#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 20, 2024; 1:56 GMT TreeBASE (cc) 1994-2008 Study reference: Talevich E., & Kannan N. 2013. Structural and evolutionary adaptation of rhoptry kinases and pseudokinases, a family of coccidian virulence factors. BMC Evolutionary Biology, 13: 117. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S14212] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=43; TAXLABELS Eimeria_tenella_str._Houghton_ROP40 'Eimeria tenella str. Houghton ROPK-Eten1' 'Eimeria tenella str. Houghton ROPK-Eten2a' 'Eimeria tenella str. Houghton ROPK-Eten2b' 'Eimeria tenella str. Houghton ROPK-Eten3' 'Eimeria tenella str. Houghton ROPK-Eten4' 'Eimeria tenella str. Houghton ROPK-Eten5' 'Eimeria tenella str. Houghton ROPK-Eten6' Eucarya_sp._ePK 'Eucoccidiida sp. ROP21-27' Eucoccidiida_sp._ROP35 Sarcocystidae_BPK1 Sarcocystidae_sp._ROP11 Sarcocystidae_sp._ROP16 Sarcocystidae_sp._ROP17 'Sarcocystidae sp. ROP19-29-38' 'Sarcocystidae sp. ROP2-8' Sarcocystidae_sp._ROP20 Sarcocystidae_sp._ROP22 Sarcocystidae_sp._ROP23 Sarcocystidae_sp._ROP24 Sarcocystidae_sp._ROP25 Sarcocystidae_sp._ROP26 Sarcocystidae_sp._ROP28 Sarcocystidae_sp._ROP30 Sarcocystidae_sp._ROP31 Sarcocystidae_sp._ROP32 Sarcocystidae_sp._ROP33 Sarcocystidae_sp._ROP34 Sarcocystidae_sp._ROP36 Sarcocystidae_sp._ROP37 'Sarcocystidae sp. ROP4-7' Sarcocystidae_sp._ROP41 'Sarcocystidae sp. ROP42-43-44' Sarcocystidae_sp._ROP45 Sarcocystidae_sp._ROP46 Sarcocystidae_sp._ROP47 Sarcocystidae_sp._ROP49 Sarcocystidae_sp._ROP5 Sarcocystidae_sp._ROP50 Toxoplasma_gondii_ROP18 Toxoplasma_gondii_ROP39 Toxoplasma_gondii_ROP48 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M17023] TITLE Consensus_sequences_of_each_ROPK_subfamily_profile; LINK TAXA = Taxa1; DIMENSIONS NCHAR=279; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Eimeria_tenella_str._Houghton_ROP40 FERGPMLMTDFFALTVDHQ------PFNMRIFPLPGGEQKVEQYKKVMLNEQKVLSIFGVADGKKVSNAYHCYLPVEEVFFGKGQQVISLPSLKMPSVVFLYPSASATLGQVAEAIKVAQAAQLHITLQLIKLVAITTSKGILLRRLSLENFLLRGDGVVFLSGFSELVNEKEFETEDGTLVTQPPTR----SRGRRFTPADNSCDLGLVIFSLWCNGSPPEREPSG---------WVNL---SCEEVPVLVQQIICGLCRAHGYPPQNAFQTLGSHEF 'Eimeria tenella str. Houghton