#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 25, 2024; 5:43 GMT TreeBASE (cc) 1994-2008 Study reference: Ohkuma M., Saita K., Inoue T., & Kudo T. 2006. Comparison of four protein phylogeny and detailed analysis based on glycelaldehyde-3-phosphate dehydrogenase sequences of parabasalian symbionts in termite guts. Molecular Phylogenetics and Evolution, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1521] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=19; TAXLABELS Devescovina_sp._D14 Devescovina_sp._D16 Holomastigotoides_mirabile_04A74 Hypotrichomonas_acosta_2 Hypotrichomonas_acosta_3 Monocercomonas_sp._1 Monocercomonas_sp._2 Pseudotrichonympha_grassii_02A38 Spirotrichonympha_leidyi_Sp28 Stephanonympha_sp._St19 Stephanonympha_sp._St20 Tetratrichomonas_gallinarum_1 Tetratrichomonas_gallinarum_2 Tetratrichomonas_gallinarum_3 Trichomitus_batrachorum_1 Trichomitus_batrachorum_2 Trichomonas_vaginalis Trichonympha_agilis Tritrichomonas_foetus ; END; BEGIN TAXA; TITLE Taxa2; DIMENSIONS NTAX=18; TAXLABELS Devescovina_sp._D75 Devescovina_sp._D77 Holomastigotoides_mirabile_02A21 Hypotrichomonas_acosta Monocercomonas_sp. Pseudotrichonympha_grassii_06B88 Spirotrichonympha_leidyi_13A66 Stephanonympha_sp._St01 Stephanonympha_sp._St03 Stephanonympha_sp._St08 Tetratrichomonas_gallinarum Trichomitus_batrachorum_1 Trichomitus_batrachorum_2 Trichomonas_vaginalis_1 Trichomonas_vaginalis_2 Trichonympha_agilis Tritrichomonas_foetus_1 Tritrichomonas_foetus_2 ; END; BEGIN TAXA; TITLE Taxa3; DIMENSIONS NTAX=20; TAXLABELS Arabidopsis_thaliana Chlamydomonas_reinhardtii Devescovina_sp. Guillardia_theta Holomastigotoides_mirabile Homo_sapiens Hypotrichomonas_acosta Monocercomonas_sp. Pseudotrichonympha_grassii Saccharomyces_cerevisiae Spironucleus_barkhanus Spirotrichonympha_leidyi Stephanonympha_sp. Tetratrichomonas_gallinarum Toxoplasma_gondii Trichomitus_batrachorum Trichomonas_vaginalis Trichonympha_agilis Tritrichomonas_foetus Trypanosoma_brucei ; END; BEGIN TAXA; TITLE Taxa4; DIMENSIONS NTAX=19; TAXLABELS Devescovina_sp._D31 Holomastigotoides_mirabile_H53 Hypotrichomonas_acosta_1 Hypotrichomonas_acosta_2 Monocercomonas_sp._1 Monocercomonas_sp._2 Pseudotrichonympha_grassii_06B34 Pseudotrichonympha_grassii_07A70 Spirotrichonympha_leidyi_09B45 Stephanonympha_sp._St07 Stephanonympha_sp._St13 Tetratrichomonas_gallinarum Trichomitus_batrachorum_1 Trichomitus_batrachorum_2 Trichomonas_vaginalis_1 Trichomonas_vaginalis_2 Trichomonas_vaginalis_4 Trichonympha_agilis Tritrichomonas_foetus ; END; BEGIN TAXA; TITLE Taxa5; DIMENSIONS NTAX=18; TAXLABELS Devescovina_sp._D01 Devescovina_sp._D10 Holomastigotoides_mirabile_03B79 Hypotrichomonas_acosta Monocercomonas_sp._1 Monocercomonas_sp._2 Pseudotrichonympha_grassii_03A54 Spirotrichonympha_leidyi_02A66 Stephanonympha_sp._St10 Stephanonympha_sp._St48 Tetratrichomonas_gallinarum Trichomitus_batrachorum Trichomonas_vaginalis_1 Trichomonas_vaginalis_2 Trichonympha_agilis_1 Trichonympha_agilis_2 Tritrichomonas_foetus_1 Tritrichomonas_foetus_2 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1129] TITLE Fig2C; LINK TAXA = Taxa1; DIMENSIONS NCHAR=380; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Devescovina_sp._D14 IGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGGKYVPRAILVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELAESILDVIRKEAESCDALQGFQLVHSLGGGTGSGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCALRFPGQLNADLRKLAVNLVPFPRLHFFICGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPNNVKSSICDIPPRGLKMASTFIGNTTAFRELFTRVDNQFSKMYARRAFI Devescovina_sp._D16 IGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGGKYVPRAILVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELAESILDVIRKEAESCDALQGFQLVHSLGGGTGSGFGTLLLNKLREEYPDRILSTYTIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCALRFPGQLNADLRKLAVNLVPFPRLHFFICGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPNNVKSSICDIPPRGLKMASTFIGNTTAFRELFTRVDNQFSKMYARRAFI Holomastigotoides_mirabile_04A74 IGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGGKYVPRAILVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELCESILDVIRKEAESCDALQGFQLCHSLGGGTGSGLGTLLLNKLREEYPDRILSTYSVVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVTMVMSGTTCSLRFPGQLNADLRKLAVNLVPFPRLHFFICEFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPSNVKSSICDIPPRGLKMAATFIGNTTAFRELFTRVDAQFQKMYARRAFI Hypotrichomonas_acosta_2 IGAKFWEVVSDEHGIDPTGSYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELCESILDVVRKEAESCDALQGFQLVHSLGGGTGAGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCSLRFPGRLNSDLRKLAVNLVPFPRLHFSIVGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPSNVKSSITDIPPRGLKMAATFIGNTTAFRELFTRVDSQFQKMYARRAFI Hypotrichomonas_acosta_3 IGAKFWEVVSDEHGIDPTGSYHGDSDLQLERINVYYNEATSGKYVPRAVLVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELCESILDVVRKEAESCDALQGFQLVHSLGGGTGAGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCSLRFPGQLNSDLRKLAVNLVPFPRLHFFIVGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPSNVKSSITDIPPRGLKMAATFIGNTTAFRELFTRVDSQFQKMYARRAFI Monocercomonas_sp._1 IGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELAESILDVIRKEAESCDALQGFQLVHSLGGGTGSGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCSLRFPGQLNADLRKLAVNLVPFPRLHFFIVGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPNNVKSSICDIPPRGLKMAATFIGNTTAFRELFTRVDSQFQKMYARRAFI Monocercomonas_sp._2 IGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELAESILDVIRKEAESCDALQGFQLVHSLGGGTGSGLGTLLLNKLREEYPDHILFTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCSLRFPGQLNADLRKLAVNLVPFPRLHFFIVGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPNNVKSSICDIPPRGLKMAATFIGNTTAFRELFTRVDSQFQKMYARRAFI Pseudotrichonympha_grassii_02A38 IGAKFWEVVSDEHGIDPTGSYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRAGQFGQLFRPDNFVFGQSGAGNNWAKGFYTEGQELCESILDVVRKEAESCDALQGFQLVHSLGGGTGAGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCSLRFPGQLNADLRKLAVNLVPFPRLHFFICGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPNNVKCSITDIPPRGLKMAATFIGNSTSFRELFTRVDSQFTKMYARRAFI Spirotrichonympha_leidyi_Sp28 IGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYFNEATGGKYVPRAILVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELCESILDVIRKEAESCDALQGFQLTHSLGGGTGSGLGTLLLNKLREEYPDRILSTYSVVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVTMVMSGTTCSLRFPGQLNADLRKLAVNLVPFPRLHFFICGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPSNVKSSICDIPPRGLKMAATFIGNTTAFRELFTRVDAQFQKMYARRAFI Stephanonympha_sp._St19 IGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGGKYVPRAILVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQEPCESILDVIRKEAESCDALQGFQLVHSLGGGTGSGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCSLRFPGQLNADLRKLAVNLVPFPRLHFFICGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPNNVKSSICDIPPRGLKMAATFIGNTTAFRELFTRVDSQFSKMYARRAFI