#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 26, 2024; 4:29 GMT TreeBASE (cc) 1994-2008 Study reference: Vondrak J., Frolov I., Riha P., Hrouzek P., Palice Z., Nadyeina O., Halici G., Khodosovtsev A., & Roux C. 2013. New discoveries in biodiversity of Teloschistaceae lichen crusts in Central Europe north of the Alps. Fungal Diversity, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S13908] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=17; TAXLABELS Caloplaca_citrina_DQ173226 Caloplaca_citrina_DQ173239 Caloplaca_sp._aff._C._ulcerosa_USA_2 Caloplaca_sp._aff._C._ulcerosa_USA1_GU080298 Caloplaca_sp._aff._C._ulcerosa_USA3 Caloplaca_substerilis_Austria1_GU080299 Caloplaca_substerilis_Austria2 Caloplaca_substerilis_Bulgaria Caloplaca_substerilis_Czech_Republic Caloplaca_substerilis_Slovakia Caloplaca_ulcerosa_EU639623 Caloplaca_ulcerosa_EU639623_2 Caloplaca_ulcerosa_GU080293 Caloplaca_ulcerosa_GU080294 Caloplaca_ulcerosa_GU080295 Caloplaca_ulcerosa_GU080296 Caloplaca_ulcerosa_GU080297 ; END; BEGIN TAXA; TITLE Taxa2; DIMENSIONS NTAX=31; TAXLABELS Caloplaca_aff._crenularia_Canary_Islands Caloplaca_ammiospila_EF643515 Caloplaca_ammiospila_EF643516 Caloplaca_cerina_EU365861 Caloplaca_coralliza_FJ866794 Caloplaca_coralliza_FJ866796 Caloplaca_crenularia_AF353965 Caloplaca_crenularia_Bulgaria Caloplaca_crenularia_Crete_1 Caloplaca_crenularia_Crete_2 Caloplaca_crenularia_EF643511 Caloplaca_crenularia_EF643512 Caloplaca_crenularia_Hungary Caloplaca_crenularia_Iran Caloplaca_crenularia_Spain Caloplaca_crenularia_Turkey Caloplaca_ferruginea_FJ866808 Caloplaca_furfuracea_Austria Caloplaca_furfuracea_FJ866811 Caloplaca_furfuracea_FJ866813 Caloplaca_fuscorufa_EF643513 Caloplaca_fuscorufa_EF643514 Caloplaca_fuscorufa_Ukraine Caloplaca_herbidella_FJ866799 Caloplaca_herbidella_FJ866805 Caloplaca_herbidella_FJ866807 Caloplaca_herbidella_Turkey Caloplaca_scabrosa_Czech_Republic Caloplaca_sp._aff._scabrosa_Ukraine_1 Caloplaca_sp._aff._scabrosa_Ukraine_2 Caloplaca_stillicidiorum_EU365860 ; END; BEGIN TAXA; TITLE Taxa3; DIMENSIONS NTAX=23; TAXLABELS Caloplaca_aractina_GU723413 Caloplaca_areolata_Croatia Caloplaca_areolata_Montenegro Caloplaca_areolata_Spain Caloplaca_atroflava_HQ234606 Caloplaca_atroflava_HQ611276 Caloplaca_ceracea_HQ234600 Caloplaca_ceracea_HQ234603 Caloplaca_demissa_353961 Caloplaca_emili_Bulgaria Caloplaca_emili_Bulgaria_Rhodopes Caloplaca_emili_Czech_Republic_1 Caloplaca_emili_Czech_Republic_2 Caloplaca_emili_France Caloplaca_emili_Greece Caloplaca_erythrocarpa_EU639591 Caloplaca_fuscoatroides_HQ234599 Caloplaca_fuscoatroides_JN813404 Caloplaca_haematites_JN641769 Caloplaca_soralifera_JN641780 Caloplaca_teicholyta_EU639593 Caloplaca_tianshanensis_GU552276 Caloplaca_xerica_JN641792 ; END; BEGIN TAXA; TITLE Taxa4; DIMENSIONS NTAX=50; TAXLABELS Caloplaca_aquensis_HQ699652 Caloplaca_aquensis_HQ699656 Caloplaca_borysthenica_HQ699649 Caloplaca_borysthenica_HQ699655 Caloplaca_crenulatella_HQ699628 Caloplaca_crenulatella_s.lat._HQ699635 Caloplaca_crenulatella_s.lat._HQ699642 Caloplaca_crenulatella_s.lat._HQ699645 Caloplaca_crenulatella_s.lat._HQ699654 Caloplaca_crenulatella_s.lat._HQ699658 Caloplaca_diffusa_HQ699647 Caloplaca_diffusa_HQ699648 Caloplaca_erichansenii_HQ699638 Caloplaca_ferrarii_s.lat._Czech_Republic Caloplaca_ferrarii_s.lat._Czech_Republic_2 Caloplaca_ferrarii_s.lat._Czech_Republic_3 Caloplaca_ferrarii_s.lat._Czech_Republic_4 Caloplaca_ferrarii_s.lat._HQ699636 Caloplaca_ferrarii_s.lat._HQ699637 Caloplaca_ferrarii_s.lat._HQ699643 Caloplaca_ferrarii_s.lat._HQ699651 Caloplaca_ferrarii_s.lat._HQ699653 Caloplaca_ferrarii_s.lat._HQ699657 Caloplaca_ferrarii_s.lat._HQ699662 Caloplaca_interfulgens_Czech_Republic_1 Caloplaca_interfulgens_Czech_Republic_2 Caloplaca_interfulgens_Czech_Republic_3 Caloplaca_interfulgens_Czech_Republic_4 Caloplaca_interfulgens_Czech_Republic_5 Caloplaca_interfulgens_HQ699639 Caloplaca_interfulgens_HQ699640 Caloplaca_interfulgens_Slovakia_1 Caloplaca_interfulgens_Slovakia_2 Caloplaca_interfulgens_Southern_Russia Caloplaca_interfulgens_Turkey_1 Caloplaca_interfulgens_Turkey_2 Caloplaca_interfulgens_Turkey_3 Caloplaca_lactea_Greece Caloplaca_lactea_HQ699644 Caloplaca_lactea_Italy Caloplaca_marmorata_HQ699627 Caloplaca_marmorata_HQ699629 Caloplaca_marmorata_HQ699630 Caloplaca_marmorata_HQ699631 Caloplaca_sp._Southern_Russia Caloplaca_tominii_HQ699625 Caloplaca_tominii_HQ699626 Caloplaca_tominii_HQ699650 Caloplaca_trachyphylla_EU639651 Xanthoria_elegans_EU639642 ; END; BEGIN TAXA; TITLE Taxa5; DIMENSIONS NTAX=39; TAXLABELS Caloplaca_albopruinosa_EF093564 Caloplaca_albopruinosa_EF093566 Caloplaca_albopruinosa_EF093578 Caloplaca_albopustulata_EU192150 Caloplaca_alociza_EF090927 Caloplaca_alociza_EF090928 Caloplaca_alociza_EF090929 Caloplaca_alociza_EF090935 Caloplaca_alociza_EF090936 Caloplaca_badioreagens_EF081036 Caloplaca_badioreagens_EF081038 Caloplaca_badioreagens_EF081039 Caloplaca_badioreagens_EF081040 Caloplaca_chalybaea_AY313970 Caloplaca_chalybaea_AY313971 Caloplaca_chalybaea_AY313975 Caloplaca_chalybaea_EF093580 Caloplaca_concreticola_EU192151 Caloplaca_concreticola_EU192152 Caloplaca_concreticola_EU192153 Caloplaca_concreticola_EU192155 Caloplaca_demissa_AF353960 Caloplaca_demissa_AF353961 Caloplaca_diphyodes_JN641782 Caloplaca_diphyodes_JN641783 Caloplaca_diphyodes_JN641784 Caloplaca_erodens_EF090921 Caloplaca_erodens_EF090922 Caloplaca_erodens_EF090923 Caloplaca_erodens_EF090924 Caloplaca_molariformis_Kazakhstan Caloplaca_molariformis_Slovakia Caloplaca_molariformis_Turkey Caloplaca_molariformis_Ukraine_1 Caloplaca_molariformis_Ukraine_2 Caloplaca_obscurella_AY313976 Caloplaca_transcaspica_EU192156 Caloplaca_variabilis_AY233224 Caloplaca_variabilis_AY313969 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M16011] TITLE ITS_Caloplaca_emili_group; LINK TAXA = Taxa3; DIMENSIONS NCHAR=501; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Caloplaca_aractina_GU723413 CCGAGAGGGGGGCCCCAGCGCCCC-AGGGG-TCGTGCCCCGCACCTTTCCACCCTTT-GTGTATCTTCCACTGTTGCTTTGGCGGGCCCCGGGGCTCACGCCCCGGCGCTG-CCCCCCACAAGGGGCTCGCGAGCGCCCGCC-GAAGGCCCATCAAAAC-CCTGTTT--TTCAGTGCAGTCTGAGTCG--ACGAGAATAAA-CTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCCCTCAAGCACTGCTTGGTATTGGGTGCTCGCCCTCCCT----TCCGGGGGGGCGCGCCCGAAATTCAGTGGCGGTCCCGGTGGACTTCAAGCGCAGTAAA-TATT--TCGCTTT-GGAAGCCTTCTGCCGGTGG Caloplaca_areolata_Croatia CCGAGAGGGGGGCTTACGCGCCCC-AGGGG-TTCCGCCCCGCGCCTTTCTACCCTGT-GTGTATTTTCCACTGTTGCTTTGGCGGGCCCTGGGGCTCACGTCCCGGCGCTG-CCCCT-GTACGGGGTTCGCGAGCGTCCGCC-GAAGGCCTATCATCAA-TCTGTTT--TTCAGTGCAGTCTGAGTAT--ACGAAAATCAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCCCTCAAGCACTGCTTGGTATTGGGTGTTCGCC-TTCCCC-----TGGGGGGGCGTGCCTGAAATTCAGTGGCGGTCTCGGTAGACTTCAAGCGCAGTAAA-TATT--CCGCTTT-GGAAGCC-TCTGCCGACGG Caloplaca_areolata_Montenegro CCGAGAGGGGGGCTTACGCGCCCC-AGGGG-TTCCGCCCCGCGCCTTTCTACCCTGT-GTGTATTTTCCACTGTTGCTTTGGCGGGCCCCGGGGCTCACGTCCCGGCGCTG--CCCTTGTACGGGGTTCGCGAGCGTCCGCC-GAAGGCCTATCATCAA-TCTGTTT--TTCAGTGCAGTCTGAGTAT--ACGAAAATCAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCCCTCAAGCACTGCTTGGTATTGGGTGTTCGCC-CTCC-----------GGGGCGTGCCTGAAATTCAGTGGCGGTCTCGGTAGACTTCAAGCGCAGTAAA-TATT--CCGCTTT-GGAAGCC-TCTGCCGACGG Caloplaca_areolata_Spain CCGAGAGGGGGGCTTACGCGCCCC-AGGGG-TTCCGCCCCGCACCTTTCTACCCTGT-GTGTATTTTCCACTGTTGCTTTGGCGGGCCCCGGGGCTCACGTCCCGGCGCTG-CTCCT-ATACGGGGTTCGCGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTT--ATCAGGGCCGTCTGAGTAT--ATGAAAATTAATCTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCCCTCAAGCACTGCTTGGTATTGGGTGTTCGCC-TTCC-----------GGGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTAGACTTCAAGCGTAGTAAA-TATT--CCGCTTT-GGAAGCC-TCTGCCGGCGG Caloplaca_atroflava_HQ234606 CCGAGAGGGGG-CTCAC?CGCCC--AGGGG-TTCTGCCCCGCACCTTTCCACCCTAT-GTGTATCTTCCACTGTTGCTTTGGCGGGCCCCGGGGCTCACGTCCCGGCGCTG-CCCCT-ATAAGGGGTTCGCGAGCGCCCGCC-GAAGGCCCATTATCAA-TCTGTTT--ATCAGTGCCGTCTGAGTAC--ATGAAAATCAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCACTGCTTGGTA?TGGGTGCTCGCC-TTCC-----------GGGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTGGACTTCAAGCGTAGTAAA-TATT--CCGCTTT-GGAAGCC-TCTGCCGGCGG Caloplaca_atroflava_HQ611276 CCGAGAGGGGGGCTCACGCGCCCC-AGGGG-TTCTGCCCCGCACCTTTCCACCCTAT-GTGTATCTTCCATTGTTGCTTTGGCGGGCCCCGGGGCTCACGTCCCGGCGCTG-CCCCT-AGAAAGGGCTCGCGAGCGCCCGCC-GAAGGCCCATTATCAA-TCTGTTT--ATCAGTGCCGTCCGAGTAC--AAGAAAATCAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCACTGCTTGGTATTGGGTGCCCGCC-TTCC-----------GGGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTAGACTTCAAGCGTAGTAAA-TATT--CCGCTTT-GGAAGC-TTCTACCGGTGG Caloplaca_ceracea_HQ234600 CCGAGAGGGGGGCTCACGCGCCCC-AGGGG-TTCTGCCCCGCATCTTTCCACCCTAT-GTGTATCTTCCACTGTTGCTTTGGCGGGCCCCGGGGCTCATTTCCCGGCGCTG-CCCCT-GCAAGGGGCTCGCGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTT-TATCA-TGCAGTCTGAGTAT--ACGAAAATCAATT-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCACTGCTTGGTATTGGGTGCTCGCCATCCC-----TCTAGGGTGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTAGACTTCAAGCGTAGTAAA-TATT--CCGCTTT-GGAAGCC-TCTGCCGGCGG Caloplaca_ceracea_HQ234603 CCGAGAGGGGGGCTCACGCGCCCC-AGGGG-TTCTGCCCCGCATCTTTCCACCCTAT-GTGTATCTTCCACTGTTGCTTTGGCGGGCCCCGGGGCTCATTTCCCGGCGCTG-CCCCT-GCAAGGGGCTCGCGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTT-TATCA-TGCAGTCTGAGTAT--ACGAAAATCAATT-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCACTGCTTGGTATTGGGTGCTCGCCATCCC-----TCTAGGGTGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTAGACTTCAAGCGTAGTAAA-TATT--CCGCTTT-GGAAGCC-TCTGCCGGCGG Caloplaca_demissa_353961 TCGAGAGGGGGG-TCTCGCGCCCC-AGGGG-TTCTGCCCCGCACCTTTCCACCCTTT-GTGTACCTTCCATTGTTGCTTTGGCGGGCCCCGGGGCT-TT--CCCGGCGCTGGTCCCCTTCTGGGGGTTCGCGAGCGCCCGTC-AGAGACCCGTTAAAAA-TCTGTTT-TATCAGTGCAGTCCGAGTCGAAACAAAAATCAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCCTTGCTTGGTACTGGGTGCTCGCCCCCGC-----------GGAGCGCGCCCGAAATCTAGTGGCGGTCCAGGTGGACTTCAAGCGCAGCGAACTATTGTCCGCTTT-GGAAGCCTTCTGCCTGTGG Caloplaca_emili_Bulgaria ------------------------------------------ACCTTTCTACCCTTTTGTG{AG}-TCTTCCACTGTTGCTTTGGCGGGTCCCGGGGCTTCCGTCCCGGCGCCA-CCCCTTCTGAGGGGCTCGCGAGCGCCCGCC-GAA{AG}GCCTATCATCAA-TCTGTTC--ATCAGGGCAGTCTGAGTAT--ACGAAAATTAATCTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCTAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCCCTCAAGCATTGCTTGGTATTGGGTGTTCGCC-TTCCC----------GGGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTAGACTTCAAGCGTAGTAAA-TATT--CCGCTTT-GGAAGCC-TCTGCCGGCGG Caloplaca_emili_Bulgaria_Rhodopes CCGAGAGGGGGGCTCACGCGTCCC-AGGGG-TTCTGCCCCGCACCTTTCTACCCTTTTGTGCATCTTCCACTGTTGCTTTGGCGGGTCCCGGGGCTTCCGTCCCGGCGCCA-CCCCTTCTGAGGGGCTCGCGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTC--ATCAGGGCAGTCTGAGTAT--ACGAAAATTAATCTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCCCTCAAGCATTGCTTGGTATTGGGTGTTCGCC-TTCC--------GGGGGGG---------------------------------------------------------------------------------- Caloplaca_emili_Czech_Republic_1 CCGAGAGGGGGGCTCACGCGTCCC-AGGGG-TTCTGCCCCGCACCTTTCTACCCTTTTGTGCATCTTCCACTGTTGCTTTGGCGGGTCCCGGGGCTTCCGTCCCGGCGCCA-CCCCTTCTGAGGGGCTCGCGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTC--ATCAGGGCAGTCTGAGTAT--ACGAAAATTAATCTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCCCTCAAGCATTGCTTGGTATTGGGTGTTCGCC-TTCC-------GGGGGGGG---------------------------------------------------------------------------------- Caloplaca_emili_Czech_Republic_2 