata, 19 Talochlamys_multistriata, 20 Talochlamys_pusio, 21 Mimachlamys_varia_1, 22 Mimachlamys_varia_2, 23 Azumapecten_farreri, 24 Mizuhopecten_yessoensis, 25 Mimachlamys_nobilis, 26 Spondylus_gaederopous; TREE PAUP_4 = [&R] ((((((1:0.0,2:1.0,3:0.0,4:1.0):51.0,((5:0.0,6:0.0):1.0,7:0.0,8:3.0):53.0):50.0,9:93.0):75.0,(((10:1.0,11:0.0):24.0,(12:0.0,13:0.0,14:2.0):41.0):31.0,15:32.0):99.0):115.0,(((16:0.0,17:0.0):35.0,18:60.0):34.0,(((((19:4.0,20:3.0):95.0,(21:1.0,22:1.0):43.0):34.0,23:50.0):35.0,24:43.0):34.0,25:50.0):62.0):221.0):0.0,26:0.0); TREE PAUP_2 = [&R] ((((((1:0.0,2:1.0,3:0.0,4:1.0):52.0,(((5:0.0,6:0.0):1.0,7:0.0):2.0,8:1.0):52.0):50.0,9:93.0):75.0,(((10:1.0,11:0.0):24.0,(12:0.0,13:0.0,14:2.0):41.0):31.0,15:32.0):99.0):115.0,(((16:0.0,17:0.0):35.0,18:60.0):34.0,(((((19:4.0,20:3.0):95.0,(21:1.0,22:1.0):43.0):34.0,23:50.0):35.0,24:43.0):34.0,25:50.0):62.0):221.0):0.0,26:0.0); TREE PAUP_3 = [&R] (((((((1:0.0,2:1.0,3:0.0):10.0,4:9.0):41.0,((5:0.0,6:0.0):1.0,7:0.0,8:3.0):53.0):50.0,9:93.0):75.0,(((10:1.0,11:0.0):24.0,(12:0.0,13:0.0,14:2.0):41.0):31.0,15:32.0):99.0):115.0,(((16:0.0,17:0.0):35.0,18:60.0):34.0,(((((19:4.0,20:3.0):95.0,(21:1.0,22:1.0):43.0):34.0,23:50.0):35.0,24:43.0):34.0,25:50.0):62.0):221.0):0.0,26:0.0); TREE PAUP_1 = [&R] (((((((1:0.0,2:1.0,3:0.0):11.0,4:10.0):41.0,(((5:0.0,6:0.0):1.0,7:0.0):2.0,8:1.0):52.0):50.0,9:93.0):75.0,(((10:1.0,11:0.0):24.0,(12:0.0,13:0.0,14:2.0):41.0):31.0,15:32.0):99.0):115.0,(((16:0.0,17:0.0):35.0,18:60.0):34.0,(((((19:4.0,20:3.0):95.0,(21:1.0,22:1.0):43.0):34.0,23:50.0):35.0,24:43.0):34.0,25:50.0):62.0):221.0):0.0,26:0.0); END;