Stephanonympha_sp._St20 IGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGGKYVPRAILVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELCESILDVIRKEAESCDALQGFQLVHSLGGGTGSGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCSLRFPGQLNADLRKLAVNLVPFPRLHFFICGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPNNVKSSICDIPPRGLKMAATFIGNTTAFRELFTRVDSQFSKMYARRAFI Tetratrichomonas_gallinarum_1 IGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYFNEATGGKYVPRAILVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELCESILDVIRKEAESCDALQGFQLVHSLGGGTGAGLGTLLLNKLREEYPDRILCTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICLRTLKLTTPTYGDLNHLVSMVMSGSTCSLRFPGQLNSDLRKLAVNLVPFPRLHFFIVGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTCSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPSNVKCAICDIPPRGLKMAATFIGNTTAFRELFTRVDSQFQKMYARKAFI Tetratrichomonas_gallinarum_2 IGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYFNEATGGKYVPRAILVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELCESILDVIRKEAESCDALQGFQLVHSLGGGTGAGLGTLLLNKLREEYPDRILCTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGSTCSLRFPGQLNSDLRKLAVNLVPFPRLHFFIVGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTCSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPSNVKCAICDIPPRGLKMAATFIGNTTAFRELFTRVDSQFQKMYARKAFI Tetratrichomonas_gallinarum_3 IGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYFNEATGGKYVPRAILVDLEPGTMDSVRAGQYGQLFRPDNLVFGQSGAGNNWAKGYYTEGQELCESILDVIRKEAESCDALQGFQLVHSLGGGTGAGLGTLLLNKLREEYPDRILCTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGSTCSLRFPGQLNSDLRKLAVNLVPFPRLHFFIVGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTCSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPSNVKCAICDIPPRGLKMAATFIGNTTAFRELFTRVDSQFQKMYARKAFI Trichomitus_batrachorum_1 -------VISDEHGIDPTGSYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELCESILDVIRKEAESCDALQGFQLVHSLGGGTGSGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCALRFPGQLNSDLRKLAVNLVPFPRLHFFICGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPNNVKSSICDIPPRGLKMAATFIGNTTAFRELFTRVDGQLQKMYARRAFI Trichomitus_batrachorum_2 IGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELCESILDVIRKEAESCDALQGFQLVHSLGGGTGSGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSDTTCALRFPGQLNSDLRKLAVNLVPFPRLHFFICGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPNNVKSSICDIPPRGLKMAATFIGNTTAFRELFTRVDGQFQKMYARRAFI Trichomonas_vaginalis IGAKFWEVISDEHGIDPTGSYHRDSDLQLERINVYYNEATGAKYVPRAILVDLEPGTSESVRAGQFGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELCESILDVIRKEAESCDCLQGFQLVHSLGGGTGAGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCALRFPGQLNSDLRKLAVNLVPFPRLHFFIVGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRVSYLT-SAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPSNVKSAICDIPPRGLKMAATFIGNTTAFRELFTRVDSQFQKMYARRAFI Trichonympha_agilis IGAKFWEVVSDEHGIDPTGSYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGFYTEGQELAESILDVVRKEAESCDSLQGFQLVHSLGGGTGAGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCSLRFPGQLNAD?RKLAVNLVPFPRLHFFICGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPNNVKSSITDIPPRGLKMAATFIGNSTSFRELFTRVDSQFQKMYARRAFI Tritrichomonas_foetus IGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGGKYVPRAILVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELAESILDVIRKEAESCDALQGFQLVHSLGGGTGSGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCSLRFPGQLNADLRKLAVNLVPFPRLHFFIVGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPNNVKSSICDIPPRGLKMAATFIGNTTAFRELFTRVDSQFQKMYARRAFI ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1131] TITLE Fig2A; LINK TAXA = Taxa4; DIMENSIONS NCHAR=331; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Devescovina_sp._D31 VYVKYLNQVLFAGRSSAPSGASTGSNEARELRDSASPRYGGKGTQQAVANVNTLLSPALKGLKLCCLKALDDKIREVDGTALKEKVGGNATTATSFALVESAAALQHIQLFQYLAKQYYG-CQNVPPKFKLPSPYFNILNGGKHAGGNLRFQEFMVSPYRAVPFPDQLRIVAEVYQKLSGLLVKKYGVSAKNLGDEGGFAPPINTPAEALTVTEEAIVAAGYRPGVEVFIGLDAAASEFYDGAKKLYEVEVGVFKTGDEMVEYYRQLTTAHPSIVSIEDGLDEKDYEHWIKLNQAIGGKIQLVGDDLYTTNPATIREGLAGKWCNALLLKV Holomastigotoides_mirabile_H53 VYVLWLGQVTLVARSSAPSGASTGSNEARELRDGD-KWYGGKGTKKAASNVTTILSPVLKGQKLCCLKELDGIIIKTDGTELKEKVGGNATTATSFALAEAAAAVKGIQLFEYIAAQYYGGCDKVPAKFSLPTPCFNILNGGKHAGGNLKLQEFMVLPGEGVPFPEGLRIVAEVYQVLGKLLVAKYGLSAKNLGDEGGFAPNLNTPEEALSIIEEAIKGAGYTPAKDVFIALDAAASEFYDKAKKTYEVELGVHKTGDQLVQYWAELVAKHPAIKSIEDGLDEKDYEHWVKLNAAIGGKVQLVGDDLYTTNPRTIKKGLEGKWCNALLLKV Hypotrichomonas_acosta_1 VYADYLGEVIFAGRSSAPSGASTGSGEARELRDAASKRYGGKGTLAASGNVAKLLSPALKGMCFCDLRALDKKICDTDGTILKEVVGGNACTACSFALAEAAANLKGCQLFEYLAEAYWG-KEHVPKKFKLPVPFFNILNGGKHAGGNLKLQEFMVSPKRDVPFPDQLRMVAEVYQKLGSILVKEKGVSAKNLGDEGGFAPLIDTPEEAILLIERAMTEAGYTPAKDMFLAFDAAASEFYDSATKLYEVEVGMKKTGDEMITYWEELIARHPCVYSIEDGLDELDYDNWAKLQARIGSKVQLVGDDLYTTNPRTIKKGLEGKWCNALLLKV Hypotrichomonas_acosta_2 VYAKRFGDVVFAGRSSAPSGASTGSNEARELRDKDSPRYGGKGTQTAAQNVTTTLSAALRGMPFTDLQNLDNAICAADGTELKENIGGNACTAASFALAEAAASLNNEQLFLYLARQY---QGEVPAKFKLPTPFFNILNGGKHAGGNLKIQEFMISPREDIPFPEQLRMAAEVYQQLGSLLAKEINVSARNPGDEGGFAPALNTPEEALGYIERAIQAAGLKVGEDIRLGLDAAASEFYNSETKTYEIETGMNKTGDEMVEYWKDLVTRHPAIVSIEDGLDEKDYETWIKLNEAIGDHVQLVGDDLYTTNPKTIRQGLDGKWCNALLLKV Monocercomonas_sp._1 VYANYCGEVVFAGRSSAPSGASTGSNEARELRDNDPKRYNGKGTLQAAQNVTELITPAVKNLVLNNIHDLDRAIRRVDKPELKEKIGGNATTATSFAFATAGANMNGEELFQYLARQIYP-EESIPTKFKLPTPFFNILNGGKHAGGNLKLQEFMVSPAENIPFPDQLRMVAEVYQKLGGILSKQFGVSAKNLGDEGGFAPLINSPDEALTVIEQAITEAGYKPGEEIRIGLDAAASEFYDKETKLYEVEVGMKKNGDELIQYWADMIEHHPSIVSVEDALDEKDYAHWIKLNKELGSKVQLVGDDLYTTNPNTIKKGLEGNWCNALLLKV Monocercomonas_sp._2 VYATQYGQVNLAGRSSAPSGASTGSNEARELRDTDRPRYGGKGTLQASENVSTILSPALHGMSFADLNALDEAIRNADGTELKEKVGGNACTAASFALAEAAAALNGEELFLYLARQFYK-NGEVPTKFKLPTPFFNILNGGKHAGGNLKIQEFMISPNTEIPFPDQLRMAAEIYHKLGAILAQEKGVSAKNLGDEGGYAPLLNTPEEAIEFIERAIKDAGYTPGTDIRLGLDAAASEFYNQETKTYEVEVGVQKTGEEMIQYWQDLVTRHPSIYSIEDGLDEKDYENWIKLNAAIGDKVQLVGDDLYTTNPKTIRAGLEGKWCNALLLKV Pseudotrichonympha_grassii_06B34 VYVKYLGNEIFAGRSSAPSGASTGSNEARELRDKDPGRYGGKGTLTAADNVTTKLSPVLQGKCLCCIKELDELILQTDGTELKENIGGNATTATSFALAESAAALKGVQLFEHIATNYWG-KGNEPKQYKLPSPCFNILNGGKHAGGKLQIQEFMLTPSRKFKYPDQLRVVAEVYQKLGALLVKEIDISAKNLGDEGGFAPNLDSPDQALDLIQRAVQEAGYVPADDVFYCLDCASSEFYKEG-K-YEVEHEKFLSGDELIEYYNALVTKYPAIISVEDPFDEKDYETWAKWTAQVGDKVQIVGDDLYTTNPKTIALGLEGKWANALLLKV Pseudotrichonympha_grassii_07A70 VYVSYLGNELFAGRSSAPSGASTGSNEARELRDKDPKRYGGKGTLTAANNVTTKISPVLKGQPLWYIEKLDKLILELDGTELKENIGGNATTATSFALAESAATLQGIQLFEHIATNYWG-KGNEPKKYKLPSPCFNILNGGKHAGGKLQIQEFMLTPARKFSYPDQLRVVAEVYQKLGALLVKEINISAKNLGDEGGFAPNLDSPDQALDLIQRAVQEAGYVPAEDVFYCLDCASSEFYKEG-K-YEVEHEKFLSGDELIQYYNDLVAKYPAIISVEDPFDEKDYETWAKWTAQIGDKVQIVGDDLYTTNPKTIALGLEGKWANALLLKV