CCGAGAGGGGGGCTCACGCGTCCC-AGGGG-TTCTGCCCCGCACCTTTCTACCCTTTTGTGCATCTTCCACTGTTGCTTTGGCGGGTCCCGGGGCTTCCGTCCCGGCGCCA-CCCCTTCTGAGGGGCTCGCGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTC-AATCAGGGCAGTCTGAGTAT--ACGAAAATTAATCTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCCCTCAAGCATTGCTTGGTATTGGGTGTTCGCC-TTCC-------GGGGGGGG---------------------------------------------------------------------------------- Caloplaca_emili_France CCGAGAGGGGGGCTCACGCGTCCC-AGGGGTTTCTGCCCCGCACCTTTCTACCCTTTTGTGCATCTTCCACTGTTGCTTTGGCGGGTCCCGGGGCTTCCGTCCCGGCGCCA-CCCCTTCTGAGGGGCTCGCGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTC--ATCAGGGCAGTCTGAGTAT--ACGAAAATTAATCTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCCCTCAAGCATTGCTTGGTATTGGGTGTTCGCC-TTCC-------GGGGGGGGC--------------------------------------------------------------------------------- Caloplaca_emili_Greece CCGAGAGGGGGGCTCACGCGTCCC-AGGGG-TTCTGCCCCGCACCTTTCTACCCTTTTGTGCATCTTCCACTGTTGCTTTGGCGGGTCCCGGGGCTTCCGTCCCGGCGCCA-CCCCTTCTGAGGGGCTCGCGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTC--ATCAGGGCAGTCTGAGTAT--ACGAAAATTAATCTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCCCTCAAGCATTGCTTGGTATTGGGTGTTCGCC-TTCCC-------TGTGGGG---------------------------------------------------------------------------------- Caloplaca_erythrocarpa_EU639591 CCGAGAGGGGGGCTCACGCGCCCC-AGGGG-GTTTGCCCCGCACCTTTCCACCCTAT-GTGTATCTTCCAGTGTTGCTTTGGCGGGCCCCGGGGTTCACCTCCCGGCGCCG-TCCCT-GTAAGGGGCCGGTGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTTATATCGGTGTGGTCTGAGGAT--ACGAAAATAAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCACTGCTTGGTATTGGGTGCTCGC--TTCCCCTCCTGCGGGGTGGCGCGCCCGAAATTCAGTGGCGGTCCCGGCGGACTTCAAGCGTAGTAAA-TATT--CCGCTTT-GGAAGAC-TCTGCCCGTGG Caloplaca_fuscoatroides_HQ234599 CCGAGAGGGGGGCTCACGCGCCCC-AGGGG-TTCTGCCCCGCACCTTTCCACCCTAT-GTGTATCTTCCACTGTTGCTTTGGCGGGCCCCGGGGCTTATTTCCCGGCGCTG-CCCCT-GCAAGGGGCTCGCGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTT-TATCA-TGCAGTCTGAGTAT--ACGAAAATCAATTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCACTGCTTGGTATTGGGTGCTCGCCATCCC-----TCTAGGGTGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTAGACTACAAGCGTAGTAAA-TATT--CCGCTTT-GGAAGCC-TCTGCCGGCGG Caloplaca_fuscoatroides_JN813404 CCGAGAGGGGGGCTCACGCGCCCC-AGGGG-TTCTGCCCCGCACCTTTCCACCCTAT-GTGTATCTTCTACTGTTGCTTTGGCGGGCCCCGGGGCTTATTTCCCGGCGCTG-CCCCT-GCAAGGAGCTCGCGAGCGCCCGCC-GAAGGCCTATCATCAA-TCTGTTT-TATCA-TGCAGTCTGAGTAT--ACGAAAATCAATT-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCACTGCTTGGTATTGGGTGCTCGCCATCCC-----TCTAGGGTGGTGCGCCCGAAATTCAGTGGCGGTCTCGGTAGACTTCAAGCGTAGTAAA-TATT--CCGCTTT-GGAAGCC-TCTACCGGCGG Caloplaca_haematites_JN641769 CCGAGAGGGGGGGTTTCGCGCCCC-AGGGG-CTTCGCCCCGTACCTTTCCACCCTTT-GTGTATCTTCCACTGTTGCTTTGGCGGGCCCCGGGGCTCTTGTCCCGGCGCCG-CCCCCCACCAGGGGCTCGCGAGCGCCCGCC-GAAGGCCCATGAAAAT-CCTGTCT--TTCAGTGCAGTCTGAGTAT--ACGAGAATGAA-CTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTACTCCGGGGGGCATGCCTGTTCGAGCGTCATTAC-TCCCTCAAGCAATGCTTGGTATTGGGTGCTCGCCCTTCCT----TCCGGGGGGGCGCGCCCGAAATTCAGTGGCGGTCCCGGCGGACTTCAAGCGTAGTAAA-TACC--CCGCTTT-GGAAGCCTTTCG------- Caloplaca_soralifera_JN641780 CCGAGAGGGGGGCTCACGCGCCCC-AGGGG-TTCTGCCCCGCACCTTTCCACCCTAT-GTGTATCTTCCCCTGTTGCTTTGGCGACCCCGGGGGCTC-CGTCCCGGCGCTG-CCCCT-ATATAGGGCTCGCGAGCGCCCGCC-GAAGGCCCACTATCAA-TCTGTTT--ATCAGTGCCGTCTGAGTAT--AAGAAAATCAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATACCTGTTCGAGCGTCATTACACACCTCAAGCACTGCTTGGTATTGGGTGCCCGCCCTC-----------GAGGGGCGCGCCCGAAATCCAGTGGCGGTCCCGGTGGACTTCAAGCGTAGTAAA-TATT--CCGCTTTTGGAAGCC-TCCGCCGGCGG Caloplaca_teicholyta_EU639593 CCGAGAGGGGGGCTAACGCGCCCC-AGGGG-TTCTGCCCCGCACCTTTCTACCCTAT-GTGTATCTTCCACTGTTGCTTTGGCGGGCCCCGGGGTTCACCTCCCGGCGTCG-TCCCT-GTAAGGGGCTGGCGAGCGCCCGCCCGAAGGCCCATCATCAA-TCTGTTT--ATCAGTGTGGTCTGAGGAT--ACGAAAATCAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCACTGCTTGGTATTGGGTGCTCGC--TTCCCCTC-TGCGGGGTGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTGGACTTCAAGCGTAGTAAA-TATT--CCGCTTT-GGAAGAC-TCCGCCGGTGG Caloplaca_tianshanensis_GU552276 CCGAGAGGGGGGCTCACGCGCCCC-AGGGG-TTCTGCCCCGCACCTTTCTACCCTTT-GTGTATCTTCCACTGTTGCTTTGGCGGGTCCCGGGGCCCAGGTCCCGGCGCTGGCCCCTTATCAGGGGTTCGCGAGCGCCCGCC-GAAGGCCCATCATAAA-CCTGTTT-TATCAGTGCAGTCTGAGTAT--ACGAAAATCAAAC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACATCTCTCAAGCACTGCTTGGTATTGGGTGCTCGCCCTTTC-----TTCCGGGGGGCGCGCCCGAAATTTAGTGGCGGTCTCGGTGGACTTCAAGCGCAGTAAA-TATT--CCGCTTT-GGAAGCCTTCCGCCGG--- Caloplaca_xerica_JN641792 CCGAGAGGGGGGCTCACGCGCCCC-AGGGG-TTCTGCCCCGCACCTTTCCACCCTAT-GTGTATCTTCCACTGTTGCTTTGGCGGGCTCCGGGGCTCACGTTTCGGCGCTG-CCCCT-CC-CGGGGTTCGCGAGCGCCCGCC-GAAGGCCCATTATCAAACCTGTTT--ATCAGTGCAGTCTGAGTAT--GTGAAAATCAATC-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCACCGCTTGGTATTGGGTGCTCGTC-TT----------GGGGGGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTGGACTTCAAGCGCAGTAAA-TATT--CCGCTTT-GGAAGCC-TCTACCGGTGG ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M16007] TITLE ITS_Caloplaca_ulcerosa_group; LINK TAXA = Taxa1; DIMENSIONS NCHAR=519; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Caloplaca_citrina_DQ173226 AGAGAGGGACGTGCGGTTGCTTGCGGCCCACGGCCCGGGGGGG--TTCCCCTCTACTCTTCAACCCTATGCGTACCAACCTCTGTTGCTTCGGCGAGCGCCGGGGGG-TCT-ATACGCCTCGGCCCCGGCTTCGGTCGGTGAGTTCTCGCCGAAGACCCAATTCC-AATCTATTTGCAGTCCCGTCCGAGCGCATCCAT-AAA-TCCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTTGCTTGGTATTGGGCGTTCGCTTCCCC--ATTCGGGG-GGGCGCGCCTGTAAACTAGTGGCGGCCCCGGGGGGACCTCAAGCGTAGTAGAACCTT-TT-CGCTTGGGAGGTGCCA-CCCAGGGCTCGGCCGTCAA Caloplaca_citrina_DQ173239 AGAG-GGGACATGCGGCTGCTCGCGGCCCATGTCCCGGGGGAGC-TTCCCC-CAACTCTTCAACCCCATGTGTACCTACCTCTGTTGCTTCGGCGAGCGCGGGGGGGCTCTCGGGCGCCCCCGCCCCGGCTTCGGTCGGTGAGTTCTCGCCCGAAGCCCAACCTT-ATCCTGTTTGCAGCCATGTCCGAGCGCACCGATAAAAATTCCATCAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTTGCTTGGTATTGGGCGTTCGCTTCCTTCTTTTGGGGG-AGGCGTGCCCGTAAACTAGTGGCGACCCCGGGGGGATCTCAAGCGCAGTTGAACCTT-AT-CGCTTGCAAGATGCCGCCCCGGGATCCGGCCGTCAA Caloplaca_sp._aff._C._ulcerosa_USA_2 AGAGCGGG-CAGGC--TT---CACGGCT-GCGCCC-GGGCGGGCAACCCCCGCAACTCTTCAACCCTGTGTTTACCAACCACTGTTGCTTCGGCGAGCGTTGGGGCGCCTC---GCGCCTCGGCCCCGGCCTCGGTCGGTGAGTTCTCGCCCGAGGCTCAACCCC-ATTCTGTTCACAGTGATGTCCGAGTACACCGATTAAA--TCAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCCTCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTTGCTTGGTATTGGGC-TTCGCCCCCC-ACGTC-AGGGGCGGCGTGCCCGCAAATTAGTGGCGG-TCCAGGGAGACCTCAAGCGCAGTA-AATCTGTCA-CGCTTTCGAGGTGTCG-CCTGCGGCCCGGCCGGAAA Caloplaca_sp._aff._C._ulcerosa_USA1_GU080298 AGAGCGGG-CAGGC--TT---CACGGCT-GCGCCC-GGGCGGGCAACCCCCGCAACTCTTCAACCCTGTGTTTACCAACCACTGTTGCTTCGGCGAGCGTTGGGGCGCCTC---GCGCCTCGGCCCCGGCCTCGGTCGGTGAGTTCTCGCCAGAGGCTCAACCCC-ATTCTGTTCACAGTGATGTCCGAGTACACCGATTAAA--TCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCCTCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTTGCTTGGTATTGGGC-TTCGCCCCCC-ACGTC-AGGGGCGGCGTGCCCGCAAATTAGTGGCGG-TCCAGGGAGACCTCAAGCGCAGTA-AATCTTTCA-CGCTTTCGAGGTGTCG-CCTGCGGCCCGGCCGGAAA Caloplaca_sp._aff._C._ulcerosa_USA3 AGAGCGGG-CAGGC--TT---CACGGCT-GCGCCC-GGGCGGGCAACCCCCGCAACTCTTCAACCCTGTGTTTACCAACCACTGTTGCTTCGGCGAGCGTTGGGGCGCCTC---GCGCCTCGGCCCCGGCCTCGGTCGGTGAGTTCTCGCCAGAGGCTCAACCCC-ATTCTGTTCACAGTGATGTCCGAGTACACCGATTAAA--TCAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCCTCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTTGCTTGGTATTGGGC-TTCGCCCCCC-ACGTC-AGGGGCGGCGTGCCCGCAAATTAGTGGCGG-TCCAGGGAGACCTCAAGCGCAGTA-AATCTTTCA-CGCTTTCGAGGTGTCG-CCTGCGGCCCGGCCGGAAA Caloplaca_substerilis_Austria1_GU080299 AGAGCGGG-CAGGC--TT---TACGGCC-GCGCCC-GGGCGGGCAACCCCCGCAACTCTTCAACCCTGTGTTTACCAACCACCGTTGCTTCGGCGAGCGTTGGGGCGCCCC---GCGCCCCGGCCCCGGCCCCGGCCGGTGAGTTCTCGCCAGAGGCCCAACCCC-ATCCTGTTCACAGTAACGTCCGAGTACACCGATCAAA--TCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCCTCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCATCCCTCAAGCTTTGCTTGGTATTGGGC-TTCGCCCCCC-GT-TCCAGGG-CGGCGTGCCCGCAAATTAGTGGCGG-TCCAGGGAGACTTCAAGCGCAGTA-AATCTTTCA-CGCTTCCGAGGTCTCG-CCTGCGGCCCGGCCGGAAA Caloplaca_substerilis_Austria2 AGAGCGGG-CAGGC--TT---TACGGCC-GCGCCC-GGGCGGGCAACCCCCGCAACTCTTCAACCCTGTGTTTACCAACCACCGTTGCTTCGGCGAGCGTTGGGGCGCCCC---GCGCCCCGGCCCCGGCCCCGGCCGGTGAGTTCTCGCCAGAGGCCCAACCCC-ATCCTGTTCACAGTAACGTCCGAGTACACCGATCAAA--TCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCCTCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCATCCCTCAAGCTTTGCTTGGTATTGGGC-TTCGCCCCCC-GT-TCCAGGG-CGGCGTGCCCGCAAATTAGTGGCGG-TCCAGGGAGACTTCAAGCGCAGTA-AATCTTTCA-CGCTTCCGAGGTCTCG-CCTGCGGCCCGGCCGGAAA Caloplaca_substerilis_Bulgaria AGAGCGGG-CAGGC--TT---CGCGGCT-GCGCCC-GGGCGGGCAACCCCCGCAACTCTTCCACCCTGTGCGTATCAACCCCTGTTGCTTCGGCGAGCGTTGGGGCGCCCC---GCGCCCCGGCCCCGGCCCCGGTCGGTGAGTTCTCGCCAGAGGCCCAACCCC-ATCCTGTTCACAGTGACGTCCGAGTACACCGATTAAA--TCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCCTCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTC{AC}AGCTTTGCTTGGTATTGGGCGTTCGCCTCCC-GCGTC-AGGG-CGGTGCGCCCGCAAATTAGTGGCGG-TCCGGGG{AG}GACTTCAAGCGCAGTA-AATCTTTCA-CGCTTCCGAGGTCTCGCCCTGCGGCTCGGCCGGAAA Caloplaca_substerilis_Czech_Republic AGAGCGGG-CAGGC--TT---CGCGGCT-GCGCCC-GGGCGGGCAACCCCCGCAACTCTTCCACCCTGTGCGTATCAACCCCTGTTGCTTCGGCGAGCGTTGGGGCGCCCC---GCGCCCCGGCCCCGGCCCCGGTCGGTGAGTTCTCGCCAGAGGCCCAACCCC-ATCCTGTTCACAGTGACGTCCGAGTACACCGATTAAA--TCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCCTCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTTGCTTGGTATTGGGCGTTCGCCTCCC-GCGTC-AGGG-CGGTGCGCCCGCAAATTAGTGGCGG-TCCGGGGAGACTTCAAGCGCAGTA-AATCTTTCA-CGCTTCCGAGGTCTCG-CCTGCGGCTCGGCCGGAAA Caloplaca_substerilis_Slovakia AGAGCGGG-CA{AG}GC--{AC}T---CACGGCT-GCGCCC-GGGCGGGCAACCCCCGCGACTCTTCAACCCTGTGTGTACCAACCATTGTTGCTTCGGCGAGCGTTGGGGCGCCCC---GCGCCCCGGCCCCGGCCTCGGTCGGTGAGTTCTCGTCAGAGGCCCAACCTC-ATTCTGTTCACAGTGACGTCCGAGTACACCGATTAAA--CCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCCTCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTTGCTTGGTGCTGGGC-TTCGCCTCCCCGTGTC-AGGGGCGGCGTGCCCGCAAATTAGTGGCGG-TCCGGGGAGACTTCAAGCGCAGTA-AATCTTTCA-CGCTTCCGAGGTCTCG-CCCGCGGTCCTGCCGGAAA Caloplaca_ulcerosa_EU639623 AGAG-GGG?CAGGC--TT---CGCGGCC-GCGCCCTCGGGGGGAAACCCCCGTAACTCTTCAACCCACTGTGTATCTACCTTCGTTGCTTCGGCGAGCGTTGGGGCGCCTT---GCGCCTCGGCCCCGGCCTCGGTCGGTGAGCTCTCGCCCGAGGCCCAACCTCAAGTCTGTTTAGAGTACCGTCCGAGCACA-CGATTAAA--TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCCTCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTTGCTTGGTATTGGGCCTTCGTCTCCC-TCCCAGAGGG-CGGCGTGCCCGTAAACTAGTGGCGG-TCCAGGGAGACCTCAAGCGCAGTA-AATCT--CAACGCTTTCGAGGTGTCG-CCTGCGGCCCGGCCGTGAA Caloplaca_ulcerosa_EU639623_2 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Caloplaca_ulcerosa_GU080293 AGAG-GGGTCCGGC--TT---CGCGGCC-GCGCCCTCGGGGGGAAACCCCCGTAACTCTTCAACCCCGTGTGTATCTACCTCTGTTGCTTCGGCGAGCGTCGAGGCGTCTT---GCGCCCCGGCCCCGGCCTCGGCCGGCGAGTTCTCGCCAGAGGCCCAACTTCAAGCCTGTTCAGAGTACTGTCCGAGCACA-CGATCAAA--CGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCCTCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTTGCTTGGTATTGAGCCTTCGTCCCCC-CCCCCGTGGG-CGGCGTGCCCGCAAATTAGTGGCGG-TCCAGGGAGATCTCAAGCGCAGTA-AATCT--CAACGCTTTCGAGGTATCG-CCTGCGGCCCGGCCGTGAA Caloplaca_ulcerosa_GU080294 AGAG-GGGTCAGGC--TT---CGCGGCC-GCGCTCTCGGGGGGAAACCCCCGTAACTCTTCAACCCAGTGTGTATCTACCTCCGTTGCTTTGGCGAGCGTTGGGGCGCTTT---GCGCCTCGGCCCCGGCCCCGGCCGGTGAGCTCTCGCCAGAGGCCCAGCCTCAAGTCTGTTTAGAGTACCGTCCGAGCATA-CGATTAAA--TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCCTCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTTGCTTGGTATTGGGCCTTCGTCTCCC-TCCTCGAGGG-CGGCGTGCCCGTAAACTAGTGGCGG-TCCAGGGAGACCTCAAGCGCAGTA-AATCT--CAACGCTTGCGAGGTGTCG-CCTGCGGCCCGGCCGTGAA Caloplaca_ulcerosa_GU080295 