ROPK-Eten1' MKVGPALGVGGAGLVLLVEVLSGAKQLAAKITYFPVPRHVNHMIEELFRQELDPLHTVGAASSKKVARQNQWVVPLFVATVGSPKASLQVQNTVFGNKVLLSEVMLGDGADLMHESPLPVEAREQVCLQVIETVARLHATGWCHWDIKPENFLISKSGKVHLADFGMAGEAGDRCTEKITPMFMDPSHAECF---TNISHKYDAWSAGLTCYVLMTNRLPYRIRTGRGMEEYLAMLDTTHTARSHAGVPAVWAAAVSELLNRDRAKRPTPLQLLDYPHF 'Eimeria tenella str. Houghton ROPK-Eten2a' LKIAKFLGEGTFALVLEVKDEETGEVYALRVPFGVNELLENDVEHQVLAEEKGLRAILGKMPADKAAARMGLAVPLATAQLDKLPNGLHSNGVFISSKVQLTERFVVHLEDFIDQVPLPTDAKTYIAQRLLLQVLHLQERGFCHNDLKLDGCLMRADGSFLLGDLGSSSPAGVISLVGTTPEYAEPEFFMNIAVPVISHAKGDMWSLGVIIYELFTKTLPYGLTEPANIAAALGSYFGKLAAD---RVPQRWQELLVKLLQVRRDKRISANEVAQYADL 'Eimeria tenella str. Houghton ROPK-Eten2b' YEVTRFLGEGLFSLILEVKDKESQRFFALRVPFGANQRLTEALSELLLAEEEGIRTALDKTPAAKGASHRGIAVPLATAELEDMPADLYAEGLVVSNKVQLTELFYGDLETLLEHSPLPLDAKIYIAQRLLLQVLHLQEIGACHNDLKLSSCFMRADGSFLLGDFASINVAGTAKFVGATLAFTEPELFMNIATPVVPEARSDLWSLGALLYELFTGDLPYGLSAPAHSMDRLYIHFTELSSA---HVPERWQELLTRLLQVKREKRITADEVIKFSDL 'Eimeria tenella str. Houghton ROPK-Eten3' VRICKVVGVGFSTLVVEVEDVESGRVYVMHIPVYHKDVFLLEVKEAMVAEEDAVRQACGNVPAELAASQKGIAVPLYTAEIQSLDELHSREDFYIFNRVELMEKVDGSLAQLRSEAPVMTEARDYIASRLLHIVLKLEQSGVGHNKIDWSSFFLRPDGSFLLGNFSSASPFGKTNLFSSMSDYPEPQMMLQSGEGLCPEANSNLWSLGVLLFELYTGTEPYGRVEGSTWGERAWHLSENLRSD---NVPFRWKQLILRLLEPRRSERITAWEIIRFPDL 'Eimeria tenella str. Houghton ROPK-Eten4' LKITRIIKFGHSSIFVEVQDVRTYRYVTVRIHVCDTKRSQPNRTKAVVEETQSTTLARGGTDMDLATSHSGLLVPLFTASLEGLAAETVCGNYVVLKNAEAYEELVGDLDKTLPTLRDANLGINYVARTLVIETLNLQRLGVSHNRLEWANLFVNTDGTVLLGGLDAVTRFGDLLSARMNPRFVEPQLMADLGFAAKVHEKCDLWSLGVLLYELFSGRQFEDILSLEATSNVLAIELNELSSSASRGAGPKWQQLTIRLTQPSRDKRISSEEIFNYGDL 'Eimeria tenella str. Houghton ROPK-Eten5' YTIKRYLYEDNESVTLEIVDQATNLPYAMRLRTVRPRTAEELNQRSLVETTSSMLQAIGESDLRKAAEERGLAVASAVATIQGVPTVMRCTHVYLVNDVEIGERYSGRLSDIFIPENMPDNAKEYMAKRMLLQVLQLQRAGFSHNNLHLGNFFMRIDGSCLLTNFGAGTMIGELRVEAVDPRYAEMELGAAAASHPVVDEKSDMWGLGICLYQIFTGKMPYGLES----SDPPVKTFNFMSAQRGRGVPVRWQELIMGLLEIDRDDRIDAETVSRFQDL 'Eimeria tenella str. Houghton ROPK-Eten6' YVVTRFIDQGYQSVLLEVQDRETEGSAAMRINFLPNDTAKTSVSPQMIRVAQASLGISGSTPLASAAQEKGIAPTRFMARIDGFPKILRYGGLSVMSAVELTENVEVSLQDALDALQPPTGTKAYIARSVLKTVLHMQQAGWSHNGLNCRSFGVQEDGSVLLLGLQSSVPFGEIDNVGISPLTTEPELLANLKGLAEANAKADMWSLGIVLHQILMDELPFGLSDIPS-DESAIPHVVQLNVD---GVSRRWRELVVRLLETDRSKRISAEEVAAYTDL