#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 19, 2024; 9:46 GMT TreeBASE (cc) 1994-2008 Study reference: Fan D., Yue J., Nie Z., Li Z., Comes H., & Sun H. 2013. Phylogeography of Sophora davidii (Leguminosae) across the "Tanaka-Kaiyong Line", an important phytogeographic boundary in Southwest China. Molecular Ecology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S13583] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=22; TAXLABELS Sophora_davidii_C1 Sophora_davidii_C10 Sophora_davidii_C11 Sophora_davidii_C12 Sophora_davidii_C13 Sophora_davidii_C14 Sophora_davidii_C15 Sophora_davidii_C16 Sophora_davidii_C17 Sophora_davidii_C18 Sophora_davidii_C19 Sophora_davidii_C2 Sophora_davidii_C20 Sophora_davidii_C21 Sophora_davidii_C22 Sophora_davidii_C3 Sophora_davidii_C4 Sophora_davidii_C5 Sophora_davidii_C6 Sophora_davidii_C7 Sophora_davidii_C8 Sophora_davidii_C9 ; END; BEGIN TAXA; TITLE Taxa2; DIMENSIONS NTAX=29; TAXLABELS Sophora_davidii_H1 Sophora_davidii_H10 Sophora_davidii_H11 Sophora_davidii_H12 Sophora_davidii_H13 Sophora_davidii_H14 Sophora_davidii_H15 Sophora_davidii_H16 Sophora_davidii_H17 Sophora_davidii_H18 Sophora_davidii_H19 Sophora_davidii_H2 Sophora_davidii_H20 Sophora_davidii_H21 Sophora_davidii_H22 Sophora_davidii_H23 Sophora_davidii_H3 Sophora_davidii_H4 Sophora_davidii_H5 Sophora_davidii_H6 Sophora_davidii_H7 Sophora_davidii_H8 Sophora_davidii_H9 Sophora_flavescens Sophora_japonica Sophora_moorcroftiana_ Sophora_tomentosa Sophora_tonkinensis_ Trifolium_repens ; END; BEGIN TAXA; TITLE Taxa3; DIMENSIONS NTAX=32; TAXLABELS Phaseolus_coccineus_ Piptanthus_nepalensis_ Salweenia_wardii Sophora_davidii_C1 Sophora_davidii_C10 Sophora_davidii_C11 Sophora_davidii_C12 Sophora_davidii_C13 Sophora_davidii_C14 Sophora_davidii_C15 Sophora_davidii_C16 Sophora_davidii_C17 Sophora_davidii_C18 Sophora_davidii_C19 Sophora_davidii_C2 Sophora_davidii_C20 Sophora_davidii_C21 Sophora_davidii_C22 Sophora_davidii_C3 Sophora_davidii_C4 Sophora_davidii_C5 Sophora_davidii_C6 Sophora_davidii_C7 Sophora_davidii_C8 Sophora_davidii_C9 Sophora_flavescens Sophora_moorcroftiana_ Sophora_prazeri_ Sophora_tomentosa Sophora_tonkinensis_ Thermopsis_alpina Trifolium_repens_ ; END; BEGIN TAXA; TITLE Taxa4; DIMENSIONS NTAX=19; TAXLABELS Sophora_davidii_C1 Sophora_davidii_C12 Sophora_davidii_C14 Sophora_davidii_C15 Sophora_davidii_C16 Sophora_davidii_C17 Sophora_davidii_C18 Sophora_davidii_C19 Sophora_davidii_C2 Sophora_davidii_C20 Sophora_davidii_C21 Sophora_davidii_C22 Sophora_davidii_C3 Sophora_davidii_C4 Sophora_davidii_C5 Sophora_davidii_C6 Sophora_davidii_C7 Sophora_davidii_C8 Sophora_davidii_C9 ; END; BEGIN TAXA; TITLE Taxa5; DIMENSIONS NTAX=44; TAXLABELS Phaseolus_coccineus Piptanthus_nepalensis Sophora_davidii_S1 Sophora_davidii_S10 Sophora_davidii_S11 Sophora_davidii_S12 Sophora_davidii_S13 Sophora_davidii_S14 Sophora_davidii_S15 Sophora_davidii_S16 Sophora_davidii_S17 Sophora_davidii_S18 Sophora_davidii_S19 Sophora_davidii_S2 Sophora_davidii_S20 Sophora_davidii_S21 Sophora_davidii_S22 Sophora_davidii_S23 Sophora_davidii_S24 Sophora_davidii_S25 Sophora_davidii_S26 Sophora_davidii_S27 Sophora_davidii_S28 Sophora_davidii_S29 Sophora_davidii_S3 Sophora_davidii_S30 Sophora_davidii_S31 Sophora_davidii_S32 Sophora_davidii_S33 Sophora_davidii_S34 Sophora_davidii_S35 Sophora_davidii_S36 Sophora_davidii_S4 Sophora_davidii_S5 Sophora_davidii_S6 Sophora_davidii_S7 Sophora_davidii_S8 Sophora_davidii_S9 Sophora_flavescens Sophora_moorcroftiana_ Sophora_tomentosa Sophora_tonkinensis Thermopsis_alpina_ Trifolium_repens_ ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M16433] TITLE 'cpDNA haplotype matrix for beast analysis (with repeatitive regions)'; LINK TAXA = Taxa1; DIMENSIONS NCHAR=831; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Sophora_davidii_C1 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATT---------ATATTATAAT------------------AGAATTCTTATTTATTTTATTTTATTAAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTCTAAAAATTTATATAT--AATAATAAATA------ATTATAGACAATTAATTCTATATTCA-----------ATATTCTATTGTATATTAGATATTCGAAAATATTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTATCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAAACATTTTTTT--ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAGCAATAGAGTCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C10 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATTT--------ATATTATAAT------------------AGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTATAAAAATTTATATAT--AATAATAAATA------ATTATAGACAATTAATTCTATATTAA-----------ATATTCTATTGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAAACATTTTTTT--ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTATGAAGTATAAAGTAAAGGAGCAATAGAATCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C11 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATTT--------ATATTATAAT------------------AGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTATAAAAATTTATATAT--AATAATAAATA------ATTATAGACAATTAATTCTATATTAA-----------ATATTCTATTGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAAACATTTTTTTG-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTATGAAGTATAAAGTAAAGGAGCAATAGAATCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C12 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATTT--------ATATTATAAT------------------AGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTATAAAAATTTATATAT--AATAATAAATA------ATTATAGACAATTAATTCTATATTAA-----------ATATTCTATTGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAAACATTTTTTTTTATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAGCAATAGAATCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C13 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATTT--------ATATTATAAT------------------AGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTATAAAAATTTATATATATAATAATAAATA------ATTATAGACAATTAATTCTATATTAA-----------ATATTCTATTGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAAACATTTTTTTT-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAGCAATAGAATCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C14 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATTT--------ATATTATAATTATAAATTATAGTATAATAGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTATAAAAATTTATATAT--AATAATAAATA------ATTATAGACAATTAATTCTATATTAA-----------ATATTCTATTGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAATAAATAAAATGGAAACATTTTTTTT-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAGCAATAGAATCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C15 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATTT--------ATATTATAATTATAAATTATAGTATAATAGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTATAAAAATTTATATAT--AATAATAAATA------ATTATAGACAATTAATTCTATATTAA-----------ATATTCTATTGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAATAAATAAAATGGAAACATTTTTTTT-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAGCAATAGAGTCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C16 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATTT--------ATATTATAAT------------------AGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTATAAAAATTTATATAT--AATAATAAATA------ATTATAGACAATTAATTCTATATTAA-----------ATATTCTATTGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAAACATTTTTTTT-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAGCAATAGAGTCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C17 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATTT--------ATATTATAAT------------------AGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTATAAAAATTTATATAT--AATAATAAATA------ATTATAGACAATTAATTCTATATTAA-----------ATATTCTATTGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAAACATTTTTTTG-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAGCAATAGAGTCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C18 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAAATGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATTT--------ATATTATAAT------------------AGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTATAAAAATTTATATAT--AATAATAAATA------ATTATAGACAATTAATTCTATATTAATTCTATATTAAATATTCTATTGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCTTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAAACATTTTTTTT-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAGCAATAGAGTCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C19 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAAATGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATTT--------ATATTATAAT------------------AGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTATAAAAATTTATATAT--AATAATAAATA------ATTATAGACAATTAATTCTATATTAATTCTATATTAAATATTCTATTGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCTTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAAACATTTTTTTG-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTATGAAGTATAAAGTAAAGGAGCAATAGAATCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C2 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATT---------ATATTATAAT------------------AGAATTCTTATTTATTTTATTTTATTAAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTCTAAAAATTTATATAT--AATAATAAATA------ATTATAGACAATTAATTCTATATTCA-----------ATATTCTATTGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTATCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAAACATTTTTTT--ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAGCAATAGAGTCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C20 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATTG--------ATATTATAAT------------------AGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTATAAAAATTTATATAT--AATAATAAATA------ATTATAGACAATTAATTCTATATTAA-----------ATATTCTATTGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAAACATTTTTTTG-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTATGAAGTATAAAGTAAAGGAGCAATAGAATCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C21 TTGAAATCATAATAACCGATTTTGAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATTT--------ATATTATAAT------------------AGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTATAAAAATTTATATAT--AATAATAAATA------ATTATAGACAATTAATTCTATATTAA-----------ATATTCTATTGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAAACATTTTTTTG-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTATGAAGTATAAAGTAAAGGAGCAATAGAATCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C22 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATTT--------ATATTATAAT------------------AGAATTCTTATTTATTTTATT-----AAACT----------GTTTAAGTTTATTAGAATAAATTATAAAAATTTATATAT--AATAATAAATA------ATTATAGACAATTAATTCTATATTAA-----------ATATTCTATTGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAAACATTTTTTTG-ATCTTTTTGGAATCCATATGACTTCGAAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAGCAATAGAATCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C3 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATT---------ATATTATAAT------------------AGAATTCTTATTTATTTTATTTTATTAAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTCTAAAAATTTATATAT--AATAATAAATA------ATTATAGACAATTAATTCTATATTCA-----------ATATTCTATTGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTATCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAAAAATTTTTTT--ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAGCAATAGAGTCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C4 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATT-ATATTATTATATTATAAT------------------AGAATTCTTATTTATTTTATTTTATTAAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTCTAAAAATTTATATAT--AATAATAAATA------ATTATAGACAATTAATTCTATATTCA-----------ATATTCTATTGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTATCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAAACATTTTTTT--ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAGCAATAGAGTCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C5 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATT---------ATATTATAAT------------------AGAATTCTTATTTATTTTATTTTATTAAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTCTAAAAATTTATATAT--AATAATAAATATAAATAATTATAGACAATTAATTCTATATTCA-----------ATATTCTATTGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTATCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTGAAATAA-------AATGGAAACATTTTTTT--ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAGCAATAGAGTCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C6 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATT---------ATATTATAAT------------------AGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTCTAAAAATTTATATAT--AATAATAAATA------ATTATAGACAATTAATTCTATATTCA-----------ATATTCTATTGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTATCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTGAAATAA-------AATGGAAACATTTTTTT--ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAGCAATAGAATCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C7 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATTT--------ATATTATAAT------------------AGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTATAAAAATTTATATAT--AATAATAAATA------ATTATAGACAATTAATTCTATATTAA-----------ATATTCTATTGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAAACATTTTTTT--ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAGCAATAGAATCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C8 