AGAG-GGGTCAGGC--TT---CGCGGCC-GCGCCCTCGGGGGGAAACCCCCGTAACTCTTCAACCCACTGTGTATCTACCTTCGTTGCTTCGGCGAGCGTTGGGGCGCCTT---GCGCCTCGGCCCCGGCCTCGGTCGGTGAGCTCTCGCCCGAGGCCCAGCCTCAAGTCTGTTTAGAGTACCGTCCGAGCACA-CGATTAAA--TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCCTCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTTGCTTGGTATTGGGCCTTCGTCTCCC-TCCCAGAGGG-CGGCGTGCCCGTAAACTAGTGGCGG-TCCAGGGAGACCTCAAGCGCAGTA-AATCT--CAACGCTTTCGAGGTGTCG-CCTGCGGCCCGGCCGTGAA Caloplaca_ulcerosa_GU080296 AGAG-GGGTCGGGC--TT---?GCGGCC-GCGCACTCGGGGGGAAACCCCCGCAACTCTTCCACCCACTGTGTATCTACCTTCGTTGCTTCGGCGAGCGTTGGGGCGCCTT---GCGCCTCGGCCCCGGCCCCGGTCGGTGAGCTCTCGCCCGAGGCCCAGCCTCAAGTCTGTTTAGAGTACCGTCCGAGCATA-CGATTAAA--TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCCTCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTTGCTTGGTATTGGGCCTTCGTCTCCC-TCCCCGAGGG-CGGCGTGCCCGTAAACTAGTGGCGG-TCCAGGGAGACCTCAAGCGCAGTA-AATCT--CAACGCTTTCGAGGTGTCG-CCTGCGGCCCGGCCGTGAA Caloplaca_ulcerosa_GU080297 AGAG-GGGTCAGGC--TT---CGCGGCC-GCGCCCTCGGGGGGAAACCCCCGTAACTCTTCAACCCA{CG}TGTGTATCTACCT{CT}CGTTGCTTCGGCGAGCGTTGGGGCGC{CT}TT---GCGCCTCGGCCCCGGCC{CT}CGG{CT}CGGTGAGCTCTCGCC{AC}GAGGCCCAGCCTCAAGTCTGTTTAGAGTACCGTCCGAGCACA-CGATTAAA--TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCCTCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTTGCTTGGTATTGGGCCTTCGTCTCCC-TCCCAGAGGG-CGGCGTGCCCGTAAACTAGTGGCGG-TCCAGGGAGACCTCAAGC----------------------------------------------------- ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M16012] TITLE ITS_Caloplaca_molariformis_group; LINK TAXA = Taxa5; DIMENSIONS NCHAR=535; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Caloplaca_albopruinosa_EF093564 CCGAGAGG--GGGG-CTCACGCGCCCCAGGGG-TTCTGCCCCG-CACCTTT-CCACCCTTTGTGTATCTT-CCATTGTTGCTTTGGCGGGCCCCGGGGC--TCACGTCCCGG-CGCTGGCCC-CCT-ACACGGGG-TTCGCGAG-CGCCCGCCGAAGGCCCATCAAAAATCCG-TT-TATCATTG-CAGTCTGAGTCTACG--AGAATGAAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGGCATGCCTGTTCGAGCGTCATT-ACACCCCTCAAGCAC-TGCTTGGTATTGGG-TGCTCGCCC-TCC--TCT-CGGG--GGGGCGCGCCCGAAATTCAGTGGCGGTCTCGGCGGACTTCAAGCGCAGTAAA---TAT--TCCGCTTTGGAAGC-TTTCCAC-GGTGGCCC-AGCCAGCAA-CCTA Caloplaca_albopruinosa_EF093566 CCGAGAGG--GGGG-CTCACGCGCCCCAGGGG-TTCTGCCCCG-CACCTTT-CCACCCTTTGTGTATCTT-CCATTGTTGCTTTGGCGGGCCCCGGGGC--TCACGTCCCGG-CGCTGGCCCCCCT-GCAAGGGG-TTCGCGAG-CGCCCGCCGAAGGCCCATCAAAAATCCG-TT-TATCAGTG-CAGTCTGAGTATACG--AGAACGAAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATTTACACCCCTCAAGCAC-TGCTTGGTATTGGG-TGCTCGCCC-TCC--TCT-CGGG--AGGGCGCGCCCGAAATTCAGTGGCGGTCTCGGCGGACTTCAAGCGCAGTAAA---TAT--TCCGCTTTGGAAGC-TTTCCACCGGTGGCCC-AGCCAGCAAGCCTA Caloplaca_albopruinosa_EF093578 CCGAGAGG--GGGG-CTCACGCGCCCCAGGGG-TTCTGCCCCG-CACCTTT-CCACCCTTTGTGTATCTT-CCACTGTTGCTTTGGCGGGCCCCGGGGT--TCACGTCCCGG-CGCTGGCCC-CCTAAGAAGGGG-TTCGCGAGGCGCCCGCCGAAGGCCCATCGAAAATCTG-TT-TATCAGTG-CAGTCTGAGTCTACG--AGAATGAAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTTATT-ACACCCTTCAAGCTC-TGCTTGGTATTGGG-TGCTCGCCC-TCC--TTT-CGGG---GGGCGCGCCCGAAATCCAGTGGCGGTTTCGGTGGACTTCAAGCGCAGTAAA---TAT--TCCGCTTCGGAAGC-CTTCTACCGGTGGCCC-AGCCAGTAAACCTT Caloplaca_albopustulata_EU192150 CC{CT}{AT}GA{GT}G--G{GT}GG-CTCACGCGCCCCAGGGG-TTCCG{CG}{CG}C{CG}G-{CG}{AG}CCTTT-CTACCCTTTGTGTATCTT-CCACTGTTGCTTTGGCGGGCCCCGGGGT--TCACGTCCCGG-CGCTGGCC--CCT-ACGCGGGG-TCTGCGAG-TGCCCGCCGAAGGCCCATCAAAATTCTG-TT-TATTAGTG-CGGTCTGAGTATACG--AAAACTAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAG{CG}GAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGG-CATGCCTGTTCGAGCGTCATT-ACATCCCTCAAGCAC-TGCTTGGTATTGGG-TGGTCGTCC-TCCG-TTC-CGGG---GGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTGGA{AC}{GT}TCAAGCGCAGCAAA---TAT--TCCGCTTTGGAAGC-TTTC-ACCGGTGGCCC-TGCCAGCAAACCAT Caloplaca_alociza_EF090927 CCGAGAGG--GGGG-CTCACGCGCTCCAGGGG-TTC-GCCCCG-CACCTTT-CCACCCTTTGTGTATCTT-CCACTGTTGCTTTGGCGGGCCCCGGGGC--TCACGTCCCGG-TGCTGGCCCTCC--AAAAGGGG-TTTGCGAG-CGCCCGCCGAAGGCCCATTATCAATCTG-TT-TATCAGTG-CAGTCTGAGTGTAC---GAAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACACCCCTCAAGCAT-TGCTTGGTATTGGG-TGCTCGCCC-TCCG-TT--CGGG---GGGCGCGCCCGAAATTCAGTGGCGGTCCCGGTGGACTTCAAGCGCAGTAAA---TAT--TTCGCTTTGGAAGC-TTTCCGCCGGTGATCC-AGCCAATAAGCCTT Caloplaca_alociza_EF090928 CCGAGAGG--GGGG-CTCACGCGCCCCAGGGG-TTC-GCCCCG-CACCTTT-CCACCCTTTGTGTATCTT-CCACTGTTGCTTTGGCGGGTCCCGGGGC--TTACGTCCCGG-CGCTGGCC--CCT-ATAAGGGG-TTCGCGAG-CGCCCGCCGAAGGCCCATTATCAACCTG-TT-TATCAGTG-CAGTCTGAGTGTACG--GAAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACATCCCTCAAGCAT-TGCTTGGTATTGGG-TGCCCGCCC-TCCG-TT--CGGG---GGGCGCGCCCGAAATTCAGTGGCGGTCCCGGTGGACTTCAAGCGCAGTAAA---CAT--TTCGCTTTGGAAGC-TTTCCGCCGTTGGCCC-AGCCAATAAGCCTT Caloplaca_alociza_EF090929 CCGAGAGG--GGGG-CTCACGCGCCCCAGGGG-TTC-GCCCCG-CACCTTT-CCACCCTTTGTCTATCTT-CCACTGTTGCTTTGGCGGGCCCCGGGGC--TCACGTCCCGG-CGCTGGCCC-CCT-ATAAGGGG-TTCGCGAG-CGCCCGCCGAAGGCCCATTATCAACCTG-TT-TATCAGTG-CAGTCTGAGTGTACG--GAAATAATTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACACCTCTCAAGCAT-TGCTTGGTATTGGG-TGCCCGCCC-TCTC-TT--CGGG---GGGCGCGCCCGAAATTCAGTGGCGGTCCCGATGGACTTCAAGCGCAGTAAA---TAT--TTCGCTTTGGAAGC-TTTCCGCCGGTGGCCC-TGCCAATAAACCTT Caloplaca_alociza_EF090935 CCGAGAGG--GGGG-CTTTCGCGCCCCAGGGG-TTC-GCCCCG-TACCTTT-CCACCCTTTGTGTATCTT-CCACTGTTGCTTTGGCGGGCCCCGGGGC--TCACGTCCCGG-CGCTGGCCC-CCT-ATAAGGGG-TTCGCGAG-CGCCCGCCGAAGGCCCATTATCAATCCG-TT-TATCAGTG-CAGTCTGAGTGTACA--GAAATGAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACATCTCTCAAGCAT-CGCTTGGTATTGGG-TGTTCGCCCCTCCG-TT--CGGG---GGGCGCACCTGAAATTCAGTGGCGGTCCCGGTGGACTTCAAGCGCAGTAAA---TAT--TTCGCTTTGGAAGC-TTTC--------------------------- Caloplaca_alociza_EF090936 CCGAGAGG--GGGG-CTTTCGCGCCCCAGGGG-TTC-GCCCCG-CACCTTT-CCACCCTTTGTGTATCTT-CCACTGTTGCTTTGGCGGGCCCCAGGGC--TCACGTCCCGG-CGCTGGCCC-CCT-ACAAAGGG-TTCGCGAG-CGCCCGCCGAAGGCCCATTATCAACCTG-TT-TATCAGTG-CAGTCTGAGTGTACG--GAAATGAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACACCTCTCAAGCAT-CGCTTGGTATTGGG-TGTTCGCCCCCCCG-TT--CGGG---GGGTGCACCTGAAATTCAGTGGCGGTCCCGGTGGACTTCAAGCGCAGTAAA---TAT--TTTGCTTTGGAAGC-TTTCCGCCGGTGGCCC-TGCCAATAAGCCTT Caloplaca_badioreagens_EF081036 CCGAGAGG--GGGG-CTCACGCGTCCCAGAGG-TTCTGCCCCG-TACCTTT-CTACCCTTTGTGTATATT-CCATTGTTGCTTTGGCGGGCTCCGGGGC--TCTCGTCCCGG-CGTTGGCCC-CTT-AAA--GGG--TCGCGAG-CGTCCGCCGAAGGCCCAT-AAAAATCCG-TTTTATTAGTG-CAGTCTGAGTATATG--AGAATTAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACACCTCTCAAGCAC-TGCTTGGTATTGGG-TGCTCGCCC-TCCG-TTT-CGGG---GGGCGCGCCCGAAATTCAGTGGCGGTCCCGGCGGACTTCAAGCGCAGTAAA---TAT--TCCGCTTGGGAAGCCTTTC-GCCGGTGGCCC-AGCCAGTAAACCTT Caloplaca_badioreagens_EF081038 CCGAGAGG--GGGG-CTCACGCGCCCCAGGGG-TTCTGCCCCG-TACCTTT-CCACCCTTTGTGTATTTT-CCACTGTTGCTTTGGCGGGCTCCGGGGC--TCATGTCCCGG-CGCTGGTCC-CCT-ATTAGGGG-CCCGCGAG-CGCCCGCCGAAGGCCCATCAAAAACCTG-TT-TATCAGTG-CAGTCTGAGTATATG--AGAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACACCTCTCAAGCAA-TGCTTGGTATTGGG-TGCTCGCCC-TCCG-TTT-CGGG---GGGCGCGCCCGAAATTCAGTGGCGGTCCCGGTGGACTTCAAGCGCAGTAAA---TAT--TCCGCTTTGGAAGCCTTTC-GCCGGTGGCCC-AGCCAGTAAACCTT Caloplaca_badioreagens_EF081039 CCGAGAGG--GGGG-CTCACGCGCCCCAGGGG-TTCTGCCCCG-TACCTTT-CCACCCTTTGTGTATTTT-CCACTGTTGCTTTGGCGGGCTCCGGGGC--TCATGTCCCGG-CGCTGGTCC-CCT-ATTAGGGG-CCCGCGAG-CGCCCGCCGAAGGCCCATCAAAAACCTG-TT-TATCAGTG-CAGTCTGAGTATATG--AGAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACACCTTTCAAGCAC-TGCTTGGTATTGGG-TGCTCGCCC-TCCG-TTT-CGGG---GGGCGCGCCCGAAATTCAGTGGCGGTCCCGGCGGACTTCAAGCGCAGTAAA---TAT--TCCGCTTGGGAAGCCTTTC-GCCGGTGGCCC-AGCCAGTAAACCTT Caloplaca_badioreagens_EF081040 CCGAGAGG--GGGG-CTCACGCGCCCCAGGGG-TTCTGCCCCG-TACCTTT-CCATCCTTTGTGTATTTT-CCACTGTTGCTTTGGCGGGCTCCGGGGC--TCATGTCCCGG-CGCTGGTCC-CCT-ATTAGGGG-CCCGCGAG-CGCCCGTCGAAGGCCCATCAAAAACCTG-TT-TATCAGTG-CAGTCTGAGTATATG--AGAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGGCATGCCTGTTCGAGCGTCATT-ACACCTTTCAAGCAC-TGCTTGGTATTGGG-TGCTCGCCC-TCCG-TTT-CGGG---GGGCGCGCCCGAAATTCAGTGGCGGTCCCGGCGGACTTCAAGCGCAGTAAA---TAT--TCCGCTTGGGAAGCCTTTC-GCCGGTGGCCC-AGCCAGTAAAC--- Caloplaca_chalybaea_AY313970 CCGAGAG{AG}AGGGGGCCTCACGCGTCCCAGGGG-TTACGGCCCG-CACCTTT-CCACCCTTTGTGTATCTT-CCACTGTTGCTTTGGCGGGCCCCGGGGT--TCACGTCCCGGGCGCTGGTCC-CCT-ATAAAGGG-CCCGCGAG-CGCCCGCCGAAGGCCTATCAAAAATCTG-TT-TATCAGTG-AAGTCGGAGTATA-G--AAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACACCCCTCAAGCAC-TGCTTGGTATTGGG-TGGTCGTTC-TCC--TTTTTGGG--GGGACGCACCCTAAATT-AGTGGCGGTCCCGGTGGACTTCAAGCGCAGTAAA---TA---TCCGCTTTGGAAGCCTTTC-GCCGGTGGCTC-AGCCAGCAAACCTT Caloplaca_chalybaea_AY313971 CCGAGAGGAGGGGGCCTCACGCGTCCCAGGGG-TTACGCCCCG-CACCTTTTCCACCCTTTGTGTATCTT-CCACTGTTGCTTTGGCGGGCCCCGGGGT--TCACGTCCCGG-CGCTGGTCC-CCT-ATAAAGGG-CCCGCGAG-CGCCCGCCGAAGGCCTATCAAAAATCTG-TT-TATCAGTG-AAGTCGGAGTATATGT-AAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACACCCCTCAAGCAC-TGCTTGGTATTGGGGTGGTCGTTC-TCC--TTTTTGCGCGGGGACGCACCCTAAATTTAGTGGCGGTCCCGGTGGACTTCAAGCGCAGTAAA---TAT--TCCGCTTTGGAAGCCTTTC-GCCGGTGGCTC-AGCCAGCAAACCTT Caloplaca_chalybaea_AY313975 CCGAGAGG--GGGG-CTCACGCGTCCCAGGGG-TTATGCCCCG-CACCTTT-CCACCCTTTGTGTACCTT-CCACTGTTGCTTTGGCGGGCCCCGGGGT--TCACGTCCCGG-CGCTGGTCC-CCT-ATAAAGGG-CCCGCGAG-CGCCCGCCGAAGGCCTATCAAAAATCTG-TT-TATCAGTG-AAGTCGGAGTATATG--AAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACACCCCTCAAGCAC-TGCTTGGTATTGGG-TGGTCGTTC-TCC--TTTTTGGG--GGGACGCACCCTAAATTTAGTGGCGGTCCCGGTGGACTTCAAGCGCAGTAAA---TAT--TCCGCTTTGGAAGCCTTTC-GCCGGTGGCTC-AGCCAGCAAACCTT Caloplaca_chalybaea_EF093580 CCGAGAGG--GGGG-CTCACGCGTCCCAGGGG-TTATGCCCCG-TACCTTT-CCACCCTTTGTGTATCTT-CCACTGTTGCTTTGGCGGGCCCCGGGGC--TCACGTCCCGG-CGCTGGTCC-CCT-ATAAGGGG-CTCGCGAG-CGCCCGCCGAAGGCCTATCAAAATCCTG-TT-TATCAGTG-AAGTCGGAGTATATG--AAAATCTATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACACCTTTCAAGCAC-TGCTTGGTATTGGG-TGCTCGTTC-TCC--TTT-CGGG--GGGACGCACCCTAAATTCAGTGGCGGTCCCGGTGGACTTCAAGCGCAGTAAA---TAT--TCCGCTTTGGAAGCCTTTC-GCCGGTGGCCC-AGCCAGCAAA---- Caloplaca_concreticola_EU192151 CCGAGAGG--GGGG-CTTACGCGCCCCAGGGG-TTCTGCCCCGATACCTTT-CTACCCTTTGTGTATCTT-CCACTGTTGCTTTGGCGGGCCGCGGGGC--TCACGTCCCGG-CGCTGGTCC-GCT-AAAAAGGA-CCCGCGAG-CGCCCGCCGAAGGCCCAT-AAAAATCTG-TTTTATCAGTG-CAGTCTGAGTACATG--AGAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACACCCCTCAAGCAC-TGCTTGGTATTGGG-TGCTCGCCC-TCCG-TTT-CGGG---GGGCGCGCCCGAAATTCAGTGGCGGTCCTGGTGGACTTCAAGCGCAGTAAA---TAT--TTCGCTTTGGAAGCCTTTC-GCCGGTGGCCC-AGCCAGTAAACCTT Caloplaca_concreticola_EU192152 CCGAGAGG--GGGG-CTTACGCGCCCCAGGGG-TTCTGCCCCG-TACCTTT-CTACCCTTTGTGTATCTT-CCACTGTTGCTTTGGCGGGCCGCGGGGC--TCACGTCCCGG-CGCTGGTCC-GCT-AAAAAGGA-CCCGCGAG-CGCCCGCCGAAGGCCCAT-AAAAATCTG-TTTTATCAGTG-CAGTCTGAGTACATG--AGAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACACCCCTCAAGCAC-TGCTTGGTATTGGG-TGCTCGCCC-TCCG-TTT-CGGG---GGGCGCGCCCGAAATTCAGTGGCGGTCCTGGTGGACTTCAAGCGCAGTAAA---TAT--TTCGCTTTGGGAGCCTTTC-GCCGGTGGCCC-AGCCAGTAAACCTT Caloplaca_concreticola_EU192153 CCGAGAGG--GGGG-CTTACGCGCCCCAGGGG-TTCTGCCCCG-TACCTTT-CTACCCTTTGTGTATCTT-CCGCTGTTGCTTTGGCGGGCCGCGGGGC--TCACGTCCCGG-CGCTGGTCC-GCT-AAAAAGGA-CCCGCGAG-CGCCCGCCGAAGGCCCAT-AAAAATCTG-TTTTATCAGTG-CAGTCTGAGTACATG--AGAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACACCCCTCAAG{AG}A{AC}-TGCTTGGTATTGGG-TGCTCGCCC-TCCG-TTT-CGGG---GGGCGCGCCCGAAATTCAGTGGCGGTCCTGGTGGACTTCAAGCGCAGTAAA---TAT--TTCGCTTTGGGAGCCTTT{CT}-GCCGGTGGCCC-AGCCAGTAAACCTT Caloplaca_concreticola_EU192155 CCGAGAGG--GGGG-CTTACGCGCCCCAGGGG--TCTGCCCCG-TACCTTT-CTACCCTTTGTGTATCTT-CCACTGTTGCTTTGGCGGGCCGCGGGGC--TCACGTCCCGG-CGCTGGTCC-GCT-AAAAAGGA-CCCGCGAG-CGCCCGCCGAAGGCCCAT-AAAAATCTG-TTTTATCAGTG-CAGTCTGAGTACATG--AGAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACACCCCTCAAGCAC-TGCTTGGTATTGGG-TGCTCGCCC-TCCG-TTT-CGGG---GGGCGCGCCCGAAATTCAGTGGCGGTCCTGGTGGACTTCAAGCGCAGTAAA---TAT--TTCGCTTTGGGAGCCTTTC-GCCGGTGGCCC-AGCCAGTAAACCTT Caloplaca_demissa_AF353960 