Spirotrichonympha_leidyi_09B45 VYAKYLGRVVLAARSSAPSGASTGSNEARELRDGD-KRYGGKGTQKAAHNVDTILSPALAGKGFCSLKELDEKIIEVDGTELKEKVGGNASTATSFALAESAAALGEKQLFEYLACQYYGGCDAKPKKFKLPTPFFNILNGGKHAGGKLKVQEFMVCPGVGIAFPDGLRIVAEVYQKLGGILTAKCGVSARNVGDEGGFAPNLDTPEQALSFIEEAIKAAGYTPGKECCIGMDAAASEFYHKDTKKYEIEEGVFKTGDEMITYWEELLKKHPAICSIEDGLDEKDYEHWVKLEARIGSKCQIVGDDLLTTNWRTIEKAIAGKWCNALLLKV Stephanonympha_sp._St07 VYVKFLNQVIFAGRSSAPSGASTGSGEARELRDTSSPRYLGKGTATAAANVTARLSPALVGQKLCCIKALDAKIQEVDGTPLKENIGGNATTATSFALAEAGAALQHIQLFQYFAKNYFG-CQNVPAKFKLPSPFFNILNGGKHAGGNLKFQEFMVTPTRSLRYPDQLRIIAEVYQKLGGLLVKKYGVSAKNLGDEGGFAPPLNTPEEALVVIEEAIAAAGYAPGAQIGIALDAAASEFYIEDRQVYEVEVGVFKTGDEMVDYYEALITKHPAIVSIEDGLDEKDYPHWIKLNERIGGRVQLVGDDLYTTNPATIRQGLAGKWCNALLLKV Stephanonympha_sp._St13 VYVKYLNQVIFAGRSSAPSGASTGSGEARELRDVSSPRYLGKGTATAAANVTTRLSPALTGLKLCCIKALDAKIQEVDGTPLKENIGGNATTATSFALAEAGAALQHIQLFQYFAKNYFG-CGNVPAKFKLPSPFFNILNGGKHAGGNLKFQEFMVTPTRSLPYPDQLRFIAEVYQKLGGLLVKKYGVSAKNLGDEGGFAPPLNTPEEALVVIEEAIAAAGYTPGAQIGIALDAAASEFYIEDRQVYEVEVGVFKTGDEMVDYYEALITKHPAIVSIEDGLDEKDYPHWIKLNERIGGRIQLVGDDLYTTNPATIRQGLAGKWCNALLLKV Tetratrichomonas_gallinarum VYANYMGGVRFAGRSSAPSGASTGSGEALELRDKDPKRFFGKGTLTACGNVTNKLSPALKGLPLEDLKAIDRKICETDGTDLKENIGGNACTATSFACAEAAAALNNEQLFLYLARQYYG-AENVPKKFKLPSPFFNILNGGKHAGGKLKLQEFMVNPRKDVPFPDQLRMVAEVYHTPGGLLQKKYGVSAKNLGDEGGFAPLLDTPEEALSVIEEAVKAAGYEPGKDIFFGLDAAASEFYNDEKKQYEVELGVWKTGDEMIQYWEELINKHPAIVSIEDGLDEKDYDHWVKLNQAIGGRCQLVGDDLYTTNPKTIRKGIEGNWCNALLLKV Trichomitus_batrachorum_1 VYADYLGQVIFAGRSSAPSGASTGVGEAYELRDGDAKRFGGKGTLTASGNVAKLLSPALKGMCFCDLKALDKKICDTDGTPLKKNVGGNACTATSFALAESAANLCGCQLFEYLAKQYHG-AEKVPKKFKLPTPFFNILNGGKHAGGNLKLQEFMASPKPGIPFPDQLRMVAEVYQKLGALLVKTKGVSAKNLGDEGGFAPLIDNPEEAITLIEQAMREAGYEPGVDMFLGLDAAASEFYDKDKKLYEVEVGKFLTAEQMIDYWDQMCTRHKCLVSIEDGLDELDYENWTKMNEKIGKKVQLVGDDLYTTNPSTIRKGLAGKWCNALLLKV Trichomitus_batrachorum_2 VYAKQFGEVVFAGRSSAPSGASTGSGEAQELRDKDLPRYGGKGTQKAASNVAEFISPAIRGMTFADLSALDGAICQADGTTLKTKIGGNACTAASFALAESAASLLHLQLFQYLAQQFH--QAALPPKFRLPTPFFNILNGGKHAGGKLKVQEFMISPREDAPFPEQLRMADEVYMHLGAILAKEKGVSAKNLGDEGGFAPLLDTPEEALSYIEKAIVEAGLKVGEDIRLGLDAAASEFYDKTTKTYEIEEGVVKTGEEMIQYWAALVEKHPAVVSIEDGLDEQDYENWVKLNEALGSKIQLVGDDLYTTNPATIRKGLEGKWCNALLLKV Trichomonas_vaginalis_1 VYVKYLGRITLAGRSSAPSGASTGVGEALELRDGDKARYGGKGTQKAAKNVTEVLSPALKGMCFCDFPALDKKICDTDGTVLKKNIGGNACTATSFALAEAGAAVQEIELFQYLAKAFYGGCDKVPKKFKLPSPFFNILNGGKHAGGNLKFQEFMVTPTRKVPFPDQLRMVAEVYQKLGGLLVKKYGLSAKNLGDEGGFAPNLNDPEEALTVIEEAIKAAGYEAGKDIMIGMDVASSEFYDENKKLYEVEVGKFLTADQMIDYFDELLKKHPAIVSIEDALAELDYENWTKLNARLGQRVQLVGDDLYTTNPITIKKGLEGKWCNALLLKV Trichomonas_vaginalis_2 VYVKYLGRITLAGRSSAPSGASTGVGEALELRDGDKARYGGKGTQKAAKNVTEVLSPALKGMCFCDFPALDKKICDTDGTVLKKNVGGNACTATSFALAEAGAAIQEIELFQYLAKAFYGGCDKVPKKFKLPSPFFNILNGGKHAGGNLKFQEFMVTPTRKVPFPDQLRMIAEVYQKLGGILVKKYGLSAKNLGDEGGFAPNLDSPEEALVVIEEAIKAAGYEAGKDVFIAMDVASSEFYDEEKKLYEVEVGKFLNADQMIEYYEDLLKRHPAIVSIEDALGELDYENWTKLNAKIGDKVQLVGDDLYTTNPITIKKGLEGKWCNALLLKV Trichomonas_vaginalis_4 VYVKYLGRITLAARSSAPSGASTGVGEALELRDGDKARYGGKGTLKAAANVTEKLSPALKGMCFCDLPALDKKICDTDGTVLKKNIGGNACTATSFALAEAGAAIQEIQLFEYLAKAFYGGADKVPKKFKLPSPFFNILNGGKHAGGNLKFQEFMVTPTRKVPFPDQLRMVAEVYQKLGGLLVKKYGLSAKNLGDEGGFAPNLNDPEEALSVIEEAIKAAGYEAGKDIMIGMDVASSEFYDEEKKLYEVEVGKFLNADQMIDYFDDLLKRHPAIVSIEDALAELDYENWTKLNARLGQRVQLVGDDLYTTNPITIKKGLEGKWCDALLLKV Trichonympha_agilis VYAKHLGEVVLVARSSAPSGASTGSGEAMELRDKDNSKYGGKGTEKASANVAEKISPAVKGEKFCDLTNLDDKICKADGTELKTNIGGNACTAASFALAEAAAKLKGVELFQYLAENYYG-AGKAPKKFSLPAPCFNILNGGKHAGGNLQIQEFMLTPNTKRSYPDQLRVIAEVYQHLGALLVKEHGVSAKNLGDEGGFAPNLDTPAQALDIIERAVKAAGYVPVDDVKYCLDCASSEFYNEETKKYEIEKGSWKTGDELIEYYQDLINKYPAITSIEDPFDEHDYETWTKFTAAVGSKVQIVGDDLYTTNPKTIAKGIAGKWANALLLKV Tritrichomonas_foetus VYVHYLGEEQFAGRSSAPSGASTGSNEARELRDTDSKRYGGKGTATAASNVTNVLGPALKGMKLDDLKALDAKICSTDGTELREKVGGNACTATSFALAEAGAALEGVELFQYLARQYWG-AEKVPAKFHIPCPCFNILNGGKHAGGNLKLQEFMAMPSTKYEFPDQLRIVAEVYQKLSSLLQKKYGVSAKNLGDEGGFAPCLDTPDEALDCIEQAVKDAGYEPGVDVNICLDAAASEFYDPEAKLYEVEVGVKKTGDEMIKYWEDLIARHPCIKSIEDGLDEKDYEHWVKLNAAIGSKCQLVGDDLYTTNPNTIRKGLEGKWCNALLLKV ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1130] TITLE Fig2B; LINK TAXA = Taxa5; DIMENSIONS NCHAR=378; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Devescovina_sp._D01 HGIQPDGQMPSDKTIGVCDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQIINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGMQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLSVVEITNTLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVGGAVATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV Devescovina_sp._D10 HGIQPDGQMPSDKTIGVCDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQITNGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGMQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATRAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVGGAVATIKTRRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYTKRAFV Holomastigotoides_mirabile_03B79 HGIQPDGQMPSDKTIGVADDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLINGKEDAANNYARGHYTVGKEIIDLTLDRVRKLADQCTGMQGFLLFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAIVEPYNSILATHAMIDHSDCAFMVDNEALYDICRRALDIERPTYTNLNRLIGQCVSSLTASLRFDGALNVDFTEFQTNWVPYARIHFPICSYAPVISAEKAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVGSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV Hypotrichomonas_acosta HGIQPDGQMPSDKTIGVCDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGLQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYSRIHFPICSYAPVISAEKAYHEQLSVAEITNSLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVSAAVATIKTKRTIQFVDWCPTSFKMGINYQPPTVVPGGDLAMVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV Monocercomonas_sp._1 HGIQPDGQMPSDKTIGVCDDAFNTFFSETGAGKHIPRAVFVDLEPTVVDEVRTGTYRQLFHPEQIINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGLQGFLIFHSFGGGTGAGLGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYSRIHFPICSYAPVISAEKAYHEQLSVAEITNSLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVGAAVATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV Monocercomonas_sp._2 HGIQPDGQMPSDKTIGVCDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQIINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGLQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYSRIHFPICSYAPVISAEKAYHEQLSVAEITNSLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVGAAVATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV Pseudotrichonympha_grassii_03A54 HGIQPDGQMPSDKTIGVEDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQIINGKEDAANNYARGHYTVGKEIIDLTLDRVRKLADQCTGLQGFLLFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSVAVVEPYNSVLATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYSRIHFPICSYAPVISAEKAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACCCLYRGDVVPKDVGSAIATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV Spirotrichonympha_leidyi_02A66 HGIQPDGQMPSDKTIGVSDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGMQGFLMFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAIVEPYNSILATHAMIDHSDCAFMVDNEALYDICRRALDIERPTYTNLNRLIGQCVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVGSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV Stephanonympha_sp._St10 HGIQPDGQMPSDKTIGVCDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQIINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGMQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDFGRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVGAAVATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV Stephanonympha_sp._St48 HGIQPDGQMPSDKTIGVCDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQIINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGMQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEEAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVGAAVATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV Tetratrichomonas_gallinarum HGIQPDGQLPSDKTIGVEDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDLTLDRIRKLADQCTGLQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPSPQVSTAIVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLSVAEITNSLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVSAAVATIKTKRTIQFVDWCPTGFKMGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV Trichomitus_batrachorum HGIQPDGQMPSDKTIGICDDAFNTFFSETGAGKHVPRAVMVDLEPTVVDEVRTGTYRQLWHPEQLINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGLQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLTVAEVTNTLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVSAAIATIKTKRAIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAVAEAWSRLDHKFDLMYAKRAFV Trichomonas_vaginalis_1 HGIQPDGQLPSDKTIGVEDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGLQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPSPQVSTAIVEPYNSILATHSMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLSVAEITNSLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVSAAVATIKTKRTIQFVDWCPTGFKMGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV Trichomonas_vaginalis_2 HGIQPDGQLPSDKTIGVEDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGLQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPSPQVSTAIIEPYNSILATHSMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLSVAEITNSLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVSAAVATIKTKRTIQFVDWCPTGFKMGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV Trichonympha_agilis_1 HGIQPDGQMPSDKTIGVEDDAFNTFFQETGAGKHVPRAVFVDLEPTVVDEVRTGTYRRLFHPEQIINGKEDAANNYARGHYTVGKEIIDLTLDRVRKLADQCTGLQGFLMFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPA?QISTAVVEPYNSILACHSMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTELQTNLVPYSRIHFPICSYAPVISAEKAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACCLLYRGDVVPKDVGSAVATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMFSKRAFV Trichonympha_agilis_2 HGIQPDGQMPSDKTIGVEDDAFNTFFQETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQIINGKEDAANNYARGHYTVGKEIIDLTLDRVRKLADQCTGLQGFLMFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQISTAVVEPYNSILACHSMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYSRIHFPICSYAPVISAEKAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACCLLYRGDVVPKDVGSAVATIKTKRTIQFVDWCLTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMFAKRAFV Tritrichomonas_foetus_1 HGIQPDGQMPSDKTIGVCDDAFNTFFSETGSGKHVPRAVFIDLEPTCMDEVRTGTYRQLYHPEQLINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLSDQCTGMQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYSPVISAEKAYHEQLSVAEITNSLFEPANMMVKCDPRHGKYMACTCLYRGDVVPKDVGAAVATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIVEAWSRLDHKFDLMYAKRAFV Tritrichomonas_foetus_2 HGIQPDGQMPSDKTIGVCDDAFNTFFSETGAGKHVPRAVFIDLEPTCMDEVRTGTYRQLYHPEQLINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGMQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACTCLYRGDVVPKDVGAAVATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1128] TITLE Fig3; LINK TAXA = Taxa3; DIMENSIONS NCHAR=1275; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Arabidopsis_thaliana GRLVARVELVAVNDPFITTEYMTYMFKYDSVHGQWKVTVFGIR--NPEDIPWADYVVESTGVFTAHLKGGAKKVVISEPSPMFVVGVNEIVSNASCTTNCLAPLAKVINDR-FGIVEGLMTTVHSITATQKTVDDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK-LTGMSFRVPTVDVSVVDLTVRLEKAATYEEIKKAIKEESEYTEDDVVSTDFVGDNRSSIFDAKAGIALVKLVSVTAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVGNVNNIIGPALDPTQQTAIDNFMVHELDGTQNEWGWCKQKLGANAILAVSLAVCKAGAVVSGIPLYKHIAVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAASFKEAMKMGVEVYHHLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIEKAGYT-GK-VVIGMDVAASEFYSEDSGDALKDLYKSFVAEYP-IVSIEDPFDQDDWEHYAKMTTECVQIVGDDLLVTNPKRVAKAIAEKSCNALLLKVHGIQPDGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLNIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQILNVQNKNSSYFVEWIPNNVKSSVCDIPPTGIKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFL Chlamydomonas_reinhardtii GRNFLRCDVVAIND-SGGVKQASHLLKYDSTLGTFAIKIVSSR--DPLQLPWIDLVIEGTGVFIKHIQAGASKVLITAPAPTFVVGVNEIISNASCTTNCLAPFVKVLEQK-FGIVKGTMTTTHSYTGDQRLLDDLRRARAAALNIVPTTTGAAKAVSLVLPSLKGK-LNGIALRVPTPTVSVVDLVVQVEKKTFAEEVNAAFREAANVEDAPLVSIDFKCTDQSTSIDASLTMVMVKVVA-RAAVPSGASTGVHEAVELRDGDKSKYLGKGVTKAVENINAIIAPALDPVKQAEIDQKM-KDLDGTDN-----KGKLGANAILAVSMAVCKAGAAEKGVPLYKHIAILPVPSFNIINGGSHAGNALAMQEFMILPVGASSFSEAMRMGCEVYHALKGLIKAKYGQDACNVGDEGGFAPNIGSNDEGLNLVNEAIEKAGYT-GK-VKIGMDVASSEFYTEDTKEQMLELYNEFCKKYP-VISIEDPFEQDDWEPCAKLTTENCQVVGDDILVTNPVRVKKAIDAKAVNALLLKVHGIQPDGDDAFNTFFSETGAGKHVPRCIFLDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLALDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRSLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNAAFEPASMMVKCDPRHGKYMACCLMYRGDVVPKDVNASVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIGEIFSRLDHKFDLMYAKRAFVVVSDEHGIDPTGTYHGDS-DLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVVPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPTFGDLNHLISAVMSGITCCLRFPGQLNADLRKLAVNLIPFPRLHFFMVGFTPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFL Devescovina_sp. GRLVFRAQVVAIHD-LCEIKTNVHLLKFDTAHKIWPVKNIGGRL-SPSQLPWVDIVLESTGIFKGHIIAGAKRVVLSVPSCTLVLGVNNNISNASCTTNCLAPVVKVLNEA-FGVFNGFMTTVHSYTNDQVVSDDLRRARAAGQNIIPTSTGAAIALPRVVKGLTPKSLDGISLRVPTLTGSLVDVTLNLKKTVTVQEVNDALIAATNFSTDPLVSSDIVDNPASSIVDGLSTKVIVKVLSVRSSAPSGASTGSNEARELRDSASPRYGGKGTQQAVANVNTLLSPALKLCCLKALDDKI-REVDGTAL-----KEKVGGNATTATSFALVESAAALQHIQLFQYLAKLPSPYFNILNGGKHAGGNLRFQEFMVSPYRAVPFPDQLRIVAEVYQKLSGLLVKKYGVSAKNLGDEGGFAPPINTPAEALTVTEEAIVAAGYRPGVEVFIGLDAAASEFYDGATGDEMVEYYRQLTTAHPSIVSIEDGLDEKDYEHWIKLNQAIIQLVGDDLYTTNPATIREGLAGKWCNALLLKVHGIQPDGDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQIINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGMQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLSVVEITNTLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVGGAVATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFVVISDEHGIDPTGSYHGDS-DLQLERINVYYNEATGGKYVPRAILVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELAESILDVIRKEAESCDALQGFQLVHSLGGGTGSGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCALRFPGQLNADLRKLAVNLVPFPRLHFFICGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPNNVKSSICDIPPRGLKMASTFIGNTTAFRELFTRVDNQFSKMYARRAFI