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATTT--------ATATTATAAT------------------AGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTATAAAAATTTATATAT--AATAATAAATA------ATTATAGACAATTAATTCTATATTAA-----------ATATTCTATTGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAAACATTTTTTTT-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAGCAATAGAATCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C9 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATTT--------ATATTATAAT------------------AGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTATAAAAATTTATATAT--AATAATAAATA------ATTATAGACAATTAATTCTATATTAA-----------ATATTCTATTGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAAACATTTTTTTG-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAGCAATAGAATCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M16085] TITLE gscp_dataset_for_monophyly_assessment; LINK TAXA = Taxa2; DIMENSIONS NCHAR=1223; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Sophora_davidii_H1 TGGGGAGGTTAT-GCCTGGGCAGGTATATTTCTCGCAGTCTCGGCATTCTCTTCTTTCAAGGTTTATGAATGTATGACCT-------CTTGTTTTTCTCATTATTTCTTCTACAAATACTGCAGTGGGAGTATCAAGTTGGTCCTAGTGTAGGTATTGAAGCTGGTGATCATATCTGGGCTTCTAGATACATCCTCGAGGTAATTCATTTTACCTACTTTTGGTTTATTTATAAACTGTATTGCTGTT---GGACCATTTGATACAGAAAGGTTAACCTTTTCA---------------AAAACATGTCATGGTAGCCTA--------ATCTATAGAAGTTT-CTGGTTCACTATAATACTTTATT---AAGGCTTTGACTTTTGTGCGGTTCTTGTGTTCATTTACAGGTGCATTTTAAGAAGTGGCTGTTTTATCCCAA--------TAAATAAATAA-ATTCAAGAAATGGCTCTTAGCACTAAGCTTGATACATAGTTAT-----------------------------------GTAC----------------TTATGTGTCATTCTCAACAGACAATTATTGACTGCA--------TAT------CTTTTTTG----------------ACAGATGCATAAGTCAAAGGTCGAA-GAC-AA-----TACACCCTAAATTAG----------------------------------GTACAATTCT---TAAGCATCTGTAAAGTT-TTAAGTTCATAATAGGTAATTCAGCATTCGG-AACTACAAGTTTGAGGGCAGCTGGATGGCTCATACCATTGCTTGTAAAAGACAATTGCTGATGTTTC---GCTTAATCAAAATTTTGT-CCTATCTCTCTTGTCCCCTGTCTAATTTTGTATCTTCTGATTAAATGTGTTGCATTTTTTT-CTGTTCTGACAGAGGATTACTGAACAAGCTGGTGTTGTTCTCTCACTTGATCCAAAACCAATAGAGGTA---CTAAAATGGTGTAGTTGACAGTATTTCTTCTCGTGTGTTAATTATACTATTTGTTTTGATTTTTACCCTGGCAGGGTGACTGGAATGGTGCAGGATGCCACACCAACTACAGGTTTCTGGACTTGCCATTGTCATGAATCATCACTGCATGTGTCTTTTTGGGTTCCTATATTACTAAGTTGATGAAATATTATTTGCTTTTTAGTACAAAGAGC Sophora_davidii_H10 TGGGGAGGTTAT-GCCTGGGCAGGTATATTTCTCGCAGTCTCGGCATTCTCTTCTTTCAAGGTTTATGAATGTATGACCT-------CTTGTTTTTCTCATTATTTCTTCTACAAATACTGCAGTGGGAGTATCAAGTTGGTCCTAGTGTAGGTATTGAAGCTGGTGATCATATCTGGGCTTCTAGATACATCCTCGAGGTAATTCATTTTACCTACTTTTGGTTTATTTATAAACTGTATTACTGTT---GGACCATTTGATACAGAAAGGTTAACCTTTTCA---------------AA-ACATGTCATGGTAGCCTA--------ATCTATAGAAGTTT-CTGGTTCACTATAATACTTTATT---AAGGCTTTGACTTTTGTGCGGTTCTTGTGTTCATTTACAGGTGCATTTTAAGAAGTGGCTGTTTTATCCCAA--------TAAATAAATAA-ATTCAAGAAATGGCTCTTAGCACTAAGCTTGATACATAGTTAT-----------------------------------GTAC----------------TTATGTGTCATTCTCAACAGACAATTATTGACTGCA--------TAT------CTTTTTTA----------------ACAGATGCATAAGTCAAAGGTCGAA-GAC-AA-----TACACCCTAAATTAG----------------------------------GTACAATTCT---TAAGCATCTGTAAAGTT-TTAAGATCATAATAGGTAATTCAGCATTCGG-AACTACAAGTTTGAGGGCAGCTGGATGGCTCATACCATTGCTTGTAAAAGACAATTGCTGATGTTTC---GCTAAATCAAAATTTTGT-TCTATCTCTCTTGTCCCCTGTCTAATTTTGTATCTTCTGATTAAATGTGTTGCATTTTTTT-CTGTTCTGACAGAGGATTACTGAACAAGCTGGTGTTGTTCTCTCACTTGATCCAAAACCAATAGAGGTA---CTAAAATGGTGTAGTTGACAGTATTTCTTCTCGTGTGTTAATTATACTAATTGTTTTGATTTTTACCCTGGCAGGGTGACTGGAATGGTGCAGGATGCCACACCAACTACAGGTTTCTGGACTTGCCATTGTCATGAATCATCACTGCATGTGTCTTTTTGGGTTCCTATATTACTAAGTTGATGAAATATTATTTGCTTTTTAGTACAAAGAGC Sophora_davidii_H11 TGGGGAGGTTAT-GCCTGGGCAGGTATATTTCTCGCAGTCTCGGCATTCTCTTCTTTCAAGGTTTATGAATGTATGACCT-------CTTGTTTTTCTCATTATTTCTTCTACAAATACTGCAGTGGGAGTATCAAGTTGGTCCTAGTGTAGGTATTGAAGCTGGTGATCATATCTGGGCTTCTAGATACATCCTCGAGGTAATTCATTTTACCTACTTTTGGTTTATTTATAAACTGTATTACTGTT---GGACCATTTGATACAGAAAGGTTAACCTTTTCA---------------AA-ACATGTCATGGTAGCCTA--------ATCTATAGAAGTTT-CTGGTTCACTATAATACTTTATT---AAGGCTTTGACTTTTGTGCGGTTCTTGTGTTCATTTACAGGTGCATTTTAAGAAGTGGCTGTTTTATCCCAA--------TAAATAAATAA-ATTCAAGAAATGGCTCTTAGCACTAAGCTTGATACATAGTTAT-----------------------------------GTAC----------------TTATGTGTCATTCTCAACAGACAATTATTGACTGCA--------TAT------CTTTTTTA----------------ACAGATGCATAAGTCAAAGGTCGAA-GAC-AA-----TACACCCTAAATTAG----------------------------------GTACAATTCT---TAAGCATCTGTAAAGTT-TTAAGATCATAATAGGTAATTCAGCATTCGG-AACTACAAGTTTGAGGGCAGCTGGATGGCTCATACCATTGCTTGTAAAAGACAATTGCTGATGTTTC---GCTAAATCAAAATTTTGT-TCTATCTCTCTTGTCCCCTGTCTAATTTTGTATCTTCTGATTAAATGTGTTGCATTTTTTT-CTGTTCTGACAGAGGATTACTGAACAAGCTGGTGTTGTTCTCTCACTTGATCCAAAACCAATAGAGGTA---CTAAAATGGTGCAGTTGACAGTATTTCTTCTCGTGTGTTAATTATACTAATTGTTTTGATTTTTACCCTGGCAGGGTGACTGGAATGGTGCAGGATGCCACACCAACTACAGGTTTCTGGACTTGCCATTGTCATGAATCATCACTGCATGTGTCTTTTTGGGTTCCTATATTACTAAGTTGATGAAATATTATTTGCTTTTTAGTACAAAGAGC Sophora_davidii_H12 TGGGGAGGTTAT-GCCTGGGCAGGTATATTTCTCGCAGTCTCGGCATTCTCTTCTTTCAAGGTTTATGAATGTATGACCT-------CTTGTTTTTCTCATTATTTCTTCTACAAATACTGCAGTGGGAGTATCAAGTTGGTCCTAGTGTAGGTATTGAAGCTGGTGATCATATCTGGGCTTCTAGATACATCCTCGAGGTAATTCATTTTACCTACTTTTGGTTTATTTATAAACTGTATTACTGTT---GGACCATTTGATACAGAAAGGTTAACCTTTTCA---------------AAAACATGTCATGGTAGCCTA--------ATCTATAGAAGTTT-CTGGTTCACTATAATACTTTATT---AAGGCTTTGACTTTTGTGCGGTTCTTGTGTTCATTTACAGGTGCATTTTAAGAAGTGGCTGTTTTATCCCAA--------TAAATAAATAA-ATTCAAGAAATGGCTCTTAGCACTAAGCTTGATACATAGTTAT-----------------------------------GTAC----------------TTATGTGTCATTCTCAACAGACAATTATTGACTGCA--------TAT------CTTTTTTA----------------ACAGATGCATAAGTCAAAGGTCGAA-GAC-AA-----TACACCCTAAATTAG----------------------------------GTACAATTCT---TAAGCATCTGTAAAGTT-TTAAGATCATAAAAGGTAATTCAGCATTCGG-AACTACAAGTTTGAGGGCAGCTGGATGGCTCATACCATTGCTTGTAAAAGACAATTGCTGATGTTTC---GCTTAATCAAAATTTTGT-TCTATCTCTCTTGTCCCCTGTCTAATTTTGTATCTTCTGATTAAATGTGTTGCATTTTTTT-CTGTTCTGACAGAGGATTACTGAACAAGCTGGTGTTGTTCTCTCACTTGATCCAAAACCAATAGAGGTA---CTAAAATGGTGTAGTTGACAGTATTTCTTCTCGTGTGTTAATTATACTAATTGTTTTGATTTTTACCCTGGCAGGGTGACTGGAATGGTGCAGGATGCCACACCAACTACAGGTTTCTGGACTTGCCATTGTCATGAATCATCACTGCATGTGTCTTTTTGGGTTCCTATATTACTAAGTTGATGAAATATTATTTGCTTTTTAGTACAAAGAGC Sophora_davidii_H13 TGGGGAGGTTAT-GCCTGGGCAGGTATATTTCTCGCAGTCTCGGCATTCTCTTCTTTCAAGGTTTATGAATGTATGACCT-------CTTGTTTTTCTCATTATTTCTTCTACAAATACTGCAGTGGGAGTATCAAGTTGGTCCTAGTGTAGGTATTGAAGCTGGTGATCATATCTGGGCTTCTAGATACATCCTCGAGGTAATTCATTTTACCTACTTTTGGTTTATTTATAAACTGTATTACTGTT---GGACCATTTGATACAGAAAGGTTAACCTTTTCA---------------AAAACATGTCATGGTAGCCTA--------ATCTATAGAAGTTT-CTGGTTCACTATAATACTTTATT---AAGGCTTTGACTTTTGTGCGGTTCTTGTGTCCATTTACAGGTGCATTTTAAGAAGTGGCTGTTTTATCCCAA--------TAAATAAATAA-ATTCAAGAAATGGCTCTTAGCACTAAGCTTGATACATAGTTAT-----------------------------------GTAC----------------TTATGTGTCATTCTCAACAGACAATTATTGACTGCA--------TAT------CTTTTTTA----------------ACAGATGCATAAGTCAAAGGTCGAA-GAC-AA-----TACACCCTAAATTAG----------------------------------GTACAATTCT---TAAGCATCTGTAAAGTT-TTAAGATCATAAAAGGTAATTCAGCATTCGG-AACTACAAGTTTGAGGGCAGCTGGATGGCTCATACCATTGCTTGTAAAAGACAATTGCTGATGTTTC---GCTTAATCAAAATTTTGT-TCTATCTCTCTTGTCCCCTGTCTAATTTTGTATCTTCTGATTAAATGTGTTGCATTTTTTT-CTGTTCTGACAGAGGATTACTGAACAAGCTGGTGTTGTTCTCTCACTTGATCCAAAACCAATAGAGGTA---CTAAAATGGTGTAGTTGACAGTATTTCTTCTCGTGTGTTAATTATACTAATTGTTTTGATTTTTACCCTGGCAGGGTGACTGGAATGGTGCAGGATGCCACACCAACTACAGGTTTCTGGACTTGCCATTGTCATGAATCATCACTGCATGTGTCTTTTTGGGTTCCTATATTACTAAGTTGATGAAATATTATTTGCTTTTTAGTACAAAGAGC Sophora_davidii_H14 TGGGGAGGTTAT-GCCTGGGCAGGTATATTTCTCGCAGTCTCGCCATTCTCTTCTTTTAAGGTTTATGAATGTATGAACT-------CTTGTTTTTCTCATTATTTCTTCTACAAATATTGCAGTGGGAGTATCAAGTAGGTCCTAGTGTAGGTATTGAAGCTGGTGATCATATATGGGCTTCGAGATACATCCTCGAGGTAATTCATTTTACCTACTTTTGGTTTATTTATAAACTGTATTACTGTT---GGACCATTTGATACAGAAAGCTTAACCTTTTCA---------------AAGACATGACATGGTAGCCTA--------ATCTATAGAAGTTT-CTGGTTCACTATAATACTTTATT---AAGGCTTTGGCTTTTGTGCGGTTCTTGTGTTCATTTACAGGTGCATTTTAATAAGTGGCTGTTTTATCCCAA--------TAAATAACTGA-ATTCAAGAAATGGCTCTTAGCACTAAGCTTGATACGTAGTTAT-----------------------------------GTAC----------------TTATGTGTCATTCTCAACAGACAATTATTGACTGCA--------TAT------CTTTTT-A----------------ACAGATGCACAAGTCAAAGGTCAAA-GAC-AA-----TAAACCCTAAATTAG----------------------------------GTACAATTCT---TAAGCATCTGTAAAGTT-TTAAGATCATAAAAGGTAATTCAGCATTCGG-AACTACAAGTTTGAGGGCAGGTGGAAGGCTCATGCCATTGCTTGTAGAAGACAATTGCTGATGTTCTT--GTTTAATCAAAGTTTTGT-TCTAGCTCTCTTGTCCCCTATCTAAGCTTGTATCTTCTGATTA-ATGTGTTGCATTTTTTT-CTGTTCTGACAGAGGATTACTGAACAAGCTGGTGTTGTTCTCTCACTTGATCCAAAACCAATAGAGGTA---CTAAAATGGTGTAGTTGATAGTATTTCTTCTCGTGTGTTAATTATACTAATTGTTTTGATTTTTGCCCTTGCAGGGTGACTGGAATGGTGCAGGATGCCACACCAACTACAGGTTTCTGGACTTGCCATTGTCATGAATCATCACTGCATGTGTCTTTTTGAGTTCCTATATTACTAAGTTGATGAAATATTATTTGCTTTTTAGTACAAAGAGC Sophora_davidii_H15 TGGGGAGGTTAT-GCCTGGGCAGGTATATTTCTCGCAGTCTCGGCATTCTCTTCTTTCAAGGTTTATGAATGTATGACCT-------CTTGTTTTTCGCATTATTTCTTCTACAAATACTGCAGTGGGAGTATCAAGTTGGTCCTAGTGTAGGTATTGAAGCTGGTGATCATATCTGGGCTTCTAGATACATCCTCGAGGTAATTCATTTTACCTACTTTTGGTTTATTTATAAACTGTATTACTGTT---GGACCATTTGATACAGAAAGGTTAACCTTTTCA---------------AAAACATGTCATGGTAGCCTA--------ATCTATAGAAGTTT-CTGGTTCACTATAATACTTTATT---AAGGCTTTGACTTTTGTGCGGTTCTTGTGTTCATTTACAGGTGCATTTTAAGAAGTGGCTGTTTTATCCCAA--------TAAATAAATAA-ATTCAAGAAATGGCTCTTAGCACTAAGCTTGATACATAGTTAT-----------------------------------GTAC----------------TTATGTGTCATTCTCAACAGACAATTATTGACTGCA--------TAT------CTTTTTTA----------------ACAGATGCATAAGTCAAAGGTCGAA-GAC-AA-----TACACCCTAAATTAG----------------------------------GTACAATTCT---TAAGCATCTGTAAAGTT-TTAAGATCATAAAAGGTAATTCAGCATTCGG-AACTACAAGTTTGAGGGCAGCTGGATGGCTCATACCATTGCTTGTAAAAGACAATTGCTGATGTTTC---GCTTAATCAAAATTTTGT-TCTATCTCTCTTGTCCCCTGTCTAATTTTGTATCTTCTGATTAAATGTGTTGCATTTTTTT-CTGTTCTGACAGAGGATTACTGAACAAGCTGGTGTTGTTCTCTCACTTGATCCAAAACCAATAGAGGTA---CTAAAATGGTGTAGTTGACAGTATTTCTTCTCGTGTGTTAATTATACTAATTGTTTTGATTTTTACCCTGGCAGGGTGACTGGAATGGTGCAGGATGCCACACCAACTACAGGTTTCTGGACTTGCCATTGTCATGAATCATCACTGCATGTGTCTTTTTGGGTTCCTATATTACTAAGTTGATGAAATATTATTTGCTTTTTAGTACAAAGAGC Sophora_davidii_H16 TGGGGAGGTTAT-GCCTGGGCAGGTATATTTCTCACAGTCTCGGCATTCTCTTCTTTCAAGGTTTATGAATGTATGACCT-------CTTGTTTTTCGCATTATTTCTTCTACAAATACTGCAGTGGGAGTATCAAGTTGGTCCTAGTGTAGGTATTGAAGCTGGTGATCATATCTGGGCTTCTAGATACATCCTCGAGGTAATTCATTTTACCTACTTTTGGTTTATTTATAAACTGTATTACTGTT---GGACCATTTGATACAGAAAGGTTAACCTTTTCA---------------AAAACATGTCATGGTAGCCTA--------ATCTATAGAAGTTT-CTGGTTCACTATAATACTTTATT---AAGGCTTTGACTTTTGTGCGGTTCTTGTGTTCATTTACAGGTGCATTTTAAGAAGTGGCTGTTTTATCCCAA--------TAAATAAATAA-ATTCAAGAAATGGCTCTTAGCACTAAGCTTGATACATAGTTAT-----------------------------------GTAC----------------TTATGTGTCATTCTCAACAGACAATTATTGACTGCA--------TAT------CTTTTTTA----------------ACAGATGCATAAGTCAAAGGTCGAA-GAC-AA-----TACACCCTAAATTAG----------------------------------GTACAATTCT---TAAGCATCTGTAAAGTT-TTAAGATCATAAAAGGTAATTCAGCATTCGG-AACTACAAGTTTGAGGGCAGCTGGATGGCTCATACCATTGCTTGTAAAAGACAATTGCTGATGTTTC---GCTTAATCAAAATTTTGT-TCTATCTCTCTTGTCCCCTGTCTAATTTTGTATCTTCTGATTAAATGTGTTGCATTTTTTT-CTGTTCTGACAGAGGATTACTGAACAAGCTGGTGTTGTTCTCTCACTTGATCCAAAACCAATAGAGGTA---CTAAAATGGTGTAGTTGACAGTATTTCTTCTCGTGTGTTAATTATACTAATTGTTTTGATTTTTACCCTGGCAGGGTGACTGGAATGGTGCAGGATGCCACACCAACTACAGGTTTCTGGACTTGCCATTGTCATGAATCATCACTGCATGTGTCTTTTTGGGTTCCTATATTACTAAGTTGATGAAATATTATTTGCTTTTTAGTACAAAGAGC Sophora_davidii_H17 TGGGGAGGTTAT-GCCTGGGCAGGTATATTTCTCGCAGTCTCGGCATTCTCTTCTTTCAAGGTTTATGAATGTATGACCT-------CTTGTTTTTCTCATTATTTCTTCTACAAATACTGCAGTGGGAGTATCAAGTTGGTCCTAGTGTAGGTATTGAAGCTGGTGATCATATCTGGGCTTCTAGATACATCCTCGAGGTAATTCATTTTACCTACTTTTGGTTTATTTATAAACTGTATTACTGTT---GGACCATTTGATACAGAAAGGTTAACCTTTTCA---------------AAAACATGTCATGGTAGCCTA--------ATCTATAGAAGTTT-CTGGTTCACTATAATACTTTATT---AAGGCTTTGACTTTTGTGCGGTTCTTGTGTTCATTTACAGGTGCATTTTAAGAAGTGGCTGTTTTATCCCAA--------TAAATAAATAA-ATTCAAGAAATGGCTCTTAGCACTAAGCTTGATACATAGTTAT-----------------------------------GTAC----------------TTATGTGTCATTCTCAACAGACAATTATTGACTGCA--------TAT------CTTTTTTA----------------ACAGATGCATAAGTCAAAGGTCGAA-GAC-AA-----TACACCCTAAATTAG----------------------------------GTACAATTCT---TAAGCATCTGTAAAGTT-TTAAGATCATAAAAGGTAATTCAGCATTCGG-AACTACAAGTTTGAGGGCAGCTGGATGGCTCATACCATTGCTTGTAAAAGACAATTGCTGATGTTTC---GCTTAATCAAAATTTTGT-TCTATCTCTCTTGTCCCCTGTCTAATTTTGTATCTTCTGATTAAATGTGTTGCATTCTTTT-CTGTTCTGACAGAGGATTACTGAACAAGCTGGTGTTGTTCTCTCACTTGATCCAAAACCAATAGAGGTA---CTAAAATGGTGTAGTTGACAGTATTTCTTCTCGTGTGTTAATTATACTAATTGTTTTGATTTTTACCCTGGCAGGGTGACTGGAATGGTGCAGGATGCCACACCAACTACAGGTTTCTGGACTTGCCATTGTCATGAATCATCACTGCATGTGTCTTTTTGGGTTCCTATATTACTAAGTTGATGAAATATTATTTGCTTTTTAGTACAAAGAGC Sophora_davidii_H18 TGGGGAGGTTAT-GCCTGGGCAGGTATATTTCTCGCAGTCTCGGCATTCTCTTCTTTCAAGGTTTATGAATGTATGACCT-------CTTGTTTTTCTCATTATTTCTTCTACAAATACTGCAGTGGGAGTATCAAGTTGGTCCTAGTGTAGGTATTGAAGCTGGTGATCATATCTGGGCTTCTAGATACATCCTCGAGGTAATTCATTTTACCTACTTTTGGTTTATTTATAAACTGTATTACTGTT---GGACCATTTGATACAGAAAGGTTAACCTTTTCA---------------AAAACATGTCATGGTAGCCTA--------ATCTATAGAAGTTT-CTGGTTCACTATAATACTTTATT---AAGGCTTTGACTTTTGTGCGGTTCTTGTGTTCATTTACAGGTGCATTTTAAGAAGTGGCTGTTTTATCCCAA--------TAAATAAATAA-ATTCAAGAAATGGCTCTTAGCACTAAGCTTGATACATAGTTAT-----------------------------------GTAC----------------TTATGTGTCATTCTCAACAGACAATTATTGACTGCA--------TAT------CTTTTTTA----------------ACAGATGCATAAGTCAAAGGTCGAA-GAC-AA-----TACACCCTAAATTAG----------------------------------GTACAATTCT---TAAGCATCTGTAAAGTT-TTAAGATCATAAAAGGTAATTCAGCATTCGG-AACTACAAGTTTGAGGGCAGCTGGATGGCTCATACCATTGCTTGTAAAAGACAATTGCTGATGTTTC---GCTTAATCAAAATTTTGT-TCTATCTCTCTTGTCCCCTGTCTAATTTTGTATCTTCTGATTAAATGTGTTGCATTCTTTT-CTGTTCTGACAGAGGATTACTGAACAAGCTGGTGTTGTTCTCTCACTTGATCCAAAACCAATAGAGGTA---CTAAAATGGTGTAGTTGACAGTATTTCTTCTCGTGTGTTAATTATACTAATTGTTTTGATTTTTACCCTGGCAGGGTGACTGGAATGGTGCAGGATGCCACACCAACTACAGGTTTCTGCACTTGCCATTGTCATGAATCATCACTGCATGTGTCTTTTTGGGTTCCTATATTACTAAGTTGATGAAATATTATTTGCTTTTTAGTACAAAGAGC