#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 20, 2024; 0:03 GMT TreeBASE (cc) 1994-2008 Study reference: Rychel A., Smith S., Shimamoto H., & Swalla B. 2005. Evolution and Development of the Chordates: Collagen and Pharyngeal Cartilage. Molecular Biology and Evolution, 23: 1-9. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1475] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=27; TAXLABELS Alvinella_pompejana Anopheles_gambiae Apis_mellifera_1 Apis_mellifera_2 Branchiostoma_floridae Ciona_intestinalis_301 Ciona_intestinalis_606 Ciona_intestinalis_759 Ciona_intestinalis_916 Haliotis_discus_1 Haliotis_discus_2 Homo_sapiens_col11a1 Homo_sapiens_col11a2 Homo_sapiens_col1a1 Homo_sapiens_col1a2 Homo_sapiens_col24a1 Homo_sapiens_col27a1 Homo_sapiens_col2a1 Homo_sapiens_col3a1 Homo_sapiens_col5a1 Homo_sapiens_col5a2 Homo_sapiens_col5a3 Hydra_vulgaris Paracentrotus_lividus Saccoglossus_kowalevskii Strongylocentrotus_purpuratus_1 Strongylocentrotus_purpuratus_2 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1045] TITLE Fibrillar_Collagen_Major_Triple_Helical_Domain; LINK TAXA = Taxa1; DIMENSIONS NCHAR=1060; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Alvinella_pompejana ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????------????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????------------------??????????????????????????????????????????????????????GPAGAPGLQGLTGPAGPPGEPGKDGKPGPQGLVGLPGERGKDGEPGPQGPPGPAGSQGERGLPGERGPPGF-GIPGPAGTPGEPGKAGEPGPQGPQGPAGPAGPPGERGLPGERGLMGPRGLPGERGPAGANGEDGQNGKPGAKGEVGPPGIQGLPGLPGERGAKGEAGAPGLQGLPGERGKPGERGKDGEPGHAGAPGLPGPQGPPGSKGERGDHGPRGEPGSPGPAGERGPPGPPAPQGLIGNPGPPGPPGPRGESGPPGDRGLIGPPGLPGERGPSGPPGKEGIQGKPGKRGDRGSPGERGEPGAPGGPGLPGPMGPAGNTGPPGPPGPAGIK---GLRGEP-GKPGRAGDPGTPGTPGMDGTKGERGEDGPPGLPGPTGPPGPQGERGFVGLPGERGEPGPFGAPGPRGEPGAPGEPGDTGPRGERGSPGPSGAPGAPGAAGPEGPPGKDGLPGLAGRPGDKGPPGPPGPPGLAGAPGMQGLRGPPGPTGPGGERGERGEPGAPGVRGPVGPPGPAGAPGQQGSKGERGAAGPKGDKGWPGMPGLQGMQ------GTPGERGEPGPPGPPGADGMRGEPGSRGPPGPRGQDGQPGSPGSPGRRGPPGDDGRPGPPGPPGPPGPPGMM---- Anopheles_gambiae ---GADGPMGLT---GVPGSVGPPGPEGAKGEPGDVGEPGPIGPRGGVGAKGREGRRGRSGRDGERGATGLQGVKGEQGPIGLPGFPGEKGERGRQGASGEKGSQGHDGAQGEDGPPGLPGMPGELGPRGFTGPRGFPGPSGNPGLPGSEGIPGSKGNPGPQGQPGAPGQTGSTGPVGPPGPQGNLGPPGIPGPH------GKP-GLPGLPGADGPPGRDGNPGIAGPKGDVGPQGVQGPIGFPGNRGPKGDDGERGSAGDKGEKGEQGHDGDKGDMGTPGERGHPGVTGAPGSEGPEGPKGFEGPRGETGMMGLTGDKGKQGVQGFPGYPGPPGDKGDK----GSFGMAGLP------------------GEKGERGNTGLQGERGEVGPRGFRGPRGRRGADGATGPKGDTGQPGSPGAQGEIGMQGPEGPRGFIGLPGPPGNNGKDGPPGASGERGPPGENGNPGPIGAPGVVGPQGPTGEPGPVGEPGIPGLPGLPGEPGVPGDTGKEGQSGPPGPPGKNGPQGGQGLPGFPGERGMMGMPGLPGLKGELGLPGLPGPIGDKGQPGEPGKEGPPGAEGRPGPPGPPGPGGAKGERGEQGLVGPVGRDGLPGQRGLAGPPGPVGPPGEDGDKGDMGPPGEKGFKGAQGEAGPVGSPGSQGSRGEPGAVGPQGEKGPPGEIGRTGPKGEDGPTGLPGSPGPAGPQGMPGPPGMKGGRGDDGPPGSIGPAGPPGEPGRRGPRGAEGGPGAPGSPGPQGIAGEPGTQGPP-GPI---GPEGKEGEKGSIGPKGEEGKSGPPGPPGKRGQPGLEGPKGVAGPPGFPGNPGEPGLVGPKGDVGKDGDDGKQGEPGLPGEPGPPGPAGEIGPPGKLGPEGPAGLQGTTGLAGEKGDRGLPGPQGNQGLTGPQGMPGPQGPPGLRGSPGPSGEIGPVGKPGESGAPGKAGEVGTKGPKGDRGRRGLKGHRGELGLVGLKGDA---GEKGDKGVRGLPGPEGSKGEPGPVGPLGLKGNDGPQGPPGNDGPLGPKGTEGVAGLRGEPGPPGPPGPPGPP------- Apis_mellifera_1 ---GSEGPMGLT---GISGPEGPPGPQGQKGEPGEIGEPGPRGERGIPGNTGREGRRGRPGRDGERGLSGAPGMKGEQGVPGLPGLPGDKGERGAVGATGEQGLPGHEGMQGDDGPPGLPGLPGEMGPRGFIGPRGFPGLPGNPGIPGSEGPPGAKGNTGPPGPPGSPGSPGPMGAVGPPGPQGLLGPTGLVGPQ------GKP-GIPGLSGADGSPGHPGNPGIPGTKGEQGLQGSQGPIGFPGVRGIKGDEGKRGSPGERGEKGEKGVEGEKGDVGAKGEPGLSGPQGIPGLEGLEGPKGFEGPRGESGLIGPPGEKGKTGPPGFVGYPGNPGEKGDK----GQSGREGPN------------------GDKGERGTNGAQGERGEPGPRGFRGARGRRGAEGLPGPKGDTGQPGPPGLQGEPGPPGIEGPRGFVGAPGQIGLNGKDGILGPPGERGPVGDSGPPGPPGAPGVIGPQGPAGEPGQPGEPGSPGNPGLPGELGPPGQQGKEGPQGPPGLPGKEGPPGSGGLPGFPGERGLSGLPGMPGIKGEIGPPGLPGPSGDKGVQGEPGKDGEPGPQGSQGSKGPPGPIGLKGDRGEPGAIGPIGRDGLPGQRGLPGSPGPVGVPGEDGDKGDIGPPGEKGFKGSQGEAGPSGPVGIQGIRGEPGAIGLPGEKGPPGEIGRQGAKGEDGPVGASGPPGPVGPQGLPGAQGLKGEVGDTGLVGPVGPAGSPGAQGPRGPKGNEGLQGPPGPEGLQGQKGEAGAPGLP-GLT---GPEGKPGERGPPGPKGEEGKSGPPGPPGERGINGPEGPKGNAGPPGFPGSPGEPGLIGVKGDSGKDGEDGKPGDPGPPGEIGPPGKEGLPGPPGKQGSEGPAGVQGSPGPPGEKGDVGPPGTQGIPGSIGPQGLPGPFGLPGVRGLPGLAGENGPPGMAGAIGAPGKVGPIGPKGPKGDRGKRGLKGHRGELGDAGMKGEE---GEKGEQGPRGVPGSEGPKGNQGPPGSMGFKGNDGPPGLPGMEGLIGPKGSAGNDGPKGETGPPGPPGPPGPP------- Apis_mellifera_2 ---GPVGPRGPPCIIGPPGPSGPQGFQGVRGEPGEPGTPGPPGAPGPRGLPGLTGKDGNTGEDGEPGPPGSVGPVGPRGLPGLPGLPGMKGHRGFPGLDGAKGEQGVSGEKGSMGAPGPMGPIGPIGPAGPRGERGREGPPGPPGIRGVDGISGPPGQPGAVGKPGSPGFPGNPGIKGDQGAQGPKGSQGIQGPR------IGETGRPGQPGESGPQGPQGKDGIPGEKGSTGAPGLVGAPGFPGARGQAGIPGNPGIPGAKGMPGFPGERGFKGDNGVKGDAGIPGPRGLPGPPGNEGKRGKRGMRGPIGTPGPTGERGAPGAPGLPGPDGPMGSKVGQSGDRGPIGPIGPK------------------GVIGDPGRPGSPGLQGTRGLMGRPGAPGKPGNPGERGIQGADGKPGEQGPPGLQGLPGPLGLPGEKGYPGEPGKAGEPGNPGPSGPRGDTGKEGAPGPQGSP---GPSGTDGERGPPGSPGPRGFQGFPGATGNAGTPGKDGEPGVQGPPGSPGVPGNRGERGFPGERGAAGGPGLMGPRGEPGVQGLDGPPGLPGVKGDKGISGPSGLVGLPGLRGAPGESGPKGERGPIGPVGLEGPPGRIGERGPQGQIGPPGPPGEPAERGDPGLPGLPGEIGAPGNSGERGPQGLQGLQGFPGPQGLIGLPGLKGDRGYPGLKGDQGNSGPPGNPGEIGPQGSIGLTGSKGIRGEPGARGEPGIIGPPGVPGNIGAPGPPGAIGPPGLSGLPGSKGNTGEAGRP-GNP---GPIGNPGLPGADGNKGESGSQGPPGIPGPQGPQGSPGERGLPGLPGPSGPIGARGIRGAPGESGTPGKPGPEGPPGLVGQIGPIGPPGPPGEIGAEGSSGKPGPPGIAGRPGDKGPPGAVGQTGLPGSPGLPGPPGQAGSPGSAGERGSKGETGPQGPR------GKPGPIGLQGPKGERGEEGQKGLKGHRGFTGLQGLP---GPTGPPGEKGIPGLPGLPGKDGEPGSRGSPGRDGNPGPIGLIGNPGPKGPPGDEGRHGPPGSPGPPGPPGPPGELGLG- Branchiostoma_floridae -???????????---????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????------????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????---?????????------------------???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????---????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GPNGPAGIPGPLGPPGPAGSAGKQGDRGDTGPPGPSGPTGAMGPRGPAGPSGAPGAKGESGEAGERGPKGHRGFAGLQGLP---GPPGQPGDQGATGPAGPAGQRGSPGGRGPAGPPGNDGQSGPAGMMGPRGRPGQAGPAGMPGPPGPPGPPGPAGDPGGF- Ciona_intestinalis_301 ---GPPGPQGLS---GMTGAAGDMGPAGIKGESGEPGPMGQRGSRGPPGLDGVSGKTGRPGEDGLRGEPGPVGIKGDRGYDGLPGLPGPKGHRGETGGVGPIGPPGVDGEQGEHGEPGPRGLPGEAGPRGELGHKGPPGVSGPPGPRGVHGQQGSKGNLGPQGEPGPPGQQGAPGPQGISGPQGLMGPPGVKGPP------GKS-GLPGIPGADGVPGHPGNEGPSGSKGSQGQFGPQGPQGYPGTRGVKGEGGVRGIKGNKGEKGLDGLAGFKGDMGPKGDGGISGAPGPRGEDGPDGPKGREGPRGEVGPVGLPGEKGKIGLPGILGYPGRSGIKGSL----GKPGKTGHTGLKGDRGTRGTIGRPGLRGLKGKRGLEGKRGQQGQRGPKGPRGKRGPRGSTGKSGPKGDRGQDGPQGPIGERGPPGPRGASGYTGSKGPPGPPGKDGLPGHPGSRGETGFQGKTGPPGPAGVVGPQGPTGENGPSGERGHPGPPGPIGEPGLSGSAGKEGSKGDRGPNGPPGKMGATGSPGFPGSRGPQGPVGAPGLKGNEGPPGPTGPAGVSGQRGPPGPSGQIGPLGRPGSSGPAGPPGENGSPGGPGGPGPAGRDGLQGPVGLPGPPGSIGPRGEDGDKGEAGPPGSTGLKGGKGEHGPPGPPGEQGNSGEPGPAGNDGEPGARGQQGLYGEKGDEGARGFPGPPGPRGLQGIPGTSGNKGDSGDAGPLGPPGPPGQRGPPGVQGADGPLGPPGTYGQPGNVGDKGEPGNVGAP-GIP---GDSGPMGPNGEAGQKGETGPSGPQGENGPKGPRGDDGPKGEPGPIGHPGDPGVAGIPGTMGDEGPPGDVGDTGAPGEPGPPGPIGEVGPSGGPGRRGPAGNPGTEGRSGEKGAKGEAGGIGPVGEPGAHGPQGKHGKQ------------------GCT-ADGPVGPMGPTGLKGIKGEVGPGGEKGHPGLIGLVGPPGEE---GEKGERGPHGRDGPPGVKGDDGRPGPAGPIGPMGPPGLPGGVGMKGNKGSLGPTGPKGDEGIQGPPGPPGPPGEV---- Ciona_intestinalis_606 ---------------------GPPGINGIKGEKGVVGLFGPPGLQGPP------------------GKPGLVGSKGDDGDLGLPGEPGVPGHPGNAGEMGPQGLVGKMGPQGVPGPPGLPGP-GGIGPRGLMGAAGEQGERGIPGVKGDKGGI------------------GAVGIKGEGGSRGLKGSAGP-------------------PGASGEPGRLGRLGSIGEKGALGERGEPGLTGYEGHRGPPGLPGTPGQKGETGEKGMAGSPGSKGEMGKIGKDGPYGKQGPPGRKGHKGIQGLGGIEGPKGLVGAPGERGLPGLEG----------------------------------------------EKGDRGMQPKPGPPGVS------GSKGHTGLTGAVGSPGRPGLPGPPGLLGQRGQQGGIGLPGQKGSDGPVGLEGPQGKKGKIGDQGFMGED------------GPLGPKGERAPEGLPGLQGIRGPEGAEGEKGLAGYPGEPGAPGLEGNPGPLGQMGPYGPHGLPGEPGETGKRGKRGPMGPEGTEGREGIPGPVGPTGDDGKSGLDGVKGEPGEVGVKGEKGSKGDDGGPGLQGAVGLQGLQGIG------------------GTPGKIGVHGLKGIPGKKVSVGDVGAQGHVGLPGSKGKRGARGQSGIKGKRGERGNEGFPGEPGPPGLLGPKGYIGLPGLIGAQ---GEKGIPGIKGISGEDGRRGEQ-------------------------------GVRGLTGKPGKRGETGKPGQVGRHGKPGLKGPKGNPGSAGYPGHFGDRGHPGTRGAAGEQGLTGNQGPHGKPGRQGPPGKTGVKGLHGEPGPRGTIGPAGPDGVRGRDGAPGLRGEPGEHGTFGLPGPRGPMGYAGLPGNPGDRGATG-EGPDGIPGSTGADGKIGPKGYTGLRGYNGEPGEKGKTGEKGRTGPMGIAGLP------------GSYGRKGDPGQRGPSGPVGIHGKDGPRGIQGPMGLKGKNGVIGPAGYRGNHGRPGPPGPPGPA------- Ciona_intestinalis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iona_intestinalis_916 -----------------------------------------------------------------QGNRGLPGPRGVKGVMGKDGAKGQKGEKGEIGFPGPQGEAGPPGRKGANGQRGERGPPGPQGRRGIIGTQGKLGPAGVEGFV-------------------------------------------------------------------------------------------GPLGMPGDRGVRGPAGIKGRNGTRGDPGQTGYRGRYGAIGPSGPPGGYGITGPPGQQGKDGPTGKRGSPGVPG-------------------------------------------------------------QKGDQGLRGRKGPPGIRGKRAKPGIPGPPGYPGDRGGPGRPGRRGIRGPSGIKGFPGLQGPYGPIGDSGEPGSIGPPGMPGRPGKHG------------------------------RHGKRGSRGVRGKPGPKGKHGYEGAVGPKGSKGADGKDGRKGDKGPSGARGPRGNKGLPGAKGRKGVRGLNGQTGLTGIKGVPGSIGYPGYPGPEGEQGPKGFSGSTGGPGLPGDDGPFGIPGSPGGFGIP------------------------GPDGIQGEPGIKGSKGEKGLKGTKGQDGIKGRKGNQGDT-HAGIPGERGIKGFTGGLGESGAIGRKGKQGKKGAAGRKGAQGDPGPPGFKGRPGVPGIKGKKG----------------------------------------KRGPKNVGGTEGPIGTPGPPGARGRPGIPGKQGEKGSTGKKGYLGFKGLVGSKGVSGQEGTKGKKGDQGEVGLTGSKGVLGKSGQKGTSGQPGAQGSTGAKGEQGERGLP--------------------------------GGVPGHAGIDGAIGEPGPPGIPGLQGEKGIRGLKGLP------------------------------GLHGQKGGIGPKGELGLKG-KGKRGPIGIKGPKGEK---------------------------- Haliotis_discus_1 ---GPIGPRGLS---GTPGPPGPQGRRGIRGETGDSGPQGAPGSRGQPGPPGPSGPEGDSGRNGEAGAPGLPGARGPPGPSGMPGLPGGKGHRGFSGFPGKRGEQGISGETGAVGAPGPSGAPGPVGPRGQSGERGQDGSSGQAGLRGVDGLPGQPGSPGAMGGSGPPGSPGMIGAKGDAGAKGPKGGVGPQGPR------GEN-GMPGADGEDGLNGPPGQSGSDGEKGTSGDPGAAGSPGFPGPRGPPGLLGSPGLPGLKGAAGSPGQGGYKGEQGLKGSPGTPGDRGQPGPPGIQGRRGSRGGAGAAGPSGLSGERGLPGARGSPGSPGNAGPKGED-GESGARGERGQT------------------GSMGEAGRPGPPGPPGEAGAVGPAGPDGKSGPPGPSGPSGNDGRPGEMGAPGPSGSPGQQGAQGPTGERGNNGKSGNPGQQGPRGPPGDNGPTGEMGPQGAP---GPEGEPGPRGAEGPPGGPGFQGAPGLPGPPGDAGTEGEPGTPGGPGQAGRTGNRGERGFPGERGPMGPVGEPGAPGPVGPAGNDGERGIPGEIGIQGDLGPQGPMGMPGERGPAGEMGGKGDDGEAGPAGPDGNTGRPGLSGPPGEPGPPGLAGPPAEKGQPGDPGFRGQSGPPGASGERGNAGPDGEPGYPGLPGAAGGAGNKGEAGLPGSKGEQGDGGAAGEPGSQGPSGVPGIQGRKGPRGEQGVAGIPGEPGAPGAPGSQGLSGQQGLPGPAGPAGTPGIKGARGSTGNM-GQA---GKNGAPGQSGSPGQKGNRGEDGSPGSSGPTGPQGASGERGEPGMPGPPGETGPGGPQGPNGARGANGRRGSDGLPGKAGPPGPVGGPGSNGPTGPSGAPGADGAPGLPGRQGEAGIIGDAGRVGPSGLPGLQGPAGPSGPVGEAGVRGERGAIGPLGPRGPQGLRGSPGVQGEQGVDGEEGDAGKNGDKGDPGYMGLPGLP---GPEGPIGENGPPGPRGPAGERGNDGTRGQPGPAGEDGPGGPRGAPGPRGPSGEDGRRGSAGLPGNPGPPGPPGES---- Haliotis_discus_2 ---GAPGPRGPP---GPPGQPGPQGFQGMRGESGDPGPPGSTGQRGFAGPPGSPGLDGEEGMPGDPGPAGPLGSPGSSGRPGMPGMPGPKGHRGPSGRPGRDGEAGKQGDKGIPGAAGPPGSSGPQGPRGSPGERGRDGSPGSPGIRGEDGMAGNPGSVGPIGPPGPPGFPGSSGAKGDAGQSGDRGPMGSSGAP------GNN-GAAGQPGQPGRPGSPGDDGNPGTKGEMGPAGGPGSPGFPGPQGPPGAAGAQGAAGNKGDQGRDGSPGSQGEVGAAGQPGAQGERGLPGLPGQEGKRGPLGAGGPPGPPGPSGERGLPGTPGMSGRPGAAGVAGKD-GARGLQGERGEA------------------GQQGVAGAPGSAGQTGARGAPGFPGADGAPGERGPAGNPGVDGNPGEQGPQGIQGPPGLQGPSGNKGDTGPSGKDGDVGRPGAVGPRGERGPAGEAGLEGPP---GSPGAEGEIGAAGRPGEQGFQGLPGPAGPPGEAGRPGPVGESGIPGEPGASGERGERGAPGEVGVSGSRGAPGERGPSGPSGEVGQAGPPGPAGARGDAGAQGLIGMPGERGPIGRNGPQGNRGLTGERGQDGEPGRPGEAGAPGSPGQPGPSGLVSAKGDRGEAGPAGEPGPPGSSGQRGPAGAQGPQGPTGLSGPTGEMGQTGSDGKDGAKGDTGARGYPGEAGPIGAPGNEGREGRKGSRGSGGIPGNSGTPGDPGRAGPPGSPGAQGPPGPSGATGLSGDGGERGETGPP-GRS---GEPGAPGMPGLDGAQGERGSPGLNGPSGPPGPVGPQGERGANGFPGSQGEAGAAGPPGSAGEPGLRGDNGNDGAPGQAGPPGPTGPAGYPGETGQPGSPGKDGPLGPVGRSGAKGARGPAGASGPPGLNGPVGAPGNSGPPGPSGERGERGEVGPSGPAGLTGQRGPAGARGAAGDKGESGWDGAKGDKGWPGMPGPQGPP---GPLGSNGDPGPPGPPGVAGQNGKSGSRGRPGRSGSPGQQGPAGPAGARGPSGDDGLTGPAGPSGPPGPPGPPGYG---- Homo_sapiens_col11a1 ---GPPGPMGLT---GRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQ------GKP-GLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIG?PGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRG?DGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGST----GFPGFPGAN------------------GEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGRMGCPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGYPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLRGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGGKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPWGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNP-GPP---GEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGELGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQ---GEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGPPGPPGEV---- Homo_sapiens_col11a2 ---GPPGPMGYT---GRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGSLGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQ------GKP-GLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSL----GFPGFPGAS------------------GEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPLGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGRQGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSP-GIQ---GEPGVKGPRGERGEKGESGQPGEPGPPGAKGPQGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQ---GEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEV---- Homo_sapiens_col1a1 GPMGPSGPRGLP---GPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVR------GEP-GPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPA-GERGSPGPAGPK------------------GSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPP---GPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPA-GRP---GEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPAAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPP---GPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPP------- Homo_sapiens_col1a2 