#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on April 26, 2024; 6:44 GMT

TreeBASE (cc) 1994-2008

Study reference:
Sanchez J. 2005. Systematics of the bubblegum corals (Cnidaria: Octocorallia: Paragorgiidae)
with description of new species from New Zealand and the Eastern Pacific.
Zootaxa, null.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1357]

BEGIN TAXA;
        TITLE  Taxa1;
        DIMENSIONS NTAX=17;
        TAXLABELS
            Paragorgia_alisonae
            Paragorgia_aotearoa
            Paragorgia_arborea
            Paragorgia_coralloides
            Paragorgia_johnsoni
            Paragorgia_kaupeka
            Paragorgia_maunga
            Paragorgia_regalis
            Paragorgia_splendens
            Paragorgia_stephencairnsi
            Paragorgia_tapachtli
            Paragorgia_wahine
            Paragorgia_whero
            Paragorgia_yutlinux
            Sibogagorgia_dennisgordoni
            Sibogagorgia_tautahi
            Sibogagorgia_weberi
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1432]

	TITLE Sclerites;
	LINK TAXA = Taxa1;
	DIMENSIONS NCHAR=8;
	FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3 4" MISSING=? GAP= -;
	CHARSTATELABELS
		1  Terminal_branch_width / '< 4mm' '> 5 mm',
		2  Conenchyme_colour / Colourless pink red 'Colourless and dark (purple) autozooid apertures',
		3  Surface_sclerites_form / 'Symmetrical (all rays equal)' 'Asymmetrical (some larger or differentiated rays present)',
		4  'Surface sclerites rays =warts' / Globular_and_fused 'smooth (unfused)' Grooved Lobulated '> 5 lobes',
		5  'Surface sclerites length div width - coded' / '<1.3' '1.5 < X < 1.65' '> 1.66',
		6  'Surface sclerites ornamentation - dominant forms' / '6-radiates' '7-radiates' '8-radiates',
		7  Medulla_spindles / 'Smooth (few or no ornamentation)' Ornate,
		8  Autozooid_tentacles_sclerites / Absent Ornate_blunt_sclerites,
		;

MATRIX
Paragorgia_alisonae            02041211
Paragorgia_aotearoa            02011211
Paragorgia_arborea             12020011
Paragorgia_coralloides         01102211
Paragorgia_johnsoni            02011211
Paragorgia_kaupeka             01122111
Paragorgia_maunga              02122211
Paragorgia_regalis             01122111
Paragorgia_splendens           01042211
Paragorgia_stephencairnsi      03031111
Paragorgia_tapachtli           01102211
Paragorgia_wahine              01042211
Paragorgia_whero               01042211
Paragorgia_yutlinux            03031111
Sibogagorgia_dennisgordoni     10022200
Sibogagorgia_tautahi           10032200
Sibogagorgia_weberi            10031200
;
END;

BEGIN TREES;
      TITLE Tb7316;
      LINK TAXA = Taxa1;
         TRANSLATE
            1    Sibogagorgia_dennisgordoni,
            2    Sibogagorgia_tautahi,
            3    Sibogagorgia_weberi,
            4    Paragorgia_wahine,
            5    Paragorgia_stephencairnsi,
            6    Paragorgia_yutlinux,
            7    Paragorgia_aotearoa,
            8    Paragorgia_maunga,
            9    Paragorgia_kaupeka,
            10   Paragorgia_alisonae,
            11   Paragorgia_regalis,
            12   Paragorgia_coralloides,
            13   Paragorgia_tapachtli,
            14   Paragorgia_whero,
            15   Paragorgia_splendens,
            16   Paragorgia_johnsoni,
            17   Paragorgia_arborea;
      TREE Fig._5B = [&R] ((17,(((((16,7),(6,5)),10),(15,14,4)),(((13,12),(11,9)),8))),((3,2),1));
      TREE Fig._5A = [&R] ((17,((((16,7,(6,5)),10),(15,14,4)),(((13,12),(11,9)),8))),((3,2),1));



END;