Sophora_davidii_H19 TGGGGAGGTTAT-GCCTGGGCAGGTATATTTCTCGCAGTCTCGGCATTCTCTTCTTTCAAGGTTTATGAATGTATGACCT-------CTTGTTTTTCTCATTATTTCTTCTACAAATACTGCAGTGGGAGTATCAAGTTGGTCCTAGTGTAGGTATTGAAGCTGGTGATCATATCTGGGCTTCTAGATACATCCTCGAGGTAATTCATTTTACCTACTTTTGGTTTATTTATAAACTGTATTACTGTT---GGACCATTTGATACAGAAAGGTTAACCTTTTCA---------------AAAACATGTCATGGTAGCCTA--------ATCTATAGAAGTTT-CTGGTTCACTATAATACGTTATT---AAGGCTTTGACTTTTGTGCGGTTCTTGTGTTCATTTACAGGTGCATTTTAAGAAGTGGCTGTTTTATCCCAA--------TAAATAAATAA-ATTCAAGAAATGGCTCTTAGCACTAAGCTTGATACATAGTTAT-----------------------------------GTAC----------------TTATGTGTCATTCTCAACAGACAATTATTGACTGCA--------TAT------CTTTTTTA----------------ACAGATGCATAAGTCAAAGGTCGAA-GAC-AA-----TACACCCTAAATTAG----------------------------------GTACAATTCT---TAAGCATCTGTAAAGTT-TTAAGATCATAAAAGGTAATTCAGCATTCGG-AACTACAAGTTTGAGGGCAGCTGGATGGCTCATACCATTGCTTGTAAAAGACAATTGCTGATGTTTC---GCTTAATCAAAATTTTGT-TCTATCTCTCTTGTCCCCTGTCTAATTTTGTATCTTCTGATTAAATGTGTTGCATTCTTTT-CTGTTCTGACAGAGGATTACTGAACAAGCTGGTGTTGTTCTCTCACTTGATCCAAAACCAATAGAGGTA---CTAAAATGGTGTAGTTGACAGTATTTCTTCTCGTGTGTTAATTATACTAATTGTTTTGATTTTTACCCTGGCAGGGTGACTGGAATGGTGCAGGATGCCACACCAACTACAGGTTTCTGGACTTGCCATTGTCATGAATCATCACTGCATGTGTCTTTTTGGGTTCCTATATTACTAAGTTGATGAAATATTATTTGCTTTTTAGTACAAAGAGC Sophora_davidii_H2 TGGGGAGGTTAT-GCCTGGGCAGGTATATTTCTCGCAGTCTCGGCATTCTCTTCTTTCAAGGTTTATGAATGTATGACCT-------CTTGTTTTTCTCATTATTTCTTCTACAAATACTGCAGTGGGAGTATCAAGTTGGTCCTAGTGTAGGTATTGAAGCTGGTGATCATATCTGGGCTTCTAGATACATCCTCGAGGTAATTCATTTTACCTACTTTTGGTTTATTTATAAACTGTATTGCTGTT---GGACCATTTGATACAGAAAGGTTAACCTTTTCA---------------AAAACATGTCATGGTAGCCTA--------ATCTATAGAAGTTT-CTGGTTCACTATAATACTTTATT---AAGGCTTTGACTTTTGTGCGGTTCTTGTGTTCATTTACAGGTGCATTTTAAGAAGTGGCTGTTTTATCCCAA--------TAAATAAATAA-ATTCAAGAAATGGCTCTTAGCACTAAGCTTGATACATAGTTAT-----------------------------------GTAC----------------TTATGTGTCATTCTCAACAGACAATTATTGACTGCA--------TAT------CTTTTTTG----------------ACAGATGCATAAGTCAAAGGTCGAA-GAC-AA-----TACACCCTAAATTAG----------------------------------GTACAATTCT---TAAGCATCTGTAAAGTT-TTAAGTTCATAATAGGTAATTCAGCATTCGG-AACTACAAGTTTGAGGGCAGCTGGATGGCTCATACCATTGCTTGTAAAAGACAATTGCTGATGTTTC---GCTTAATCAAAATTTTGT-CCTATCTCTCTTGTCCCCTGTCTAATTTTGTATCTTCTGATTAAATGTGTTGCATTTTTTT-CTGTTCTGACAGAGGATTACTGAACAAGCTGGTGTTGTTCTCTCACTTGATCCAAAACCAATAGAGGTA---CTAAAATGGTGTAGTTGACAGTATTTCTTCTCGTGTGTTAATTATACTAATTGTTTTGATTTTTACCCTGGCAGGGTGACTGGAATGGTGCAGGATGCCACACCAACTACAGGTTTCTGGACTTGCCATTGTCATGAATCATCACTGCATGTGTCTTTTTGGGTTCCTATATTACTAAGTTGATGAAATATTATTTGCTTTTTAGTACAAAGAGC Sophora_davidii_H20 TGGGGAGGTTAT-GCCTGGGCAGGTATATTTCTCGCAGTCTCGGCATTCTCTTCTTTCAAGGTTTATGAATGTATGACCT-------CTTGTTTTTCTCATTATTTCTTCTACAAATACTGCAGTGGGAGTATCAAGTTGGTCCTAGTGTAGGTATTGAAGCTGGCGATCATATCTGGGCTTCTAGATACATCCTCGAGGTAATTCATTTTACCTACTTTTGGTTTATTTATAAACTGTATTACTGTT---GGACCATTTGATACAGAAAGGTTAACCTTTTCA---------------AAAACATGTCATGGTAGCCTA--------ATCTATAGAAGTTT-CTGGTTCACTATAATACTTTATT---AAGGCTTTGACTTTTGTGCGGTTCTTGTGTTCATTTACAGGTGCATTTTAAGAAGTGGCTGTTTTATCCCAA--------TAAATAAATAA-ATTCAAGAAATGGCTCTTAGCACTAAGCTTGATACATAGTTAT-----------------------------------GTAC----------------TTATGTGTCATTCTCAACAGACAATTATTGACTGCA--------TAT------CTTTTTTA----------------ACAGATGCATAAGTCAAAGGTCGAA-GAC-AA-----TACACCCTAAATTAG----------------------------------GTACAATTCT---TAAGCATCTGTAAAGTT-TTAAGATCATAAAAGGTAATTCAGCATTCGG-AACTACAAGTTTGAGGGCAGCTGGATGGCTCATACCATTGCTTGTAAAAGACAATTGCTGATGTTTC---GCTTAATCAAAATTTTGT-TCTATCTCTCTTGTCCCCTGTCTAATTTTGTATCTTCTGATTAAATGTGTTGCATTCTTTT-CTGTTCTGACAGAGGATTACTGAACAAGCTGGTGTTGTTCTCTCACTTGATCCAAAACCAATAGAGGTA---CTAAAATGGTGTAGTTGACAGTATTTCTTCTCGTGTGTTAATTATACTAATTGTTTTGATTTTTACCCTGGCAGGGTGACTGGAATGGTGCAGGATGCCACACCAACTACAGGTTTCTGGACTTGCCATTGTCATGAATCATCACTGCATGTGTCTTTTTGGGTTCCTATATTACTAAGTTGATGAAATATTATTTGCTTTTTAGTACAAAGAGC Sophora_davidii_H21 TGGGGAGGTTAT-GCCTGGGCAGGTATATTTCTCGCAGTCTCGGCATTCTCTTCTTTCAAGGTTTATGAATGTATGACCT-------CTTGTTTTTCTCATTATTTCTTCTACAAATACTGCAGTGGGAGTATCAAGTTGGTCCTAGTGTAGGTATTGAAGCTGGTGATCATATCTGGGCTTCTAGATACATCCTCGAGGTAATTCATTTTACCTACTTTTGGTTTATTTATAAACTGTATTACTGTT---GGACCATTTGATACAGAAAGGTTAACCTTTTCA---------------AAAACATGTCATGGTAGCCTA--------ATCTATAGAAGTTT-CTGGTTCACTATAATACTTTATT---AAGGCTTTGACTTTTGTGCGGTTCTTGTGTTCATTTACAGGTGCATTTTAAGAAGTGGCTGTTTTATCCCAA--------TAAATAAATAA-ATTCAAGAAATGGCTCTTAGCACTAAGCTTGATACATAGTTAT-----------------------------------GTAC----------------TTATGTGTCATTCTCAACAGACAATTATTGACTGCA--------TAT------CTTTTTTA----------------ACAGATGCATAAGTCAAAGGTCGAA-GAC-AAA----TACACCCTAAATTAG----------------------------------GTACAATTCT---TAAGCATCTGTAAAGTT-TTAAGATCATAAAAGGTAATTCAGCATTCGG-AACTACAAGTTTGAGGGCAGCTGGATGGCTCATACCATTGCTTGTAAAAGACAATTGCTGATGTTTC---GCTTAATCAAAATTTTGT-TCTATCTCTCTTGTCCCCTGTCTAATTTTGTATCTTCTGATTAAATGTGTTGCATTTTTTT-CTGTTCTGACAGAGGATTACTGAACAAGCTGGTGTTGTTCTCTCACTTGATCCAAAACCAATAGAGGTA---CTAAAATGGTGTAGTTGACAGTATTTCTTCTCGTGTGTTAATTATACTAATTGTTTTGATTTTTACCCTGGCAGGGTGACTGGAATGGTGCAGGATGCCACACCAACTACAGGTTTCTGGACTTGCCATTGTCATGAATCATCACTGCATGTGTCTTTTTGGGTTCCTATATTACTAAGTTGATGAAATATTATTTGCTTTTTAGTACAAAGAGC Sophora_davidii_H22 TGGGGAGGTTAT-GCCTGGGCAGGTATATTTCTCACAGTCTCGGCATTCTCTTCTTTCAAGGTTTATGAATGTATGACCT-------CTTGTTTTTCTCATTATTTCTTCTACAAATACTGCAGTGGGAGTATCAAGTTGGTCCTAGTGTAGGTATTGAAGCTGGTGATCATATCTGGGCTTCTAGATACATCCTCGAGGTAATTCATTTTACCTACTTTTGGTTTATTTATAAACTGTATTACTGTT---GGACCATTTGATACAGAAAGGTTAACCTTTTCA---------------AAAACATGTCATGGTTGCCTA--------ATCTATAGAAGTTT-CTGGTTCACTATAATACTTTATT---AAGGCTTTGACTTTTGTGCGGTTCTTGTGTTCATTTACAGGTGCATTTTAAGAAGTGGCTGTTTTATCCCAA--------TAAATAAATAA-ATTCAAGAAATGGCTCTTAGCACTAAGCTTGATACATAGTTAT-----------------------------------GTAC----------------TTATGTGTCATTCTCAACAGACAATTATTGACTGCA--------TAT------CTTTTTTA----------------ACAGATGCATAAGTCAAAGGTCGAA-G-C-AA-----TACACCCTAAATTAG----------------------------------GTACAATTCT---TAAGCATCTGTAAAGTT-TTAAGATCATAAAAGGTAATTCAGCATTCGG-AACTACAAGTTTGAGGGCAGCTGGATGGCTCATACCATTGCTTGTAAAAGACAATTGCTGATGTTTC---GCTTAATCAAAATTTTGT-TCTATCTCTCTTGTCCCCTGTCTAATTTTGTATCTTCTGATTAAATGTGTTGCATTTTTTT-CTGTTCTGACAGAGGATTACTGAACAAGCTGGTGTTGTTCTCTCACTTGATCCAAAACCAATAGAGGTCT--CTAAAATGGTGTAGTTGACAGTATTTCTTCTCGTGTGTTAATTATACTAATTGTTTTGATTTTTACCCTGGCAGGGTGACTGGAATGGTGCAGGATGCCACACCAACTACAGGTTTCTGGACTTGCCATTGTCATGAATCATCACTGCATGTGTCTTTTTGGGTTCCTATATTACTAAGTTGATGAAATATTATTTGCTTTTTAGTACAAAGAGC Sophora_davidii_H23 TGGGGAGGTTAT-GCCTGGGCAGGTATATTTCTCACAGTCTCGGCATTCTCTTCTTTCAAGGTTTATGAATGTATGACCT-------CTTGTTTTTCTCATTATTTCTTCTACAAATACTGCAGTGGGAGTATCAAGTTGGTCCTAGTGTAGGTATTGAAGCTGGTGATCATATCTGGGCTTCTAGATACATCCTCGAGGTAATTCATTTTACCTACTTTTGGTTTATTTATAAACTGTATTACTGTT---GGACCATTTGATACAGAAAGGTTAACCTTTTCA---------------AAAACATGTCATGGTTGCCTA--------ATCTATAGAAGTTT-CTGGTTCACTATAATACTTTATT---AAGGCTTTGACTTTTGTGCGGTTCTTGTGTTCATTTACAGGTGCATTTTAAGAAGTGGCTGTTTTATCCCAA--------TAAATAAATAA-ATTCAAGAAATGGCTCTTAGCACTAAGCTTGATACATAGTTAT-----------------------------------GTAC----------------TTATGTGTCATTCTCAACAGACAATTATTGACTGCA--------TAT------CTTTTTTA----------------ACAGATGCATAAGTCAAAGGTCGAA-G-C-AA-----TACACCCTAAATTAG----------------------------------GTACAATTCT---TAAGCATCTGTAAAGTT-TTAAGATCATAAAAGGTAATTCAGCATTCGG-AACTACAAGTTTGAGGGCAGCTGGATGGCTCATACCATTGCTTGTAAAAGACAATTGCTGATGTTTC---GCTTAATCAAAATTTTGT-TCTATCTCTC--GTCCCCTGTCTAATTTTGTATCTTCTGATTAAATGTGTTGCATTTTTTT-CTGTTCTGACAGAGGATTACTGAACAAGCTGGTGTTGTTCTCTCACTTGATCCAAAACCAATAGAGGTCT--CTAAAATGGTGTAGTTGACAGTATTTCTTCTCGTGTGTTAATTATACTAATTGTTTTGATTTTTACCCTGGCAGGGTGACTGGAATGGTGCAGGATGCCACACCAACTACAGGTTTCTGGACTTGCCATTGTCATGAATCATCACTGCATGTGTCTTTTTGGGTTCCTATATTACTAAGTTGATGAAATATTATTTGCTTTTTAGTACAAAGAGC Sophora_davidii_H3 TGGGGAGGTTAT-GCCTGGGCAGGTATATTTCTCGCAGTCTCGGCATTCTCTTCTTTCAAGGTTTATGAATGTATGACCT-------CTTGTTTTTCTCATTATTTCTTCTACAAATACTGCAGTGGGAGTATCAAGTTGGTCCTAGTGTAGGTATTGAAGCTGGTGATCATATCTGGGCTTCTAGATACATCCTCGAGGTAATTCATTTTACCTACTTTTGGTTTATTTATAAACTGTATTGCTGTT---GGACCATTTGATACAGAAAGGTTAACCTTTTCA---------------AAAACATGTCATGGTAGCCTA--------ATCTATAGAAGTTT-CTGGTTCACTATAATACTTTATT---AAGGCTTTGACTTTTGTGCGGTTCTTGTGTTCATTTACAGGTGCATTTTAAGAAGTGGCTGTTTTATCCCAA--------TAAATAAATAA-ATTCAAGAAATGGCTCTTAGCACTAAGCTTGATACATAGTTAT-----------------------------------GTAC----------------TTATGTGTCAATCTCAACAGACAATTATTGACTGCA--------TAT------CTTTTTTG----------------ACAGATGCATAAGTCAAAGGTCGAA-GAC-AA-----TACACCCTAAATTAG----------------------------------GTACAATTCT---TAAGCATCTGTAAAGTT-TTAAGTTCATAATAGGTAATTCAGCATTCGG-AACTACAAGTTTGAGGGCAGCTGGATGGCTCATACCATTGCTTGTAAAAGACAATTGCTGATGTTTC---GCTTAATCAAAATTTTGT-CCTATCTCTCTTGTCCCCTGTCTAATTTTGTATCTTCTGATTAAATGTGTTGCATTTTTTT-CTGTTCTGACAGAGGATTACTGAACAAGCTGGTGTTGTTCTCTCACTTGATCCAAAACCAATAGAGGTA---CTAAAATGGTGTAGTTGACAGTATTTCTTCTCGTGTGTTAATTATACTAATTGTTTTGATTTTTACCCTGGCAGGGTGACTGGAATGGTGCAGGATGCCACACCAACTACAGGTTTCTGGACTTGCCATTGTCATGAATCATCACTGCATGTGTCTTTTTGGGTTCCTATATTACTAAGTTGATGAAATATTATTTGCTTTTTAGTACAAAGAGC Sophora_davidii_H4 TGGGGAGGTTAT-GCCTGGGCAGGTATATTTCTCGCAGTCTCGGCATTCTCTTCTTTCAAGGTTTATGAATGTATGACCT-------CTTGTTTTTCTCATTATTTCTTCTACAAATACTGCAGTGGGAGTATCAAGTTGGTCCTAGTGTAGGTATTGAAGCTGGTGATCATATCTGGGCTTCTAGATACATCCTCGAGGTAATTCATTTTACCTACTTTTGGTTTATTTATAAACTGTATTGCTGTT---GGACCATTTGATACAGAAAGGTTAACCTTTTCA---------------AAAACATGTCATGGTAGCCTA--------ATCTATAGAAGTTT-CTGGTTCACTATAATACTTTATT---AAGGCTTTGACTTTTGTGCGGTTCTTGTGTTCATTTACAGGTGCATTTTAAGAAGTGGCTGTTTTATCCCAA--------TAAATAAATAA-ATTCAAGAAATGGCTCTTAGCACTAAGCTTGATGCATAGTTAT-----------------------------------GTAC----------------TTATGTGTCATTCTCAACAGACAATTATTGACTGCA--------TAT------CTTTTTTG----------------ACAGATGCATAAGTCAAAGGTCGAA-GAC-AA-----TACACCCTAAATTAG----------------------------------GTACAATTCT---TAAGCATCTGTAAAGTT-TTAAGTTCATAATAGGTAATTCAGCATTCGG-AACTACAAGTTTGAGGGCAGCTGGATGGCTCATACCATTGCTTGTAAAAGACAATTGCTGATGTTTC---GCTTAATCAAAATTTTGT-CCTATCTCTCTTGTCCCCTGTCTAATTTTGTATCTTCTGATTAAATGTGTTGCATTTTTTT-CTGTTCTGACAGAGGATTACTGAACAAGCTGGTGTTGTTCTCTCACTTGATCCAAAACCAATAGAGGTA---CTAAAATGGTGTAGTTGACAGTATTTCTTCTCGTGTGTTAATTATACTAATTGTTTTGATTTTTACCCTGGCAGGGTGACTGGAATGGTGCAGGATGCCACACCAACTACAGGTTTCTGGACTTGCCATTGTCATGAATCATCACTGCATGTGTCTTTTTGGGTTCCTATATTACTAAGTTGATGAAATATTATTTGCTTTTTAGTACAAAGAGC Sophora_davidii_H5 TGGGGAGGTTAT-GCCTGGGCAGGTATATTTCTCGCAGTCTCGGCATTCTCTTCTTTCAAGGTTTATGAATGTATGACCT-------CTTGTTTTTCTCATTATTTCTTCTACAAATACTGCAGTGGGAGTATCAAGTTGGTCCTAGTGTAGGTATTGAAGCTGGTGATCATATCTGGGCTTCTAGATACATCCTCGAGGTAATTCATTTTACCTACTTTTGGTTTATTTATAAACTGTATTGCTGTT---GGACCATTTGATACAGAAAGGTTAACCTTTTCA---------------AAAACATGTCATGGTAGCCTA--------CTCTATAGAAGTTT-CTGGTTCACTATAATACTTTATT---AAGGCTTTGACTTTTGTGCGGTTCTTGTGTTCATTTACAGGTGCATTTTAAGAAGTGGCTGTTTTATCCCAA--------TAAATAAATAA-ATTCAAGAAATGGCTCTTAGCACTAAGCTTGATACATAGTTAT-----------------------------------GTAC----------------TTATGTGTCATTCTCAACAGACAATTATTGACTGCA--------TAT------CTTTTTTG----------------ACAGATGCATAAGTCAAAGGTCGAA-GAC-AA-----TACACCCTAAATTAG----------------------------------GTACAATTCT---TAAGCATCTGTAAAGTT-TTAAGTTCATAATAGGTAATTCAGCATTCGG-AACTACAAGTTTGAGGGCAGCTGGATGGCTCATACCATTGCTTGTAAAAGACAATTGCTGATGTTTC---GCTTAATCAAAATTTTGT-CCTATCTCTCTTGTCCCCTGTCTAATTTTGTATCTTCTGATTAAATGTGTTGCATTTTTTT-CTGTTCTGACAGAGGATTACTGAACAAGCTGGTGTTGTTCTCTCACTTGATCCAAAACCAATAGAGGTA---CTAAAATGGTGTAGTTGACAGTATTTCTTCTCGTGTGTTAATTATACTAATTGTTTTGATTTTTACCCTGGCAGGGTGACTGGAATGGTGCAGGATGCCACACCAACTACAGGTTTCTGGACTTGCCATTGTCATGAATCATCACTGCATGTGTCTTTTTGGGTTCCTATATTACTAAGTTGATGAAATATTATTTGCTTTTTAGTACAAAGAGC Sophora_davidii_H6 TGGGGAGGTTAT-GCCTGGGCAGGTATATTTCTCGCAGTCTCGGCATTCTCTTCTTTCAAGGTTTATGAATGTATGACCT-------CTTGTTTTTCTCATTATTTCTTCTACAAATACTGCAGTGGGAGTATCAAGTTGGTCCTAGTGTAGGTATTGAAGCTGGTGATCATATCTGGGCTTCTAGATACATCCTCGAGGTAATTCATTTTACCTACTTTTGGTTTATTTATAAACTGTATTACTGTT---GGACCATTTGATACAGAAAGGTTAACCTTTTCA---------------AAAACATGTCATGGTAGCCTA--------ATCTATAGAAGTTT-CTGGTTCACTATAATACTTTATT---AAGGCTTTGACTTTTGTGCGGTTCTTGTGTTCATTTACAGGTGCATTTTAAGAAGTGGCTGTTTTATCCCAA--------TAAATAAATAA-ATTCAAGAAATGGCTCTTAGCACTAAGCTTGATACATAGTTAT-----------------------------------GTAC----------------TTATGTGTCATTCTCAACAGACAATTATTGACTGCA--------TAT------CTTTTTTA----------------ACAGATGCATAAGTCAAAGGTCGAA-GAC-AA-----TACACCCTAAATTAG----------------------------------GTACAATTCT---TAAGCATCTGTAAAGTT-TTAAGTTCATAATAGGTAATTCAGCATTCGG-AACTACAAGTTTGAGGGCAGCTGGATGGCTCATACCATTGCTTGTAAAAGACAATTGCTGATGTTTC---GCTTAATCAAAATTTTGT-TCTATCTCTCTTGTCCCCTGTCTAATTTTGTATCTTCTGATTAAATGTGTTGCATTTTTTT-CTGTTCTGACAGAGGATTACTGAACAAGCTGGTGTTGTTCTCTCACTTGATCCAAAACCAATAGAGGTA---CTAAAATGGTGTAGTTGACAGTATTTCTTCTCGTGTGTTAATTATACTAATTGTTTTGATTTTTACCCTGGCAGGGTGACTGGAATGGTGCAGGATGCCACACCAACTACAGGTTTCTGGACTTGCCATTGTCATGAATCATCACTGCATGTGTCTTTTTGGGTTCCTATATTACTAAGTTGATGAAATATTATTTGCTTTTTAGTACAAAGAGC Sophora_davidii_H7 TGGGGAGGTTAT-GCCTGGGCAGGTATATTTCTCGCAGTCTCGGCATTCTCTTCTTTCAAGGTTTATGAATGTATGACCT-------CTTGTTTTTCTCATTATTTCTTCTACAAATACTGCAGTGGGAGTATCAAGTTGGTCCTAGTGTAGGTATTGAAGCTGGTGATCATATCTGGGCTTCTAGATACATCCTCGAGGTAATTCATTTTACCTACTTTTGGTTTATTTATAAACTGTATTACTGTT---GGACCATTTGATACAGAAAGGTTAACCTTTTCA---------------AAAACATGTCATGGTAGCCTA--------ATCTATAGAAGTTT-CTGGTTCACTATAATACTTTATT---AAGGCTTTGACTTTTGTGCGGTTCTTGTGTTCATTTACAGGTGCATTTTAAGAAGTGGCTGTTTTATCCCAA--------TAAATAAATAA-ATTCAAGAAATGGCTCTTAGCACTAAGCTTGATACATAGTTAT-----------------------------------GTAC----------------TTATGTGTCATTCTCAACAGACAATTATTGACTGCA--------TAT------CTTTTTCA----------------ACAGATGCATAAGTCAAAGGTCGAA-GAC-AA-----TACACCCTAAATTAG----------------------------------GTACAATTCT---TAAGCATCTGTAAAGTT-TTAAGATCATAATAGGTAATTCAGCATTCGG-AACTACAAGTTTGAGGGCAGCTGGATGGCTCATACCATTGCTTGTAAAAGACAATTGCTGATGTTTC---GCTTAATCAAAATTTTGT-TCTATCTCTCTTGTCCCCTGTCTAATTTTGTATCTTCTGATTAAATGTGTTGCATTTTTTT-CTGTTCTGACAGAGGATTACTGAACAAGCTGGTGTTGTTCTCTCACTTGATCCAAAACCAATAGAGGTA---CTAAAATGGTGTAGTTGACAGTATTTCTTCTCGTGTGTTAATTATACTAATTGTTTTGATTTTTACCCTGGCAGGGTGACTGGAATGGTGCAGGATGCCACACCAACTACAGGTTTCTGGACTTGCCATTGTCATGAATCATCACTGCATGTGTCTTTTTGGGTTCCTATATTACTAAGTTGATGAAATATTATTTGCTTTTTAGTACAAAGAGC