Eucarya_sp._ePK YELGKVLGSGSFGKVYKARHKDTGEEVAVKIIKKEKE-------REQFLREIKILKKL---------NHPNIVKLYGVFEDED-------------HLYIVMEYCPGDLFDYLRKRGLSEEQARRIARQILSGLAYLHSKGIIHRDLKPENILLDEDGHVKIADFGARQLDTTTTTFCGTPWYMAPEVL----QGGPYTKKSDVWSLGVILYEMLTGRPPFPGDNNQ----------ELLEKIFPPNCSPEAKDLIRRCLQKDPEKRPTAEEILQHPWF 'Eucoccidiida sp. ROP21-27' VIFDGVLGAGGQGVVLLARDVDPGLEMAVKIFRIKKKALHEARLQRRVQWETAIWKYARDVSSYQWSQLAHLVMPLDIVEPVE-------EQMRYWHQWLIFESFAGDVARMKKLHSGSGQVRLEASKQIFMACMRLHDMGMVHSDIKLPNYFISSEGRIFLGDYSLSRPIGDSPCVEGTLRYLPPENMKCIEKNIMTSSKKDTWAVGVALYKLWCRFFPFDLDSLW--SEHAVDRVAEVNFYPCADMPVAVMDLIQQMLDPNIETRPTLRDLFVHPVF Eucoccidiida_sp._ROP35 LVMIVPHVSEALADFLGLDEETREHGIVIKGKSSRPG-----FEAEQTAWEINAHQNM--------VPQNPFILPLLGAYRSR----------SSENVYLVLPRARGDVSQYVRAAP-DSVNVRLAAAEMAYAVYLLHRHGFLHRDIKPHNFFVGFDGHVVLADFEGVWPKGMVTEVVYTRGYLAPELRRD-TDWVHFTEKSDVYALGVCFKRMLKYMGPT-------------------------PVPDELWDLVRKMTAKDPEKRPTMKQVMEHPYF Sarcocystidae_BPK1 TTVNVRVPARELVRLLSLTPEQQREGVSAKVRLINLL------DPKYSVYEPYLYREI-------LPKRSPLLLPSLGEYRGA------------FLTYIFHPLSKGLVGDMLETGR-SHPDVQVLAANMVAALKSLHNLGLLHRSIELNSFSVLPDGTVVLGGLQTAAPIGT-VWVGFFGQETAPEIDRNF-TQSRHTVKSDVYSLGVAFRNLVQLNGNMGPDDRGIV-----------------RQDERLDKLSQKMIEEEPGNRPTIEEIMKDPLF Sarcocystidae_sp._ROP11 YTMERILGAGAASIVIQAVQETTRPRVALRFPVVDVRELLSQLAEEQLRLEIHKAALVAAGTEGNFDSEWGFALPFRVGRLSNEGLVLAMSGKAILNFVTVSPAMMCDLHTLRSSSR-TPAMDEFVVMRVLQLAANLERLQLTHLDITDENVLVGRDGQLFLGGFQHVRAKGGSCGKIPSVTFTDPRLAHCAGSYAAVNPAVDAWMAGMMLLRWFCGDVFFNRRSSLAEPRQAVQVLAQLAANRCRHVNERFQFIIQSLLDVNPYKRGAPSAQLTAYFP Sarcocystidae_sp._ROP16 LYNRGHLGSGHFGAVIKASLDD-GTLYAAKVPYSQIVSSARAELVKTIRQELDVRDKLKGLTLTETVSQYGLPLCQMTLTLPEKATVVRRRLFVVSKEVMLLPLIDSALNSLVQSQP-PFLFQRAVAREAILALAKLHELGFAHGDVKLNNMMIDVHGFGHMLDMGSVRPVDS-CVSEEDKYYWAPELAKSQQKTCLKRGALDVWALGLAIFEFVCFRLPYSLSNLPSSFWSRVEHLSRLSVKDCNESDPAVMGIVAQFLNPDPQERPELPKFVNSYTF Sarcocystidae_sp._ROP17 LKKRGFLGGGGFGLVYHVEHPTTGQPFALKIFVQRVMNKEGDRVSDLIEDEFGVMKYFPEWTPARMYSELRFMVPLLKLRVLGKPEFQDVNHLRIYSVCALFPKAQGDLEEAVVLLANAYNIRMSCTIQMVKLLARFHAFELVHGDVKLQNFLVDKSGLLLLSDFTQILRTNERYPPVVTVIYMSPEIATCMRNAIPYTPQIDSWMLGISLYRLWCGNFPFGMTLDAT-ALQVAGIVIRS---SCHDIPEQFREMIVGFLRKTPGVRLSPQQALEQFSL 'Sarcocystidae