TCGAGAGG-GGGGGTCT--CGCGCCCCAGGGG-TTCTGCCCCG-CACCTTT-CCACCCTTTGTGTACCTTTCCATTGTTGCTTTGGCGGGCCCCGGGGC--TT---TCCCGG-CGCTGGTCC-CCT-CCTGGGGG-TTCGCGAG-CGCCCGTCAGAGACCCGTTAAAAATCTGGTTGTATCAGTG-CAGTCCGAATCAAAA--AGAACCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCACAGGG-CATGCCTGTTCGAGCGTCATTAACAACCCTCAAGC-CTTGCTTGGTACTGGG-TGCTCGCCC--CCGCTTT-CGGG---GAGCGCGCCCGAAATCCAGTGGCGGTCCAGGTGGACTTCAAGCGCAGTGAA-CG-ATTGTTCGCTTTGGAAGCCTTCT-GCCTGTGGCCTCAGCCAGCGAACCTT Caloplaca_demissa_AF353961 TCGAGAGG--GGGGTCT--CGCGCCCCAGGGG-TTCTGCCCCG-CACCTTT-CCACCCTTTGTGTACCTT-CCATTGTTGCTTTGGCGGGCCCCGGGGC--TT---TCCCGG-CGCTGGTCC-CCT-TCTGGGGG-TTCGCGAG-CGCCCGTCAGAGACCCGTTAAAAATCTG-TTTTATCAGTG-CAGTCCGAGTCGAAACAAAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGG-CATGCCTGTTCGAGCGTCATT-ACAACCCTCAAGC-CTTGCTTGGTACTGGG-TGCTCGCCC--CCGCTTT-CGGG---GAGCGCGCCCGAAATCTAGTGGCGGTCCAGGTGGACTTCAAGCGCAGCGAA-CT-ATTGTCCGCTTTGGAAGCCTTCT-GCCTGTGGCCT-CGCCAGCGAACCTG Caloplaca_diphyodes_JN641782 CCGAGAGG--GGGG-CTCACGCGCCCCAGGGG-TTCTGCCCCG-CACCTTT-CCACCCTTTGTGTATCTT-CCACTGTTGCTTTGGCGGGCTCCGGGGT--TTACGTCCCGG-CGCTGGCC--CTC-AACCAGGGGCTCGCGAG-CGCCCGCCGAAGGCCCATCAAAATTCTG-TT-TATCAGTG-CTGTCTGAGTATACG--AAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATTTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACACCC-TCAAGCGC-TGCTTGGTATTGGG-TGCTCGCCC-TCC--TTT-CGGG-GGGGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTGGACTTCAAGCGCAGTAAA---TAT--TCCGCTTTGGAAGC-TTTCCGCCGGCGGCCC-AGCCAGCAAACCTT Caloplaca_diphyodes_JN641783 CCGAGAGG--GGGG-CTCACGCGCCCCAGGGG-TTCTGCCCCG-CACCTTT-CCACCCTTTGTGTATCTT-CCACTGTTGCTTTGGCGGGCCCCGGGGC--TCATGTCCCGG-CGCTGGTC--CCT-AA-CGGGG-TTCGCGAG-CGCCCGCCGAAGGCCCATCAAAATCCTG-TT-TATCAGTG-CTGTCTGAGTGTACG--AAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACACCTCTCAAGCAC-TGCTTGGTATTGGG-TGCTCGCCC-TCC--TTC-CGGG--GGGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTGGACTTCAAGCGCAGTAAA---TAT--TCCGCTTTGGAAGC-CTTCCACCGGTGGCCC-AGCCAGCAAACCAA Caloplaca_diphyodes_JN641784 CCGAGAGG--GGGG-CTCACGCGCCCCAGGGG-TTCTGCCCCG-CACCTTT-CCACCCTTTGTGTATCTT-CCACTGTTGCTTTGGCGGGCCCCGGGGC--TCATGTCCCGG-CGCTGGCC--CCT-AA-CGGGG-TTCGCGAG-CGCCCGCCGAAGGCCCATCAAAATCCTG-TT-TATCAGTG-CTGTCTGAGTGTACG--AAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACACCTCTCAAGCAC-TGCTTGGTATTGGG-TGCTCGCCC-TCC--TTC-CGGG--GGGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTGGACTTCAAGCGCAGTAAA---TAT--TCCGCTTTGGAAGC-CTTCCACCGGTGGCCC-AGCCAGCAAACCAA Caloplaca_erodens_EF090921 CCGAGAGG--GGGG-CTCACGCGCCCCAGGGG-TTCTGCCCCG-CACCTTT-CCATCCTTTGTGTATTTT-CCACTGTTGCTTTGGCGGGCCCCGGGGC--TCACGTCCCGG-CGCTGGCTC-CCT-GCAGGGGG-TTCGCGAG-CGCCCGCCGAAGGCCCATCAAAAATCTG-TT-TATCAGTG-CAGTCTGAGTATATG--AAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACACCCCTCAAGCAC-TGCTTGGTATTGGG-TGCTCGCCC-TCCG-TTT-CGGG---GGGCGCGCCCGAAATTCAGTGGCGGTCCCGGCGGACTTCAAGCGCAGTAAA---TAT--TCCGCTTTGGAAGC-C------------------------------ Caloplaca_erodens_EF090922 CCGAGAGG--GGGG-CTCACGCGCCCCAGGGG-TTCTGCCCCG-CACCTTT-CCATCCTTTGTGTATTTT-CCACTGTTGCTTTGGCGGGCCCCGGGGC--TCACGTCCCGG-CGCTGGCTC-CCT-GCAGGGGG-TTCGCGAG-CGCCCGCCGAAGGCCCATCAAAAATCTG-TT-TATCAGTG-CAGTCTGAGTATATG--AAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACACCCCTCAAGCAC-TGCTTGGTATTGGG-TGGTCGCCC-TCCG-TTT-CGGG---GGGCGCGCCCGAAATTCAGTGGCGGTCCCGGCGGACTTCAAGCGCAGTAAA---TAT--TCCGCTTTGGAAGCCTTTC-GTCGGTGGCCC-AGCCAGCAAACT-- Caloplaca_erodens_EF090923 CCGAGAGG--GGGG-CTCACGCGCCCCAGGGG-TTCTGCCCCG-CACCTTT-CCATCCTTTGTGTATTTT-CCACTGTTGCTTTGGCGGGCCCCGGGGC--TCACGTCCCGG-CGCTGGCTC-CCT-GCAGGGGG-TTCGCGAG-CGCCCGCCGAAGGCCCATCAAAAATCTG-TT-TATCAGTG-CAGTCTGAGTATATG--AAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACACCCCTCAAGCACCTGCTTGGTATTGGG-TGGTCACCC-TCCG-TTT-CGGG---GGGCGCGCCCGAAATTCAGTGGCGGTCCCGGCGGACTTCAAGCGCAGTAAA---TAT--TCCGCTTTGGAAGCCTTTC-GTCGGTGGCCC-AGCCAGCAAACTAT Caloplaca_erodens_EF090924 CCGAGAGG--GGGG-CTCACGCGCCCCAGGGG-TTCTGCCCCG-CACCTTT-CCATCCTTTGTGTATTTT-CCACTGTTGCTTTGGCGGGCCCCGGGGC--TCACGTCCCGG-CGCTGGCTC-CCT-GCAGGGGG-TTCGCGAG-CGCCCGCCGAAGGCCCATCAAAAATCTG-TT-TATCAGTG-CAGTCTGAGTATATG--AAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACACCCCTCAAGCAC-TGCTTGGTATTGGGGTGGTCGCCC-TCCG-TTT-CGGG---GGGCGCGCCCGAAATTCAGTGGCGGTCCCGGCGGACTTCAAGCGCAGTAAA---TAT--TCCGCTTTGGAAGCCTTTC-GTCGGTGGCCC-AGCCAGCAAACTAT Caloplaca_molariformis_Kazakhstan CCGAGAGG--GGGG-TTTACGCGCCCCAGGGG-TTCTGCCCCG-CACCTTT-CTACCCTTTGTGTATTTT-CCACTGTTGCTTTGGCGGGTCCCGGGGT--TCACGTCCCGG-CGCTGGCCT-CCT-ACCCGGGG-TTTGCGAG-TGCCCGCCGAAGGCCCATCAAAATTCTG-TT-TATCAGTG-CCGTCTGAGTATACG--AAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACATCCCTCAAGCAC-TGCTTGGTACTGGG-TGCTCGCCC-TCCA-TTT-TGGG--GGGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTGGACTTCAAGCGCAGTAAA---TAT--TCCGCTTTGGAAGC-TTTCCGCCGGTGGCCC-AGCCAGCAAATCAT Caloplaca_molariformis_Slovakia CCGAGAGG--GGGG-TTTACGCGCCCCAGGGG-TTCTGCCCCG-CACCTTT-CTACCCTTTGTGTATTTT-CCACTGTTGCTTTGGCGGGTCCCGGGGT--TCACGTCCCGG-CGCTGGCCT-CCT-ACCCGGGG-TTTGCGAG-TGCCCGCCGAAGGCCCATCAAAATTCTG-TT-TATCAGTG-CCGTCTGAGTATACG--AAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACATCCCTCAAGCAC-TGCTTGGTACTGGG-TGCTCGCCC-TCCA-TTT-TGGG--GGGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTGGACTTCAAGCGCAGTAAA---TAT--TCCGCTTTGGAAGC-TTTCCGCCGGTGGCCC-AGCCAGC?AATCAT Caloplaca_molariformis_Turkey CCGAGAGG--GGGG-TTTACGCGCCCCAGGGG-TTCTGCCCCG-CACCTTT-CTACCCTTTGTGTATTTT-CCACTGTTGCTTTGGCGGGTCCCGGGGT--TCACGTCCCGG-CGCTGGCCT-CCT-ACCCGGGG-TTTGCGAG-TGCCCGCCGAAGGCCCATCAAAATTCTG-TT-TATCAGTG-CCGTCTGAGTATACG--AAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACATCCCTCAAGCAC-TGCTTGGTACTGGG-TGCTCGCCC-TCCA-TTT-TGGG--GGGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTGGACTTCAAGCGCAGTAAA---TAT--TCCGCTTTGGAAGC-TTTCCGCCGGTGGCCC-AGCCAGCAAATCAT Caloplaca_molariformis_Ukraine_1 CCGAGAGG--GGGG-TTTACGCGCCCCAGGGG-TTCTGCCCCG-CACCTTT-CTACCCTTTGTGTATTTT-CCACTGTTGCTTTGGCGGGTCCCGGGGT--TCACGTCCCGG-CGCTGGCCT-CCT-ACCCGGGG-TTTGCGAG-TGCCCGCCGAAGGCCCATCAAAATTCTG-TT-TATCAGTG-CCGTCTGAGTATACG--AAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACATCCCTCAAGCAC-TGCTTGGTACTGGG-TGCTCGCCC-TCCA-TTT-TGGG--GGGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTGGACTTCAAGCGCAGTAAA---TAT--TCCGCTTTGGAAGC-TTTCCGCCGGTGGCCC-AGCCA--------- Caloplaca_molariformis_Ukraine_2 CCGAGAGG--GGGG-TTTACGCGCCCCAGGGG-TTCTGCCCCG-CACCTTT-CTACCCTTTGTGTATTTT-CCACTGTTGCTTTGGCGGGTCCCGGGGT--TCACGTCCCGG-CGCTGGCCT-CCT-ACCCGGGG-TTTGCGAG-TGCCCGCCGAAGGCCCATCAAAATTCTG-TT-TATCAGTG-CCGTCTGAGTATACG--AAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACATCCCTCAAGCAC-TGCTTGGTACTGGG-TGCTCGCCC-TCCA-TTT-TGGG--GGGGCGCGCCCGAAATTCAGTGGCGGTCTCGGTGGACTTCAAGCGCAGTAAA---TAT--TCCGCTTTGGAAGC-TTTCCGCCGGTGGCCC-AGCCAGCAAATCAT Caloplaca_obscurella_AY313976 CCAAAAGA--AGGGCCTC-CGGGCCCTAGGGGGTTCC-CCCCG-CACCTTT-CCACCCTTTGTGAATCTT-CCACTGTTGCTTTGGCGGGCCCCGGGGCCTTT---TCCCGG-CGCTGGTCC-CCTCTTCGGGGT-CTCGCGAG-TGTCCGCCAGACGCCTATTTAAATCCTGCTT-TATCAATGAAAGTCTGAGTCTACGA-ATAATGAAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAACGCGATAGGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACAACCCTCAAGCAC-TGCTTGGTATTGGG-TGCTCGCGC-CCCGCATT-CGCG-GGGGGCGCGCCC-AAATGTAGTGGCGGTCCCGGCGGACTTCAAGCGCAGTAAATCTCAT---CCGCTTCGGAAGCCTTCC-GCCGGTGGCCC-TGCCATCAACCCCC Caloplaca_transcaspica_EU192156 CCGAGAGG--GGGG-CTCACGCGCCCCAGGGG-TTCTGCCCCG-CACCTTT-CCACCCTTTGTGTATCTT-CCACTGTTGCTTTGGCGGGTCCCGGGGC--TCACGTCCCGG-CGCCGGCTC-CCT-ACAAGGGG-CTCGTGAG-CGCCCGCCGAAGGCCCATCGAAAATCTG-TT-TATTAGTG-CAGTCTGAGTATATG--AAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACACCTCTCAAGCAC-{AT}GCTTGGTATTGGG-TGCTCGCTC-TCCC-TTT-CGGG-GGGGGCGCGCCCGAAATTCAGTGGCGGTCCCGGTGGACTTCAAGCGCAGTAAA---TAT--TCCGCTTTGGAAGCCTTCT-ACCGGTGGCCC-CGCCAGCAAACCTT Caloplaca_variabilis_AY233224 CCGAGAGG--GGGG-CT-ACGCGTCCCAGGGG-TTATGCCCCG-TACCTTT-CCACCCTTTGTGTATCTT-CCACTGTTGCTTTGGCGGGCCCCGGGGC--TCACGTCCCGG-CGCTGGTCC-CCT-ATAAGGGG-CTCGCGAG-GGCCTGCCGAAGGCCCATCAAAATCCTG-TT-TATCAGTG-AAGTCGGAGTATATG--AAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACACCCCTCAAGCAC-TGCTTGGTATTGGT-TGTTCGCCC--CCC-TTT-CGGG--AGGACGCACCCTAAATTCAGTGGCGGTCCCGGTGGACTTCAAGCGCAGTAAA---TAT--TCCGCTTTGGAAGCCTTTC-GCCGGCGGCCC-AGCCAGCAAACCCT Caloplaca_variabilis_AY313969 CCGAGAGG--GGGG-CTCACGCGCCCCAGGGG-TTCTGCCCCG-CACCTTT-CCACCCTTTGTGTATCTT-CCACTGTTGCTTTGGCGGGCCCCGGGGC--TCACGTCCCGG-CGCCGGCCC-CCT-ATA-GGGG-CCCGCGAG-CGCCCGCCGAAGGCCCATCGAAAATCTG-TTTTATCAGTG-CAGTCTGAGTATAAG--AAAATCA-TCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGG-CATGCCTGTTCGAGCGTCATT-ACACCCCTCAAGCAC-TGCTTGGTATTGGG-TGCTCGCCC-TTCC-TTT-CGGG--GGGGCGCGCCCGAAATTCAGTGGCGGTCCCGGTGGACTTCAAGCGCAGTAAA---TAT--TTCGCTTTGGAAGCCTTCC-GCCGGTGGCCC-CGCCAGCAAACCGT ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M16014] TITLE ITS_Caloplaca_interfulgens_group; LINK TAXA = Taxa4; DIMENSIONS NCHAR=525; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Caloplaca_aquensis_HQ699652 CTGAGAGAG--GGACCTCGCGTCCCTC-GGGGGGCTTCGGCCCTCCATCTCTTCAACCC-GTGCCTATAACCCTCTGTTGCTTTGGCGAGCGCCGGGGCGC-CCC-CCGC-CCCGGCCCTGACCC-TCGGGTCGGTGCGTTCTCGCCGGAGCCC----CCTAAGCATTCTGTTTGTTCAGTGACGTCCGAGTATT-ACCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCCTTT-CGCC--GGAGACGGCGTGCTCGAAAA-CTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-TCGCTTCGGAGGTTCTCGCCTG-TGACC-GGCCGT-AAACCCCCC Caloplaca_aquensis_HQ699656 CTGAGAGAG--GGACCTCGCGTCCCTC-GGGGGGCTTCGGCCCTCCATCTCTTCAACCC-GTGCCTATAACCCTCTGTTGCTTTGGCGAGCGCCGGGGCGC-CCC-CCGC-CCCGGCCCTGACCC-TCGGGTCGGTGCGTTCTCGCCGGAGCCC----CCTAAGCATTCTGTTTGTTCAGTGACGTCCGAGTATT-ACCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCCTTT-CGCC--GGAGACGGCGTGCTCGAAAA-CTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-TCGCTTCGGAGGTTCTCGCCTG-TGACC-GGCCGT-AAACCCCCC Caloplaca_borysthenica_HQ699649 CTGAGAGAG--GGACCTCGCGTCCCCC-GGGGGGCTTCGGCTCTCCACCTCTTCAACCC-GTGTTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCAC-CTCGGCCCTGACCC-TAGG-TCGGTGCGTTCTCGCCAGAGCCC----CC-AGCCATTCTGTTTATTCAGTGACGTCCGAGTATG-ATCAAAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCAAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAAGCTCTCGCCTG-TGGCC-AGCCGT-AAAGCCCCC Caloplaca_borysthenica_HQ699655 CTGAGAGAG--GGACCTCGCGTCCCCC-GGGGGGCTTCGGCTCTCCACCTCTTCAACCC-GTGTTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCAC-CTCGGCCCTGACCC-TAGG-TCGGTGCGTTCTCGCCAGAGCCC----CC-AGCCATTCTGTTTATTCAGTGACGTCCGAGTATG-ATCAAAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCAAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAAGCTCTCGCCTG-TGGCC-AGCCGT-AAAGCCCCC Caloplaca_crenulatella_HQ699628 CTGAGAGAG--GGACCTCGCGTCCCCC-GGGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGTTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGTGCCCTC-CCAC-CCCTGCCCTGACCC-TAGG-TCGGTGCGTTCTCGCCAGAGCCT----CC-AACCATTCTGTTTATTCAGTGACGTCCGAGTATT-ATTATAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-TGTGGTATTCCGAGGGGCATGCCTGTTCGAGCGT-ATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTTTT-CGCC--CGAGATGGCGTGCTCGAAAAATTAGTGGCGGTCCGGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTTCTCGCCTG-TGACT-AGCCGT-AAACCCCCC Caloplaca_crenulatella_s.lat._HQ699635 -------------------CGTCCCCC-GGGGGGCTTCGGCCTTTCACCTCTTCAACCC-GTGCTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGCGT-CTC-ACGCCTTCGGCCCTGACCC-CCGGGTCGGTGCGTTCTCGCCAGAGCCC----CCCAACCATTCTGTTTATTCAGTGACGTCCGAGTATA-ATCAAAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTCTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTA-GAGGTTCTCGCCTG-TGACT-AGCCGT-AAAACCCCC Caloplaca_crenulatella_s.lat._HQ699642 CTGAGAGAG--GGACCTCGTGTCCCCC-GGGGGGCTTCGACCCTCCACCTCTTCAACCC-GTGCTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGCGC-CTC-GCGC-CTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCTAAGCATTCTGTTTATTCAGTGACGTCCGAGTATT-ACCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTCTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTACGAGGTTCTCGCCTG-TGGCC-AGCCGT-AAAACCCCC