Sophora_davidii_H8 TGGGGAGGTTAT-GCCTGGGCAGGTATATTTCTCGCAGTCTCGGCATTCTCTTCTTTCAAGGTTTATGAATGTATGACCT-------CTTGTTTTTCTCATTATTTCTTCTACAAATACTGCAGTGGGAGTATCAAGTTGGTCCTAGTGTAGGTATTGAAGCTGGTGATCATATCTGGGCTTCTAGATACATCCTCGAGGTAATTCATTTTACCTACTTTTGGTTTATTTATAAACTGTATTACTGTT---GGACCATTTGATACAGAAAGGTTAACCTTTTCA---------------AAAACATGTCATGGTAGCCTA--------ATCTATAGAAGTTT-CTGGTTCACTATAATACTTTATT---AAGGCTTTGACTTTTGTGCGGTTCTTGTGTTCATTTACAGGTGCATTTTAAGAAGTGGCTGTTTTATCCCAA--------TAAATAAATAA-ATTCAAGAAATGGCTCTTAGCACTAAGCTTGATACATAGTTAT-----------------------------------GTAC----------------TTATGTGTCATTCTCAACAGACAATTATTGACTGCA--------TAT------CTTTTTCA----------------ACAGATGCATAAGTCAAAGGTCGAA-GAC-AA-----TACACCCTAAATTAG----------------------------------GTACAATTCT---TAAGCATCTGTAAAGTT-TTAAGATCATAATAGGTAATTCAGCATTCGG-AACTACAAGTTTGAGGGCAGCTGGATGGCTCATACCATTGCTTGTAAAAGACAATTGCTGATGTTTC---GCTTAATCAAAATTTTGT-TCTATCTCTCTTGTCCCCTGTCTAATTTTGTATCTTCTGATTAAATGTGTTGCATTCTTTT-CTGTTCTGACAGAGGATTACTGAACAAGCTGGTGTTGTTCTCTCACTTGATCCAAAACCAATAGAGGTA---CTAAAATGGTGTAGTTGACAGTATTTCTTCTCGTGTGTTAATTATACTAATTGTTTTGATTTTTACCCTGGCAGGGTGACTGGAATGGTGCAGGATGCCACACCAACTACAGGTTTCTGGACTTGCCATTGTCATGAATCATCACTGCATGTGTCTTTTTGGGTTCCTATATTACTAAGTTGATGAAATATTATTTGCTTTTTAGTACAAAGAGC Sophora_davidii_H9 TGGGGAGGTTAT-GCCTGGGCAGGTATATTTCTCGCAGTCTCGGCATTCTCTTCTTTCAAGGTTTATGAATGTATGACCT-------CTTGTTTTTCTCATTATTTCTTCTACAAATACTGCAGTGGGAGTATCAAGTTGGTCCTAGTGTAGGTATTGAAGCTGGTGATCATATCTGGGCTTCTAGATACATCCTCGAGGTAATTCATTTTACCTACTTTTGGTTTATTTATAAACTGTATTACTGTT---GGACCATTTGATACAGAAAGGTTAACCTTTTCA---------------AA-ACATGTCATGGTAGCCTA--------ATCTATAGAAGTTT-CTGGTTCACTATAATACTTTATT---AAGGCTTTGACTTTTGTGCGGTTCTTGTGTTCATTTACAGGTGCATTTTAAGAAGTGGCTGTTTTATCCCAA--------TAAATAAATAA-ATTCAAGAAATGGCTCTTAGCACTAAGCTTGATACATAGTTAT-----------------------------------GTAC----------------TTATGTGTCATTCTCAACAGACAATTATTGACTGCA--------TAT------CTTTTTTA----------------ACAGATGCATAAGTCAAAGGTCGAA-GAC-AA-----TACACCCTAAATTAG----------------------------------GTACAATTCT---TAAGCATCTGTAAAGTT-TTAAGATCATAATAGGTAATTCAGCATTCGG-AACTACAAGTTTGAGGGCAGCTGGATGGCTCATACCATTGCTTGTAAAAGACAATTGCTGATGTTTC---GCTTAATCAAAATTTTGT-TCTATCTCTCTTGTCCCCTGTCTAATTTTGTATCTTCTGATTAAATGTGTTGCATTTTTTT-CTGTTCTGACAGAGGATTACTGAACAAGCTGGTGTTGTTCTCTCACTTGATCCAAAACCAATAGAGGTA---CTAAAATGGTGTAGTTGACAGTATTTCTTCTCGTGTGTTAATTATACTAATTGTTTTGATTTTTACCCTGGCAGGGTGACTGGAATGGTGCAGGATGCCACACCAACTACAGGTTTCTGGACTTGCCATTGTCATGAATCATCACTGCATGTGTCTTTTTGGGTTCCTATATTACTAAGTTGATGAAATATTATTTGCTTTTTAGTACAAAGAGC Sophora_flavescens GGCAGATGTTATAGCCTGGGCAGGTACA--CCTC------TCGGGATTCCCTTCTTTTAAGGCTTATGAATGTATGAACT-------CTTGTTTT-CTCATTATTTCTTCTATGAATATTGCAGTGGGAGTATCAAGTTGGTCCTAGTGTAGGTATTGAAGCTGGTGATCATATCTGGGCTTCTAGATACATCCTTGAGGTAATTCATTTTACCTACTTTTGGTTTATTTATATACTGTATTACTGTT---GGACCATTTGATACAGAAAGGTTAACCTTTTCAAAGAATCAGTTATC-AAAACATGTCATGGTAGCCTATAGCCCTATACTATATCGGTTT-CTGGTTCAATATAATACTTTATTTTGGAGGCTTTGGCTTTTGTGTGGTTCTTGTGTTCATTTACAGGTGCATTTTAAGAAGTGGCTGTTTTATCCCCAAAAA---AATTTTAAATAA-ATGCAAGAAGTGGCTCTTAGCACTAAGCTTGATACATTGTTATTTGCATGTGTTTACCTGAGAACTTTTATCCAATTTGAACCATTTGCTGATAG---TTATGTGTCATTCTCAACAGACAATTGTTGTCTGCA--------TATATTTTTCTTTTTTACTTTTCATCTTCTTCCACAGATGCATAAGTCAAAGGTTGAACGTCGAAGACAATACACCCTAAATTAGTTTTTTTTTTT----------------------AATACAATTCT---TAAGCATCTGTAAAGTT-TTAAGATCATAAAAGGTAATTCAGCATTCGG-AACTACAAGTTTGAGGGCAGGTGAAAGGCTCATGCCATTGCTTGTAAAAGACAATTGCTGATATTCTC--GTTTAATCAAAATTTTGT-TCTAGTTCTCTTGTCCCTTATCTAATTTTTTATCTTCTGATTAAATATGTTACATTTTTTTTCTGTTCTGACAGAGAATTACTGAACAAGCTGGTGTTGTTCTCTCACTTGATCCAAAACCAATAGAGGTA---CTAAAATGGTGTAGTTGACAGTATTTCTCCTCGTGTGTTAATTATACTAATTGTTTTGGTTTTTGCCCTGGCAGGGTGACTGGAATGGTGCAGGATGCCACACCAACTACAGGTTTCTGGACTTGCCTTTGTCATGAATCATCACTGCATGTGTCTTTTTAAGTTCCTATATTACTAAGTTGATGAAATATCATTTGCTTTTTAGTACAAAGAGC Sophora_japonica -GAGGAGGTTAT-GCCTGGGCAGGTTC--TTCTCA------CACCATTCCTTTTTTTTAATGCTTATGAATATTTGAACTC------ATAGTTTTTCTCACTATTTCTTCCATGAATATTGCAGTGGGAGTATCAAGTTGGTCCTAGTGCAGGTATTGAAGCTGGTGATCATATCTGGTGTTCAAGGTACGTC-TTGAGGTAATTCATTGTATCTACTTTTCGTTTATACAC--------TTACCTTT---GGAGCATTTGATACAGAAAGGTTCAGCTTTTAAAAGAATCAGTTA---TTAACATGCTATGGCAGCTTA-------ATTCTTTTGAGGTTT-CTGGTTCAGTATTATGTCTTATTT--AAGGATTTGGTTTTTGTGTAGTTCTT--GTTAATGTGCAGGTGCATTTTAAGAAGT-GTCGGTTTGTACTAA-------------------GCTT---GATATG----TTG---------TT-AT---CTG-----T--GTGTGTTTACCTGAGAA-TTTTATCCAATGTGCACCATTTGCTTGAAG--TATTAGTGTAATTTTCAACGGACAATTATTGTCTGTATCTCT---TCTTTTTAACTCTTTCC-------TCTTCTTCCACAGGTGGATAAGTCAAAGGTGGAA-CAT-AA-----TACACCCTAAATTAGAACTTTTTTGTGTA-------------TTTTTTAATACAATTCT---TAAGTATCTTGAAAGTT-TTAAGATCATTAAAGGTAATTCAGCATTCTT-TAGAACAAGTGCAAGGTCAGGTGAAAGGCTGGTGCCTTTTCTTGTAACCGAAAATTGTTGACTATCTT--GTGTAAACAAAATTTCGTGTTTGTTCTTCTTGTTACTTATTCAATTTTGTATCTTCTGATTAAGAATGTTGCATTTTCCT-CTGTTCTGACAGAGAATCACTGAACAAGCTGGCGTTGTTCTCTCACTTGATCCGAAACCAATAGAGGTACTATAATAATGCTATAATTGCAAATATTTCTTATTCAATGATAATTATACTAAATTTTTTGCTTTTTGCCCTGACAGGGTGACTGGAATGGTGCAGGATGCCACACCAATTACAGGTATTTGGACTTGCCTTTATCATGAATCACGGTAGCATGTGTCTTAGTAACTTCCTGAATTACTGAGTTGATGGGCTATCATTTGCTTTTTAGTACGAAGAGC Sophora_moorcroftiana_ --------------------------TAGT-CTCGC-CAGTTGCCATTCCCTTCTTTTAAGGTTTATGAATGTATGAACT-------CTTGTTTTTCTCGTTATTTCTTCTACAAATATTGCAGTGGGAGTATCAAGTTGGTCCTAGTGTAGGTATTGAAGCTGGTGATCATATCTGGGCTTCTAGATACATCCTTGAGGTGATTCATTTTACCTACTTTTGGTTTATTTATATACTGTATTACTGTTCTTTGATCATTTGATACAGAAATGTTAACCTTTTCAAAGAATCAGTTACCCAAAACATGTCATGGTAGCATA--------ATCTATAGAGGTTT-CTGGTTCAATATAATAATTTATTT--AAGGCTTTGGCTTTTGTGTGGTTCTTCTGTTCATTTACAGGTCCATTTTAAGAAGTTGCTGTTCTATCCCAAAAAA----TAAATAAATAA-ATTCAAGAAGTGGCTTTTGGCACTAAGCTTGATACATTGTTATTTGCGTGTCTTTACCTGAGCACTTTTATTCAATTTGAGCCATTTGCTGATAA---CT--GTGTCATTCTCAATAGACAGTTATTGTCTGCAACTCTGCATATCTTTTTCCTTTTAAGTTTTCATCTTCTTCCGCAGATGCATAAGTCAAAGGTCGAA-GAC-AA-----TACACCCTAAATTAGTTTATTTATTTATTTATTTATTTTTATTTTTTTTGTACAATTCT---TAAGCATATGTAAAGTT-TTAAGATCATAAAAGGTAACTCAGCATTCGG-AACTACAAGTTTGAGGGCAGGTGGAAGGCTCATGCCATTGCTTGTAGAAGACAATTACTGACGTTTTC--GCTTAATCAAAATTTTGT-TATAGCTCTCTTGTCCCCTATCTAATTTTGTATCTTCTGATTAAATGTGTTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Sophora_tomentosa TGGGGAGGTTAT-GCCTGGGCAGGTATATTTCTCACAGTCTCGCCATTCCCTTCTTTTAAGGTTTATGAATGTATGAACT-------CTTGTTTTTCTCATTATTTCTGCTAAGAATATTGCAGTGGGAGTATCAAGTTGGTACTAGTGTAGGTATTGAAGCTGGTGATCATATCTGGGCTTCTAGATACATCCTTGAGGTATTTCATTTTACCTACTTTTGGTTTATTTATATACTGTATTACTGTT---GGATCATTTGATACAAAAAGGTTAGCCTTTTCAAAGAATCGGTTATT-AAAACATGTCATGGTAGCCTA--------ATCCATAGAGGATT-CTGGTTCAATATAATTCTTTATTT--AAGGCTTTGACTTTTATGTGGTTCTTGGGTTCATTTACAGGTGCATTTTAAGAAGTGGCCGTTTTATCCCAAAAAATAAATAAATGAATAT-ATTCAAGAAGTGGCTTTTAGCACTAAGCTTGATACATTGTTATTTGCGTGTGTTTACCTGAGAATTTTCATCCAATTTGAACCATTTGCTGATAG---TTATGTGTCATTCTCAGCATATCCTT-TTCTTTTTA--------ACTGTTCGTCTTCTTCC----------------ACAGATGCATACGTCAAAGGTTGAA-GAC-AG-----TACACCTGAAATTAGATTTTTTTTTT---------T--------T---AATACAATTCT---GAAGCATCTGTAAAGTT-TTAAGATCATAAAAAGTAATTCAGTGTTAGG-AACTACAAGTATGAGGGAAGGTTAAAGGCTCATGCCATTGCTTGTCAAAGACAAATGCTGATATTCTC--GTTTAATCAAAATTTTGT-TCTAGTTCTCTTGTCCCTTATCTAATTTTTTTTATCTT---------TGTTGCATTTTTTTCCTGTTCTGACAGAGAATTACTGAACAAGCTGGTGTTGTTCTCTCACTTGATCCAAAACCAATAGAGGTA---CTAAAATGGTGTAGTTGACAGTATTTCTTCTCGTGTGTTAATTATACTAATTGTTTTGGTTTTTTCCCTGGCAGGGTGACTGGAATGGTGCAGGATGCCACACCAACTACAGGTTTCTGGACTTGCCTTTGTCATGAATCATCACTGCATGTGTCTTTCTAAGTTCCTATATTACTAAGTTGATGAAATATCATTTGCTTTTTAGTACAAAGAGC Sophora_tonkinensis_ CTGGGGAGGTTAGGCCTGGGCAGGTATATTTCTCGCACTCTCACCATTCCTTTCTTTTAAGGTTTATGAATGTATGAACTATGAACTCTTTTTTTTCTCATTATTTCTTCTACGAGTATTGCAGTGGGAGTATCAAGTTGGTCCTAGTGTAGGTATTGAAGCTGGTGATCATACCTGGGCTTCTAGATACATCCTTGAGGTAATTCATTTTAC-TACTTTTGGTTTATTTATATACTGTATTACTGTT---GGACCATTCGATACAGAAAGGTTAACCTTTTCAAAAAATCAGTTATC-AAAACATGTCATGGTAGCCTA--------ATCTATAGAGGTTT-CTGGTTCAATGTAATACTTTA------AGGCTTTGGCTTTTGTGTGGTTCTTGTGTTCATTTACAGGTGCATTTTAAG---TGGCTGTTTTATCCCAAAAAA----TAAATAAATAA-ATTCAAGAAGTGGCTCTTAGCACTAAGCTTGATGCACTGTTATTTGCGTGTGTTGACCTGAGAACTTTTATCCAATTTGAACCATTTGCTGATGG---TTATGTGTCATTCTCAACAGACATTTATTGTCTGCA--------TATCTTTCTATTTTTAACTTTTCATCTTCTTGCACAAATGCACAAGTCAAAGGTCGAA-GAG-AA-----GACACCCAAAATTAA--AATTTGTTT-----------TTGGTTGATTTTATACAATTCT---TAAGCATCTCTAAAGTT-TTAAGATCATAAAAGGTAATTCAGCATTCGG-AACTACAAGTTTGAGGGCAAGTGGAAGGCTCATGCCATT----G{CT}AAAAGACAATTTCTGATGTTCTC--GTTCAATCAAAATTTTGT-TCTAGTTCTCTTGTCCCTTATCTAATTTTGTATCTTCTGATTAAATATGTTGCATTTTTT--CTGTTCTGACAGAGAATTACTGAACAAGCTGGCGTTGTTCTCTCACTTGATCCAAAACCAATAGAGGTA---CTAAAATGGTGTAGTTGACAGTATTTCTTCTCGTGTGTTAATTATACTAATTGTTTTGGTTTTTGCCCTGGCAGGGTGACTGGAATGGTGCAGGATGCCACACCAACTACAGGT{CT}TCTGAACTTGCCTTCATTATGAATCATGACTGCATGTGTCTTGTTGACTTCCTGTATTACT{AG}AGTTGATGAAATATCATTTGCTTTTTAGTACAAAGAGC Trifolium_repens CGGGGAGGTTAT-GCCTGGGCAGGTACATCTCTTG---------CATTTCCCTTTGTTAAGTCCAATGAATGTCACATCA----------GTTTTTCTCATTATTTCTTCTTTACGCATTGCAGTGGGAGTATCAAGTTGGTCCTAGTGTAGGTATTGAGGCTGGTGATCATATCTGGGCATCAAGGTACATCCTCGAGGTAATTCACTTTGCCTACCTTT-----ACACACA--------CACTGTT---GGACTATTTGACACAGAAAGGTTAAACTCTTGAAAGAACCAATTCCT-AAAGAATGTCTTAGCTCAGTAT--CTTAATTCTGTGGAGGTTTATTGGTTCAATATAATGTCA-------AACGTTTTGGCTTTTGTGTGGTTCTT--GTTCATGTTCAGGTGAATTTTAAGAAGTGACT-CTTTGCGCGAGGCTT--GATACGTTGTCATTATTTGTGTGGTTAC-CTGAGAATTGCTCCTTGTGC-TTGTAGT------------------------------------TAT--------------------TCATTATTTTCAATGGACAATTATTGCCCATA--------AAT------CTTCTTTT----------------AGAGGCAGATAAGT--AAGGTCAAA-----GA------AAACCCTGAATTAT---------------------------------TATATATTTCCATCTATATTTTTGTACAATTCTTTAGATCTCTGAAGTT--TTTAGCATTCTTTAAGAATAAGTTTGATGGTAGGTGAAGGGTTCATGCCACTGCTTGTAACTGAAAATTATTGATTGTCCCCCCTGTAAACAATACTTTGTGCTTA-TTCTCTTGTCCCTTGTCCAATTTTGTATCTTCTAATTAAA-ATATTACATTTTGGT-ATGACCTGACAGAGAATTACTGAACAAGCTGGTGTTGTGCTCTCTCTTGATCCAAAACCAATAGAGGTA---CCGTAATGCTCTAATTGGCAGTATCAATTATCCTATCTTAATTGTACTAATTGTTTTGGTGAAC------ATAGGGTGACTGGAATGGTGCAGGATGCCACACCAATTACAGGTTTTTGCCTATGCTTCT--------------TTGCATGTGTCTTTTTTTTTTACTAAATTACTAAGTAAAACA-----CATTTGCCTGTTAGTACAAAGAGC ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M16084] TITLE cpDNA_dataset_for_monophyly_assessment; LINK TAXA = Taxa3; DIMENSIONS NCHAR=1199; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Phaseolus_coccineus_ TCGAAATCATAATAACCAATTCTTTAGTCAATCGTCGAGATTGAAAGAATCCATT--AAAG------TGCAATATTTATTTAGTACATT--------TCTTTGAC------TAAACATTTAG--TATAAATTCATAATT--ATAAGTAAAT--TTGAAATTTGGATTTATTCTAATATCAAAA----TATATT------------------AATATATATATAGAAAATAGAGAAATATATGATAGAT-------------AGAATATAGA-ATGTT-----------TTGA---TTTCTAGTGGAATGGA---ATGGGTTT---------------TT------------------CGTAGTTTACATGCAA-------------ATTAAAAAATAGCCC---TGTTGAAACTATAACTATGT-AGTT---CTGACTTCAATCCAGTA--ATGAAAAAGAACATTTTTAT----TGTAGTTGCTTATGACTCATTTTTTAGTTATTTCATTTTATGACTCTAAAGAAATACATTTC---TATTTTTGGAATGAAAGCAAATTATA--GTTAATTAATATAT--ATATC-TAAAATTTAACACTACATTCAAAAAAATG----AAAAAATGAGATTAGATATATA----ATCTAGT--CTTGGCTA---CATTCGCCCT------ATACT---------ATGTCTAAA----TGACATA-ACTT-----TTTAGACCT---TTT---CATTATCATTTTTTTTTTC-----------TTCATTTTACATTATGAAGTCATATGTA--TTACAAAAAGATCA----AAAAGATT---------GATGAG---------AAAAATGCATAAATGAAAG-------ATTAC----TAAATAAAAAAAAAGA--AAACTCAAAATTTACAAATTAATTTAGTTGACATGAAAGAAGGGTGCTCGATG-CTAAAGAA-TATGGAAGTTAATAAAAAATTGAT----TAATTTCTGTATA-------TGTATACAGAAAAAGACTA-----------CTAACAAAAAGTAAAGGGGAGAGTAATATC-AACGATA--TTATTCCCTTACCCCCTTTACTTT---CA--AAAA----------CTCGTATCCTTCTTT----------AAAACCAAAATATT--------ATCCATTT----ATAG Piptanthus_nepalensis_ TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAATTAAAAAA-----TTGTAATATTTTTTAGT-----CA-------ACGTTAA----AA--TAAGAATTCTATTAT-----ATAAATT--ATAATATA----TTATAATTTATATAATAGAATTCTTATTTA---TTATATTTAATATTTATTATATTTAATATTTATTATATTTAATAT-TTATTATATTTAATAT-------------TTATTATATTTAATA------------TTTATTATATTTAATATTTATTA-TATTTAATTTATTAGAAATATTT--AT------------------TAGAATAAATA------------------ATTATAGACAATTA-------TA-TATTAA-----------ATATTCTATTGTATATT---------AGAAAATA-TTCTTTGAA----TTCAGCTATTTCAGATT-ATTCCAACTTT-TTCTATTTG----TTACACAAAAAAACTTTTT--GAATTCCCCG--TAGAAATAGATTGCGCTAAAGAAAAAGATTTCAATGCTGTCCAATACCCCCCTTTTTTCCAAAAAGTTTTCCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTAC---ATCCGCCCCTAC----TACTAT---------GTAAAAA----TTACCTAGACTTCAA--TTTCAACCC---TTT---CGTTATCATTCTTTTTTCTT-----------------------------------------ATAAGATAAAATA-----AACCA-----GA----AATGGA----------AACAT---TTA--------------------------------------------------------AATATAA-----------------------------------------------TATAAATAAA------------GAAGTAA------------------------AA---------------------------GTAAAG----GAGCAATA---GAAAAAACT-CTG--TTGCTCC---TTTACTTTT--AA--AAA-----------CTCGTATACTTTAA-----------GACCTA--AATATT--------ATCCATTT----AGAG Salweenia_wardii TCGAAATCATAATAACGGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAATTTAAAAA------TGTAATATTTTTTAGT-----CA-------ACATTAA---AAT-----GATA-----AAT-----AAGAATT--CTA---------TTATAATTTA------------------------TATAAT------------------AGAATTCTTAT----------TTATTTT--------------------------TA--TTTA-------------------------TGAGAATAAA-------A-AATTTA-----------------------------------ATAATAAATA------------------ATTATAGACAATT-------CTA-TATGAA-----------ATATTCTATTGTATATT---------AGAAAATA-TTCTTTGAA----TCCAGTTAATTCAGATT-ATTCCAACTTT-CTCTATTTG----TTACACAAAAAAACTTTTT--GAATTCCCCG--TAGAAATAGATTGCGCTAAAGAAAAAGATTTCAATGCTGTCCAATACCCCCCTTTTTTCCAAAAAGTTTTCCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTAC---ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TGACCTAGACTTCAA--TTTCAACCC---TTT---CGTTATCATTCTTTTTCTTCTAA-------------------------------------GATAAGATAAAATA-----AACAAAAAATGA----AATGGA----------AACAT---TCATTTTTTG------TTTATC----CTTTTTGGAATAC-ATATGACTTCGCAAGCAGCAATGTCA------------AAAATAAA---------------GACT--------TCTAAATAAA------------GAAGTAT----------A----CGAGTTTTTAAAG-------------------------GTAAAG----GAGCAATA---GAAACT----CTA-------CC---TTT--------AA--AAA-----------CTCGTATACTTTAACTTTAAGACCCAAACCA--AATATT--------ATCCATTT----ATAA Sophora_davidii_C1 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATT------------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATTTTATT--------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTC-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTCA-----------ATATTCTATTGTATATTAGATA--TTCGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTATCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTT-----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAG-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C10 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTT-----------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTT-----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT-----------------GAAGTATAAA--------------------------GTAAAG----GAGCAATA---GAA-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C11 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTT-----------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTTG----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT-----------------GAAGTATAAA--------------------------GTAAAG----GAGCAATA---GAA-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C12 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTT-----------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTTTT---------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAA-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C13 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTT-----------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATATAT----------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTTT----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAA-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C14 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTT-----------------ATA---TTATAATTATAAATTATAGTATAATAGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAATAAATAA----AATGGA----------AACAT---TTTTTTT----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAA-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C15 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTT-----------------ATA---TTATAATTATAAATTATAGTATAATAGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAATAAATAA----AATGGA----------AACAT---TTTTTTT----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAG-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C16 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTT-----------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTTT----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAG-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C17 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTT-----------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTTG----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAG-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C18 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---AATGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTT-----------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAATTCTATATTAAATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCTTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTTT----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAG-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C19 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---AATGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTT-----------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAATTCTATATTAAATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCTTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTTG----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT-----------------GAAGTATAAA--------------------------GTAAAG----GAGCAATA---GAA-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C2 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATT------------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATTTTATT--------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTC-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTCA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTATCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTT-----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAG-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C20 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTG-----------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTTG----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT-----------------GAAGTATAAA--------------------------GTAAAG----GAGCAATA---GAA-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C21 TTGAAATCATAATAACCGATT-TTGAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTT-----------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTTG----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT-----------------GAAGTATAAA--------------------------GTAAAG----GAGCAATA---GAA-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C22 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTT-----------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAACT----------G-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTTG----------ATC-------TTTTTGGAATCC-ATATGACTTCGAAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAA-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C3 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATT------------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATTTTATT--------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTC-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTCA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTATCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AAAAT---TTTTTT-----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAG-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C4 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATT-ATAT---------TATTATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATTTTATT--------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTC-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTCA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTATCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTT-----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAG-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C5 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATT------------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATTTTATT--------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTC-TAAA-AATTTAT-----ATAT------------------------AATAATAAATATAAATA------------ATTATAGACAATTAA---TTCTA-TATTCA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTATCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------GA-----AATAA-----------AATGGA----------AACAT---TTTTTT-----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAG-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C6 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATT------------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTC-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTCA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTATCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------GA-----AATAA-----------AATGGA----------AACAT---TTTTTT-----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAA-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C7 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTT-----------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTT-----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAA-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C8 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTT-----------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTTT----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAA-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_davidii_C9 TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAAA---A-TGGAATATTTTTTAGT-----CA-------ACATAAA----AA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAAATTT-----------------ATA---TTATAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAAA-AATTTAT-----ATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTA----ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTT-----------------------------------------------------------TA-----AATAA-----------AATGGA----------AACAT---TTTTTTG----------ATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAAA-------------GACTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAA-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_flavescens TCGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAATTAAAAAAA---AATGTAATATTTTTTAGTTA-GTCA-------ACATTAA----GA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAATTT------------------A--------TAAT------------------AGAATTCTTAT----------TTATTTTATT-------------------AAATTTTATTTATTAG-----------TTTA------TTAGAATAAATTA-TAAA-AATTTAA-----ATAATT--AT------------------TAATATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGAATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCCCG--TAGAAATAGATTGCGCTAAAGAAAAAGATTTCAATGCTGTCCAATACCCCCCTTTTTTCCAAAAAGTTTTCCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCTAC---ATCCGCCCCTAT-----ACTATACT----ATGTAAAAA----TTACTTAGACTTCAA--TTTCAACCC---TTTTTTCGTTATCATTCTTTTTTATCT---------------------------------------TCTAAGATAAAATA-----AACAAAAAATGA----AATGGA----------AACATTCTTTTTTTTG-----T-TTATCC-----TTTTTTGGAATAC-ATATGACTTCGCAAGC---AATGTAA------------CAAAAAAAA--------------GACTT-CT-----AAAAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAG-------CTA--TCGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_moorcroftiana_ TTGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAAT--AAAAA----AATGGAATATTTTTTAGTCAACATA-------AAAATAATAATAA-ATAAGAATT---CTAT----TATAAATT--ATATTA----TAATAGAATTCTTA--------------TTTA---TTTTATT------------------AAAATTCTTATTTAT------TTATTTTATT-------------------AAACTTTATTTATTAG-----------TTTAAGTTTATTAGAATAAATTA-TAA-AAATTTA-----TATAT------------------------AATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATCTTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGGATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCTCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCCTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGGTAC---CTCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTCGACTTCAA--TTTCAACCC---GTTTTTCGTTATCATTCTTT-----------------------------------------------------------A-----AATAA-----------AATGGA----------AACAT---TTTTTTT---------TATC-------TTTTTGGAATCC-ATATGACTTCGCAAGC---AATGTAA------------AAAAAAAAA--------------A---A-AGAC-TTCTAAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAG-------CTA--TTGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATCCTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Sophora_prazeri_ TCGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAAA---AATGTAATATTTTTTAGTTAACTTTTAGTCA-ACATTAA----GA--TAATAATAA---AATT----AAGA-TA--ATAAA-------T---------------------------------------A-----------------AGAATTCTTAT----------TTATT-----------ATC------TTAATTTTTATTTA--TTAG-----------TTTATT---------ATAAAAAT-TAAAATA--TAA-AAA-TAAA-----------------------TAATTATAGATAATTA--------------ATTCTAT---ATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTCGAAAATA-TTCTTTGAA----TCCAGTTAATTCGAATT-ATTCCAACTTT-CTATATTTC----TTACACAAAAAGACTTTTT--GAATTCCCCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCTCTCTTTTTCCAAAAAGTTTTCCGAATTCTTTTTTTTGATATAAA-AGTACGTTTTTTCT-GGCTC-----TCCGCCCCTAT-----ACTAT---------GTAAAAA----TTACCTAGACTTCAA--TTTCAACCC---CTTTTTCGTTATCATTCTTTTTTAT---------------------------------------------------------CT----------TCTAAGATA-GGA------------------------------------------------------------------T--AA------AATAAA------------CAAAAAAAA-----------------CTT-CT-------AAAAAAA------------GAAGTAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAG-------CTA--TTGCTCC---TTTACTTTTTTTTTTAAAA----------CTTGTATACTTTAA-----------AACCCC--GATATTATCTATTTATCCATTT----ATAG Sophora_tomentosa TCGAAATCATAATAACCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAATTAAAAAAA--AAATGTAATATTTTTTAGT-TAGTCA-------ACATAA---------TAA-AATA----AAT-----AAGAAATTTCTA---------TTATAATTT------------------ATA-------AATA-----------------AGAATTCTTAT----------TTATTTTTTTTTTTTTTTTTTATTTA--------TTATTTATAAAAATTGAAATA-ATTATTAATATAAAAATAAATT---AAAAAATTTA------ATATT-----------------------AATAATAATAGACAATTA-----------ATTCTAT---ATTAAATATTCTACTGTATA-----------TTAGCTATTTGTATATTAGATA--TTAGAAAAGA-TTCTTTGAA----TCTAGTTAATTCGAATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCCTG--TAGAAATAGATTGTGCTAATGAAAAAGATTTCAATGCTGTCCAATATCCCCCCTTTTCC-AAAAAGTT--CCGA-CTCTTTTA------------------------CTTGGCTAC---ATCCGCCCCTAT-----ACTAT---------GTAAAAA----TTATTTAGACTTCAA--TTTCAGCCC----TTTTTCGTTATCATTCGTTTTTAT------------------CT------TCTAAGATA-GG--------------ATAA----AATAAACAAAAAATGAAATGGA----------AACATTCTTTTTTTT---------TATCTT-----TTTTTGGAATAC-ATATGACTTCGCAAGC---AATGTAA-----------CAAAAAAAAAA-------------GAATT-CT-------AAAATAA-----------AGAAGTAT-----------------GAAGTATAAA--------------------------GTAAAG----GAGCAATA---GAG-------CTA--TCGCTCC---TTTACTTTTTTA---AAAA----------ATCGTATACTTTAA-----------AAACCC--GATATT--------ATCCATTT----ATAG