sp. ROP19-29-38' TGPARFLGMGSTAIVFRLNQVKAPTQVAAKICVRRLQRTLEEIMERFLSNESSVRNALPHVTPETML-EHGLLFPHDVCRVSNMPSWFRADSYFVLPVVALFPVFTCDLQQVVQSGL-SRAAKLYITRQLLKSVAWLHRNGVAHNDLKLENVLLSAEGKAVIGDFGFAVKLGTSSAIQFTAPYLDPQTAEASKTETTITEERDAWALGTLLFLLWCGSYPFFSDEQA--DLPPSDLLKNLTTRLCKDMPPAVKHLITGFLQWNSDDRRRPGDVVDDFLA 'Sarcocystidae sp. ROP2-8' LVRGTVLGDDDSYICLEATDQETGESFEVHVPYFTER--PPSNAIKQMKEEVLRLRLLGIKNQKQAKVYLRFIFPFDLVKDPKKRKMIRVRDMWVLSRFFLYPRMQSNLQILGDVLLLVHHARLQLTLQLIRLAASLHHYGLVHADFQVRNILLDQRGGVFLTGFEHLVRDGASSP--IGRGFAPPETT-AEHHPTLMTFAFDTWTLGLAIYWIWCADLPN------------T---KDAPLGRCKNIPQPVRALLEGFLRYPKEDRLLPLQAMETPEY Sarcocystidae_sp._ROP20 FRRGNPLASGSYNVLSEATPVPSSEPVAVRIALSARSVEAEDECLSLARKYSNLMSKLPPFSSRDLLEKFGMVVPQLVGQLRGRPSLLRKGGNSLLNFVQIMPLMACDLNQFRITDP---NAVKFVVKRMIQLLALFGAAGLVHQDIKTENFLVSRQGRLYLADFDAVVRENDICNKKLSLLFSPPEVLRCFEEKIALTQVVDSWSLGMAAWEVLCMSEPFDGMRFSEDDLYNMKVIAALDTRRCRRPPAPLRKAVECLLDRNAATRCKALDLFKSPLF Sarcocystidae_sp._ROP22 LKGIELTGAARGLFVTKVSAVVTKNPLSSSLQTRSTQKVYEEEVEARLAWELRIWRHLPSWRAEQLAAEEHILIPGALLSHSGRGSPSSRLSEKVFNVFIWYPAGYRDTLESSMMHSTPRDVMESITVQMILAVANLNSYGLVHTHLRSSSFVFTPEGIVLLSDLNRVVRQGEMREASLNDLTASPEERVCVVGPLEAHPTVDAWRLAVILYKLWCLESMYERSSYH--QFVARQDLQRINITACRDMPSSLQRLLRQMFEPDPANRITSAEAVKSSFF Sarcocystidae_sp._ROP23 ITVKDYIPVAGWGLCVGVVHPESNQEFLLLNFVSLADAAWGKWFEWRLRKIAEPLQWLGLRNPSEAYSQDRLMLPLDLLEISNSSRYFVRAPFVVPNLFVLMPRPATSLSDLVSFMSQTLAVRLSLTLQTIRVVAGFNNRGFIDADIRPASFFVNAKGLVFLGIFTRTTIA---RRASGRRQFTAPELV---KVFFRRDEKTNAWALGITLYYIWCNRFPFGILDGDSA--------------VCVNMPDPVKVLVAELLDRQRRARPTANTAMQREIF Sarcocystidae_sp._ROP24 IKYDGILSSGPWSTVLRVMDVDENQEYALKVARLRAS-LSGAAGYRQLLRQGLLHHPV---SPHHALWCLQLMVAIDLLKLPRIPRFVRESRLTIANRFLLMPLAYTDLLAVLRALFGGFLARLHMTAEVVTIVANYHKQGFVHGDIQPQKMLIMPNGSVVLGGFTDFRTPGARSPDVFTVPYLPPEHL---DEECVYSYLTDSWQLGLTLYQIWCLRLPFGLMTPVVADDPDYYVVEEVAELGCVNIPEYVESLIKQLLQFNPENRLTPARILVSRDF Sarcocystidae_sp._ROP25 AIRGKVLGFGAYGVVVELVDVSRSVTYAAKIMYWAKAEEVRQTLEGFVHEELEAFKLLTGISDSDLFQKHGLVVPQSVRRVAKLPTLLRATPLFFHNQLIMFPALKCSLDMLAQDRF-TREGLRVLVRSLVRLVAGLHALGFSHNDVKPQNFLVGGDGGLFLGDFAYLAPIDEVCNKGFTVDYSSPELMACA---MSMGPERDSWAVGVSAYRLACRRFPFLLDRKFNAPRLIATHIANLKETRCGTEDRVVMSIVLRLLHPDLSKRATVDQLVHEPFF Sarcocystidae_sp._ROP26 