GPMGLMGPRGPP---GAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPR------GEV-GLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPP-GSRGASGPAGVR------------------GPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPP---GPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPV-GRT---GEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLP---GIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAGPPGPPGPPGPPGVSGGG---- Homo_sapiens_col24a1 ------GPKGDT---GPPGPPGPAGIPGPSGKRGPRGIPGPHGNPGLPGLPGPKGPKGDPGFSPGQSVPGEKGDQGLSGLMGPPGMQGDKGLKGHPGLPGLPGEQGIPGFAGNIGSPGYPGRQGLAGPEGNPGPKGAQGFIGSPGEA---------GQLGPEGERGIPGIRGKKGFKGRQGFPGDF------GDR-------------GPAGLDGSPGLVGGTGPPGFPGLRGSVGPVGPIGPAGIPGPMGLSGNKGLPGIKGDKGEQGTAGELGEPGYSGDKGAVGLPGPPGMRGKSGPSGQTGDPGLQGPSGPPGPEGFPGDIGIPGQNGPEGPKGLL----GNRGPPGPP------------------GLKGTQGEEGPIGAFGELGPRGKPGQKGYAGEPGPEGLKGEVGDQGNIGKIGETGPVGLPGEVGMTGSIGEKGERGSPGPLGPQGEKGVMGYPGPPGVPGPIGPLGLPGHVGARGPPGSQGPKGQRGSRGPDGLLGEQGIQGAKGEKGDQGKRGPHGLIGKTGNPGERGFQGKPGLQGLPGSTGDRGLPGEPGLRGLQGDVGPPGEMGMEGPPGTEGESGLQGEPGAKGDVGTAGSVGGTGEPGLRGEPGAPGEEGLQGKDGLKGVPGGRGLPGEDGEKGEMGLPGIIGPLGRSGQTGLPGPEGIVGIPGQRGRPGKKGDKGQIGPTGEVGSRGPPGKIGKSGPKGARGTRGAVGHLGLMGPDGEPGIPGYRGHQGQPGPSGLPGPKGEKGYPGEDSTVLGPP---GPRGEPGPVGDQGERGEPGAEGYKGHVGVPGLRGATGQQGPPGEPGDQGEQGLKGERGSEGNKGKKGAPGPSGKPGIPGLQGLLGPKGIQGYHGADGISGNPGKIGPPGKQGLPGIRGGPGRTGLAGAPGPPGVKGSSGLPGSPGIQGPKGEQGLPGQPGIQGKRGHRGAQGDQGPCGDPGLKGQPGEYGVQGLTGFQGFP---GPKGPEGDAGIVGISGPKGPIGHRGNTGPLGREGIIGPTGRTGPRGEKGFRGETGPQGPRGQPGPPGPPGAPGPR---- Homo_sapiens_col27a1 ---GPPGPKGDC---GLPGPPGLPGLPGIPGARGPRGPPGPYGNPGLPGPPGAKGQKGDPGLSPGKAHDGAKGDMGLPGLSGNPGPPGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKGYPGRQGLPGPVGDPGPKGSRGYIGLPGLF---------GLPGSDGERGLPGVPGKRGKMGMPGFPGVF------GER-------------GPPGLDGNPGELGLPGPPGVPGLIGDLGVLGPIGYPGPKGMKGLMGSVGEPGLKGDKGEQGVPGVSGDPGFQGDKGSQGLPGFPGARGKPGPLGKVGDKGSIGFPGPPGPEGFPGDIGPPGDNGPEGMKGKP----GARGLPGPR------------------GQLGPEGDEGPMGPPGAPGLEGQPGRKGFPGRPGLDGVKGEPGDPGRPGPVGEQGFMGFIGLVGEPGIVGEKGDRGMMGPPGVPGPKGSMGHPGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGPQGRPGRPGQQGVAGERGHLGSRGFPGIPGPSGPPGTKGLPGEPGPQGPQGPIGPPGEMGPKGPPGAVGEPGLPGEAGMKGDLGPLGTPGEQGLIGQRGEPGLEGDSGPMGPDGLKGDRGDPGPDGEHGEKGQEGLMGEDGPPGPPGVTGVRGPEGKSGKQGEKGRTGAKGAKGYQGQLGEMGVPGDPGPPGTPGPKGSRGSLGPTGAPGRMGAQGEPGLAGYDGHKGIVGPLGPPGPKGEKGEQGEDGKAEGPP---GPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQPGHPGPRGWPGPKGSKGAEGPKGKQGKAGAPGRRGVQGLQGLPGPRGVVGRQGLEGIAGPDGLPGRDGQAGQQGEQGDDGDPGPMGPAGKRGNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGRTGLPGNQGEPGSKGQPGDSGEMGFPGMAGLF---GPKGPPGDIGFKGIQGPRGPPGLMGKEGIVGPLGILGPSGLPGPKGDKGSRGDWGLQGPRGPPGPRGRPGPPGPPGGPI Homo_sapiens_col2a1 GPMGPMGPRGPP---GPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPR------GEP-GTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPDPQGATGPLGPKGQTGKPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAP-GERGPSGLAGPK------------------GANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAEGPP---GPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGTSGIAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPP-GRA---GEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGQQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLP---GPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPG---- Homo_sapiens_col3a1 ---GPPGPPGTS---GHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQR------GEP-GPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPA-GERGAPGPAGPR------------------GAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPP---GPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAP-GSP---GVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAP---GSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPC- Homo_sapiens_col5a1 ---GPAGPMGLT---GRPGPVGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPL------GKP-GLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSI----GFPGFPGAN------------------GEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEP-GPS---GRSGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQ---GEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAGHPGPPGPPGPPGEV---- Homo_sapiens_col5a2 GSVGPVGPRGPQ---GLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQR------GET-GPPGPVGSPGLPGAIGTDGTPGPKGPTGSPGTSGPPGSAGPPGSPGPQGST---GPQGNSGLPGDPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTLGPPGPVGERGAPGNRGFPGSDGLPGPKGAQ-GERGPVGSSGPK------------------GSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIKGQPGTMGLPGPKGSNGDPGKPGEAGNPGVPGQRGAPGKDGKVGPYGPP---GPPGLRGERGEQGPPGPTGFQGHPGPPGPPGEGGKPGDQGVPGGPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGAGGLPGPLGPPGPAGLLGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGSDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGPRGDPGSH-GRV---GVRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGHLGRAGKRGLPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLP---GPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPLGPPGVRGSVGEAGPEGPPGEPGPPGPPGPPGHL---- Homo_sapiens_col5a3 ---GPPGPVGLT---GRPGPVGLPGHPGLKGEEGAEGPQGPRGLQGPHGPPGRVGKMGRPGADGARGLPGDTGPKGDRGFDGLPGLPGEKGQRGDFGHVGQPGPPGEDGERGAEGPPGPTGQAGEPGPRGLLGPRGSPGPTGRPGVTGIDGAPGAKGNVGPPGEPGPPGQQGNHGSQGLPGPQGLIGTPGEKGPP------GNP-GIPGLPGSDGPLGHPGHEGPTGEKGAQGPPGSAGPPGYPGPRGVKGTSGNRGLQGEKGEKGEDGFPGFKGDVGLKGDQGKPGAPGPRGEDGPEGPKGQAGQAGEEGPPGSAGEKGKLGVPGLPGYPGRPGPKGSI----GFPGPLGPI------------------GEKGKSGKTGQPGLEGERGPPGSRGERGQPGATGQPGPKGDVGQDGAPGIPGEKGLPGLQGPPGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQTGPPGPAGVLGPQGKTGEVGPLGERGPPGPPGPPGEQGLPGLEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSRGERGPPGPTGKDGIPGPLGPLGPPGAAGPSGEEGDKGDVGAPGHKGSKGDKGDAGPPGQPGIRGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQGLPGPPGEKGEVGDVGSMGPHGAPGPRGPQGPTGSEGTPGLPGGVGQPGAVGEKGERGDAGDP-GPP---GAPGIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAKGSVGPTGLPGDLGPPGDPGVSGIDGSPGEKGDPGDVGGPGPPGASGEPGAPGPPGKRGPSGHMGREGREGEKGAKGEPGPDGPPGRTGPMGARGPPGRVGPEGLRGIPGPVGEPGLLGAPGQMGPPGPLGPSGLPGLKGDTGPKGEKGHIGLIGLIGPPGEA---GEKGDQGLPGVQGPPGPKGDPGPPGPIGSLGHPGPPGVAGPLGQKGSKGSPGSMGPRGDTGPAGPPGPPGAP------- Hydra_vulgaris ---GPPGPPGNQ---GPIGPPGPKGFNGETGETGISGPRGLTGDPGNVGPKGLRGKDGREGQKGEPGSKGLMGVTGNPGPSGPPGQRGIKGVKGELGEPGPKGAKGDVGQNGEAGENGLPGIKGDTGARGPNGTIGFQGAAGPEGLMGPSGPTGPDGVKGPQGPRGSDGQQGTAGLAGESGDPGPSGPVGQPGQRGEPGYPGIR-GDSGDRGDTGPQGLDGLDGPPGDRGLPGPVGLPGAPGPVGERGEPGKQGPRGFPGQQGEQGSPGIPGVVGEAGDKGPRGLQGQVGVAGPPGESGSDGRPGPPGPNGAPGQRGNQGLPGSPGLPGLPGIKGHIGEK----GFTGPIGEK------------------GNRGEPGRTGQMGIPGARGPVGDPGPVGLDGKEGERGIPGKDGLPGPPGQAGLRGIPGLQGATGEKGDKGFKGNKGEIGFDGAPGDKGETGDVGDQGAPGLP---GKQGEAGEPGEQGNRGAQGFVGLPGAPGPQGRQGKRGTPGTPGSRGADGLPGRPGERGYSGEQGTPGSPGVIGEPGRKGPPGKQGHKGAQGDIGMPGEAGSPGEIGVAGIPGPQGNPGLPGDEGEIGEAGDRGRDGQPGGRGAPGPRGKPGLPGNPGLRGDTGVSGEDGKPGEIGVPGAPGNPGDIGQPGSQGPMGKPGNPGMQGDVGPKGFKGARGPRGRPGKIGQIGEIGKKGESGEKGDQGLPGLQGAIGIPGNQGLPGLAGSAGEQGPQGPPGPDGKLGPKGDKGRSGPD-GRP---GSPGRPGPDGINGVNGQPGKDGSRGPQGHQGPRGKQGNIGPIGLPGTSGMPGLPGPRGPTGDNGADGSDGSDGDIGDDGQVGSQGPQGESGADGSNGAPGRNGNPGVPGPRGEKGEKGPSGDVGVKGAKGNVGPAGEPGVRGDRGPSGEPGTDGEKGETGIKGDEGSPGPTGATGDRGDNGQRGDQGDTGYMGFKGRKGPTGPKGLKGMPGIIGEQGDMGPKGVIGEPGPQGAPGPPGQIGLPGRKGPIGEPGLKGFQGRDGRQGAPGPSGPPGPPGPA---- Paracentrotus_lividus ---GPPGMPGYA---GTRGSRGAAGMRGPSGPSGPTGIIGKPGPRGTRGEDGPDGDNGKNGSPGQIGFPGEPGRGGSAGAPGRPGGFGHKGWTGMFGRKGARGEKGTGGARGEDGVNGMVGAIGNAGARGMPGSTGQTGSKGIVGERGETGEEGDQGNVGNTGPMGTPGAVGLTGAKGHVGESGTQGPTGTVGLL------GET-GKRGAHGLAGAPGIPGVNGDSGRYGDAGSQGDIGMPGQPGAPGVQGPTGIEGIDGERGNTGLQGFIGAAGNRGPAGARGGVGLMGAPGPVGSQGEEGEQGLTGSTGPRGLAGAAGPSGGPGLLGANGVKGQMGDA----GEAGSTGAP------------------GEAGTRGTPGTPGTPGSTGENGIPGEDGLSGSDGKTGPTGSQGKDGPPGQTGERGGTGPPGQQGAPGLQGEQGFSGSRGAPGAPGSRGEAGEEGEPGPAGQVGLPGPNGRRGDDGDQGLGGTPGTQGPPGMDGNTGLRGSRGDRGPPGPTGTMGVTGEVGEQGLRGASGLQGPGGLVGERGIDGRAGRQGEVGLTGGSGVMGPPGLRGLQGPPGLRGGVGPTGSMGEDGDIGVSGQQGETGRTGERGSQGPPGPTGPSGMGGDNGETGGPGLNGADGAKGQRGQLGEKGTSGPRGIPGNPGPGGAP---GDRGPAGNAGEKGEAGPSGVQGRVGRSGPVGLPGARGSRGESGIEGSTGPMGSPGMNGPTGPRGEQGPPGNSGPNGKTGDAGQQGSRGPI-GNPGLMGERGMVGLQGPRGAAGETGRDGNMGPRGPVGSAGTPGTLGPGGIAGLTGPPGAAGSPGRPGSEGAEGIAGGDGERGDDGSKGPPGPQGARGLSGGNGRDGKDGKSGPKGLKGSRGDTGARGSDGVPGISGPRGSIGAVGAQGDRGHRGKTGQQGPVGIAGDDGKNGPVGPSGPAGPGGETGSSGPSGHKGEN---GMPGAP---GAGGKAGETGPRGESGSDGVRGMPGNNGANGKNGKEGPRGPPGLRGAYGTRGDRGELGVAGQPGPPGPPGPPGEV---- Saccoglossus_kowalevskii ????????????---????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????------????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-???????????------------------???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????---????????????????????????????????????????????????????????????????????????????????????????????????GVSGKDGIPGVQGRPGIKGDRGNTGSPGPAGMSGPMGAPGPSGEAGPQGPTGDPGPSGPVGPEGARGSRGPSGEPGIAGAPGDAGIQGARGAKGHRGFPGLQGIP---GSMGVPGEDGMTGPPGPNGPRGATGPRGSPGLNGKDGPMGQPGPEGPRGSRGDRGDSGTSGPPGPPGPPGPPGDA---- Strongylocentrotus_purpuratus_1 ---GTPGPRGPP---GPPGSRGPQGLTGPSGPSGETGPSGNSGPPGPSGLPGRPGSDGDDGTPGSQGQRGPAGTPGSRGTPGMPGAPGMKGHQGLPGMTGSKGERGEGGERGSDGSPGPVGAPGPAGPSGQPGERGRTGPAGSQGDRGADGATGSQGPPGSTGPAGAPGMPGISGAKGDAGSPGARGSPGLQGAR------GER-GSEGSQGQTGPPGVPGRDGSNGAKGSAGPSGAQGTPGFPGARGPPGPAGSPGPAGSKGDQGNPGQPGAQGESGPLGPRGETGPAGPPGAQGESGERGSRGALGPAGPPGGVGERGPMGPPGMSGAPGAPGAKGDR-GLPGERGSAGSK------------------GSAGESGRPGEPGMPGQRGLTGPPGKQGRDGKPGPAGAPGEPGNSGPAGASGQRGLPGLVGLPGPQGQRGERGEDGGQGSPGAPGLTGEPGKRGEPGVAGPP---GPQGSAGERGNQGPQGQAGSMGPPGPPGASGDAGAQGDNGPPGESGPEGPPGARGERGAPGERGPQGLTGAQGRRGIGGRAGNYGATGPPGQKGEMGPPGNVGLQGPPGELGPSGPPGARGPPGPSGSPGPDGPAGAEGDRGPVGPMGPSGPSGMPGERGDNGEPGPGGAPGQRGDPGDLGPQGSPGSPGFAGPPGRSGNPGPQGELGPTGARGETGGPGPSGPTGDPGPQGPLGAPGQQGERGETGPQGQGGPPGPIGSLGAPGAQGPPGPTGPSGNAGSPGQPGARGEPGQS-GSP---GQPGLAGRTGPSGERGDKGNDGQSGPPGPPGPAGPAGQSGILGLAGGSGPRGPGGPAGPPGAAGSRGPAGKSGDRGSPGAVGPAGNPGPAGENGMPGSDGNDGAPGPQGSRGEKGDTGASGANGSPGAPGPIGAPGAAGASGPRGETGSTGAPGPLGPTGARGSTGPAGPSGPSGPAGERGETGPAGHKGHPGVSGLPGLQ---GTSGPMGEPGAPGEQGQQGTRGLPGARGSNGNDGPSGPRGFDGPEGPRGPRGEGGSSGPPGPPGPPGPPGPPGQV---- Strongylocentrotus_purpuratus_2 ---GRPGSAGYS---GHRGARGPQGLTGPMGPQGSAGPMGMSGPRGARGEDGEDGNDGQNGRQGEIGLVGISGRPGLGGMHGMSGNPGHKGWGGRHGAPGAAGERGEAGEGGNMGATGPVGAVGNPGQRGPSGSRGGAGSKGPMGDSGERGSNGEQGPTGNMGPLGPSGLPGANGATGDSGMQGGQGSSGPVGLV------GES-GSRGKSGSAGAPGIPGSSGDSGIIGEMGIQGEVGGPGRNGAPGLQGSIGPVGIGGERGDAGLPGYMGLTGSRGPAGPSGARGIGGEPGPAGNSGSEGETGSTGPSGPRGPMGELGMGGGPGMLGAPGNSGFMGDQ----GESGEQGSP------------------GEPGSRGTNGEPGTPGQTGPNGAPGEDGLAGNDGKTGATGTPGRSGPPGANGDRGGMGPPGAQGPPGIGGETGFNGNTGIQGTPGTRGEAGVDGEPGAAGQSGLPGSPGNRGDSGTQGPVGIGGSQGAPGQPGLTGTRGARGNNGPSGPRGGLGVSGDAGEQGLRGAAGLQGASGIVGERGTEGRSGRNGEVGPTGIGGSMGQPGLRGLPGPPGLRGGVGGLGEMGTQGDRGPSGPSGPSGRTGEAGGLGPLGPMGVTGQRGDNGNPGDPGPNGPSGLKGTRGAGGEKGSMGSRGIPGNPGPGGAP---GERGPSGLNGEKGEAGPFGSQGRPGRSGPQGNMGARGERGETGNQGALGPSGSAGMNGPPGVVGEPGPTGPVGPTGRSGEDGRMGSRGPQ-GNQGVRGPPGVQGLMGSQGSSGEDGRDGHVGPPGPMGSVGQAGNLGNLGSHGFMGPPGPAGPQGRPGVSGEAGRDGANGERGEGGRMGPSGPVGVRGMPGSDGRDGKDGPAGPVGLVGGRGDTGAKGNNGMNGLMGPRGPSGIMGAQGERGNRGKQGAQGSVGNVGESGGTGPMGSMGPAGARGEVGSQGATGHKGQN---GMPGMP---GMMGVAGEPGNNGEGGPQGIRGIPGVVGEGGKSGRGGPRGPPGLRGGNGGRGERGNLGPSGPPGPAGPPGPPGEV---- ; END; BEGIN TREES; TITLE Tb7639; LINK TAXA = Taxa1; TRANSLATE 1 Strongylocentrotus_purpuratus_2, 2 Strongylocentrotus_purpuratus_1, 3 Saccoglossus_kowalevskii, 4 Paracentrotus_lividus, 5 Hydra_vulgaris, 6 Homo_sapiens_col5a3, 7 Homo_sapiens_col5a2, 8 Homo_sapiens_col5a1, 9 Homo_sapiens_col3a1, 10 Homo_sapiens_col2a1, 11 Homo_sapiens_col27a1, 12 Homo_sapiens_col24a1, 13 Homo_sapiens_col1a2, 14 Homo_sapiens_col1a1, 15 Homo_sapiens_col11a2, 16 Homo_sapiens_col11a1, 17 Haliotis_discus_2, 18 Haliotis_discus_1, 19 Ciona_intestinalis_916, 20 Ciona_intestinalis_759, 21 Ciona_intestinalis_606, 22 Ciona_intestinalis_301, 23 Branchiostoma_floridae, 24 Apis_mellifera_2, 25 Apis_mellifera_1, 26 Anopheles_gambiae, 27 Alvinella_pompejana; TREE Fig._5B = [&R] ((((26,25),(6,(22,(8,(16,15))))),21,19,(11,12)),(5,(24,(18,(17,27))),((2,(1,4)),((3,23),(20,(9,((10,7),(14,13)))))))); END; BEGIN TREES; TITLE Tb7638; LINK TAXA = Taxa1; TRANSLATE 1 Strongylocentrotus_purpuratus_2, 2 Strongylocentrotus_purpuratus_1, 3 Saccoglossus_kowalevskii, 4 Paracentrotus_lividus, 5 Hydra_vulgaris, 6 Homo_sapiens_col5a3, 7 Homo_sapiens_col5a2, 8 Homo_sapiens_col5a1, 9 Homo_sapiens_col3a1, 10 Homo_sapiens_col2a1, 11 Homo_sapiens_col27a1, 12 Homo_sapiens_col24a1, 13 Homo_sapiens_col1a2, 14 Homo_sapiens_col1a1, 15 Homo_sapiens_col11a2, 16 Homo_sapiens_col11a1, 17 Haliotis_discus_2, 18 Haliotis_discus_1, 19 Ciona_intestinalis_916, 20 Ciona_intestinalis_759, 21 Ciona_intestinalis_606, 22 Ciona_intestinalis_301, 23 Branchiostoma_floridae, 24 Apis_mellifera_2, 25 Apis_mellifera_1, 26 Anopheles_gambiae, 27 Alvinella_pompejana; TREE Fig._5A = [&R] ((((26,25),((((8,15),16),6),22)),(5,((21,(11,12)),19))),(((((((14,13),(10,23)),7),20),9),((1,4),2),3),(((18,17),27),24))); END;