Sophora_tonkinensis_ TCGAAATCATAATAATCGATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAATTAAAAAA----AATGTAATATTTTTTAGT-----CA-------ACATTAA----GA--TAATAATA----AAT-----AAGAATT--CTA---------TTATAATTTG--------------------------TAAT------------------AGAATTCTTAT----------TTATT------------------------AAATTTTATTTATTAG-----------TTTATT------AGAATAAATT-ATAAAAA-TTTAAATAA-TTATT-----AATATAAATAAAAAATTTAATAATAAATA------------------ATTATAGACAATTAA---TTCTA-TATTAA-----------ATATTCTATTGTATATTAGATA--TTAGAAAATA-TTCTTTGAA----TCCAGTTAATTCGAATT-ATTCCAACTTT-CTCTATTTC----TTACACAAAAAAACTTTTT--GAATTCCCCG--TAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAAGTTTTCCGAATTCTTTTTTTTGATATAGA-AGTACGTTTTTTCTTGGCT-----CTCCGCCC-TAT-----ACTAT---------GTAAAAA----TTACCTAGACTTCAA--TTTCAACCC---TTTTTTCGTTATCATTCTTTTTTAT-------------------CTTCTAAGATAGGATA-AA---ATAAACAAA----A-----AATGA-----------AATGGA----------AACATTCTTTTTTTT---------TATC-------TTTTTGGAATAC-ATATGACTTCGAAAGC---AATGTAACAAAAAA----AAAAAAAAAAA-----------AAGAATTTCT-------AAAAAAA------------GAAATAT------------------------AAA--------------------------GTAAAG----GAGCAATA---GAG-------CTA--TCGCTCC---TTTACTTTTTTAA--AAA-----------CTCGTATACTTTAA-----------AACCCC--GATATT--------ATCCATTT----ATAG Thermopsis_alpina TTGAAATCATAATAACCTATT-TTTAGTCAATCGTCGAGATTGAAAGAATCAATTTAAAAA-----TTGTAATATTTTTTAGT-----CA-------ACGTTAA--------------------AAT-----AAGAATT--CTA---------TTATAATTTA------------------------TATAAT------------------AGAATTCTTAT----------TTATTTTT-----------------------ATTATATTTAAT-----------------------TTATTAGAAAT---------ATTTAT------T---------------------------AGAATAAATA------------------ATTATAGACAATT-------CTA-TATTAAATAAA------ATATTCTATTGTATATT---------AGAAAATA-TTCTTTGAA----TTCAGCTATTTCAGATT-ATTCCAACTTT-CTCTATTTG----TTACACAAAAAAACTTTTT--GAATTCCCCG--TAGAAATAGATTGCGCTAAAGAAAAAGATTTCAATGCTGTCCAATACCCCCCTTTTTTCCAAAAAGTTTTCCGA---------------------------------CTTGGCTAC---ATCCGCCCCTAC----TACTAT---------GTAAAAA----TTACCTAGACTTCAA--TTTCAACCC---TTT---CGTTATCATTCTTTTTTCTT-----------------------------------------ATAAGATAAAATA-----AACCA-----GA----AATGGA----------AACAT---TCATTTTTTT-------CT-------CTTTTTGGAATAC-ATATGACTTCGCAAGC---AATATAA------------AAAATAAAGA-------------CTTCT-AAA---TATAAATAAA------------GAAGTAA------------------------AA---------------------------GTAAAG----GAGCAATA---GAAAAAACT-CTG--TTGCTCC---TTTACTTTT--TA--AAA-----------CTCGTATACTTTAA-----------GACCTA--AATATT--------ATCCATTT----AGAG Trifolium_repens_ TCGAAAGCATAATAACCAAAT-TGGAGTCAATTGTCGAGATTCAAAGAATCAATTCA--------AATACAATATTTGTTTACTAA-----------ACATTCA-------ATAA-AATAA---TTTT---AAAGAATT--CTA---------TTAGAATCTAT-------------TATA--------TAATG-----------------ATAATGTAAATTT--------CGAATCTCTT-------------------ATA-TATAT------------------------------AATGTAAATA--TCCTAAATTCA---------------T------------------AA--ATGAATATTCT--------------ATTAGATATCAA------TTTTA-TATGAA----------------TCTTTTTGTAT--------TTCAAAAAGA-TTCGTTGAA----TCAAGTTAATTGAAATT-ATTCTAACGTT--TGTATTTG----TTACAGAAAAAG-CTTTTA--GAATTCCCCG--TAAAAATAGATTGCGCTAATGAAAAAGCTTTTAATGCTGTAAAATATCCCTTCTTTTTCCATAAAGTGTTCCGAATAATTTTTTTTGAAATAGA-AGTACGTTTT--CTTGGCTAC---ATCCGCCCTTCT--TATACT---------ATCTAAAAAGGATCTATCTATATCTCAA--ATTCTACCC---TTT---CAATATCCTTTTTTTCTTTC------------------------------------GA----AAAAAGGAA--------AAAAA-----------GATAAG---------------------------------------------------GAATCATGAAAGAAATCAAAAAC------GT-A-----------TGTATAA------------------A----------TCTCAAAAAA------------AGATTACTAATC------------------CAAT--------------------------ATAAAG----GAGCAATATT-AACAAAGTTGATA--TTGCTCC---TTTATTTTCAAAC-AAAAA----------CTCGTCTACTTTTTTAAATT-----AAGATCAAAATTTT--------ATCCATTA----ACAG ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M16452] TITLE 'cpDNA haplotype matrix for beast analysis (without repetitive regions)'; LINK TAXA = Taxa4; DIMENSIONS NCHAR=792; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Sophora_davidii_C1 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAATGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATT---------ATATTATAAT------------------AGAATTCTTATTTATTTTATTAAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTCTAAAAATTTATATATAATAATAAATAATTATAGACAATTAATTCTATATTCAATATTCTATTGTATATTAGATATTCGAAAATA-TTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTATCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAAAATGGAAACATTTTTTT--ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTATAAAGTAAAGGAGCAATAGAGCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C12 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAATGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATTT--------ATATTATAAT------------------AGAATTCTTATTTATTTTATTAAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTATAAAAATTTATATATAATAATAAATAATTATAGACAATTAATTCTATATTAAATATTCTATTGTATATTAGATATTAGAAAATA-TTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAAAATGGAAACATTTTTTTTTATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTATAAAGTAAAGGAGCAATAGAACTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C14 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAATGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATTT--------ATATTATAATTATAAATTATAGTATAATAGAATTCTTATTTATTTTATTAAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTATAAAAATTTATATATAATAATAAATAATTATAGACAATTAATTCTATATTAAATATTCTATTGTATATTAGATATTAGAAAATA-TTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAAAATGGAAACATTTTTTTT-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTATAAAGTAAAGGAGCAATAGAACTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C15 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAATGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATTT--------ATATTATAATTATAAATTATAGTATAATAGAATTCTTATTTATTTTATTAAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTATAAAAATTTATATATAATAATAAATAATTATAGACAATTAATTCTATATTAAATATTCTATTGTATATTAGATATTAGAAAATA-TTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAAAATGGAAACATTTTTTTT-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTATAAAGTAAAGGAGCAATAGAGCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C16 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAATGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATTT--------ATATTATAAT------------------AGAATTCTTATTTATTTTATTAAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTATAAAAATTTATATATAATAATAAATAATTATAGACAATTAATTCTATATTAAATATTCTATTGTATATTAGATATTAGAAAATA-TTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAAAATGGAAACATTTTTTTT-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTATAAAGTAAAGGAGCAATAGAGCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C17 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAATGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATTT--------ATATTATAAT------------------AGAATTCTTATTTATTTTATTAAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTATAAAAATTTATATATAATAATAAATAATTATAGACAATTAATTCTATATTAAATATTCTATTGTATATTAGATATTAGAAAATA-TTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAAAATGGAAACATTTTTTTG-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTATAAAGTAAAGGAGCAATAGAGCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C18 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAATGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATTT--------ATATTATAAT------------------AGAATTCTTATTTATTTTATTAAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTATAAAAATTTATATATAATAATAAATAATTATAGACAATTAATTCTATATTAAATATTCTATTGTATATTAGATATTAGAAAATA-TTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCTTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAAAATGGAAACATTTTTTTT-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTATAAAGTAAAGGAGCAATAGAGCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C19 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAATGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATTT--------ATATTATAAT------------------AGAATTCTTATTTATTTTATTAAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTATAAAAATTTATATATAATAATAAATAATTATAGACAATTAATTCTATATTAAATATTCTATTGTATATTAGATATTAGAAAATA-TTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCTTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAAAATGGAAACATTTTTTTG-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTATAAAGTAAAGGAGCAATAGAACTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C2 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAATGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATT---------ATATTATAAT------------------AGAATTCTTATTTATTTTATTAAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTCTAAAAATTTATATATAATAATAAATAATTATAGACAATTAATTCTATATTCAATATTCTATTGTATATTAGATATTAGAAAATA-TTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTATCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAAAATGGAAACATTTTTTT--ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTATAAAGTAAAGGAGCAATAGAGCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C20 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAATGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATTG--------ATATTATAAT------------------AGAATTCTTATTTATTTTATTAAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTATAAAAATTTATATATAATAATAAATAATTATAGACAATTAATTCTATATTAAATATTCTATTGTATATTAGATATTAGAAAATA-TTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAAAATGGAAACATTTTTTTG-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTATAAAGTAAAGGAGCAATAGAACTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C21 TTGAAATCATAATAACCGATTTTGAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAATGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATTT--------ATATTATAAT------------------AGAATTCTTATTTATTTTATTAAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTATAAAAATTTATATATAATAATAAATAATTATAGACAATTAATTCTATATTAAATATTCTATTGTATATTAGATATTAGAAAATA-TTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAAAATGGAAACATTTTTTTG-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTATAAAGTAAAGGAGCAATAGAACTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C22 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAATGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATTT--------ATATTATAAT------------------AGAATTCTTATTTATTTTATTAAACT----------GTTTAAGTTTATTAGAATAAATTATAAAAATTTATATATAATAATAAATAATTATAGACAATTAATTCTATATTAAATATTCTATTGTATATTAGATATTAGAAAATA-TTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAAAATGGAAACATTTTTTTG-ATCTTTTTGGAATCCATATGACTTCGAAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTATAAAGTAAAGGAGCAATAGAACTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C3 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAATGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATT---------ATATTATAAT------------------AGAATTCTTATTTATTTTATTAAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTCTAAAAATTTATATATAATAATAAATAATTATAGACAATTAATTCTATATTCAATATTCTATTGTATATTAGATATTAGAAAATA-TTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTATCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAAAATGGAAAAATTTTTTT--ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTATAAAGTAAAGGAGCAATAGAGCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C4 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAATGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATT-ATATTATTATATTATAAT------------------AGAATTCTTATTTATTTTATTAAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTCTAAAAATTTATATATAATAATAAATAATTATAGACAATTAATTCTATATTCAATATTCTATTGTATATTAGATATTAGAAAATA-TTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTATCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAAAATGGAAACATTTTTTT--ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTATAAAGTAAAGGAGCAATAGAGCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C5 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAATGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATT---------ATATTATAAT------------------AGAATTCTTATTTATTTTATTAAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTCTAAAAATTTATATATAATAATAAATAATTATAGACAATTAATTCTATATTCAATATTCTATTGTATATTAGATATTAGAAAATA-TTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTATCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTGAAATAAAATGGAAACATTTTTTT--ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTATAAAGTAAAGGAGCAATAGAGCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C6 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAATGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATT---------ATATTATAAT------------------AGAATTCTTATTTATTTTATTAAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTCTAAAAATTTATATATAATAATAAATAATTATAGACAATTAATTCTATATTCAATATTCTATTGTATATTAGATATTAGAAAATA-TTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTATCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTGAAATAAAATGGAAACATTTTTTT--ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTATAAAGTAAAGGAGCAATAGAACTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C7 