SMRLRPIGIGGTEILLKMRDKQDGGNVPDHIYWQPLFQFLKHGLVQRVQKQISLIPPGYEGRSEHLCSHYGLMFPGGTYVLAADNAPLQFGSRAVLNLFIQFSPAEIPLSVLSYKNL-SPTLAAFLVKQMILNTAMLHSMGVVHNGISSAAFFLSGNRLLYLGNFGAARFY---FEEAGHVMYYDPETASVFRPNVVYGQARDSWSLGRVMFQLLCGQHPFGHLGPPASPLVTAKRISMLARDTCFSAPQDLMSIMANFLKFDANERPTPLEIVRYPQL Sarcocystidae_sp._ROP28 IIWHKLLGVGGIGGVLLLEDKDPLKKFAGKILYQLSDSQSKEYFYQARNEEIGVASLFTATDRMQFLFQRGFVLPQKAFWFEG----TTQEIMRLDRYIIAYPIVGPDLEDLDPRKF-SLSAVTYIIYKLTKLMATMQEMNLVHTDIKAENFLARDDGELFAADLSMSIKMATIPCLQGTMLYLDPNGAECA----SPRAKRDAYALGVTFYKLICHDGPFHLGRLEKELLLMLSGISRFVERKCPLADTSLLTIVKLLLDPREDRRWTPLDLVRKTAF Sarcocystidae_sp._ROP30 LVAGRLLGGGSEAMVFAAEEIELPRLLAIKIYLCEANVKAAEEAEAVEWLQMAFWRLVPSCVDVLLSRQLGVAAPSWVGAVEGMPLVISGSHFAILNRISAMPMMLGDLLAVSPTAL-RVADRIYLILRLIQVVANLHCLGVLHNDLKLENLLIGLDGQLYVGDLGAILPNTGRFQRIGTDVYLDPQSAADF-FSVVYSPLRDAWAAGIVCYYIWCSALPYNLNQVYNRGKQMFEFIADLPTSTCGPEANEVRRIIKDLLSLDRSTRKTPQCIVESFLY Sarcocystidae_sp._ROP31 LTRGELLGCGGTSNVYSMTQED-GTKVAVKILSSYAQLSAGASAMKIMRREAGISELLGNQDLDDILYNDRLLVPSDVLRLPGKNDWFFPQSTVIYNYVV--PLLDTT---------KSFAARVSATVQMVKVVAGLHRKGLVHGDLKPSNFLVSNSGIVLLGDFSYAYVRGQ----------MSTENIRMAFSQVRVELTHDSWMLAFTIYFLWCGRLPWGIAIEEGDYRKIVAILDQNNFHNCNGIPAGIQQLIRLLLAKDPNRRWTPEKAIALNIF Sarcocystidae_sp._ROP32 FVRGPLLGVGGNGLVFEAQDTD-GHVYALKLLLIRMSREEDWAFARALRKEMKILRLFPPDKSPEQLYEEGFVLPLFQGILAGKPRMTPLEEFGATSVVVGFHKVACSVGQLFSAHRLPDGVKLELTKQMVDRVARLHSYGILHGDVKWENFFLDDNGRVFLGDFEQAQSLGHQ---------CGPRRAACYDRRLDLLASRDSWCLGVVFFKLWCHRLPFGLQLSRSDMPRFMNQLATIVPDSCRHMPEDVKDLITALLYYDRYSREAPLSLIESPLF Sarcocystidae_sp._ROP33 MVMLVETPSKELRALVKSAMRALEEPLVVKARVFDER------DGTRVGLEVNGQLWA--------APKNAFILPAYGAWISDVGDWKPRQKKKLFMAFMVMPRTRGDVRDYLCKRS-NPVNVKYAAAEMLYSVQQLHREGFLHRDIKLTNFFVGYDGHVLLADFDGVWPIGVAKYLVYTRGYLAPEINPH-DQIILNTAKSDVYALGVCLKQLAKR-YP--------------------------KTADKLQDLSDKMTEANPRRRFTLEEALGHSFF Sarcocystidae_sp._ROP34 KVTFVDRPSAALLSFLHLEEEDVPYGVVIKAIPYDAF------DFYESVAEPYIHRMF------DDPRKFPYVVPVLAALRST----------SKRVLYLVLPLYR-ELPETVDEEA-RSLDFVLLLAEMAMAVCQLHERNLAHRDLKEDNFLVSPEGHIVVSDLATLDIT---SFLIGTSGYMPPETRSSYYKRSRYGEKTDVYSLGVAFQHLAFMGLGV-------------------------QVPTQLAKLIKKMTSPDPEKRPLIGEVMEDPFF Sarcocystidae_sp._ROP36 