Guillardia_theta GRLVARIKLLQVNAGSATPDYMAYQFKYDSIHGRYQVITTRAR--DPKDIGWVEYLCESTGVFLPHIDAGVKKVIFSAPALTVVMGVNAFISCASCTTNGLAPLVKCINDK-WGIEEGLMTTIHAMTATQAVVDDWRGGRAASGNIIPSSTGAAKAVAKVIPAVKGK-LTGMAFRVPTIDVSVVDLTCRLAKDATYEEICAEVKRRANYTDEPLVSTDFETEPISSTFDAEAGISLVKLVA----------------CELRDGDKSRYLGKGVSKAVKNVEEKIAPAIDPTDQEGIDKKM-IEVDGTPN-----KTNLGANAILAVSLAVAKAGAAQKGVPLYQHFAVLPVPWMNVINGGSHAGNRLAMQEFMIGATGATSFKEAVRMSCEVYHALKAVIKKKYGMDACNVGDEGGFAPNIQDNKEGLSLLTEAIANAGYT-GK-IKIGMDVAASEFYQDGSGDELIEVYKSFTQDFP-VVTIEDPFDQDDWEHYNKFNSQMTQIVGDDLLVTNPNRITMAIEKKACSGLLLKVHGIQPDGDDAFNTFFSETGAGKYVPRCVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLVLDRIRKLADNCTGLQGFMIFHAIGGGTGSGLAALLCERLSVDYGKKSKLGFTIIPSPQISTAVVEPYNSILSCHTLLEHMDVNASLDNEAIYDICRRNLDIERPTYTNLNRLVAQCISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLTSYAPIISAEKAYHEQLSVAEITNAVFEPASMMTKCDPRHGKYMAACLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMVSNSTAVAEVFSRLDHKFDLMYAKRAFVVISDEHGVDPTGTYHGDS-DLQLERINVYFNEATGGRYVPRAVLMDLEPGTMDSVRAGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQISHSLGGGTGAGMGTLLISKIREEYPDRIMLTFSIVPSPKVSDTVVEPYNATLSVHQLVENADECFCIDNEALYDICFRTLKLTTPTFGDLNHLVSAVMSGVTCSLRFPGQLNSDLRKLAVNIVPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMCAADPRHGRYLTAAAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKASVCDIPPKGLKMAVNFIGNSTAIQEMFKRVSEQFTGMFRRKAFL Holomastigotoides_mirabile GRLVFRAQIVAIHD-LLDIKTNVHLLKYDSAHGQLGVKNIVGRI-DPWQLPWVDVVLESTGVYKGHIKAGARKVVLSVPACTLVLGVNNHISNASCTTNCLAPVTKIIHQK-WKVVNGFMTTVHAYTNDQQVADDLRRARAAGQNIIPTSTGAAKALPIVVKGLRPKSLDGISIRVPVITGSLVDTSFNVEGQPTAAEVNQALKEASEYVTDPIVSSDIINSTFSSIVDSLETKVIVKVLSVRSSAPSGASTGSNEARELRDGD-KWYGGKGTKKAASNVTTILSPVLKLCCLKELDGII-IKTDGTEL-----KEKVGGNATTATSFALAEAAAAVKGIQLFEYIASLPTPCFNILNGGKHAGGNLKLQEFMVLPGEGVPFPEGLRIVAEVYQVLGKLLVAKYGLSAKNLGDEGGFAPNLNTPEEALSIIEEAIKGAGYTPAKDVFIALDAAASEFYDKATGDQLVQYWAELVAKHPAIKSIEDGLDEKDYEHWVKLNAAIVQLVGDDLYTTNPRTIKKGLEGKWCNALLLKVHGIQPDGDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLINGKEDAANNYARGHYTVGKEIIDLTLDRVRKLADQCTGMQGFLLFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAIVEPYNSILATHAMIDHSDCAFMVDNEALYDICRRALDIERPTYTNLNRLIGQCVSSLTASLRFDGALNVDFTEFQTNWVPYARIHFPICSYAPVISAEKAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVGSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFVVISDEHGIDPTGSYHGDS-DLQLERINVYYNEATGGKYVPRAILVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELCESILDVIRKEAESCDALQGFQLCHSLGGGTGSGLGTLLLNKLREEYPDRILSTYSVVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVTMVMSGTTCSLRFPGQLNADLRKLAVNLVPFPRLHFFICEFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPSNVKSSICDIPPRGLKMAATFIGNTTAFRELFTRVDAQFQKMYARRAFI Homo_sapiens GRLVTRADIVAINDPFIDLNYMVYMFQYDSTHGKFHITIFQER--DPSKIKWAEYVVESTGVFTAHLQGGAKRVIISAPSPMFVMGVNHIISNASCTTNCLAPLAKVIHDN-FGIVEGLMTTVHAITATQKTVDLWRDGRGALQNIIPASTGAAKAVGKVIPELNGK-LTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEYTEHQVVSSDFNSDTHSSTFDAGAGIALVKLISLRAAVPSGASTGIYEALELRDNDKTRYMGKGVSKAVEHINKTIAPALNVTEQEKIDKLM-IEMDGTEN-----KSKFGANAILGVSLAVCKAGAVEKGVPLYRHIAILPVPAFNVINGGSHAGNKLAMQEFMILPVGAANFREAMRIGAEVYHNLKNVIKEKYGKDATNVGDEGGFAPNILENKEGLELLKTAIGKAGYT-DK-VVIGMDVAASEFFRSGSPDQLADLYKSFIKDYP-VVSIEDPFDQDDWGAWQKFTASAIQVVGDDLTVTNPKRIAKAVNEKSCNCLLLKVHGIQPDGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTRLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPGHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVVISDEHGIDPSGNYVGDS-DLQLERISVYYNEASSHKYVPRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFL Hypotrichomonas_acosta GRLVFRAQVVAVHD-LSNVAVNAHLLKYDTAHGIFPINSMEGSD-GPSKLPWVDVVLESTGVFRGHIKAGAKKVILSAPASTLVLGVNDCISNASCTTNALGPVAQTIMEH-FKITNGFMTTVHAYTNDQVVHDDPRRARSACQNIVPTSTGIAKALPKVVRSLPSQSFNGISFRVPVVTGSLIDLTVLVEKKCTRDEVNAALKTATLYSEEPLVSSDIIHNQFSCVVDGLSTQVMIKILAVRSSAPSGASTGSGEARELRDAASKRYGGKGTLAASGNVAKLLSPALCFCDLRALDKKI-CDTDGTIL-----KEVVGGNACTACSFALAEAAANLKGCQLFEYLAKLPVPFFNILNGGKHAGGNLKLQEFMVSPKRDVPFPDQLRMVAEVYQKLGSILVKEKGVSAKNLGDEGGFAPLIDTPEEAILLIERAMTEAGYTPAKDMFLAFDAAASEFYDSATGDEMITYWEELIARHPCVYSIEDGLDELDYDNWAKLQARIVQLVGDDLYTTNPRTIKKGLEGKWCNALLLKVHGIQPDGDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGLQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYSRIHFPICSYAPVISAEKAYHEQLSVAEITNSLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVSAAVATIKTKRTIQFVDWCPTSFKMGINYQPPTVVPGGDLAMVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFVVVSDEHGIDPTGSYHGDS-DLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELCESILDVVRKEAESCDALQGFQLVHSLGGGTGAGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCSLRFPGRLNSDLRKLAVNLVPFPRLHFSIVGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPSNVKSSITDIPPRGLKMAATFIGNTTAFRELFTRVDSQFQKMYARRAFI Monocercomonas_sp. GRLVFRAQIVAIHD-LCDIKTNVHLLKYDTAHRSFGVKCIGGRL-GPSELPWVDVVLESTGIFRGHIVSGAKRVVLSVPSCTLVLGVNDCVSNASCTTNCLAPVTKVINDQ-FKVLNGFMTTVHSYTNDQVVSDDLRRARAAAMNIIPTSTGAAIALPRVVKALPPKSMDGLSLRVPTITGSLVDVTFNVEKAVTKEEVNNALKAACEFTMDPIVSSDIIDDNHSSIVDGLSTMVLVKVLSVRSSAPSGASTGSNEARELRDTDSKRYGGKGTATAASNVTNVLGPALKLDDLKALDAKI-CSTDGTEL-----REKVGGNACTATSFALAEAGAALEGVELFQYLAHIPCPCFNILNGGKHAGGNLKLQEFMAMPSTKYEFPDQLRIVAEVYQKLSSLLQKKYGVSAKNLGDEGGFAPCLDTPDEALDCIEQAVKDAGYEPGVDVNICLDAAASEFYDPETGDEMIKYWEDLIARHPCIKSIEDGLDEKDYEHWVKLNAAICQLVGDDLYTTNPNTIRKGLEGKWCNALLLKVHGIQPDGDDAFNTFFSETGAGKHIPRAVFVDLEPTVVDEVRTGTYRQLFHPEQIINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGLQGFLIFHSFGGGTGAGLGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYSRIHFPICSYAPVISAEKAYHEQLSVAEITNSLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVGAAVATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFVVISDEHGIDPTGSYHGDS-DLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELAESILDVIRKEAESCDALQGFQLVHSLGGGTGSGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCSLRFPGQLNADLRKLAVNLVPFPRLHFFIVGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPNNVKSSICDIPPRGLKMAATFIGNTTAFRELFTRVDSQFQKMYARRAFI Pseudotrichonympha_grassii