Caloplaca_crenulatella_s.lat._HQ699645 CTGA-AGAG--GGACCTCGCGTCCCCC-GGGGGGCTTCGGCCCTCCACCTCTTC-ACCC-GTGTTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTCCCCAC-CTCGGCCCTGACCCGTAGG-TCGGTGCGTTCTCGCCAGAGCCT----CCTC-CCATTCTGTTTATTCAGTGACGTCCGAGTATG-ACCAAAATTC-AAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TCAGTGGCGGTCCAGGGAGACTTTCAAGCGCAGTA-AAAC-TTTTCCGCTTTCGAGGCTCTCACCTG-TGGCC-AGCCGT--AAGCCCCC Caloplaca_crenulatella_s.lat._HQ699654 CTGAGAGAG--GGACCTCGCGTCCCCC--GGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGCTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTC---------GGCCCTGACCC-TAGGGTCGCTGCGTTCTCGCCAGAGCCC----CCCAACCATTCTGTTTATTCAGTGACGTCCGAGTATG-ATCAAAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTCTT-CGCC--GGAGACGGCGTGCTCGAAAA-TCAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGCCTTCACCTG-TGGCC-AGCCGT-AAAGCCCCC Caloplaca_crenulatella_s.lat._HQ699658 CTGAGAGAG--GGACCTCGCGTCCCCC-GGGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGCTTATAAACCTCTGTTGCTA-GGCGATCGCCGGGGTGC-CTC-GCGC-CTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCCTACCATTCTGTTTATTCAGTGACGTCCGAGTATG-ATCAAAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTCTT-CGCC--GGAGACGGCGTGCTCGAAAA-TCAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGCTTTCACCTG-TGGCC-AGCCGT-AAAGCCCCC Caloplaca_diffusa_HQ699647 CTGAGAGGG--GGACTTCGCGTCCCCC-GGGGGGTTTCGGCCCTCCAACTCTTCAACCC-GTGCTTACACACCTCTGTTGCTTTGGCGAGCGCCGGGGCGT-CTC-ACGT-CTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCTAATCATTCTGTTTGTTCAGTGACGTCCGAGTATT-ATCG-AATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGCGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAATCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTTCCCGCTTTCGAGGTTCCCGCCTG-TGGCC-AGCCGTTAAACCCCCC Caloplaca_diffusa_HQ699648 CTGAGAGGG--GGACTTCGCGTCCCCC-GGGGGGTTTCGGCCCTCCAACTCTTCAACCC-GTGCTTACACACCTCTGTTGCTTTGGCGAGCGCCGGGGCGT-CTC-ACGT-CTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCTAATCATTCTGTTTGTTCAGTGACGTCCGAGTATT-ATCG-AATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGCGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAATCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTTCCCGCTTTCGAGGTTCCCGCCTG-TGGCC-AGCCGTTAAACCCCCC Caloplaca_erichansenii_HQ699638 CTGAGAGAG--GGACCTCGCGTCCCCC-GGGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGTTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGG{GT}GC-CTC-CCAC-CTCGGCCC{GT}GACCC-TAGG-TCGGTGCGTTCTCGCCAGAGCCC----CC-AACCATTCTGTTTATTCAGTGAAGTCCGA{AG}TATT-ATTATAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCGGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTTCTCGTCTG-TGATT-AGCCGTAAAAGCCCCC Caloplaca_ferrarii_s.lat._Czech_Republic CTGAGAGAGAGGGACCTCGCGTCCCC--GGGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGCTTACAAACCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCGC-CTCGGCCCCGACCC-TAGG-TCGGTGCGTTCTCGCCAGAGCCC----CCAAAGCATTCTGTTTATTCAGTGACGTCCGAGTATT-ACCACAAT---AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTCCGAGGTTCTCGCCTG-TGGCC-AGCCGT-AAACCCCCC Caloplaca_ferrarii_s.lat._Czech_Republic_2 CTGAGAGAG--GGACCTCGCGTCCCCC-GGGGGG-TACGGCCCTCCACCTCTTCAACCC-GTGTTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCAC-CTCGGCCCTGACCC-TAGG-TCGGTGCGTTCTCGCCAGAGCCC----CC-AACCATTCTGTTTATTCAGTGACGTCCGAGTATG-ATCAAAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTTTTACGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGCTCTCGCCTG-TGGCC-AGCCGT-AAAGCCCCC Caloplaca_ferrarii_s.lat._Czech_Republic_3 CTGAGAGAG--GGACCTCGCGTCCCCC-GGGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGTTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CC{AC}C-CTCGGCCCTGA{AC}CC-TAGGA--GGTGCGTTCTCGCCAGAACCC----CC-AACCATTCTGTTTATTC{AT}{CG}TGACGTCCGAGTATG-ATCAAAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTTTTACGCC--GGAAACGGCGTGCTC{AG}AAAA-TTAG{GT}GGCGGTCCAGGGA{AG}ACTT-CAAGCGCAGTA-AAAA-TTT-CCGCTTTC{AG}AGGCTCTCGCCTG-TGGCC-AGCCGT-AAAGCCCCC Caloplaca_ferrarii_s.lat._Czech_Republic_4 CTGAGAGAG--GGACCTCGCGTCCCCC-GGGGGGTTTCGGCCCTCCACCTCTTC-ACCC-GTGTTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCTC-CTCGGCCCTGACCC-TAGG-TCGGTGCGTTCTCGCCAGAGCCC----CC-AACCATTCTGTTTATTCAGTGACGTCCGAGTATG-ATCAAAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTTTTACGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGCTCTCGCCTG-TGGCC-AGCCGT-AAAGCCCCC Caloplaca_ferrarii_s.lat._HQ699636 CTGAGAGAG-GGGACCTCGCGTCCCCC-GGGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGTTTATAAACCTCCGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCAC-CTCGGCCCTGACCC--AGG-TCGGTGCGTTCTCGTCAGAGCCC----CC-AACTATTCTGTTTATTCAGTGACGTCCGAGTATGAATCAAAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTATT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGCTCTCACCTG-TGGCC-AGCCGT-AAAGCCCCC Caloplaca_ferrarii_s.lat._HQ699637 CTGAGAGAG-GGGACCTCGCGTCCCCC-GGGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGTTTATAAACCTCCGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCAC-CTCGGCCCTGACCC--AGG-TCGGTGCGTTCTCGTCAGAGCCC----CC-AACTATTCTGTTTATTCAGTGACGTCCGAGTATGAATCAAAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGCTCTCACCTG-TGGCC-AGCCGT-AAAGCCCCC Caloplaca_ferrarii_s.lat._HQ699643 CTGAGAGAG--GGACCTCGCGTCCCC---GGGGGCTTCGGCCTTCCACCTCTTCAACCC-GTGCTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCGC-CTCGGCCCCGACCC-TAGG-TCGGTGCGTTCTCGCCAGA-CCC----CCAAAGCATTCTGTTTATTTAGTGACGTCCGAGTATT-ACCACAAT---AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAA-CTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCCCAAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTT-TCGCCTG-TGGCC-AGCCGT-AAACCCCCC Caloplaca_ferrarii_s.lat._HQ699651 CTGAGAGAG--GGACCTCGCGTCCCC--GGGGGGCTTCGGCCCTCCACCTCCTCAACCC-GTGCTTATAACCCTCTGTTGCTTTGGCGAGCGTCGGGGTGC-CTC-CCGC-CCCGGCCCTGACCC-TAGG-TCGGTGCGTTCTCGCCAGAGCCC----CCAAAGCATTCTGTCTATTCAGTGACGTCCGAGTATA-ACCATAAT---AAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTCTTGAGCTTCT-CGCC--GGCGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTTCTCGCCTG-TGGCC-AGCCGT-AAACCCCCC Caloplaca_ferrarii_s.lat._HQ699653 CTGAGAGAG--GGACCTTGCGTCCCCC-GGGGGGCTTCGGCCCTCCACC-CTCCAACCC-GTGCTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCGC-CTCGGCCCCGACCCCTAGG-TCGGTGCGTTCTCGCCAGAGCCC----CCAAAGCATTCTGTTTATTTATCGACGTCCGAGTATT-ACCACAAT---AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-CGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTTGGCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTC-CCGCTTTCGAGGTTCTCGCCTG-TGGCT-AGCCGT-ACCCCCCCC Caloplaca_ferrarii_s.lat._HQ699657 CTGAGAGAG-GGGACCTCGCGTCCCCC-GGGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGTTTATAAACCTCCGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCAC-CTCGGCCCTGACCC-TAGG-TCGGTGCGTTCTCGCCAGAGCCC----CC-AACCATTCTGTTTATTCAGTGACGTCCGAGTATGAATCAAAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGCTCTCACCTG-TGGCC-AGCCGT-AAAGCCCCC Caloplaca_ferrarii_s.lat._HQ699662 CTGAGAGAGAGGGACCTCGCGTCCCC--GGGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGCTTACAAACCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCGC-CTCGGCCCCGACCC-TAGG-TCGGTGCGTTCTCGCCAGAGCCC----CCAAAGCATTCTGTTTATTCAGTGACGTCCGAGTATT-ACCACAAT---AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTTCTCGCCTG-TGGCC-AGCCGT-AACCCCCCC Caloplaca_interfulgens_Czech_Republic_1 CTGAGAGAG--GGACCTCGCGTCCCC--GGAGGGCTTCGGCTCTCTACCTCTTTAACCC-GTGTTTATAAATCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCGCCCCCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----TCTCAGCATTCTCTTTATTTAGTGACGTCCGAGTATT-ACCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCTAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTCCTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_interfulgens_Czech_Republic_2 CTGAGAGAG--GGACTTCGCGTCCCCG-GGGGGGCTTCGGCTCTCTACCTCTTTCACCC-GTGCTTATAAATCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCGC-CTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCTCAGCATTCTCTTTATTTAGTGACGTCCGAGTATC-ATCATAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGTATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGCCGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTCCTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_interfulgens_Czech_Republic_3 CTGAGAGAG--GGACCTCGCGTCCCC--GGGGGGCTTCGGCCCTCTATCTCTTTCACCC-GTGCTTATAAATCTCTGTTGCTTTGGCGAGCGCCGGGGTGT-CTC-CCGC-CTCGGCCCTGACCC-TAGGGTCGGGGCGTTCTCGCCAGAGCCC----CCTCAGCAATCTCTTTATTTAGTGGCGTCCGAGTATC-ATCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTCCTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_interfulgens_Czech_Republic_4 CTGAGAGAG--GGACCTCGCGTCCCC--GGGGGGCTTCGGCCCTCTATCTCTTTCACCC-GTGCTTATAAATCTCTGTTGCTTTGGCGAGCGCCGGGGTGT-CTC-CCGC-CTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCTCAGCAATCTCTTTATTTAGTGGCGTCCGAGTATC-ATCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTCCTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_interfulgens_Czech_Republic_5 CTGAGAGAG--GGACCTCGCGTCCCC--GGGGGGCTTCGGCCCTCTATCTCTTTCACCC-GTGCTTATAAATCTCTGTTGCTTTGGCGAGCGCCGGGGTGT-CTC-CCGC-CTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCTCAGCAATCTCTTTATTTAGTGGCGTCCGAGTATC-ATCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTCCTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_interfulgens_HQ699639 CTGAGAGAG--GGACCTCGCGTCCCC--GGGGGGCTTCGGCCTTCTATCTCTTTCACCC-GTGCTTATAAATCTCTGTTGCTTTGGCGAGCGCCGGGGTGTCTTC-CCGCACTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCTCAGCAATCTCTTTATTTAGTGACGTCCGAGTATC-ATCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTCCTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_interfulgens_HQ699640 CTGAGAGAG--GGACCTCGCGTCCCC--GGGGGGCTTCGGCCCT{CT}TATCTCTTTCACCC-GTGCTTATAAATCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCGC-CTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCTCAGCATTCTCTTTATTTAGTGACGTCCGAGTATC-ATCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTCCTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_interfulgens_Slovakia_1 CCGAGAGAG--GGGCCTCGCGTCCCT--GGGGGGCTTCGGCCCTCTATCTCTTTCACCC-GTGCTTATAAATCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCGC-TTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCTCAGCATTCTCCTTATTTAGTGACGTCCGAGTATC-ATCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTCCTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_interfulgens_Slovakia_2 CTGAGAGAG--GGACCTCGCGTCCCC--GGGGGGCTTCGGCCTTCTATCTCTTTCACCC-GTGCTTATAAATCTCTGTTGCTTTGGCGAGCGCCGGGGTGT-CTC-CCGCACTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCTCAGCAATCTCTTTATTTAGTGACGTCCGAGTATC-ATCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTGTTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTCTTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_interfulgens_Southern_Russia CTGAGAGAG--GGACCTCGCGTCCCC--GGAGGGCTTCGGCTCTCTACCTCTTTAACCC-GTGCTTATAAATCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CTC-CCGC-CCCGGCCCTGACCC-TAGGGTCGACGCGTTCTCGCCAGAGCCCGGGCCCTCAGCATTCTCTTTATTTAGTGACGTCCGAGTATC-ACCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTCCTCGCCTGGTGACC-AGCCGT-AAAACCCCC Caloplaca_interfulgens_Turkey_1 CTGAGAGAG--GGACCTCGCGTCCCC--GGGGGGCTTCGGCCCTCTATCTCTTGCACCC-GTGCTTATAAATCTCTGTTGCTTTGGCGAACGCCGGGGTGC-CTC-CCGC-CTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCTCAGCATTCTCTTTATTTAGTGACGTCCGAGTATC-ATCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTCCTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_interfulgens_Turkey_2 