IKRLDMINYGYASATYAVKRIFLDQDGALKVFVVKRNRIEVDLVEELLLHQTRAWRFFPPERAEQLAETEGLLIPVSLLKLVN-------PKGDILNAFLLYPRAYCSLKFFLISWGAPMKAMISISIQMVYAVASLNSYGLVHGHIRPSSFVMTTDGKVLLTDFHTVVEEGSLRVRAMADLNASPEELECSGQTFEASFALDAWRLGVSLYKLWCRESWREPKPGE--AFVKAQQRGRTDLQHCRDTPSFILRLIQQFLEPNPETRLTPIDAVKTSLF Sarcocystidae_sp._ROP37 FMRGAFLGAGATGIVTELIEKTSGRYFAAKFFFKEVAPAAFQAAQQRLQKESNGNELLTTAAQVRDLWQKGFVASLGTYKLSA----RSGHQLMVLSDFLLLPLMGPRLDSLPHTAL-SDNAQKYLFHTLVTVVGSLHKSGLVHGNIRTTNVLINKTGEAGLADFSLLMQTGSVDTMSFHPTQSEPERVHSLGTQLPASEDFDSWNLGQLLFSLLCGKLPWALGQVFAREMAAEKFYRQFREKFCPGTKLQLISIVKLLLDPTHETRWTARKLVDHPFF 'Sarcocystidae sp. ROP4-7' LVRGRRIGLFRPGMQFEATDQATGEPMTVLVGHTWNK--PSGKDLDKLRHQALAIGLFKVKNPYLANRYLRFLAPFDLVTIPGKPLVQKAEVGWVINLLFLLPPTHVDMERFVEELYLADAARLYLTVQAVRLVAHLQDEGVVHGKILPDSFCLKREGGLYLRDFGSLVRAGTKVVAPNAQGFSPPEV----PRKTTMTHAMDAWTLGATIFFIWCFKAPDTGSGYEYS--------------RC-RRAENVKLLVYKLINPSVEARLLALQATETPEY Sarcocystidae_sp._ROP41 MVRGRYLGVGGNGIVFEASTAHSGESLALKLLFLDRTSDISKALAVSKRMEMRIRLLLRSVTSAQLYFRDRFAVPLFCGRIRGLPDLFDISRGAGCSIVVLYKRLYCSLADLLSACALSYQARLFLTKQMIEVVHNLHCKGLVHRDIKDSNFFLDEQGNIYLGDFGLSVPNGSTEALVYTPKLTDPSDVGIVAIFAQVTEAADLWALGMTLYKLWTGVYPFGLSSKHFRTKDVTMYIQQLLPDRRDQVHPEVQRIIRGLLCFDRTQRLRLSEVVRTSQV 'Sarcocystidae sp. ROP42-43-44' VSLRAPLGIGEYTAVFSGFISGIDSELAVKAFLGKTT-----ESMSVAETEASILKIVSLKDPVDAMHRLRLLAPIETLVYRRDGDSADQ------RPVVLVPKASSSLVDVINFLRAKKIVRLGATVQLIQLLAALHTRKVVHGKLEPKSVLLFSHGLLYLSDLGRARRHGERFTTSRPSRYGAPEV----HPETPYTYSRDAYSLGIILFELWCGRLPFDLGTPGVDNSHPATLYQTVRLSVCPDMPESVKTLIRKFLTRRRWTRLVPQAALRDANF Sarcocystidae_sp._ROP45 LKRGRFLKYGGGTLLFEVWEGR--KRWGLRLHLTQLSRTAHGVCAEAQELELHAGRILQNEQPPDLFCTERIALPIAVGEVSSLPKVTQIDDEHATNIGGLYPLAACDMREVAEQYHMPEEVKVEAVRQMVGAVGRLHSRGVVHLDLKLEHFLLDNHGHVYLGDLSTSEKI---SCEFGSLPFLSPEHLACWQKKFSPSMATDSWSLGVAIIQLWCGETPFRVPNALWNPVAVAQYLDQLGKISCPITNPEVKRIVTGLLTYDHVKRWLPLDILFSP-L Sarcocystidae_sp._ROP46 TLIPVFHMPPQLTADLFSPGESHESGVMVKVRRGTPG---VLPASDAGIYEAFAHKEL--------APKSPFVLPLLGACQGC----------TTGNVYMFTPLLQGDIRRVAVQHPSQCISGELVLKEMAASLKVLHDAGLVHGDVKEQNFFVGRDGHVVIADFGALGYPGC-SLEAGTLGYIAPERL---VNDNANSFASDIWALGVTFKNVLTAAT---------------------------VRAEVLDGLSNRMTASDPAARPSVDDVLLDPCL Sarcocystidae_sp._ROP47 