GRLVFRAKVVAIHD-LCPIKTNIHLLKYDSAHGVFKVQNLDEKV-GPAGLPWVDFVLESTGFFKGHIIAGAKKVILSVPACTLVCGVNDTISNASCTTNCLGPVAKVINDA-FKIKNGFMTTVHSYTNDQKVADDLRRARAAAINIIPTSTGAAIALPIVVKGLPPKSLDGIALRVPTITGSLVDLTVNVEATVTKDDVNKAVEAASKYVTDPIVSTDIIHDPHSSVFDSQLTKVIVKVLSVRSSAPSGASTGSNEARELRDKDPGRYGGKGTLTAADNVTTKLSPVLCLCCIKELDELI-LQTDGTEL-----KENIGGNATTATSFALAESAAALKGVQLFEHIAKLPSPCFNILNGGKHAGGKLQIQEFMLTPSRKFKYPDQLRVVAEVYQKLGALLVKEIDISAKNLGDEGGFAPNLDSPDQALDLIQRAVQEAGYVPADDVFYCLDCASSEFYKEGSGDELIEYYNALVTKYPAIISVEDPFDEKDYETWAKWTAQVVQIVGDDLYTTNPKTIALGLEGKWANALLLKVHGIQPDGDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQIINGKEDAANNYARGHYTVGKEIIDLTLDRVRKLADQCTGLQGFLLFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSVAVVEPYNSVLATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYSRIHFPICSYAPVISAEKAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACCCLYRGDVVPKDVGSAIATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFVVVSDEHGIDPTGSYHGDS-DLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRAGQFGQLFRPDNFVFGQSGAGNNWAKGFYTEGQELCESILDVVRKEAESCDALQGFQLVHSLGGGTGAGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCSLRFPGQLNADLRKLAVNLVPFPRLHFFICGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPNNVKCSITDIPPRGLKMAATFIGNSTSFRELFTRVDSQFTKMYARRAFI Saccharomyces_cerevisiae GRLVLRLEVVAVNDPFISNDYAAYMVKYDSTHGRYKIATYQER--DPANLPWIDVAVDSTGVFKKHIDAGAKKVVITAPSPMFVVGVNHIVSNASCTTNCLAPLAKVINDA-FGIEEGLMTTVHSMTATQKTVDDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGK-LTGMAFRVPTVDVSVVDLTVKLEKEATYDQIKKAVKAAAEYTEDAVVSSDFLGDTHASIFDASAGIQLVKLISLRSIVPSGASTGVHEALEMRDGDKSKWMGKGVLHAVKNVNDVIAPAFDVKDQKAVDDFL-ISLDGTAN-----KSKLGANAILGVSLAASRAAAAEKNVPLYKHLAVLPVPFLNVLNGGSHAGGALALQEFMIAPTGAKTFAEALRIGSEVYHNLKSLTKKRYGASAGNVGDEGGVAPNIQTAEEALDLIVDAIKAAGHD-GK-VKIGLDCASSEFFKDGTGPQLADLYHSLMKRYP-IVSIEDPFAEDDWEAWSHFFKTAIQIVADDLTVTNPKRIATAIEKKAADALLLKVHGIKPDGEEGFSTFFHETGYGKFVPRAIYVDLEPNVIDEVRNGPYKDLFHPEQLLSGKEDAANNYARGHYTVGREILGDVLDRIRKLADQCDGLQGFLFTHSLGGGTGSGLGSLLLEELSAEYGKKSKLEFAVYPAPQVSTSVVEPYNTVLTTHTTLEHADCTFMVDNEAIYDMCKRNLDIPRPSFANLNNLIAQVVSSVTASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVSYSPVLSKSKAFHESNSVSEITNACFEPGNQMVKCDPRDGKYMATCLLYRGDVVTGDVQRAVEQVKNKKTVQLVDWCPTGFKIGICYEPPTATPNSQLATVDRAVCMLSNTTSIAEAWKRIDRKFDLMYAKRAFVTICGEHGLDFNGTYHGHD-DIQKERLNVYFNEASSGKWVPRSINVDLEPWTIDAVRNSAIGNLFRPDNYIFGQSSAGNVWAKGHYTEGAELVDSVMDVIRREAEGCDSLQGFQITHSLGGGTGSGMGTLLFSKIKEELPDRMMATFSVLPSPKTSDTVVEPYNATLSVHQLVEHSDETFCIDNEALYDICQRTLKLNQPSYGDLNNLVSSVMSGVTTSLRYPGQLNSDLRKLAVNLVPFPRLHFFMVGYAPLTAIGSQSFRSLTVPELTQQMFDAKNMMAAADPRNGRYLTVAAFFRGKVSVKEVEDEMHKVQSKNSDYFVEWIPNNVQTAVCSVAPQGLDMAATFIANSTSIQELFKRVGDQFSAMFKRKAFL Spironucleus_barkhanus GRMAMRAEVVAINDPFIDGEYMVYMFKYDSVHRTVKVTCYAER--DPQQIAWCDIVLECTGVFTLHVHGSVKKCIISAPSPMFVMGVNTVVSNASCTTNCLAPICKVLEEC-YGIEAGLMTTVHAATATQPSVDDWRGGRSCMCNIIPAATGAAKAVGKVIPQLNGK-VTGMAFRVPTTDVSVVDLTVLLKKDTTYEDICANMKKYAEYTEEAVVSSDFLSSTTTSNFDAKAGIQMVKVVS----------------LELRDGG-ADYAGKGVEKALNNIRTIIAPALDVTNQVAIDKKL-EEIDGTENK---TFKKIGANAALPVSMACCVAAAAFKKMPLWKYISSLPVPCLNIINGGKHAGNMLAPQEYMVAPYKATSMHEAMKWGMEVYACLQKGLKKTFGIGSTAVGDEGGFAPQVNDPEEPLKLIMQAITDAKLE-GK-IGICMDVAASEFFCEKTGAEMVDLYMSFIQKYP-IVSIEDPFDQDDFESYALLLQKITQVVGDDLTVSQVSRVQMAIDKKACNALLLKVHGIHQDGEDSFNTFFSETGAGKHVPRCVYIDLEPTVVDEVRAGAYRQIYHPEQLISGKEDAANNYARGHYTVGKEVVDLVLDRLRKLADDCSGLQGFMLHHSFGGGTGSGLGSLILERLSVDYGRKTKLEFVIYPSLSIAVSVVEPYNTVLAAHCMLEHSDCAFMIDNEAMYDICHRNLDIERCTYTNINRIVAQMISGMTASLRFDGALNVDLTEFQTNLVPYPRVHFPFCSYAPLVSSEKAYHEKLTVAEITNSVFEPANMMVKCDPRHGKYMACCMMYRGDVVPKDVNAAIAVIKTKRTIQFVDWCPTGFKVGINYQPPTVIPGGDLAKVQRAVLMISNSTAIAEVWSRTDHNFDLMYAKRAFVVISDEHGIDPSGEYRGDS-ELQIERVNVYYNEATGGRYVPRAVLVDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDTVRKEAEACDCLQGFQLVHSLGGGTGSGMGTLLMAKIREEYPDRMMCPFSIVPSPKVSDTVVEPYNATLSVHQLVENADEVFCIDNEALYDICFRTLKLTCPTYGDLNHLVSLVMSGITCCLRFPGQLNADLRKIAVNLVPFPRLHFFVAGFAPLTSRGSQIYRALTVPELFSQMFDNKNMMAASDPRHGRYLTCLTLIRGRVSTKEVDEQDHNIQNKNSSYFVEWIPRNIMVGICDIPPRGLKMSGTFIGNTTAIQELFKRVGEQFTAMFRRKAFL Spirotrichonympha_leidyi GRLVFRAQVVAIHD-LFAIDVNIHLLKYDSAHGTWPVENMVGRI-HPKDLKWVDVVLESTGVYKGHIAAGAKKVVLSVPACTLVLGVNDMISNASCTTNCLAPITKIINSK-WKIITGFMTTVHAYTNDQQVADDMRRARAAAQNIIPTSTGAAKALPIVVHDLRPKSLDGISIRVPVITGSLVDTSFNVEGTPTRDEINAALKAATLYTEDAIVSSDIINCTLSSIVDSLETKVIVKVLSVRSSAPSGASTGSNEARELRDGD-KRYGGKGTQKAAHNVDTILSPALGFCSLKELDEKI-IEVDGTEL-----KEKVGGNASTATSFALAESAAALGEKQLFEYLAKLPTPFFNILNGGKHAGGKLKVQEFMVCPGVGIAFPDGLRIVAEVYQKLGGILTAKCGVSARNVGDEGGFAPNLDTPEQALSFIEEAIKAAGYTPGKECCIGMDAAASEFYHKDTGDEMITYWEELLKKHPAICSIEDGLDEKDYEHWVKLEARICQIVGDDLLTTNWRTIEKAIAGKWCNALLLKVHGIQPDGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGMQGFLMFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAIVEPYNSILATHAMIDHSDCAFMVDNEALYDICRRALDIERPTYTNLNRLIGQCVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVGSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFVVISDEHGIDPTGSYHGDS-DLQLERINVYFNEATGGKYVPRAILVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELCESILDVIRKEAESCDALQGFQLTHSLGGGTGSGLGTLLLNKLREEYPDRILSTYSVVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVTMVMSGTTCSLRFPGQLNADLRKLAVNLVPFPRLHFFICGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPSNVKSSICDIPPRGLKMAATFIGNTTAFRELFTRVDAQFQKMYARRAFI Stephanonympha_sp. GRLVFRAQVVAIHD-LCDLKTNIHLLKFDTAHKIWPVKSIGGRL-GPSQLPWVDVVLESTGIFRGHIVSGAKKVVLSVPSCTLVLGVNNCISNASCTTNCLAPLVKVLNEA-FGVINGFMTTTHSYTNDQVVSDDLRRARAAAQNIIPTSTGAAIALPRVVKGLTPKSLDGLSLRVPTLTGSLVDVSLNLKKVVTIQEVNDALIAATKFSTDPLVSSDIVDNPASSIVDGLSTKVIVKVLSVRSSAPSGASTGSGEARELRDTSSPRYLGKGTATAAANVTARLSPALKLCCIKALDAKI-QEVDGTPL-----KENIGGNATTATSFALAEAGAALQHIQLFQYFAKLPSPFFNILNGGKHAGGNLKFQEFMVTPTRSLRYPDQLRIIAEVYQKLGGLLVKKYGVSAKNLGDEGGFAPPLNTPEEALVVIEEAIAAAGYAPGAQIGIALDAAASEFYIEDTGDEMVDYYEALITKHPAIVSIEDGLDEKDYPHWIKLNERIVQLVGDDLYTTNPATIRQGLAGKWCNALLLKVHGIQPDGDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQIINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGMQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDFGRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVGAAVATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFVVISDEHGIDPTGSYHGDS-DLQLERINVYYNEATGGKYVPRAILVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQEPCESILDVIRKEAESCDALQGFQLVHSLGGGTGSGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCSLRFPGQLNADLRKLAVNLVPFPRLHFFICGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPNNVKSSICDIPPRGLKMAATFIGNTTAFRELFTRVDSQFSKMYARRAFI Tetratrichomonas_gallinarum GRLVFRAQVVAIHD-LCDLKTNAYLLRYDSAHRTFQVKSLGGRL-NPSQLPWIDVVLESTGIFRGHILAGAKKVVLSVPSCTLVLGVNDCISNASCTTNCLGPVAKTLNNA-FGIVSGFMTTVHSYTNDQVVADDLRRARAAGMNIIPTSTGAAIALPKVCHGLPKGSLDGFALRVPTITGSLVDLTVNVKAICTKEEVNAALKKATEYVTDPIVSTDIIGCQYSSIVDSLSTKVLVKVLSVRSSAPSGASTGSGEALELRDKDPKRFFGKGTLTACGNVTNKLSPALPLEDLKAIDRKI-CETDGTDL-----KENIGGNACTATSFACAEAAAALNNEQLFLYLAKLPSPFFNILNGGKHAGGKLKLQEFMVNPRKDVPFPDQLRMVAEVYHTPGGLLQKKYGVSAKNLGDEGGFAPLLDTPEEALSVIEEAVKAAGYEPGKDIFFGLDAAASEFYNDETGDEMIQYWEELINKHPAIVSIEDGLDEKDYDHWVKLNQAICQLVGDDLYTTNPKTIRKGIEGNWCNALLLKVHGIQPDGDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDLTLDRIRKLADQCTGLQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPSPQVSTAIVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLSVAEITNSLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVSAAVATIKTKRTIQFVDWCPTGFKMGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFVVISDEHGIDPTGSYHGDS-DLQLERINVYFNEATGGKYVPRAILVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELCESILDVIRKEAESCDALQGFQLVHSLGGGTGAGLGTLLLNKLREEYPDRILCTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICLRTLKLTTPTYGDLNHLVSMVMSGSTCSLRFPGQLNSDLRKLAVNLVPFPRLHFFIVGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTCSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPSNVKCAICDIPPRGLKMAATFIGNTTAFRELFTRVDSQFQKMYARKAFI