CTGAGAGAG--GGACCTCGCGTCCCC--GGGGGGCTTCGGCCCTCTATCTCTTCCACCC-GTGCTTATAAATCTCTGTTGCTTTGGCGAACGTCGGGGTGC-CTC-CCGC-CTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCTCAGCATTCTCTTTATTTAGTGACGTCCGAGTATC-ATCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTCCTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_interfulgens_Turkey_3 CTGAGAGAG--GGACCTCGCGTCCCC--GGGGGGCTTCGGCCCTCTATCTCTTTCACCC-GTGCTTATAAATCTCTGTTGCTTTGGCGAGCGCCGGGGTGT-CTC-CCGC-CTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----TCTCAGCAATCTCTTTATTTAGTGGCGTCCGAGTATC-ATCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTT-CCGCTTTCGAGGTCCTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_lactea_Greece CTGAGAGGG--GGACCTCGTGTCCCCC-GGGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGCTTATCAACCTCTGTTGCTTTGGCGAGCGCCGGGGCGC-CCC-CCGT-CTCGGCCCCGACCC-CAAAGTCGGTGCGTTCTCGCCAGAGCCC----CCTAAGCATTCTGTTTATTTAGTGACGTCCGAGTATT-ACCAAAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGTC--GGAGGCGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTTTTCGCTTTCGAGGTCCTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_lactea_HQ699644 CTGAGAGGG--GGACCTCGTGTCCCCC-GGGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGCTTATCAACCTCTGTTGCTTTGGCGAGCGCCGGGGCGC-CCC-CCGT-CTCGGCCCCGACCC-CAAAGTCGGTGCGTTCTCGCCAGAGCCC----CCTAAGCATTCTGTTTATTTAGTGACGTCCGAGTATT-ACCAAAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGTC--GGAGGCGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTTTTCGCTTTCGAGGTCCTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_lactea_Italy CTGAGAGGG--GGACCTCGTGTCCCCC-GGGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGCTTATCAACCTCTGTTGCTTTGGCGAGCGCCGGGGCGC-CCC-CCGT-CTCGGCCCCGACCC-CAAAGTCGGTGCGTTCTCGCCAGAGCCC----CCTAAGCATTCTGTTTATTTAGTGACGTCCGAGTATT-ACCAAAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGTC--GGAGGCGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTTTTCGCTTTCGAGGTCCTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_marmorata_HQ699627 CTGAGAGAG--GGACCTCGTGTCCCCC-GGGGGGTTTCGGCCCTCCACCTCTTCAACCC-GTGCTTATAGACCTCTGTTGCTTTGGCGAGCGCCGGGGCGC-CTC-CCGC-CTCGGCCCCGGCCC-CAAGGCCGGTGCGTTCTCGCCAGAGCCC----CCTAAGCATTCTGTTTATTCAGTGACGTCCGAGTATG-ACCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAG-TTC-CCGCTTTCGAGGTTCTCGCCTA-CGACC-GGCCGT-AAAACCCCC Caloplaca_marmorata_HQ699629 CTGAGAGAG--GGACCTCGCGTCCCCC-GGGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGCTTATAA{AC}TCTCTGTTGCTTTGGCGAGCGCCGGGGTGC-CCC-CCGC-CTCGGCCCCGACCC-TAGG-TCGGTGCGTTCTCGCCAGAGCCC----CC-AACCATTCTGTTTATTCAGTGACGTCCGAGTATT-ACCCTAATGT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCT-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCCTTT-CGCC--GGAGACGGCCTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTC-CCGCTTTCGAGGTTCTCGCCTG-CGACC-AGCCGTGAAACCCCCA Caloplaca_marmorata_HQ699630 CTGAGAGAG--GGACCTCG{GT}GTCCCCC-GGGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGCTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGCGC-CTC-CCGC-CTCGGCCC-GACCC-TAAGGCCGGTGCGTTCTCGCCAGAGCCC----CCT{AC}AGCATTCTGTTTATTCAGTGACGTCCGAGTATT-ACCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGC{CG}TGCTCGAAAA-TTAGTGGCGGTCCGGGGAGACTT-CAAGCGCAGTA-AAAC-TTC-CCGCTTTCGAGGTTCTCGCCTG-CGACC--GCCGTGAAACCCCCA Caloplaca_marmorata_HQ699631 -----------GGACCTCGCGTCCCCCCGGGGGGCTTCGGCCCTCCACCTCTTCAACCC-GTGCTTATAAACCTCTGTTGCTTTGGGGTGCGCCGGGGCGC-CTC-CCGC-CTCGGCCCCGACCC-TAAGGCCGGTGCGTTCTCGCCAGAGCCC----CCTCAGCATTCTGTTTATTCAGTGACGTCCGAGTATT-ACCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GTTTG-TATTGAGCTTTT-CGCC--GGAGACGGCCTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTC-CCGCTTTCGAGGTTCTCGCCTG-CGACC-AGCCGTGAAACCACCA Caloplaca_sp._Southern_Russia CTGAGAGAG--GGACCTCGCGTCCCCC-GGGGGGCTTCGGCCCCCCACCTCTTCAACCC-GTGTTTATAAACCTCTGTTGCTTCGGCGAGCGCCGGGGTGC-CTC-CCAC-CTCGGCCCTGACCC-TAGG-TCAGTGCGTTCTCGCCAGAGCCC----CC-AACCATTCTGTTTATTCAGTGACGTCCGAGTATG-ATCAAAATTT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTC-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AAAC-TTTTCCGCTTT-GAGGCTCTCGCCTG-TGGCC-AGCCGT-AAACCCCCC Caloplaca_tominii_HQ699625 CTGAGAGAG--GGACCTCGTGTCCCC--GGGGGGCTTCGGCCCCCTACCTCTTCAACCC-GTGCTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGTGT-CCC-CCGC-CTCGGCCCCGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCTCAGCATTCTCTTTATTTAGTGACGTCCGAGTAT--ATCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AATC-TTT-CCGCTTCCGAGGTCCTCGCCTG-TGACC-AGCCGT-AAACCCCCC Caloplaca_tominii_HQ699626 CTGAGAGAG--GGACCTCGTGTCCCC--GGGGGGCTTCGGCCCCCTACCTCTTCAACCC-GTGCTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGTGT-CTC-CCGC-CTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCTCAGCATTCTATTTATTCAGTGACGTCCGAGTAA--A{CT}CAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AATC-TTT-CCGCTTTCGAGGTCCTCGCCTG-TGATC-AGCCGT-AAACCCCCC Caloplaca_tominii_HQ699650 CTGAGAGAG--GGACCTCGTGTCCCC--GGGGGGCTTCGGCCCCCTACCTCTTTAACCC-GTGCTTATAAACCTCTGTTGCTTTGGCGAGCGCCGGGGTGT-CTC-CCGC-CTCGGCCCTGACCC-TAGGGTCGGTGCGTTCTCGCCAGAGCCC----CCTCAGAATTCTCTTTATTTAGTGACGTCCGAGTAT--ATCAAAATAT-AAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGAGCTTTT-CGCC--GGAGACGGCGTGCTCGAAAA-TTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTA-AATC-TTT-CCGCTTCCGAGGTCTTCGCCTG-TGATC-AGCCGT-AAACCCCCC Caloplaca_trachyphylla_EU639651 CTGAGAGAG--GGATCTTGCGTCCCCC-GGGGGGTTTCGGCCCTCTACCTCTTCAACCCTGTGTGTACCACTCTTTGTTGCTTTGGCGAGTGCCGGGGCTC-CT----GT-TCCAGCCCTGACCT-T-GG-TCAGCGAGCCCTCGCCAGAGGCC----CATTAAAATTCTGTTT-C-CAGGGTCGTCCGAGTAT--ACAAATTAAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-T-TGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTTT-GCTTGGTATTGGGCGCTC-CGC---GAGGA-GGCGTGCCCGAAAA-TTAGTGGCGGTCCGGGGAGACTT-CAAGCGCAGTA-AATC-TTT-CCGCTTTCGAGGTT-CTGCCTG-CGATCCGGCCATCAAACCTCCC Xanthoria_elegans_EU639642 CTAAGAGAG--GGATGACGCTTTCCCC-GGGGGGCTGCGCCCCTC-ACCTCTTCAACCCTGTGTCTACCAACCGCTGTTGCTTCGGCGAGCGTCGGGGCGT-CC--GCGC-CCCGGCCCCGGCTT-T-GG-TCGGTGAGCTCTCGCCTGAGGCC----TATCTTTATTCTGTTT-TGCAGTGACGTCCGAGAAT--ACCAATATAATCAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC-C-TGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTT-GCTTGGTATTGGGCTCTC-CGTCCGGGGGA-GGCGTGCCCGCAAA-CTAGTGGCGGTCCAGGGAGACTT-CAAGCGCAGTAGAATCATTT--CGCTTTCGAGGTG-TCGCCTG-TGGCCGGGCCGT-AAAACCCCC ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M16013] TITLE ITS_Caloplaca_crenularia_group; LINK TAXA = Taxa2; DIMENSIONS NCHAR=558; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Caloplaca_aff._crenularia_Canary_Islands CTGAAAGGGGGGCTTTCGCGCCCC---GGGG-CTC--TGCC---CCGTACCTTTCCACCCTATGC-GTACCTTCCACTGTTGCTTTGGCGGGCCTCCGGGCTTT-------CCCGGCGCTGGCTC-----------GGG-TCCGCGTGTGCTCGCCAGAGGCCC-ATTA-AAACCT-----GTTTTATCAGTGCAGTCTGAG-TATACATACAATCAA-GTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT-AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGT-ATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCCTCGCTTGGTATTGGGTCCTCGCCCCCTCGCTTCCAGGGGAGCG-CGCCCGAAATTTAGTGGCGGTCCAGGTAGACTTCAAGCGCAGTAAA-TCT-ATCCGCTTCCGAAGC--CTTCTGCCTGCGG-CCTCGCCAGTTGAACC----ATAAACTTTTCAC-GAA Caloplaca_ammiospila_EF643515 ATGAGAGGGGGGC-TTCGCGCTCCA-GGGGG-TT-ACTCCC----CGCACCTTTCCACCCTTTGTTGTACCTTCCA-TGTTGCTTTGGCGGGCCCCGGGGG-TTAAT---CCCTGGCGCTGG-TCCC-CTAA-TTGGGGGTTGGCGAGTGCCCGTCGAAGGCCC-ATC-AAAAA-TC---TTTTTTATCAGTGAAGTCCGAG-TACAAAACAAATCAA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT-AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTGGGA-ATTCCTAGGGGCATGCCTGTTCGAGCGTCATTAAACCCCTCAAGCTTTGCTTGGTATTGGGTGCTCGCCC-------CCCAAGGGCG---CACCCCAAATCTAGTGGCGGTCCAGGGAGACTTCAAGCGCAGTAAATTACAATTCGCTTTGGAAGCTTTTTCTGCCTGTGG-CCTCGCCAGC--AACCCCCCCAA-TCTTT-AACCAAA Caloplaca_ammiospila_EF643516 ATGAGAGGGGGGC-TTCGCGCTCCAGGGGGG-TT-ACTCCC----CGCACCTTTCCACCCTTTGTTGTACCTTCCA-TGTTGCTTTGGCGGGCCCCGGGGGGTTAAT---CCCTGGCGCTGG-TCCC-CTAA-CTGGGGGTTGGCGAGTGCCCGTCGAAGGCCC-ATC-AAAAA-TC-TTTTTTTTATCAGTGAAGTCCGAG-TACAAAACAAATCAA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT-AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTGGGA-ATTCCTAGGGGCATGCCTGTTCGAGCGTCATTAAACCCCTCAAGCTTTGCTTGGTATTGGGTGCTCGCCC-------CCCAAGGGCG---CACCCCAAATCTAGTGGCGGTCCAGGGAGACTTCGAGCGCAGTAAATTACAATTCGCTTTGGAAGC-TTTTCTGCCTGTGG-CCTCGCCAGC--AACCCCCCCAA-TCTTT-AACCAAA Caloplaca_cerina_EU365861 TTGAGAGGGGAGC-CTCGCGCTCCA--GGGGCCTCG-TGCC---CCGCACCTTTCCACCCTTTGT-GTATCTTCCACTGTTGCTTTGGCGGGCCCCGGG-GCTTA---CCCCTCGGCGCCGGCCCC-CTGCGAAGGGGG-CTCGCGAGCGCCCGCCGGAGGCCC-ATCC-AAACCT-----GCTGTATCAGTGCCGTCTGAG-TATACGAGTAATCAA-TCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT-AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGT-ATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCTTGGTATTGGGCGTCCGCCCCCCGGGATCGGGGGGCG---CGCCCGAAATTCAGTGGCGGTCCAGGTAGACTTCAAGCGCAGTAAACTTTGGTTCGCTTTGGAAGC--CTTCTGCCTGCGG-CCCCGCCAGCC-AACG----ATCACCCCCAATC-ATT Caloplaca_coralliza_FJ866794 ATGAGAGGGGGGC-TTCGCGCTCCA-GGGGG-TT-AC-GCC---CCGCACCTTTCCACCCTTTGT-ATATCTTCCACCGTTGCTTTGGCGGGCCTCGGGAG-----TTACTCCCGGCGCTGG-TCCC-CTGA--CGGGGTCTCGCGAGTGCCCGTCGAAGGCCC--TT-CAAAAACC----TTTTTATCAGTGATGTCCGAG-TCTAAAACAAATCAA-TCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT-AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTGGGATATTCCTAGGGGCATGCCTGTTCGAGCGTCATTAAACCCCTCAAGCATTGCTTGGTATTGGGTGCCCGCC--------CCCAAGGGCG---CACCCCAAATCTAGTGGCGGTCCAGGGAGACTTCAAGCGCAGTAAATTACCATTCGCTTTGGAAGC---TTCTACCTGTGG-CCCCGCCAGC--AACC-CCCCA----TTCTTACCAAA Caloplaca_coralliza_FJ866796 ATGAGAGGGGGGC-TTCGCGCTCCA-GGGGG-TT-AC-GCC---TCGCACCTTTCCACCCTTTGT-ATATCTTCCACTGTTGCTTTGGCGGGCCCCGGGAG-----TTACTCCCGGCGCTGG-TCCC-CTAA--CGGGGTCTCGCGAGTGCCCGTCGAAGGCCC--TT-CAAAAACC----TTTTTATCAGTGAAGTCCGAGTTCTAAAACAAATCAA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT-AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTGGGATATTCCTAGGGGCATGCCTGTTCGAGCGTCATTAAACCCCTCAAGCATTGCTTGGTATTGGGTGCCCGCC--------CCCAAGGACG---CACCCCAAATCTAGTGGCGGTCCAGGGAGACTTCAAGCGCAGTAAATTACCATTCGCTTTGGAAGC---TTCTACCTGTGG-CCCCGCCAGC--AACC-CCCCA---TTTTTTACCAAA Caloplaca_crenularia_AF353965 ATGAGAGGGGGGC-TTCGCGCTCCAGGGGGG-TT-AC-CCC--CCCGAACCTTTCCACCCTTTGT-ATATCTTCCACTGTTGCTTTGGCGGGCCCTGGG-G-----TTACTCCCGGCGCTGG-TCCC-CTAA--CAGGGCCTCGCGAGTGCCCGTCGAAGGCCC--TT-CAAAAACC----TTCTTATCAGTGAAGTCCGAG-TTTAAAACAAATCAG-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT-AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTGGG-TATTCCTAGGGGCATGCCTGTTCGAGCGTCATTAAACCCCTCAAGCATTGCTTGGTATTGGGTGCTCGCC------TCCCCCGGGGCG---CACCCCAAATCCAGTGGCGGTCCAGGGAGACTTCAAGCGCAGTAAATTACCATTCGCTTTGGAAGC---TTCTCCCTGTGG-CCCCGCCAGC--AAC---CCCA--TCTTTTTACCAAA Caloplaca_crenularia_Bulgaria ---------------------------------------------------------------------------------------GCGGGCCCCGGG-G-----TCACTCCCGGCGCTGG-TCCCACTAA--CGGGGCCTCGCGAGTGCCCGTCGAAGGCCC--TT-CAAAACACC---TTTTTATCAGTGAAGTCCGAG-TCCAAAACAAATCAA-TCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTGGGACATTCCTAGGGGCATGCCTGTTCGAGCGTCATTAAACCCCTCAAGCATTGCTTGGTATTGGGTGCTCGCC------TCCCTCGGGGCG---CACCCCAAATCCAGTGGCGGTCCAGGGAGACTTCAAGCGCAGTAAATTACCATTCGCTTTGGAAGC---TTCTACCTGTGG-TCCCGCCAGC--AAC---CCCA--TCTTTTTACCAAA Caloplaca_crenularia_Crete_1 ATGAGAGGGGGGC-TTC-CGCTCCAGGGGGG--TCAC-ACC---CCGAACCTTTCCACCCTTTGT-TCATCTTCCA-TGTTGCTTTGGCGGGCCCCAGGGG-C-ATTAGCTCCTGGCGCTGG-TCCC-CTAAACCGGAGCCTGGCGAGTGCCCGTCGACGGCCC-ATTT-AAAAAC-----TTTTTATCAGTGAAGTCCGAG-CATGAAACAAATTAT-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT-AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTGGGA-ATTCCTAGGGGCATGCCTGTTCGAGCGTCATTAAACCCCTCAAGCATTGCTTGGTATTGGG{GT}GCCCGCCCCC-----CTAAAGAGCG---CACCCTAAATTTAGTGG-GGTCCAGGGAGACTTCAAGCGCAGTAAATTACAATCC{CG}CTTTGGAAGC--TTTCTACCTGTGG-CCCCGCCAAT--AACCCCCCAA---TTTTTGACCAAA