LRMGKVLGGGARSIVVEVMRVDTGDRWALKAFLVPRDSPGTPPPWDAISEEAHAIKQLPHTVPAVVYRNLRFLVPTDVLIYEG-------TGSNFYTTYLLFPIAQGSLLDAVRAMFRTLAANVSFSIQIIRLTALLHSHGVVHGDFQTKSFFLCQDGSLFLGRVRSLTRVGAYSSATDSPRCTPPEVL---PENAAFTFSLNAWELGCILYQLWCEGLPFGLSPTPETTKKRSGLAGTSHLVGCVNMPVEMRQLIRRLLQEDPHKRLLPTEILRDPVF Sarcocystidae_sp._ROP49 LVRGRNVAVTEGAVLFDVTDNESKHEYTAKLFSVADKKALSAVWKSFKEKNVESVLVE-RFGSDENVLKSGFLVPVGGGSIVNVPPVLQPSDTSFLGALILYPRVAQTLDALLWSGALEKAAKFFLIRRLIRSVGDLHRSELCHGNLHPTNIVILASGDIALTSFGSCFQS----------LFVLSDT------MGVGGAKQDTVRLGNIAHAIYTGKYPSDDLD------------------KCNTDVVVIRAAIMRLLCCGECPMQKPADMVVSPLF Sarcocystidae_sp._ROP5 LKLVEPLRVGDRSVVFLVRDVERLEYFALKVFTMGAE-NSRSELERLHEATFAAARLLES--PEEARDRRRLLLPSDAVAVQSQPPFAQLSDYAVANYFLLMPAASVDLELLFRTLDEGILARHILTAQLIRLAANLQSKGLVHGRFTPDNLFIMPDGRLMLGDVSALRKVGTRSS--VPVTYAPREFLSNA-NTATFTHALDAWQLGLSIYRVWCLVLPFGLV----T--RPS---LRV-PGSCTPMPDFVQTLIRRFLNFDRRRRLLPLEAMETPEF Sarcocystidae_sp._ROP50 VTRQVYMGSAKLAEDLRVPHALLTGGFTVKMCPGSRS------KPWKALTEIFLRKKL-------LPPNSPFFVPLVATAKGK-----------EAATLQFFPPTRGSLRAIATQVPEKLNV-VLVMAEMVAAVEALHGLGILHGALSLDAFYVNREGHVQLSDFDSAIVD---NVFRPISEMAEPVRDGYRNISLLHTKAADVFCLGKAFEALADLDL---------------------------ENGLMLEVLVERMTQADSEKRPSLNDIARDKFF Toxoplasma_gondii_ROP18 LVRGAPLGSGGFATVYEATDVETNEELAVKVFMSEKE--PTDETMRDLQRESFCYRNFLAKTAKDAQERCRFMVPSDVVMLEGQPASTEVTTRWVPNYFLLMMRAETDMSKVISWVFFGLVVRMYLSSQAIKLVANVQAQGIVHTDIKPANFLLLKDGRLFLGDFGTYRINNSVGRAIGTPGYEPPER----ATGITYTFPTDAWQLGITLYCIWCKERPTPADGIW----------------DCPSTPELVQDLIRSLLNRDPQKRMLPLQALETAAF Toxoplasma_gondii_ROP39 LKIRSVAGTGGYNIVVKAFVIKEPQMVSLRIRMGGASMQAAEVVQKCVSETDRIMLVFEDVTPQVLVSRFRFAVPLFSGRIRHRSALLGQRGYALLNYMDVLPPMLCDLFAAQSVVQ--PSMTRAIAKQLLELVAHLQALGVVHSDLKPENVLVDEAGNLFLADFDKAHKVGSVCGSLPHSLFADPQTVICRDQEVTLAFSQDAWALGMLMYDIFCHNWPFMGMDYNNDDTSNTIILAGLAVDGCDRVESEIKDLISRLLDVDPENRLDVLSFYMSDFF Toxoplasma_gondii_ROP48 LYRGPVLGRGTRGIAFKGTMVATGEHFAVKLQFVRKSSSLLRDLVKYLQQEFAVRNMLVAAYGEENVQKKGMVLPLTVRRRHAFGDFITTSFTMFWNFLVFYPLMKCTLGNLLVGPHWPREARLFVAKRLIEIAAALQRAGVLHRDIFESKILLQESGDIFFADFGASGKH-----MQSGIAWIELQL-------------AESSRLGHLVYYVYTGKTFTKFWK------------------EVNLADKLIRNAIKALITCNKDKRILPQEITAIPFF ; END; BEGIN TREES; TITLE ROPK_Subfamilies; LINK TAXA = Taxa1; TRANSLATE 1 Sarcocystidae_BPK1, 2 Eucarya_sp._ePK, 3 Sarcocystidae_sp._ROP11, 4 Sarcocystidae_sp._ROP16, 5 Sarcocystidae_sp._ROP17, 6 Toxoplasma_gondii_ROP18, 