Toxoplasma_gondii GRLVFRAEVLAINDPFMSLDYMVYLLRYDSVHGHYPVTVFNEK--EPTAIPWVHYICESTGIFLAHLTNGAKKVIMSAPPPMFVMGVNNIVSNASCTTNCLAPLAKIVHDK-FGIVEGLMTTVHAMTANQLTVDDWRAGRSAGVNIIPASTGAAKAVGKIIPSLNGK-LTGMAFRVPVPDVSVVDLTCKLAKPAKYEDIVAAVKEAATYTDEEVVSSDFVHCKFSSVFDINAGIMLVKLVSVRAAVPSGASTGIYEALELRDKDPKRYLGKGVLNAVEIVRQEIKPALDPCDQKGIDMLMVEQLDGTKNEWGYSKSKLGANAILGVSIACCRAGAASKGLPLYKYIAVMPVPFFNVINGGEHAGNGLALQEFLIAPVGAPNIREAIRYGSETYHHLKNVIKNKYGLDATNVGDEGGFAPNVATAEEALNLLVEAIKAAGYE-GK-IKIAFDAAASEFYKQDTGEKLKEVYEGWLKKYP-IISVEDPFDQDDFASFSAFTKDVTQVIGDDILVTNILRIEKALKDKACNCLLLKVHGIQPDGDDAFNTFFSETGAGKHVPRCVFLDLEPTVVDEVRTGTYRHLFHPEQLISGKEDAANNFARGHYTIGKEIVDLSLDRIRKLADNCTGLQGFLMFNAVGGGTGSGLGCLLLERLSVDYGKKSKLNFCSWPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRMDHKFDLMYAKRAFVVISDEHGIDPTGTYCGDS-DLQLERINVFYNEATGGRFVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKVREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVQVIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTCCLRFPGQLNSDLRKLAVNLVPFPRLHFFLIGFAPLTSRGSQQYRALSVPELTQQMFDAKNMMCASDPRHGRYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNMKSSVCDIPPKGLKMSVTFVGNSTAIQEMFKRVSDQFTAMFRRKAFL Trichomitus_batrachorum GRLVFRAQVVAIHD-LCDLRTNVHLLKYDSAHGRFQVKSVGGRI-GPSQLPWVDVVLESTGIFRGHLKAGAKKVVLSVPSCTLVLGVNNCISNASCTTNCLAPVAKTLMEH-FEIINGFMTTVHSYTNDQVVADDLRRARSAAVNMIPTSTGAAIALPKVVHALPPKSMDGLSIRVPTVTGSIVDVTVNVKKACTVAEVNAALKAATEYTEDPIVSTDIISDPYSSIVDSQCTKVIVKVLSVRSSAPSGASTGVGEAYELRDGDAKRFGGKGTLTASGNVAKLLSPALCFCDLKALDKKI-CDTDGTPL-----KKNVGGNACTATSFALAESAANLCGCQLFEYLAKLPTPFFNILNGGKHAGGNLKLQEFMASPKPGIPFPDQLRMVAEVYQKLGALLVKTKGVSAKNLGDEGGFAPLIDNPEEAITLIEQAMREAGYEPGVDMFLGLDAAASEFYDKDTAEQMIDYWDQMCTRHKCLVSIEDGLDELDYENWTKMNEKIVQLVGDDLYTTNPSTIRKGLAGKWCNALLLKVHGIQPDGDDAFNTFFSETGAGKHVPRAVMVDLEPTVVDEVRTGTYRQLWHPEQLINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGLQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLTVAEVTNTLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVSAAIATIKTKRAIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAVAEAWSRLDHKFDLMYAKRAFVVISDEHGIDPTGSYHGDS-DLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELCESILDVIRKEAESCDALQGFQLVHSLGGGTGSGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCALRFPGQLNSDLRKLAVNLVPFPRLHFFICGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPNNVKSSICDIPPRGLKMAATFIGNTTAFRELFTRVDGQLQKMYARRAFI Trichomonas_vaginalis GRLVFRAQVVAIHD-LGDIKTNVYLLKYDTAHRAFPVKSIGGRL-GPSQLPWIDVVLESTGIFRGHLVSGAKKVVLSVPSCTLVLGVNDCISNASCTTNCLGPVAKTLNNA-FGIRNGFMTTVHSYTNDQVVADDLRRARAAGMNIIPTSTGAAIALPKVCHGLPPKSLDGFALRVPTITGSLVDLTVNVNAKVTKEEVNAALKKATEYVTDPIVSSDIIGCQYSSIVDALSTKVLVKVLSVRSSAPSGASTGVGEALELRDGDKARYGGKGTQKAAKNVTEVLSPALCFCDFPALDKKI-CDTDGTVL-----KKNIGGNACTATSFALAEAGAAVQEIELFQYLAKLPSPFFNILNGGKHAGGNLKFQEFMVTPTRKVPFPDQLRMVAEVYQKLGGLLVKKYGLSAKNLGDEGGFAPNLNDPEEALTVIEEAIKAAGYEAGKDIMIGMDVASSEFYDENTADQMIDYFDELLKKHPAIVSIEDALAELDYENWTKLNARLVQLVGDDLYTTNPITIKKGLEGKWCNALLLKVHGIQPDGDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGLQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPSPQVSTAIVEPYNSILATHSMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLSVAEITNSLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVSAAVATIKTKRTIQFVDWCPTGFKMGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFVVISDEHGIDPTGSYHRDS-DLQLERINVYYNEATGAKYVPRAILVDLEPGTSESVRAGQFGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELCESILDVIRKEAESCDCLQGFQLVHSLGGGTGAGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCALRFPGQLNSDLRKLAVNLVPFPRLHFFIVGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRVSYLT-SAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPSNVKSAICDIPPRGLKMAATFIGNTTAFRELFTRVDSQFQKMYARRAFI Trichonympha_agilis GRLVFRAQVVAIHD-LCPIKTNVHLLKYDSAHGRFKVQNLSEKV-GPSELPWVDFVLESTGFYKGHIKAGAKKVVLSVPACTLVCGVNDCISNASCTTNCLGPVAKVINDN-FHITSGFMTTVHSYTNDQKVADDLRRARAAAINIIPTSTGAAKALPIVVKALPPKCLDGLALRVPTITGSLVDLSVNVKEVVTVDQVNAALKAASEYTEDEIVSTDIIHDPHSSILDSKLTKVIVKVLSVRSSAPSGASTGSGEAMELRDKDNSKYGGKGTEKASANVAEKISPAVKFCDLTNLDDKI-CKADGTEL-----KTNIGGNACTAASFALAEAAAKLKGVELFQYLASLPAPCFNILNGGKHAGGNLQIQEFMLTPNTKRSYPDQLRVIAEVYQHLGALLVKEHGVSAKNLGDEGGFAPNLDTPAQALDIIERAVKAAGYVPVDDVKYCLDCASSEFYNEETGDELIEYYQDLINKYPAITSIEDPFDEHDYETWTKFTAAVVQIVGDDLYTTNPKTIAKGIAGKWANALLLKVHGIQPDGDDAFNTFFQETGAGKHVPRAVFVDLEPTVVDEVRTGTYRRLFHPEQIINGKEDAANNYARGHYTVGKEIIDLTLDRVRKLADQCTGLQGFLMFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPA?QISTAVVEPYNSILACHSMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTELQTNLVPYSRIHFPICSYAPVISAEKAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACCLLYRGDVVPKDVGSAVATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMFSKRAFVVVSDEHGIDPTGSYHGDS-DLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGFYTEGQELAESILDVVRKEAESCDSLQGFQLVHSLGGGTGAGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCSLRFPGQLNADLRKLAVNLVPFPRLHFFICGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPNNVKSSITDIPPRGLKMAATFIGNSTSFRELFTRVDSQFQKMYARRAFI Tritrichomonas_foetus GRLVFRAQVVAIHD-LCDIKTNVHLLNYDSAHRKFPVKNIGGRL-GPSQLPWVDVVLESTGIFRGHIVAGAKKVVLSVPSCTLVLGVNDCISNASCTTNCLAPVVKTINDK-FGVKNGFMTTVHSYTNDQVVSDDLRRARAAAMNIIPTTTGAAIALPRVVKALAKGSMDGLSLRVPTITGSLVDVTVNTREAVTKEQVNEALKAAAEYTTDPIVSSDIIDDNHSSIVDGLSTMVLVKVLSVRSSAPSGASTGSNEARELRDNDPKRYNGKGTLQAAQNVTELITPAVVLNNIHDLDRAI-RRVDKPEL-----KEKIGGNATTATSFAFATAGANMNGEELFQYLAKLPTPFFNILNGGKHAGGNLKLQEFMVSPAENIPFPDQLRMVAEVYQKLGGILSKQFGVSAKNLGDEGGFAPLINSPDEALTVIEQAITEAGYKPGEEIRIGLDAAASEFYDKENGDELIQYWADMIEHHPSIVSVEDALDEKDYAHWIKLNKELVQLVGDDLYTTNPNTIKKGLEGNWCNALLLKVHGIQPDGDDAFNTFFSETGSGKHVPRAVFIDLEPTCMDEVRTGTYRQLYHPEQLINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLSDQCTGMQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYSPVISAEKAYHEQLSVAEITNSLFEPANMMVKCDPRHGKYMACTCLYRGDVVPKDVGAAVATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIVEAWSRLDHKFDLMYAKRAFVVISDEHGIDPTGSYHGDS-DLQLERINVYYNEATGGKYVPRAILVDLEPGTMDSVRAGQYGQLFRPDNFVFGQSGAGNNWAKGYYTEGQELAESILDVIRKEAESCDALQGFQLVHSLGGGTGSGLGTLLLNKLREEYPDRILSTYSIVPSPKVSDTVVEPYNCTLSVHQLVESADEVFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMVMSGTTCSLRFPGQLNADLRKLAVNLVPFPRLHFFIVGFAPLTSRGSQQYRALTVPELTSQLFDNKNMMAACDPRRGVYLTVSAHFRGRMSSKEVDEQMLNIQARNTSYFVEWIPNNVKSSICDIPPRGLKMAATFIGNTTAFRELFTRVDSQFQKMYARRAFI