Caloplaca_crenularia_Crete_2 ATGAGAGGGGGGC-TTCGCGCTCCAGGGGGG-TT-AT-ACCCCCCCGCACCTTTCCACCCTTTGT-ATATCTTCCACTGTTGCTTTGGCGGGCCCCGGG-G-----TCACTCCCGGCGCTGG-TCCC-TTAA--CGGGGTCTCGCGAGTGCCCGTCGAAGGCCC--TT-CAAAAACC----TTTTTATCAGTGAAGTCCGAG-TCTAAAATAAATCAA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT-AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTGGGACATTCCTAGGGGCATGCCTGTTCGAGCGTCATTAAACCCCTCAAGCATTGCTTGGTATTGGGTGCCCGCCCCCC---CCCCCGGGGCG---CACCCCAAATCCAGTGG------------------------------------------------------------------------------------------------------ Caloplaca_crenularia_EF643511 ATGAGAGGGGGGC-TTCGCGCTCCAGGGGGG-TT-AC-CCC--CCCGAACCTTTCCACCCTTTGT-ATATCTTCCACTGTTGCTTTGGCGGGCCCCGGG-G-----TTACTCCCGGCGCTGG-TCCC-CTAA--CAGGGCCTCGCGAGTGCCCGTCGAAGGCCC--TT-CAAAAACC----TTCTTATCAGTGAAGTCCGAG-TTTAAAACAAATCAG-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT-AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTGGGACATTCCTAGGGGCATGCCTGTTCGAGCGTCATTAAACCCCTCAAGCATTGCTTGGTATTGGGTGCTCGCC------TCCCCCGGGGCG---CACCCCAAATCCAGTGGCGGTCCAGGGAGACTTCAAGCGCAGTAAATTACCATTCGCTTTGGAAGC---TTCTCCCTGTGG-CCCCGCCAGC--AAC---CCCA--TCTTTTTACCAAA Caloplaca_crenularia_EF643512 ATGAGAGGGGGGC-TTCGCGCTCCAGGGGGG-TT-AC-CCC--CCCGAACCTTTCCACCCTTTGT-ATATCTTCCACTGTTGCTTTGGCGGGCCCCGGG-G-----TTACTCCCGGCGCTGG-TCCC-CTAA--CGGGGCCTCGCGAGTGCCCGTCGAAGGCCC--TT-CAAAAACC-----TTTTATCAGTGAAGTCCGAG-TCCAAAACAAATCAA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT-AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTGGGATATTCCTAGGGGCATGCCTGTTCGAGCGTCATTAAACCCCTCAAGCATTGCTTGGTATTGGGTGCTCGCC------TCCCCCGGGGCG---CACCCCAAATCCAGTGGCGGTCCAGGGAGACTTCAAGCGCAGTAAATTACCATTCGCTTTGGAAGC---TT?TCCCTGTGG-CCCCGCCAGC--AAC---CCCATTTTTTTTTACCAAA Caloplaca_crenularia_Hungary ATGAGAGGGGGGC-TTCGCGCTCCAGGGGGG-TT-AT-ACC-CCCCGCACCTTTCCACCCTTTGT-ATATCTTCCACTGTTGCTTTGGCGGGCCCCGGG-G-----TCACTCCCGGCGCTGG-TCCC-TTAA--CGGGGTCTCGCGAGTGCCCGTCGAAGGCCC--TT-CAAAAACC----TTTTCATCAGTGAAGTCCGAG-TCTAAAATAAATCAA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT-AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTGGGACATTCCTAGGGGCATGCCTGTTCGAGCGTCATTAAACCCCTCAAGCATTGCTTGGTATTGGGTGCCCGCC------TCCCCCGGGGCG---CACCCCAAATTCAGTGGCGGTCCAGGGAGACTTCAAGCGCAGTAAATTACCATTCGCTTTGGAAGC---TTCTCCCTGTGG-CCCCGCCAGC--AAC---CCCA--TCTTTTTGCCAAA Caloplaca_crenularia_Iran ATGAGAGGGGGGC-TTCGCGCTCCAGGGGGG-TT-AC-CCC--CCCGCACCTTTCCACCCTTTGT-ATATCTTCCACTGTTGCTTTGGCGGGCCCCGGG-G-----TCACTCCCGGCGCTGG-TCCC-CTAA--CGGGGCCTCGCGAGTGCCCGTCGAAGGCCC--TT-CAAAAACC----TTTTTATCAGTGAAGTCCGAG-TCCAAAACAAATCAA-TCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT-AAGTAATGCGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTGGGACATTCCTAGGGGCATGCCTGTTCGAGCGTCATTAAACCCCTCAAGCATTGCTTGGTATTGGGTGCTCGCC------TCCCCCGGGGCG---CACCCCAAATCCAGTGGCGGTCCAGGGAGACTTCAAGCGCAGTAAATTACCATTCGCTTTGGAAGC---TTCTACCTGTGG-CCCCGCCAGC--AAC---CCCA--TCTTTTTACCAAA Caloplaca_crenularia_Spain ATGAGAGGGGGGC-TTCGCGCTCCA--GGGG-TTTAC-ACC---CCGAACCTTTCCACCCTTTGT-GTATCTTCCA-TGTTGCTTTGGCGGGCCCCAGGGG-C-AGTAGCTCCTGGCGCTGG-TCCC-CTAAACGGGGGTCTGACGAGTGCCCGTCGAAGGCCC-ATTT-AAAACC-----TTTTAATCCGTGAAGTCCGAG-CACAAAACAAATCAA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAAAACGCAGCGAAATGCGAT-AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTGGGA-ATTCCTAGGGGCATGCCTGTTCGAGCGTCATTAAACCCCTCAAGCATTGCTTGGTATTGGGTGCCCGCCCCCCC-CCCCCAAGGGCG---CACCCCAAATTCAGTGGCGGTCCAGGG-GACTTCAAGCGCAGTAAATTACAATCCGCTTTGGAAGC-TTTTCTACCTGTGG-CCCCGCCAG---------------------------- Caloplaca_crenularia_Turkey ATGAGAGGGGGGC-TTCGCGCTCCAGGGGGG-TT-AT-ACC-CCCCGCACCTTTCCACCCTTTGT-ATATCTTCCACTGTTGCTTTGGCGGGCCCCGGG-G-----TCACTCCCGGCGCTGG-TCCC-CTAA--CGGGGCCTCGCGAGTGCCCGTCGAAGGCCC--TT-CAAAAACC----TTTTTATCACTGAAGTCCGAG-TCCAAAACAAATCAA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT-AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTGGGACATTCCTAGGGGCATGCCTGTTCGAGCGTCATTAAACCCCTCAAGCATTGCTTGGTATTGGGTGCTCGCC------TCCCCCGGGGCG---CACCCCAAATCCAGTGGCGGTCCAGGGAGACTTCAAGCGCAGTAAATTACCATTCGCTTTTGAAGC---TTCTACCTGTGG-CCCCGCCAGC--AAC---CCCA--TCTTTT------- Caloplaca_ferruginea_FJ866808 ATGAGAGGGGGGC-TTCGCGCTCCA-GGGGG--TCAC-ACC--CCCGCACCTTTCCACCCTTTGT-GTACCTTCCA-TGTTGCTTTGGCGGGCCCCGGG-GTCTTTTAGCCCCTGGCGCTGG-CCCC-CGAA--TAGGGGCTGGCGAGCGCCCGTCGAAGGCCC-A-T-CAAAATC-----TTCTTATCAGTGCTGTCTGAG-TACAAAACAAATCAA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT-AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTGGGA-ATTCCTAGGGGCATGCCTGTTCGAGCGTCATTAAACCCCTCAAGCATTGCTTGGTATTGGGTGCTCGCCCC------CCCAAGGGCG---CACCCCAAATTCAGTGGCGGTCCAGGGAGACTTCAAGCGCAGTAAATTACAATTCGCTTTGGAAGC---TTCTGCCTGTGG-CCCCGCCAGC--AACCCCCCCA---TATTTTACCAAA Caloplaca_furfuracea_Austria ATGAGAGGGGGGC-TTCGCGCTCCA-GGGGG-TT-AC-ACC---CCGCACCTTTCCACCCTTTGTTGTACCTTCCA-TGTTGCTTTGGCGGGCCCCGGGGG-CCAATCACCCCTGGCGCTGG-TCCC-CCTAATTGGGGTTTGGCGAGCGCCCGTCGAAGGCCC-ATC-AAAAA-CC----TTTTTATCAGTGAAGTCCGAG-TACAAAACAAAACAA-TT-AAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT-AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTGGGA-ATTCCTAGGGGCATGCCTGTTCGAGCGTCATTAAACTCCTCAAGCTTTGCTTGGTATTGGGTGCTCGCCC-------CCCGAGGGCG---CACCCCAAATCTAGTGGCAGTCCAGGGAGACTTCAAGCGCAGTAAATTACCATCCGCTTTGGAAGC--TTTCTGCCTGTGA-CCCCGCCAGC--AACC-CCCCAA-TC----------- Caloplaca_furfuracea_FJ866811 ATGAGAGGGGGGC-TTCGCGCTCCA--GGGG-TT-AC-GCC---CCGCACCTTTCCACCCTTTGTTGTACCTTCCA-TGTTGCTTTGGCGGGCCCCAGGGG-ATAATCACCTCTGGCGCTGG-TCCC-CTAA-TCGGGGTTTAGCGAGTGCCCGTCGAAGGCCC-ATT-AAAAA-TC----TTTTTATCAGTGAAGTCTGAG-TACAAAACAAATCAA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT-AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTGGGA-ATTCCTAGGGGCATGCCTGTTCGAGCGTCATTAAATCCCTCAAGCTTTGCTTGGTATTAGGTGTTCGCCC-------TCCAAGGGCG---CACCCCAAATCTAGTGGCGGTCCAGGGAGACTTCAAGCGCAGTAAATTACAATCCGCTTTGGAAGC--TTTCTGCCTGTGG-CCCCGCCAGC--AATC-CCCCCA-TCTTT-AACCAAA Caloplaca_furfuracea_FJ866813 ATGAGAGGGGGGC-TTCGCGCTCCA--GGGG-TT-AC-GCC---CCGCACCTTTCCACCCTTTGTTGTATCTTCCA-TGTTGCTTTGGCGGGCCCCAGGGG-ATAATCACCTCTGGCGCTGG-TCCC-CTAA-TCGGGGTTTAGCGAGTGCCCGTCGAAGGCCC-ATT-AAAAA-TC----TTTTTATCAGTGAAGTCTGAG-TACAAAACAAATCAA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT-AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTGGGA-ATTCCTAGGGGCATGCCTGTTCGAGCGTCATTAAATCCCTCAAGCTTTGCTTGGTATTAGGTGTTCGCCC-------TCCAAGGGCG---CACCCCAAATCTAGTGGCGGTCCAGGGAGACTTCAAGCGCAGTAAATTACAATCCGCTTTGGAAGC--TTTCTGCCTGTGG-CCCCGCCAGC--AATC-CCCCCG-TCTTT-AACCAAA Caloplaca_fuscorufa_EF643513 ATGAGAGGGGGGC-TTCGCGCTCCA--GGGG-TTCAC-GCC---CCGCACCTTTCCACCCTGTGT-ATATTTCCCACTGTTGCTTTGGCAGGCCCCCGGGGTTT-----CCCCCGGCGCCGGCTCCC-CTAA-ACCGGGGTTGGCGTGTGCCTGCCAGAGGCCC-ACCTCAAA--TCAATTGTTATATCAGTGTAGTCTGAG-TTGACGAGAAATCAA-ATAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT-AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGAAATTCCGAAGGGCATGCCTGTTCGAGCGTCATTAAACCCCTCAAGCTTTGCTTGGTCTTGGGTGATCGCGGCCCCTAACACAGGGGCGCGACGCCCCAAATTCAGTGGCGGTCCAGGGAGACTTCAAGCGCAGTAA--TACCCCTCGCTTTGGAAGC---TTCTGCCTGCGA-TTCGGCCAGC--AACC-TCTGTA-TGTCC-AAC-GAA Caloplaca_fuscorufa_EF643514 ATGAGAGGGGGGC-TTCGCGCTCCA--GGGG-TTCAC-GCC---CCGCACCTTTCCACCCTGTGT-ATATTTCCCACTGTTGCTTTGGCAGGCCCCCGGGGTTT-----CCCCCGGCGCCGGCTCCC-CTAA-ACCGGGGTTGGCGTGTGCCTGCCAGAGGCCC-ACCTCAAA--TCAATTGTTATATCAGTGTAGTCTGAG-TTGACGAGAAATCAA-ATAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT-AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGAAATTCCGAAGGGCATGCCTGTTCGAGCGTCATTAAACCCCTCAAGCTTTGCTTGGTCTTGGGTGATCGCGGCCCCTAACACAGGGGCGCGACGCCCCAAATTCAGTGGCGGTCCAGGGAGACTTCAAGCGCAGTAA--TACCCCTCGCTTTGGAAGC---TTCTGCCTGCGA-TTCGGCCAGC--AACC-TCTGTA-TGTCC-AAC-GAA Caloplaca_fuscorufa_Ukraine ATGAGAGGGGGGC-TTCGCGCTCCA--GGGG-TTCAC-GCC---CCGCACCTTTCCACCCTGTGT-ATATTTCCCACTGTTGCTTTGGCAGGCCCCCGGGGTTT-----CCCCCGGCGCCGGCTCCC-CTAA-ACCGGGGTTGGCGTGTGCCTGCCAGAGGCCC-ACCTCAAA--TCAATTGTTATATCAGTGTAGTCTGAG-TTGACGAGAAATCAA-ATAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT-AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGAAATTCCGAAGGGCATGCCTGTTCGAGCGTCATTAAACCCCTCAAGCTTTGCTTGGTCTTGGGTGATCGCGGCCCCTAACACAGGGGCGCGACGCCCCAAATTCAGTGGCGGTCCAGGGAGACTTCAAGCGCAGTAA--TACCCCTCGCTTTGGAAGC---TTCTGCCTGCGAATTCGGCCAGC--AACC-TCTGTA-TGTCC-AAC-GAA Caloplaca_herbidella_FJ866799 ATGAGAGGGGGGC-TTCGCGCTCCA-GGGGG-TT-AC-GCC---CCGCACCTTTCCACCCTTTGT-ATATCTTCCACTGTTGCTTTGGCGGGCCCCGGG-G-----TCACTCCCGGCGCTGG-TCCC-CCAA--CGGGGTCTCGCGAGTGCCCGTCGAAGGCCC--TT-CAAAAACC----TTTTTATCAGTGAAGTCTGAG-TCTAAAACAAATTAA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT-AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTGGGATATTCCTAGGGGCATGCCTGTTCGAGCGTCATTAAACCCCTCAAGCTTTGCTTGGTATTGGGTGCTCGCC-------CCCTAAGGGCG---CACCCCAAATCTAGTGGCGGTCCAGGGAGACTTCAAGCGCAGTAAATTACCATTCGCTTTGGAAGG---TTCTGCCTGTGG-CCCCGCCAGC--AAC---CACA---TATTTTACCAAA Caloplaca_herbidella_FJ866805 ATGAGAGGGGGGC-TTCGCGCTCCA-GGGGG-TT-AC-GCC---CCGCACCTTTCCACCCTTTGT-ATATCTTCCACTGTTGCTTTGGCGGGCCCCGGG-G-----TCACTCCCGGCGCTGG-TCCC-CCAA--CGGGGTCTCGCGAGTGCCCGTCGAAGGCCC--TT-CAAAAACC----TTTTTATCAGTGAAGTCTGAG-TCTAAAACAAATTAA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT-AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTGGGATATTCCTAGGGGCATGCCTGTTCGAGCGTCATTAAACCCCTCAAGCTTTGCTTGGTATTGGGTGCTCGCC-------CCCTAAGGGCG---CACCCCAAATCTAGTGGCGGTCCAGGGAGACTTCAAGCGCAGTAAATTACCATTCGCTTTGGAAGT---TTCTGCCTGTGG-CCCCGCCAGC--AAC---CACA---TATTTTACCAAA Caloplaca_herbidella_FJ866807 ATGAGAGGGGGGC-TTCGCGCTCCA-GGGGG-TT-AC-GCC---CCGCACCTTTCCACCCTTTGT-ATATCTTCCACTGTTGCTTTGGCGGGCCCCGGG-G-----TCACTCCCGGCGCTGG-TCCC-CCAA--CGGGGTCTCGCGAGTGCCCGTCGAAGGCCC--TT-CAAAAACC----TTTTTATCAGTGAAGTCTGAG-TCTAAAACAAATTAA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT-AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTGGGATATTCCTAGGGGCATGCCTGTTCGAGCGTCATTAAACCCCTCAAGCTTTGCTTGGTATTGGGTGCTCGCC-------CCCTAAGGGCG---CACCCCAAATCTAGTGGCGGTCCAGGGAGACTTCAAGCGCAGTAAATTACCATTCGCTTTGGAAG?