7 'Sarcocystidae sp. ROP19-29-38', 8 Sarcocystidae_sp._ROP20, 9 'Eucoccidiida sp. ROP21-27', 10 Sarcocystidae_sp._ROP22, 11 Sarcocystidae_sp._ROP23, 12 Sarcocystidae_sp._ROP24, 13 Sarcocystidae_sp._ROP25, 14 Sarcocystidae_sp._ROP26, 15 Sarcocystidae_sp._ROP28, 16 'Sarcocystidae sp. ROP2-8', 17 Sarcocystidae_sp._ROP30, 18 Sarcocystidae_sp._ROP31, 19 Sarcocystidae_sp._ROP32, 20 Sarcocystidae_sp._ROP33, 21 Sarcocystidae_sp._ROP34, 22 Eucoccidiida_sp._ROP35, 23 Sarcocystidae_sp._ROP36, 24 Sarcocystidae_sp._ROP37, 25 Toxoplasma_gondii_ROP39, 26 Eimeria_tenella_str._Houghton_ROP40, 27 Sarcocystidae_sp._ROP41, 28 'Sarcocystidae sp. ROP42-43-44', 29 Sarcocystidae_sp._ROP45, 30 Sarcocystidae_sp._ROP46, 31 Sarcocystidae_sp._ROP47, 32 'Sarcocystidae sp. ROP4-7', 33 Toxoplasma_gondii_ROP48, 34 Sarcocystidae_sp._ROP49, 35 Sarcocystidae_sp._ROP5, 36 Sarcocystidae_sp._ROP50, 37 'Eimeria tenella str. Houghton ROPK-Eten1', 38 'Eimeria tenella str. Houghton ROPK-Eten2a', 39 'Eimeria tenella str. Houghton ROPK-Eten2b', 40 'Eimeria tenella str. Houghton ROPK-Eten3', 41 'Eimeria tenella str. Houghton ROPK-Eten4', 42 'Eimeria tenella str. Houghton ROPK-Eten5', 43 'Eimeria tenella str. Houghton ROPK-Eten6'; TREE Imported_tree_0 = [&R] (2:0.44409,((21:0.92283,(20:0.79464,22:0.358)55.00:0.54424,(1:1.18704,(30:0.89925,36:1.43406)50.00:0.23933)26.00:0.39054)99.00:1.27789,((37:1.20524,((40:0.8219,(38:0.29872,39:0.31695)79.00:0.15425)81.00:0.17779,(42:0.86594,(41:1.04046,43:0.80272)49.00:0.13802)67.00:0.13643)99.00:0.81339)60.00:0.17893,(9:1.38193,(7:1.24645,(17:1.33458,(8:0.97773,(3:1.22313,25:0.89245)62.00:0.17346)89.00:0.43301)45.00:0.34662,(13:0.95324,15:1.53052,(14:1.65902,(4:1.70425,24:1.11392)58.00:0.26544)25.00:0.13957)45.00:0.41525,((19:0.73636,29:1.26905)61.00:0.29707,(27:0.75424,(33:1.01595,34:1.59064)96.00:0.50833)58.00:0.17009)28.00:0.32948,((10:0.89197,23:0.51595)99.00:0.93025,(5:1.09807,(11:1.36105,18:0.84199)44.00:0.33717,(12:1.12067,26:2.37737,35:1.09095,(28:1.25821,31:0.86948)50.00:0.42567,(6:0.5545,(16:0.87718,32:0.70881)70.00:0.52397)39.00:0.35529)35.00:0.22831)34.00:0.10106)80.00:0.2753)68.00:0.10853)44.00:0.11186)69.00:0.38064)69.00:0.44409); END;