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAATGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATTT--------ATATTATAAT------------------AGAATTCTTATTTATTTTATTAAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTATAAAAATTTATATATAATAATAAATAATTATAGACAATTAATTCTATATTAAATATTCTATTGTATATTAGATATTAGAAAATA-TTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAAAATGGAAACATTTTTTT--ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTATAAAGTAAAGGAGCAATAGAACTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C8 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAATGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATTT--------ATATTATAAT------------------AGAATTCTTATTTATTTTATTAAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTATAAAAATTTATATATAATAATAAATAATTATAGACAATTAATTCTATATTAAATATTCTATTGTATATTAGATATTAGAAAATA-TTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAAAATGGAAACATTTTTTTT-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTATAAAGTAAAGGAGCAATAGAACTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C9 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATCAATAAAAAAATGGAATATTTTTTAGTCAACATAAAAATAATAATAAATAAGAATTCTATTATAAATTT--------ATATTATAAT------------------AGAATTCTTATTTATTTTATTAAACTTTATTTATTAGTTTAAGTTTATTAGAATAAATTATAAAAATTTATATATAATAATAAATAATTATAGACAATTAATTCTATATTAAATATTCTATTGTATATTAGATATTAGAAAATA-TTCTTTGAATCCAGTTAATTCGGATTATTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTAGAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCCCTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTTTTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCAATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAAAATGGAAACATTTTTTTG-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAAAAAAAAAAAAGACTTCTAAAAAAAGAAGTATAAAGTAAAGGAGCAATAGAACTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAAACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCAT ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M16454] TITLE ITS_dataset_for_monophyly_assessment; LINK TAXA = Taxa5; DIMENSIONS NCHAR=758; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Phaseolus_coccineus ATCA-CGAGCGTTTCGA-AA-CG--C-ATGTGGG-TAAGAGAGGCCTA--AATTCAATAGAGCAGC-ACAT-GACTTACTTG-GT--CTCGTGCGTAA-CA-----CAGCCACCA-CCTATCA--TGGCACA---------CCCTACCAAGG--TCTCGATTTTC--AACCA---ACCATGAGGCAATAGAGCTCAC-GGGAGG---CCAACA-TTCGCC-CTGCACAATACCCCTATCA--------ATATAGGAAAT--TGGCGAG-----AGGCTTCGATATGTGACGCCCAGGCAGAC-GTGCCCTCAAC--CTAATGGCATCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCTA-GATATCCGTTGCCGAGAGT-CATTCTATAT-TATGTGTCAGAACACA-ACC------CGCACGAAAACCGTCTCCGGT----GCC-ATGCAGGTGCGCTCAGAGC-----AAATTTTAAAT----TCCTTG-----ACGCATT-CAGCGCCG----GGGTTTGTGTT---TTGGCACAAA---GGA-------------GAACGCACAA-CATCGTCCTCCT---CCGAACCAGA--GGCAAGC-CGAGGTGTTGAACACCTC---AAACCA--TGAACCCTATGTGTTCAA-ACTGATTCAC{AG}TGTTGGTC----TGCATG--TAAGGCA Piptanthus_nepalensis --CA-TGGGCGACCAACAAGACG--C-CCATGGG-TCA-AAAGTCCC--AGAT-CGGCACGAGTG--ACG--CGCACGATCG-AT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGCGC---------CCTCCACCAGGG--ACTCAATTTTTC-AACCA---ACCGTGAGA-CCTTGC--TCGCGGGA-AG---CCAACA-TTC---GCCCCACTCAAAGCCTAGC---------ACAAGGCTTAAGGCATTGG------GGGCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGAC--CTGATGGCGTCGGGCGCAACTTGCGTTCAACGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTAGGATATGTGTGTCACAACGCC-GCC------CGCACCGACACCGTCTCCGGT----GCCAACGAGGGCGCACTA-GA------CAA--TCTTTA---TTTCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTGT-TAG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG-GC---CAGGAGGAGA------------CCCACACAA-GGAGGGGCACCT---CCGACACAAG--AGGGGAC-CGAGGTGCCAAGCACCTC--TAG-CCAC----TGCTTTG- Sophora_davidii_S1 GTCG-TGGGCGGCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGCACG---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCATGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAAATAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGCCCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGCACCC-AGGC Sophora_davidii_S10 GTCG-TGGGC{AG}GCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGCAC{AG}---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCATGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAAATAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGC--AAG-CCACACCC-AGGCGGTCGA-ACAAATTCGCGGGTCGCAC----TGCTTTG-C Sophora_davidii_S11 GTCG-TGGGC{AG}GCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGCACG---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCATGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAAATAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGCACCC-AGGCGGTCGA-ACAAATTCGCGGGTCGCAC----TGCTTTG-CGACGA----T Sophora_davidii_S12 GTCG-TGGGC{AG}GCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGCGCA---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCATGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAAATAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGCACCC-AGGCGGTCAA-ACAAATTCGCGGGTCGCAC----TGCTTTG-CGA-TTAGGAT Sophora_davidii_S13 GTCG-TGGGC{AG}GCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGCGCA---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCATGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CG{AG}CGCCG----GGGTTT-TGTTAAATAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGCACCC-AGGCGGTCAA-ACAAATTCGCGGGTCGCAC----TGCTTTG-CGAGGATTCGA Sophora_davidii_S14 GTCG-TGGGC{AG}GCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGCGCA---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCATGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAAATAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGCACCC-AGGCGGTC{AG}A-ACAAATTCGCGGGTCGCAC----TGCTTTG-CGA-GAGTAGT Sophora_davidii_S15 GTCG-TGGGC{AG}GCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGC{AG}C{AG}---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCC{AG}TGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAAATAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGCACCC-AGGCGGTC{AG}A-ACAAATTCGCGGGTCGCAC----TGCTTTG-CGA-AAACATA Sophora_davidii_S16 GTCG-TGGGC{AG}GCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGC{AG}CA---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCATGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAAATAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGCACCC-AGGCGGTC{AG}A-ACAAATTCGCGGGTCGCAC----TGCTTTG-CGA----TGCT Sophora_davidii_S17 GTCG-TGGGC{AG}GCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGC{AG}CA---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCATGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGT{AG}CGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAAATAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGC-ACAAATTCGCGGGTCGCAC----TGCTTTG-CGAACCC-AGGCGGTC{AG}A-ACAAATT Sophora_davidii_S18 GTCG-TGGGCAGCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGCACA---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCATGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAAATAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGCACCC-AGGCGGTC{AG}A-ACAAATTCGCGGGTCGCAC----TGCTTTG-CGATTAGGATT Sophora_davidii_S19 GTCG-TGGGCAGCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGCACA---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCATGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAAATAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGACACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGC-ACAAATTCGCGGGTCGCAC----TGCTTTG-CGAACCC-AGGCGGTCAA-ACAAATT Sophora_davidii_S2 GTCG-TGGGCGGCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGCAC{AG}---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCATGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAAATAG-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAA-TAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGCACCC-AGGC Sophora_davidii_S20 GTCG-TGGGCAGCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGCACA---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCATGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAAATAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCG{AG}CACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGCACCC-AGGCGGTCAA-ACAAATTCGCGGGTCGCAC----TGCTTTG-CGAAGGCGGTC Sophora_davidii_S21 GTCG-TGGGCAGCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGCGCA---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCATGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAAATAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGCACCC-AGGCGGTCAA-ACAAATTCGCGGGTCGCAC----TGCTTTG-CGA-ACAGATT Sophora_davidii_S22 GTCG-TGGGCAGCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGCGCA---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCATGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CG{AG}CGCCG----GGGTTT-TGTTAAATAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGC-ACAAATTCGCGGGTCGCAC----TGCTTTG-CGAACCC-AGGCGGTCAA-ACAAATT Sophora_davidii_S23 GTCG-TGGGCAGCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGCGCA---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCATGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAAATAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGCACCC-AGGCGGTC{AG}A-ACAAATTCGCGGGTCGCAC----TGCTTTG-CGA---TGCTT Sophora_davidii_S24 GTCG-TGGGCAGCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGC{AG}C{AG}---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCATGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAAATAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGCACCC-AGGCGGTC{AG}A-ACAAATTCGCGGGTCGCAC----TGCTTTG-CGA-CGA--TG Sophora_davidii_S25 GTCG-TGGGCAGCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGC{AG}CA---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCATGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAAATAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGC-ACAAATTCGCGGGTCGCAC----TGCTTTG-CGAACCC-AGGCGGTCAA-ACAAATT Sophora_davidii_S26 GTCG-TGGGCAGCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGCAC{AG}---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCATGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAAATAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCG{AG}CACTA---GGGGGAC-CGAGGC{AG}CCACGCACCTC--GAG-CCGCACCC-AGGCGGTCAA-ACAAATTCGCGGGTCGCAC----TGCTTTG-CGATGAGGATT Sophora_davidii_S27 GTCG-TGGGCAGCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGCAC{AG}---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCATGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAAATAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGCACCC-AGGCGGTCGA-ACAAATTCGCGGGTCGCAC----TGCTTTG-CGA----TGCT Sophora_davidii_S28 GTCG-TGGGCAGCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGCACG---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCATGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAAATAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGCACCC-AGGCGGTCGA-ACAAATTCGCGGGTCGCAC----TGCTTTG-CGA-AGGCGGT Sophora_davidii_S29 GTCG-TGGGCAGCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGCACG---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCC{AG}TGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAAATAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGCACCC-AGGCGGTCGA-ACAAATTCGCGGGTCGCAC----TGCTTTG-CGAGGATTCGA Sophora_davidii_S3 GTCG-TGGGCGGCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGC{AG}C{AG}---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCATGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAAATAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGCACCC-AGGCGGTCGA-ACAAATTCGCGGGTCGCAC----TGCTTTG-CGA---TGCTT Sophora_davidii_S30 GTCG-TGGGCAGCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGCACG---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCC{AG}TGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGC{AG}ACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTA-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TCGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGC{CT}G-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAAATAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGCACCC-AGGCGGTC{AG}A-ACAA Sophora_davidii_S31 GTCG-TGGGCAGCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGCACG---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCC{AG}TGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAA-TAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGCACCC-AGGCGGTCAA-ACA{AG}ATTCGCGGGTCGCAC----TGCTTTG-CGA---TGCTT Sophora_davidii_S32 GTCG-TGGGCAGCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--GTCG-TGGGCAGCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACAATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGCACG---------CTCCACCACT-----CAACCACCA-TCCATCG--CGGCACG---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCATGCCTTGCA--------ACGAAG---CCAACA-TTCGCC-CC-TTTGCC{AG}TGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTATCGATGGT Sophora_davidii_S33 -ACAGATTCGCGGGTCGCAC----TGCTTTG-CGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Sophora_davidii_S34 GTCG-TGGGCAGCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGCACG---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCATGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCTG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAA-TAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCACCACGCACCTC--GAG-CCGCACCC-AGGCGGTCAA-ACAGATTCGCGGGTCGCAC----TGCTTTG-CGA-CGAGGAT