---TTCTGCCTGTGG-CCCCGCCAGC--AAC---CACA---TATTTTACCAAA Caloplaca_herbidella_Turkey ATGAGAGGGGGGC-TTCGCGCTCCA-GGGGG-TT-AC-GCC---CCGCACCTTTCCACCCTTTGT-ATATCTTCCACTGTTGCTTTGGCGGGCCCCGGG-G-----TCACTCCCGGCGCTGG-TCCC-CCAA--CGGGGTCTCGCGAGTGCCCGTCGAAGGCCC--TT-CAAAAACC----TTTTTATCAGTGAAGTCTGAG-TCTAAAACAAATTAA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT-AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTGGGATATTCCTAGGGGCATGCCTGTTCGAGCGTCATTAAACCCCTCAAGCTTTGCTTGGTATTGGGTGCTCGCC-------CCCTAAGGGCG---CACCCCAAATCTAGTGGCGGTCCAGGGAGACTTCAAGCGCAGTAAATTACCATTCG-TTTGGAAGT---TTCTGCCTGTGG-CCCCGCCAGC--AAC---CACA---T----------A Caloplaca_scabrosa_Czech_Republic ATGAGAGGGGGGC-TTCGCGCTCCA-GGGGG-TT-ACTCCC----CGCACCTTTCCACCCTTTGTTGTACCTTCCA-CGTTGCTTTGGCGGGCCCCGGGGG-CCAATCACCCCTGGCGCTGG-TCCC-CTAA-TTGGGGTCTGGCGAGTGCCCGTCGAAGGCCC-ATT-AAAAC-CC---TTTTTAATCAGTGAAGTCCGAG-TACAAAACAAATCAATTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT-AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAAC-CACATTGCGCCCTTGGGA-ATTCCTAGGGGCATGCCTGTTCGAGCGTCATTAAACCCCTCAAGCTTTGCTTGGTATTGGGTGCTCGCC--------CCCAAGGGCG---CACCCCAAATCTAGTGGCGGTCCAGGGAGACTTCAAGCGCAGCAAATTACAATCCGCTTTGGAAGC-TTTTCTGCCTGTGG-CCCCGCCAGC--AACC-CCCCAA-TATTT-AACCAAA Caloplaca_sp._aff._scabrosa_Ukraine_1 ATGAGAGGGGGGC-TTCGCGCTCCA-GGGGG-TT-AC-ACC---CCGCACCTTTCCACCCTTTGTTGTACCTTCCA-TGTTGCTTTGGCGGGCCCCGGGGG-CCAATTACCCCTGGCGCTGG-TCCC-CTAA-TTGGGGTTTGGCGAGTGCCCGTCGAAGGCCC-ATT-CAAA--TC----TTTTTATCAGTGAAGTCCGAG-TACAAAACAAAACAA--TGAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT-AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTGGGA-AAACCTAGGGGCATGCCTGTTCGAGCGTCATT-AACCCCTCAAGCTTTGCTTGGTATTGGGTGCTCGCC--------CCCAAGGGCG---CACCCCAAATCTAGTGGCGGTCCGGGGAGACTTCAAGCGCAGTAAATTACCATCCGCTTTGGAAAG-CTTTCTGCCCATGGTCCCCGCCAGC--AA----------------------- Caloplaca_sp._aff._scabrosa_Ukraine_2 ATGAGAGGGGGGC-TTCGCGCTCCA-GGGGG-TT-AC-ACC---CCGCACCTTTCCACCCTTTGTTGTACCTTCCA-TGTTGCTTTGGCGGGCCCCGGGGG-CCAATTACCCCTGGCGCTGG-TCCC-CTAA-TTGGGGTTTGGCGAGTGCCCGTCGAAGGCCC-ATT-AAAA--TC----TTTTTATCAGTGAAGTCCGAG-TACAAAACAAAACAA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT-AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTGGGA-ATTCCTAGGGGCATGCCTGTTCGAGCGTCATTAAACCCCTCAAGCTTTGCTTGGTATTGGGTGCTCGCC--------CCCAAGGGCG---CACCCC----------------------------------------------------------------------------------------------------------------- Caloplaca_stillicidiorum_EU365860 TTGAGAGGGGGGC-CTCGCGCTCCA--GGGGCTTCG-TGCC---CCGCACCTTTCCACCCTCTGT-ATATCTTCCACTGTTGCTTTGGCGGGCCCCGGG-GCCTA---CCCCCTGGCGCTGGCCCC-CCGCGAGGGAGG-CTCGCGAGCGCCCGCCAGAGGCCCAATTC-AAACCT-----GTTGTATCAGTGCAGTCTGAG-TTTACGAGTAATCAA-TCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT-AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGT-ATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCTTGGTATTGGCCGTCCGCCCCCCGTTCCCGGGGGGCG---CGCCCGAAATTCAGTGGCGGTCCAGGTAGACTTCAAGCGCAGTAAACTTTTGTTCGCTTTGGAAGC--CTT------------------------------------------------ ; END; BEGIN TREES; TITLE Bayesian_inference_of__ITS_Caloplaca_interfulgens_group; LINK TAXA = Taxa4; TRANSLATE 1 Caloplaca_trachyphylla_EU639651, 2 Xanthoria_elegans_EU639642, 3 Caloplaca_ferrarii_s.lat._HQ699662, 4 Caloplaca_crenulatella_s.lat._HQ699658, 5 Caloplaca_ferrarii_s.lat._HQ699657, 6 Caloplaca_aquensis_HQ699656, 7 Caloplaca_borysthenica_HQ699655, 8 Caloplaca_crenulatella_s.lat._HQ699654, 9 Caloplaca_ferrarii_s.lat._HQ699653, 10 Caloplaca_aquensis_HQ699652, 11 Caloplaca_ferrarii_s.lat._HQ699651, 12 Caloplaca_tominii_HQ699650, 13 Caloplaca_borysthenica_HQ699649, 14 Caloplaca_diffusa_HQ699648, 15 Caloplaca_diffusa_HQ699647, 16 Caloplaca_crenulatella_s.lat._HQ699645, 17 Caloplaca_lactea_HQ699644, 18 Caloplaca_ferrarii_s.lat._HQ699643, 19 Caloplaca_crenulatella_s.lat._HQ699642, 20 Caloplaca_interfulgens_HQ699640, 21 Caloplaca_interfulgens_HQ699639, 22 Caloplaca_erichansenii_HQ699638, 23 Caloplaca_ferrarii_s.lat._HQ699637, 24 Caloplaca_ferrarii_s.lat._HQ699636, 25 Caloplaca_crenulatella_s.lat._HQ699635, 26 Caloplaca_marmorata_HQ699631, 27 Caloplaca_marmorata_HQ699630, 28 Caloplaca_marmorata_HQ699629, 29 Caloplaca_crenulatella_HQ699628, 30 Caloplaca_marmorata_HQ699627, 31 Caloplaca_tominii_HQ699626, 32 Caloplaca_tominii_HQ699625, 33 Caloplaca_lactea_Italy, 34 Caloplaca_interfulgens_Turkey_1, 35 Caloplaca_interfulgens_Turkey_3, 36 Caloplaca_interfulgens_Turkey_2, 37 Caloplaca_lactea_Greece, 38 Caloplaca_interfulgens_Czech_Republic_3, 39 Caloplaca_interfulgens_Czech_Republic_4, 40 Caloplaca_interfulgens_Czech_Republic_2, 41 Caloplaca_ferrarii_s.lat._Czech_Republic_2, 42 Caloplaca_interfulgens_Southern_Russia, 43 Caloplaca_interfulgens_Czech_Republic_1, 44 Caloplaca_interfulgens_Slovakia_2, 45 Caloplaca_interfulgens_Slovakia_1, 46 Caloplaca_ferrarii_s.lat._Czech_Republic_3, 47 Caloplaca_interfulgens_Czech_Republic_5, 48 Caloplaca_ferrarii_s.lat._Czech_Republic, 49 Caloplaca_ferrarii_s.lat._Czech_Republic_4, 50 Caloplaca_sp._Southern_Russia; TREE Bayesian_inference_Interfulgens = [&R] (1:0.776734,2:0.767596,((((3:0.033867,48:0.037681)0.72:0.036485,(9:0.192269,18:0.079282)0.63:0.037341)0.73:0.042238,11:0.229524)0.94:0.073306,((((((4:0.089524,8:0.058629)1.00:0.109648,16:0.118167)0.87:0.037736,(5:0.017709,(23:0.017666,24:0.035502)1.00:0.052674)0.97:0.035974)0.97:0.037006,(7:0.017822,13:0.018817)1.00:0.089819,41:0.035887,46:0.087191,49:0.052112)0.57:0.03502,50:0.079953)0.99:0.073868,(22:0.084505,29:0.117946)1.00:0.094569)0.99:0.119322,(6:0.017278,10:0.018285)1.00:0.326933,(((12:0.078291,32:0.066165)0.75:0.041517,31:0.078502)1.00:0.104341,(((20:0.017501,((21:0.034043,44:0.0522)0.96:0.038934,(35:0.034135,38:0.034872,39:0.017172,47:0.017344)0.97:0.035898)1.00:0.056895,(34:0.033895,36:0.045544)0.99:0.044147,45:0.105887)0.85:0.044298,40:0.110057)0.89:0.053835,(42:0.077075,43:0.085588)1.00:0.07898)0.95:0.071081)1.00:0.135572,(14:0.017862,15:0.017001)1.00:0.327007,((17:0.017168,33:0.017361,37:0.017221)1.00:0.242889,(((26:0.133106,28:0.204108)0.68:0.04105,27:0.0397)0.92:0.054719,30:0.190555)0.97:0.077758)0.92:0.073748,(19:0.091788,25:0.260143)0.74:0.08382)1.00:0.49035); END; BEGIN TREES; TITLE Bayesian_inference_of_ITS_Caloplaca_emili_group; LINK TAXA = Taxa3; TRANSLATE 1 Caloplaca_demissa_353961, 2 Caloplaca_haematites_JN641769, 3 Caloplaca_aractina_GU723413, 4 Caloplaca_areolata_Spain, 5 Caloplaca_emili_Bulgaria_Rhodopes, 6 Caloplaca_emili_France, 7 Caloplaca_emili_Bulgaria, 8 Caloplaca_areolata_Montenegro, 9 Caloplaca_emili_Czech_Republic_1, 10 Caloplaca_emili_Czech_Republic_2, 11 Caloplaca_emili_Greece, 12 Caloplaca_areolata_Croatia, 13 Caloplaca_fuscoatroides_JN813404, 14 Caloplaca_atroflava_HQ611276, 15 Caloplaca_tianshanensis_GU552276, 16 Caloplaca_atroflava_HQ234606, 17 Caloplaca_ceracea_HQ234600, 18 Caloplaca_ceracea_HQ234603, 19 Caloplaca_fuscoatroides_HQ234599, 20 Caloplaca_xerica_JN641792, 21 Caloplaca_soralifera_JN641780, 22 Caloplaca_teicholyta_EU639593, 23 Caloplaca_erythrocarpa_EU639591; TREE Bayesian_inference_Emili = [&R] (1:0.573965,(2:0.301614,3:0.139912)0.97:0.103276,((((4:0.058942,(8:0.021908,12:0.021506)1.00:0.118368)0.95:0.070257,(5:0.012421,6:0.012191,7:0.035776,9:0.012062,10:0.012977,11:0.035372)1.00:0.192444)0.99:0.074217,((((13:0.05139,19:0.020977)0.78:0.01954,(17:0.009943,18:0.010049)0.95:0.022405)1.00:0.098537,(22:0.055218,23:0.136461)1.00:0.151674)0.97:0.063357,(((14:0.084217,21:0.187409)1.00:0.06103,16:0.017746)0.96:0.039707,20:0.168093)0.71:0.034197)0.75:0.039153)0.93:0.055326,15:0.149081)0.96:0.082357); END; BEGIN TREES; TITLE Bayesian_inference_of_ITS_Caloplaca_molariformis_group; LINK TAXA = Taxa5; TRANSLATE 1 Caloplaca_demissa_AF353960, 2 Caloplaca_demissa_AF353961, 3 Caloplaca_obscurella_AY313976, 4 Caloplaca_variabilis_AY233224, 5 Caloplaca_variabilis_AY313969, 6 Caloplaca_transcaspica_EU192156, 7 Caloplaca_erodens_EF090923, 8 Caloplaca_erodens_EF090924, 9 Caloplaca_erodens_EF090922, 10 Caloplaca_erodens_EF090921, 11 Caloplaca_albopruinosa_EF093564, 12 Caloplaca_albopruinosa_EF093566, 13 Caloplaca_albopruinosa_EF093578, 14 Caloplaca_albopustulata_EU192150, 15 Caloplaca_alociza_EF090927, 16 Caloplaca_alociza_EF090928, 17 Caloplaca_alociza_EF090935, 18 Caloplaca_alociza_EF090936, 19 Caloplaca_alociza_EF090929, 20 Caloplaca_concreticola_EU192153, 21 Caloplaca_concreticola_EU192155, 22 Caloplaca_concreticola_EU192152, 23 Caloplaca_concreticola_EU192151, 24 Caloplaca_badioreagens_EF081039, 25 Caloplaca_badioreagens_EF081036, 26 Caloplaca_badioreagens_EF081038, 27 Caloplaca_badioreagens_EF081040, 28 Caloplaca_chalybaea_EF093580, 29 Caloplaca_chalybaea_AY313975, 30 Caloplaca_chalybaea_AY313971, 31 Caloplaca_chalybaea_AY313970, 32 Caloplaca_diphyodes_JN641782, 33 Caloplaca_diphyodes_JN641783, 34 Caloplaca_diphyodes_JN641784, 35 Caloplaca_molariformis_Ukraine_1, 36 Caloplaca_molariformis_Slovakia, 37 Caloplaca_molariformis_Ukraine_2, 38 Caloplaca_molariformis_Turkey, 39 Caloplaca_molariformis_Kazakhstan; TREE Bayesian_inference_molariformis = [&R] (1:0.157383,2:0.088888,(3:0.880175,(((4:0.152747,(28:0.096358,(29:0.031919,(30:0.030623,31:0.031015)0.87:0.030737)1.00:0.162341)0.58:0.059808)1.00:0.17856,(((20:0.046273,21:0.015263,22:0.015301)0.97:0.03067,23:0.015843)1.00:0.189579,(((24:0.015449,27:0.045727)0.77:0.037628,25:0.319638)0.78:0.051163,26:0.032919)0.91:0.102715)0.95:0.071797)0.61:0.054764,(5:0.098078,6:0.153777)1.00:0.092662,((7:0.031009,8:0.015451,9:0.015571)0.97:0.042253,10:0.034394)1.00:0.162036,((11:0.057735,12:0.079447)1.00:0.11419,13:0.226983)0.86:0.088214,(((14:0.270541,(35:0.015274,36:0.014612,37:0.014363,38:0.014534,39:0.014344)1.00:0.178858)0.96:0.105172,(33:0.030264,34:0.016517)1.00:0.156707)0.50:0.039419,32:0.190049)1.00:0.103572,(15:0.122068,16:0.113415,((17:0.099913,18:0.114379)1.00:0.141279,19:0.132654)0.93:0.060855)1.00:0.233126)0.69:0.182019)1.00:0.607066); END; BEGIN TREES; TITLE Bayesian_inference_of_ITS_Caloplaca_ulcerosa_group; LINK TAXA = Taxa1; TRANSLATE 1 Caloplaca_citrina_DQ173226, 2 Caloplaca_citrina_DQ173239, 3 Caloplaca_ulcerosa_EU639623_2, 4 Caloplaca_sp._aff._C._ulcerosa_USA1_GU080298, 5 Caloplaca_sp._aff._C._ulcerosa_USA_2, 6 Caloplaca_sp._aff._C._ulcerosa_USA3, 7 Caloplaca_substerilis_Austria1_GU080299, 8 Caloplaca_substerilis_Austria2, 9 Caloplaca_substerilis_Bulgaria, 10 Caloplaca_ulcerosa_GU080293, 11 Caloplaca_ulcerosa_GU080294, 12 Caloplaca_ulcerosa_EU639623, 13 Caloplaca_ulcerosa_GU080295, 14 Caloplaca_ulcerosa_GU080296, 15 Caloplaca_ulcerosa_GU080297, 16 Caloplaca_substerilis_Czech_Republic, 17 Caloplaca_substerilis_Slovakia; TREE Bayesian_inference = [&R] (1:0.385437,2:0.318955,(((4:0.009916,(5:0.029119,6:0.009517)0.98:0.019252)0.99:0.058582,((7:0.009738,8:0.009498)1.00:0.110188,((9:0.009913,16:0.009688)1.00:0.108887,17:0.137393)0.68:0.033927)0.94:0.084101)1.00:0.168712,(10:0.203143,(11:0.074747,((3:0.018196,13:0.009419,15:0.011001)0.80:0.027253,14:0.063253)0.96:0.04906)1.00:0.09025)1.00:0.186931)1.00:0.480282); END; BEGIN TREES; TITLE Bayesian_inference_of__ITS_Caloplaca_crenularia_group; LINK TAXA = Taxa2; TRANSLATE 1 Caloplaca_stillicidiorum_EU365860, 2 Caloplaca_cerina_EU365861, 3 Caloplaca_aff._crenularia_Canary_Islands, 4 Caloplaca_fuscorufa_Ukraine, 5 Caloplaca_fuscorufa_EF643514, 6 Caloplaca_fuscorufa_EF643513, 7 Caloplaca_ammiospila_EF643516, 8 Caloplaca_ammiospila_EF643515, 9 Caloplaca_furfuracea_FJ866813, 10 Caloplaca_furfuracea_FJ866811, 11 Caloplaca_scabrosa_Czech_Republic, 12 Caloplaca_furfuracea_Austria, 13 Caloplaca_sp._aff._scabrosa_Ukraine_1, 14 Caloplaca_sp._aff._scabrosa_Ukraine_2, 15 Caloplaca_crenularia_AF353965, 16 Caloplaca_crenularia_EF643511, 17 Caloplaca_crenularia_Iran, 18 Caloplaca_crenularia_Hungary, 19 Caloplaca_crenularia_Turkey, 20 Caloplaca_crenularia_EF643512, 21 Caloplaca_crenularia_Bulgaria, 22 Caloplaca_herbidella_Turkey, 23 Caloplaca_herbidella_FJ866799, 24 Caloplaca_herbidella_FJ866807, 25 Caloplaca_herbidella_FJ866805, 26 Caloplaca_coralliza_FJ866796, 27 Caloplaca_coralliza_FJ866794, 28 Caloplaca_crenularia_Crete_2, 29 Caloplaca_ferruginea_FJ866808, 30 Caloplaca_crenularia_Crete_1, 31 Caloplaca_crenularia_Spain; TREE Bayesian_inference_Crenularia = [&R] (1:0.148489,2:0.232893,(3:0.554338,((4:0.010599,5:0.010442,6:0.010637)1.00:0.589929,((7:0.036877,8:0.011908)0.89:0.065125,(9:0.032332,10:0.011899)1.00:0.150717,11:0.096806,(12:0.126632,(13:0.130171,14:0.016052)0.72:0.046334)0.99:0.04714,((((((((15:0.025554,16:0.019245)1.00:0.071874,20:0.023795)1.00:0.052284,(17:0.026012,21:0.066613)0.73:0.024026)0.57:0.029347,19:0.039971)0.50:0.042225,(18:0.042203,28:0.015284)1.00:0.071446)1.00:0.080206,((22:0.012155,23:0.020723,24:0.011531,25:0.011528)1.00:0.131968,(26:0.03738,27:0.086133)0.64:0.0274)0.73:0.042841)0.97:0.136633,(30:0.232978,31:0.134394)0.99:0.09607)0.74:0.074548,29:0.216739)0.92:0.113275)1.00:0.456105)1.00:0.243831)1.00:0.514834); END;