Sophora_davidii_S35 GTCG-TGGGCAGCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGCACG---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCGTGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCTG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAA-TAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGCACCC-AGGCGGTCAA-ACAGATTCGCGGGTCGCAC----TGCTTTG-CGAGGATTCGA Sophora_davidii_S36 GTCG-TGGGCAGCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGCACG---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCGTGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACC{AG}TCTCCGG-----GCCGACGAGGGCGTGCTG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAA-TAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGCACCC-AGGCGGTCAA-ACAGATTCGCGGGTCGCAC----TGCTTTG-CGAGGATTCGA Sophora_davidii_S4 GTCG-TGGGCGGCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGC{AG}CA---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCATGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAAATAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG---GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGCACCC-AGGCGGT Sophora_davidii_S5 GTCG-TGGGCGGCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGC{AG}CA---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCATGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAAATAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGCACCC-AGGCGGTCAA-ACAAATTCGCGGGTCGCAC----TGCTTTG-CGACGA--TGG Sophora_davidii_S6 GTCG-TGGGCGGCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGCGCA---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCATGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAAATAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGCCCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGCACCC-AGGC Sophora_davidii_S7 GTCG-TGGGCGGCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGCACA---------CTCCACCACGG--{AG}CTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCATGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAAATAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGCACCC-AGGCGGTCGA-ACAAATTCGCGGGTCGCAC----TGCTTTG-CGAGGATTCGA Sophora_davidii_S8 GTCG-TGGGCGGCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGCACA---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCATGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAAATAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGCACCC-AGGCGGTCGA-ACAAATTCGCGGGTCGCAC----TGCTTTG-CGA-GAGTAGT Sophora_davidii_S9 GTCG-TGGGC{AG}GCCAAC-GGCCG--C-TCGTGGG-TCATGGAGTCCCA--AATCCGGTAGGGGCG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGCACA---------CTCCACCACGG--ACTCGATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTTGCCATGCCTTGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCTCCGG-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAAATAGGCCG--GG-AGGGG-------------CCCTCACGA-GGAGGGC-ACCG--CCCGGCACTA---GGGGGAC-CGAGGCGCCACGCACCTC--GAG-CCGCACCC-AGGCGGTC{AG}A-ACAAATTCGCGGGTCGCAC----TGCTTTG-CGA----TGCT Sophora_flavescens GTCG-TGGGCAGCCAAC-GGCCG--C-TCATGGG-TCAAAGAGTCACA--AATCCGGTAGGGGTG--ACA--CACACGATCG-GT--CTCGAGCTCTTACT-----CAACCACCA-TCCATCG--CGGCGCA---------CTCCACCACGG--ACTCAATTTT-C-AGCCA---ACCGCGAGG-CATCGC--TCAC-GGGAAG---CCAACA-TTCACC-CC-TTTACTATGCCTAGCA--------ACAGGGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCAGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACACTTGTCGCAACGCC-ACC-------ACACGGGCACCGTCTCCGGT----GCCGAGGGGGACGCACTA-GA------CAA--TCTCGAT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAA-TGGGCCA--GG-ATGGG-------------CCCGCACGA-GGAGGGC-ACCT--CCCAACACTT---GGGGGAC-CGAGGCACCATGCACCTC--AAG-CCGC----TGCTT-G-CGAACCC-AAGGAGTCAA-ACAAATTCACGGGTCGCAC----TGCT Sophora_moorcroftiana_ GTCG-TGGGCAGCCAAC-GGCCG--C-TCATGGG-TCATGGAGTCCCA--AATCCGGTAGGGGTG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGCACA---------CTCCACCACGG--ACTCAATTTTC--AGCCA---ACCGTGAGGGCATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CC-TTCGCTATGCCTTGCA--------ACAGGGCCGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACGCGTGTCGCAACGCC-ACC-------GCAC-GGCACCGTCT-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--CCGG-----GCCGACGAGGGCGTGCTG-GA------CAA--TCTCTGT--T-TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAA-TAGGCCG--GG-AGGGG-------------CCCTCACGA-GGATGGC-ACCT--CCCGACACTA---GGGGGAC-CGAGGCGCCATGCACCAC--GAG-CCGCACCC-AGGCGGT Sophora_tomentosa ATCT-TGGGCAGCCAAC-TGCCG--C-TTATGGG-TCAAAGAGTCCCA--AATCCAGTAGGGGTG--ACA--CACACGACCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCACCG--CGGCGCA---------CTCCACCACGA--GCTCAATTTTTC-AGCCA---ACCATGAGG-CATCGC--TCAC-GGGAAG---CCAACA-TTCGCC-CC-TTTACTATGCCTAGCA--------ACAGCGCTGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTA-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TCGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TTTTGGATACACATGTCGCAACGCC-ACC-------ACACAGTCATCGTCT-----GCCGACGAGGGCGTGCCG-GA------CAA--TCTCTGT--CCGA-----GCCGACGGGGGCGTGCTA-GG------CAA--TCTCGAT--T-TCCTTG-----GCGCATT-CGGCGCCC----GGTTTT-TGTTAA-TGGGCCA--AG-AGGGG-------------CCCGCACGA-GGAGGGC-ACCT--CCCAACACTA---GGGGGAC-CG Sophora_tonkinensis GTCG-TGGGCAGCCAAC-GGCCG--C-TCATGGG-TCAAAGAGTCCCG--GATCCGGTAGGGGTG--ACA--CACACGATCG-GT--CTCGAGCTTTTACT-----CAACCACCA-TCCATCG--CGGCGCA---------CTCCACCACGG--ACTCAAATTTC--AGCCA---ACCGTGAGG-CATCGC--TCGC-GGGAAG---CCAACA-TTCGCC-CT--TTACCATGCCTGGCA--------ACAGGGCCGAGG-CATTGGG-------GCAACGATGTGCGACACCCAGGCAGGC-GTGCCCTCGGC--CTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-TACC-------GCAC-GGCACCGTCTTTTGGATACGCGTGTCGCAACGCC-ACC-------ACACAGGCACCGTCTCCGG-----GCCGACGGGGGCGCACTA-GA------CAA--TATCGAT--T-TCCTTG-----GCACCTC-CGGCGCCG----GGGTTT-TGTTAA-TAGGCCG--GG-AGGGG-------------CCCGCACGA-GGAGGGC-ACCT--CCCGACACCA---GGGGGAC-CGAGGCGCCATGCACCCC--AAG-CCGCACCC-GAGCAGTCAA-ACAAATTCGCGGGTCGC Thermopsis_alpina_ GTCA-TGGGCGACGAACAAGACG--C-CCATGGG-TCACAAAGTCCC--AAATCCGGCACGAGTG--ACG--CGCACAATCA-AT--CTCGAGCTTTTACT-----CAACCACCA-TCAATCG--CGGCGC---------CCTCCACCACGG--ACTCAATTTTTC-AACCA---ACCGTGAGA-CCTTGC--TCGCGGGA-AG---CCAACA-TTC---GCCCCACTCAAAGCCTAGC---------ACAAGGC-TGAGGAATTGG------GGGCAACGATGTGCGACGCCCAGGCAGGC-GTGCCCTCGAC--CTGATGGCGTCGGGCGCAACTTGCGTTCAACGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-C-T-ACC-------GCAC-GGCACCGTCTTTGGGATATGTGTGTCACAACGCC-GCC------CGCACCGACACCGTCTCCGGT----GCCAACTGGGGCGGACTA-GA------CAA--TCTTGA---TTTCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTGT-TAGGC---CAGGAGGAGA------------CCCACACAA-GGAGGGGCACCT---CCGACACAAG--AGGGGAC-CAAGGTGCCAAGCACCTC--TAG-CCAC-CGA-GAGGAGTCAA-ACAAATTCACGGGTCG Trifolium_repens_ GTAG-ATAGCGCACAGA-GGGCG--C-GTGTGGGGTCAGTAAGTCCA----TTATGTCCGGAGTCCCACA--GCCACGATTG-GT--CTCGAGCGTGGGCT-----CATCCACCG-A-TATCG--CGGGAGA---------CTCCGTCCCGA--ACTTGCTTTTC--AACCA---ACCACGAGA----AGGTCTCGC-GGGAGG---TCAACT-TCCACCACCCCCTGCTGCACATT-TA--------ATTAGTTAAGTG-TGGCGGGCAGGGGGGTGACGATGTGTGACACCCAGGCAGGC-GTGCCCTCAGC--CTAATGGCTTTGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCG-ATGCAAGAGCCGA-GATATCCGTTGCCGAGAGT-CATTTTACATA-ACATGTCGTCGTGAA-GGCA-----CCCGCGGGACACGTCCCTCG-----------GCTGCCTCACCT-AA------CAG-CTTCGTAT---TCCTTG-----GCGCATT-CGGCGCCG----GGGTTT-TGTTAA-TAG--TCCTTG-----GCGCATG-AAGCGCCG----GGGTTAGTGTTTTGTCGGGAG---ACACGGGCTTGCGACC---GGATGCACCG-AGTCGCCCGCCC--GCCCTCTCGAC--GACGCACACGGGAGGACGAGCCCCAG--CCG-TTGT----TGCTT ; END; BEGIN TREES; TITLE ITS_dataset_for_monophyly_assessment; LINK TAXA = Taxa5; TRANSLATE 1 Sophora_davidii_S1, 2 Sophora_davidii_S2, 3 Sophora_davidii_S3, 4 Sophora_davidii_S4, 5 Sophora_davidii_S5, 6 Sophora_davidii_S6, 7 Sophora_davidii_S7, 8 Sophora_davidii_S8, 9 Sophora_davidii_S9, 10 Sophora_davidii_S10, 11 Sophora_davidii_S11, 12 Sophora_davidii_S12, 13 Sophora_davidii_S13, 14 Sophora_davidii_S14, 15 Sophora_davidii_S15, 16 Sophora_davidii_S16, 17 Sophora_davidii_S17, 18 Sophora_davidii_S18, 19 Sophora_davidii_S19, 20 Sophora_davidii_S20, 21 Sophora_davidii_S21, 22 Sophora_davidii_S22, 23 Sophora_davidii_S23, 24 Sophora_davidii_S24, 25 Sophora_davidii_S25, 26 Sophora_davidii_S26, 27 Sophora_davidii_S27, 28 Sophora_davidii_S34, 29 Sophora_davidii_S35, 30 Sophora_davidii_S36, 31 Sophora_davidii_S28, 32 Sophora_davidii_S33, 33 Sophora_davidii_S29, 34 Sophora_davidii_S30, 35 Sophora_davidii_S31, 36 Sophora_davidii_S32, 37 Sophora_tonkinensis, 38 Sophora_flavescens, 39 Sophora_tomentosa, 40 Phaseolus_coccineus, 41 Trifolium_repens_, 42 Thermopsis_alpina_, 43 Piptanthus_nepalensis, 44 Sophora_moorcroftiana_; TREE Tree_5 = [&R] ((40,((42,43),((37,(38,39)),(44,(1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,31,33,34,35,(36,(32,(28,(29,30))))))))),41); END; BEGIN TREES; TITLE 'cpDNA haplotype matrix for beast analysis (with repeatitive regions)'; LINK TAXA = Taxa1; TRANSLATE 1 Sophora_davidii_C1, 2 Sophora_davidii_C10, 3 Sophora_davidii_C11, 4 Sophora_davidii_C12, 5 Sophora_davidii_C13, 6 Sophora_davidii_C14, 7 Sophora_davidii_C15, 8 Sophora_davidii_C16, 9 Sophora_davidii_C17, 10 Sophora_davidii_C18, 11 Sophora_davidii_C19, 12 Sophora_davidii_C2, 13 Sophora_davidii_C20, 14 Sophora_davidii_C21, 15 Sophora_davidii_C22, 16 Sophora_davidii_C3, 17 Sophora_davidii_C4, 18 Sophora_davidii_C5, 19 Sophora_davidii_C6, 20 Sophora_davidii_C7, 21 Sophora_davidii_C8, 22 Sophora_davidii_C9; TREE TREE3 = [&R] (((19:106525.60273643976,18:106525.60273643976):323592.47016359045,(1:247144.73178279764,((12:49614.34098409038,17:49614.34098409038):86582.62497560967,16:136196.96595970006):110947.76582309758):182973.34111723257):957296.4397126916,(((((2:86476.23172772053,(14:65212.117079050346,3:65212.117079050346):21264.11464867017):32661.377107038163,(11:77096.73876097624,22:77096.73876097625):42040.870073782455):252269.56998016845,(13:129196.87904880753,15:129196.8790488075):242210.29976611963):-10740.09761199134,(20:159948.37671479833,((21:22543.04801160294,5:22543.048011602925):62225.250021589156,(4:22117.96538892799,6:22117.965388927994):62650.33264426411):75180.07868160623):200718.70448813747):453519.5492464286,(9:332346.7173040848,(10:193514.45149961312,(8:47817.77849715185,7:47817.77849715184):145696.6730024613):138832.26580447162):481839.9131452796):573227.8821633573); END; BEGIN TREES; TITLE cpDNA_dataset_for_monophyly_assessment; LINK TAXA = Taxa3; TRANSLATE 1 Salweenia_wardii, 2 Thermopsis_alpina, 3 Piptanthus_nepalensis_, 4 Sophora_flavescens, 5 Sophora_moorcroftiana_, 6 Sophora_prazeri_, 7 Sophora_tonkinensis_, 8 Sophora_tomentosa, 9 Sophora_davidii_C2, 10 Sophora_davidii_C5, 11 Sophora_davidii_C6, 12 Sophora_davidii_C4, 13 Sophora_davidii_C1, 14 Sophora_davidii_C3, 15 Sophora_davidii_C20, 16 Sophora_davidii_C17, 17 Sophora_davidii_C9, 18 Sophora_davidii_C16, 19 Sophora_davidii_C11, 20 Sophora_davidii_C15, 21 Sophora_davidii_C14, 22 Sophora_davidii_C22, 23 Sophora_davidii_C19, 24 Sophora_davidii_C21, 25 Sophora_davidii_C8, 26 Sophora_davidii_C13, 27 Sophora_davidii_C12, 28 Sophora_davidii_C18, 29 Sophora_davidii_C10, 30 Sophora_davidii_C7, 31 Phaseolus_coccineus_, 32 Trifolium_repens_; TREE Tree_1 = [&R] ((31,((((4,8),(6,7)),(5,((9,(10,11),12,13,14),((15,16,17,19,22,23,24),21,25,(26,27),29,30),18,20,28))),(1,(2,3)))),32); END; BEGIN TREES; TITLE 'cpDNA haplotype matrix for beast analysis (without repetitive regions)'; LINK TAXA = Taxa4; TRANSLATE 1 Sophora_davidii_C1, 2 Sophora_davidii_C12, 3 Sophora_davidii_C14, 4 Sophora_davidii_C15, 5 Sophora_davidii_C16, 6 Sophora_davidii_C17, 7 Sophora_davidii_C18, 8 Sophora_davidii_C19, 9 Sophora_davidii_C2, 10 Sophora_davidii_C20, 11 Sophora_davidii_C21, 12 Sophora_davidii_C22, 13 Sophora_davidii_C3, 14 Sophora_davidii_C4, 15 Sophora_davidii_C5, 16 Sophora_davidii_C6, 17 Sophora_davidii_C7, 18 Sophora_davidii_C8, 19 Sophora_davidii_C9; TREE TREE4 = [&R] ((((13:186463.88636652078,1:186463.88636652078):141836.99910270612,(14:74217.06038325006,9:74217.06038325006):254083.82508597683):240752.37067064265,(16:145329.05406150408,15:145329.05406150408):423724.2020783655):1030069.7253670042,((((10:176552.1907889384,8:176552.1907889384):87638.74572830269,(11:142100.00888139944,(12:95723.76242708253,19:95723.76242708253):46376.24645431689):122090.92763584165):172717.64777746575,(17:117655.3626717415,((18:32347.960203109233,2:32347.960203109233):72440.74696458744,3:104788.70716769667):12866.655504044815):319253.22162296536):478603.02143125125,(6:433207.0467500286,((5:64768.9564602387,4:64768.956460238696):145473.05941754475,7:210242.01587778344):222965.03087224517):482304.55897592945):683611.3757809156); END; BEGIN TREES; TITLE gscp_dataset_for_monophyly_assessment; LINK TAXA = Taxa2; TRANSLATE 1 Sophora_davidii_H14, 2 Sophora_davidii_H17, 3 Sophora_davidii_H21, 4 Sophora_davidii_H12, 5 Sophora_davidii_H5, 6 Sophora_davidii_H6, 7 Sophora_davidii_H22, 8 Sophora_davidii_H3, 9 Sophora_davidii_H13, 10 Sophora_davidii_H18, 11 Sophora_davidii_H9, 12 Sophora_davidii_H11, 13 Sophora_davidii_H7, 14 Sophora_davidii_H10, 15 Sophora_davidii_H1, 16 Sophora_davidii_H15, 17 Sophora_davidii_H16, 18 Sophora_davidii_H2, 19 Sophora_davidii_H8, 20 Sophora_davidii_H19, 21 Sophora_davidii_H4, 22 Sophora_davidii_H20, 23 Sophora_davidii_H23, 24 Sophora_flavescens, 25 Sophora_moorcroftiana_, 26 Sophora_tonkinensis_, 27 Sophora_japonica, 28 Sophora_tomentosa, 29 Trifolium_repens; TREE Tree_2 = [&R] ((27,(28,(24,(26,(25,(1,((2,10,20,22),3,4,(((5,8,15,18,21),6),11,(12,14),(13,19)),(7,23),9,(16,17)))))))),29); END;