Trypanosoma_brucei GRMVFQADVVAVVDMNTDARYFAYQMKYDSVHGKFKILCVKAQ-RNPADLPWVEYVIESTGLFTGHLRGGARKVVISAPAKTFVMGVNHVVSNASCTTNCLAPLVHVLVKEGFGISTGLMTTVHSYTATQKTVDDWRGGRAAALNIIPSTTGAAKAVGMVIPSTQGK-LTGMAFRVPTADVSVVDLTFIATRDTSIKEIDAALKRASKYTDEELVSADFISDSRSSIYDSKATLQNFKIVSVRSAVPSGASTGVYEACELRDGDKKRYVGKGCLQAVKNVNEVIGPALDELKQEELDTLM-LRLDGTPN-----KGKLGANAILGCSMAISKAAAAAKGVPLYRYLARLPVPCFNVINGGKHAGNALPFQEFMIAPVKATSFSEALRMGSEVYHSLRGIIKKKYGQDAVNVGDEGGFAPPIKDINEPLPILMEAIEEAGHR-GK-FAICMDCAASETYDEKTAEQLRETYCKWAHDYP-IVSIEDPYDQDDFAGFAGITEALTQIVGDDLTVTNTERIKMAIEKKACNSLLLKIHGIQPDGDDAFNTFFSETGAGKHVPRAVFLDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVYHAVGGGTGSGLGALLLERLSVDYGKKSKLGYTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAAMLDNEAIYDLTRRNLDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDLTEFQTNLVPYPRIHFVLTSYAPVISAEKAYHEQLSVSEISNAVFEPASMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWSPTGFKCGINYQPPTVVPGGDLAKVQRAVCMIANSTAIAEVFARIDHKFDLMYSKRAFVVISDEHGVDPTGTYQGDS-DLQLERINVYFDEATGGRYVPRSVLIDLEPGTMDSVRAGPYGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVCCKEAESCDCLQGFQICHSLGGGTGSGMGTLLISKLREQYPDRIMMTFSIIPSPKVSDTVVEPYNTTLSVHQLVENSDESMCIDNEALYDICFRTLKLTTPTFGDLNHLVSAVVSGVTCCLRFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMQAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFIEWIPNNIKSSVCDIPPKGLKMAVTFIGNNTCIQEMFRRVGEQFTLMFRRKAFL ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1133] TITLE Fig1B; LINK TAXA = Taxa2; DIMENSIONS NCHAR=243; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 ] [ . . . . . . . . . . . . . . . . . . . . . . . . ] Devescovina_sp._D75 GRLVFRARLYPEQVVAIHDLEITNHLLKFDTAHKEIFVGGWVKNGRLPSLPWDLVDIVLESTGFKHNGVDGYDGHIAGAKRVVLSVPSADEIECTLVLGVNEDLPTISNASCTTNCLAPVVKLNFVNGFMTTVHSYTNDQVVSDMHDLRRARAAGNIIPTSTGAAIALPRVVLSLDGSLRVPTLTGSLVDTLNLVTEVNALIAATELKGILFSDPLVSSDIVSSIVDGSTKVITAGSLVKVLS Devescovina_sp._D77 GRLVFRARLYPEQVIAIHDLDITNHLLKFDTAHNEIFVGGWVKNGRLPSLPWELIDVVLESTGFKHNGVDGYDGHIAGAKRVVLSVPSADEIECTLVLGVNEDLPTISNASCTTNCLAPVVKLNFVNGFMTTVHSYTNDQVVSDMHDLRRARAAGNIIPTSTGAAIALPKVVLCLDGSLRV?TLTGSLVDTLNLVTEVNALTDAAELKGVLFSDPLVSSDIVSSIVDGSTKVITAGSLVKVLS Holomastigotoides_mirabile_02A21 GRLVFRARLYPEQIVAIHDLDITNHLLKYDSAHGEIFVGGWVKNGRIPWLPWELVDVVLESTGYKKDGVDGYDGHIAGARKVVLSVPAGDEIECTLVLGVNEDLPTISNASCTTNCLAPVTKIHWVNGFMTTVHAYTNDQQVADAHDLRRARAAGNIIPTSTGAAKALPIVVLSLDGSIRVPVITGSLVDSFNVPTEVNALKEASPLKGILYVDPIVSSDIISSIVDSETKVIHGGAIVKVLS Hypotrichomonas_acosta GRLVFRARLYPEQVVAVHDLNVVNHLLKYDTAHGEIFVGGWINSGSDPSLPWELVDVVLESTGFRK-GDEGYYGHIAGAKKVILSAPADDDIESTLVLGVNSDLPTISNASCTTNALGPVAQIMFINGFMTTVHAYTNDQVVHDVHDPRRARSACNIVPTSTGIAKALPKVVLSFNGSFRVPVVTGSLIDTVLVCTEVNALKTATPLKGIMYSEPLVSSDIISCVVDGSTQVMT-GSLIKILA Monocercomonas_sp. GRLVFRARLYPEQIVAIHDLDITNHLLKYDTAHREIFVGGWVKCGRLPSLPWELVDVVLESTGFRHDGVDGYDGHISGAKRVVLSVPSADEIECTLVLGVNEDFAVVSNASCTTNCLAPVTKINFVNGFMTTVHSYTNDQVVSDMHDLRRARAAANIIPTSTGAAIALPRVVLSMDGSLRVPTITGSLVDTFNVVTEVNALKAACALKGIMFTDPIVSSDIISSIVDGSTMVLNGGSLVKVLS Pseudotrichonympha_grassii_06B88 GRLVFRARLYPEKVVAIHDLPITNHLLKYDSAHGEIFVGGWVQNEKVPALPWELVDFVLESTGFKKDGVDGYDGHIAGAKKVILSVPASDDIQCTLVCGVNEDLPIISNASCTTNCLGPVAKINFINGFMTTVHSYTNDQKVADMHDLRRARAAANIIPTSTGAAIALPIVVLSLDGALRVPTITGSLVDTVNVVTDVNAVEAASALKGILYVDPIVSTDIISSVFDSLTKVINGGSLVKVLS Spirotrichonympha_leidyi_13A66 GRLVFRARLYPEQVVAIHDLAIVNHLLKYDSAHGEIFVGGWVENGRIPKLKWEKVDVVLESTGYKKDGVDGYDGHIAGAKKVVLSVPAGDEIECTLVLGVNEDVPTISNASCTTNCLAPITKINWITGFMTTVHAYTNDQQVADAHDMRRARAAANIIPTSTGAAKALPIVVLSLDGSIRVPVITGSLVDSFNVPTEINALKAATPLKGILYTDAIVSSDIISSIVDSETKVINGSALVKVLS Stephanonympha_sp._St01 GRLVFRARLYPEQVVAIHDLDLTNHLLKFDTAHKEIFIGGWVKSGRLPSLPWELVDVVLESTGFRKDGVDGYDGHISGAKKVVLSVPSADEIECTLVLGVNEDLPTISNASCTTNCLAPLVKLNFVNGFMTTTHSYTNDQVVSDMHDLRRARAAANIIPTSTGAAIALPRVVLSLDGSLRVPTLTGSLVDSLNLVTEVNALIAATELQGILFSDPLVSSDIVSSIVDGSTKVITLGSLVKVLS Stephanonympha_sp._St03 GRLVFRARLYPEQVVAIHDLDLTNHLLKFDTAHKEIFIGGWVKSGRLPSLPWDLVDVVLESTGFKKDGVDGYDGHISGAKKVVLSVPSADEIECTLVLGVNEDLPTISNASCTTNCLAPLVKLNFVNGFMTTTHSYTNDQVVSDMHDLRRARAAANIIPTSTGAAIALPRVVLSLDGSLRVPTLAGSLVDSLNLVTEVNALIAATELQGILFSDPLVSSDIVSSIVDGSTKVITLGSLVKVLS Stephanonympha_sp._St08 GRLVFRARLYPEQVVAIHDLDLTNHLLKFDTAHKEIFIGGWVKSGRLPSLPWELVDVVLESTGFRKDGVDGYDGHISGAKKVVLSVPSADEIECTLVLGVNEDLPTISNASCTTNCLAPLVKLNFVNGFMTTTHSYTNDQVVSDMHDLRRARAAANIIPTSTGAAIALPRVVLSLDGSLRVPTLTGSLVDSLNLVTEVNALIAATELQGILFSDPLVSSDIVSSIVDGSTKVITLGSLVKVLS Tetratrichomonas_gallinarum GRLVFRARLYPDQVVAIHDLDLTNYLLRYDSAHREILIGGWVKSGRLPSLPWEMIDVVLESTGFRKDGVDGYDGHIAGAKKVVLSVPSADEIECTLVLGVNEDLPTISNASCTTNCLGPVAKLNFISGFMTTVHSYTNDQVVADMHDLRRARAAGNIIPTSTGAAIALPKVCLSLDGALRVPTITGSLVDTVNVCTEVNALKKATSLKGIMYVDPIVSTDIISSIVDSSTKVLNGGTLVKVLS Trichomitus_batrachorum_1 GRLAFRARRYAEQIVAIHDIDITNHLLKYDSAHGEIFVGGWVKSGRTPSLPWEMIDIVLESTGFRKDGVDGYDGHIAGAKKVLLSVPSLDEIDGVIVVGVSNDLKMISAASCTTNCLAPIVKLMFVCGFLTTVHAFTNDQIVADKHDLRRARSAGNMIPTSTRAKFVLPKVILSMDGSIRVPIITGSLVETAVVCTEVNALRAATPLVGILYTDPIVSTDIRSSIIDSSTKAIIGGTLVKVLS Trichomitus_batrachorum_2 GRLVFRARRYADQVVAIHDLDLTNHLLKYDSAHGDLFVGGWVKSGRIPSLPWELVDVVLESTGFRKDGVDGYDGHLAGAKKVVLSVPSADEIECTLVLGVNEDLKTISNASCTTNCLAPVAKLMFINGFMTTVHSYTNDQVVADVHDLRRARSAANMIPTSTGAAIALPKVVLSMDGSIRVPTVTGSIVDTVNVCTEVNALKAATPLVGIMYTDPIVSTDIISSIVDSCTKVINGGSLVKVLS Trichomonas_vaginalis_1 GRLVFRARLYPDQVVAIHDLDITNYLLKYDTAHREVFVGGWVKSGRLPSLPWELIDVVLESTGFRKEGIDGYDGHLSGAKKVVLSVPSADEIECTLVLGVNEDLPTISNASCTTNCLGPVAKLNFINGFMTTVHSYTNDQVVADMHDLRRARAAGNIIPTSTGAAIALPKVCLSLDGALRVPTITGSLVDTVNVVTEVNALKKATSLKGIMYVDPIVSSDIISSIVDASTKVLNGGTLVKVLS Trichomonas_vaginalis_2 GRLVFRARLYPDQVVAIHDLDITNYLLKYDTAHREVFVGGWVKSGRLPSLPWELIDVVLESTGFRKDGVDGYDGHISGAKKVVLSVPSADEIECTLVLGVNEDLPTISNASCTTNCLGPVAKLNFINGFMTTVHSYTNDQVVADMHDLRRARAAGNIIPTSTGAAIALPKVCLSLDGALRVPTITGSLVDTVNVVTEVNALKKATSLKGIMYVDPIVSSDIISSIVDASTKVLNGGTLVKVLS Trichonympha_agilis GRLVFRAFLYPEQVVAIHDLPITNHLLKYDSAHGGVFCSGWVQNEKVPSLPWDLVDFVLESTGYKASGVDGYDGHIAGAKKVVLSVPASDAIQCTLVCGVNEDLPVISNASCTTNCLGPVAKINFISGFMTTVHSYTNDQKVADMHDLRRARAAANIIPTSTGAAKALPIVVLCLDGALRVPTITGSLVDSVNVVTQVNALKAASPLKGILYTDEIVSTDIISSILDSLTKVINGGTLVKVLS Tritrichomonas_foetus_1 GRLVFRARLYPEQVVAIHDLDITNHLLNYDSAHREVFVGGWVKNGRLPSLPWELVDVVLESTGFRHD-VDGYDGHIAGAKKVVLSVPSADEIECTLVLGVNEDLPTISNASCTTNCLAPVVKINFVNGFMTTVHSYTNDQVVSDMHDLRRARAAANIIPTTTGAAIALPRVVLSMDGSLRVPTITGSLVDTVNTVTQVNALKAAAALKGILYTDPIVSSDIISSIVDGSTMVLNGGSLVKVLS Tritrichomonas_foetus_2 GRLVFRARLYPEQIVAVHDLDITNHLLNYDSAHQELFVGGWVKNGRLPSLPWELVDVVLESTGFRHDGVDGYDGHLAGAKKVVLSVPSADEIECTLVLGVNEDLPTISNASCTTNCLAPVIKLNFINGYMTTVHAYTNDQVVSDMHDLRRARAAANIIPTSTGAAIALTRVVLCMDGALRVPAITGSLVDTVNTVTQVNALKAASALRGILYTEPIVSSDIISSIVDSSTMVLNGGSLVKVLS ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1134] TITLE Fig1A; LINK TAXA = Taxa2; DIMENSIONS NCHAR=326; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Devescovina_sp._D75 GRLVFRAIRKLYPTEVQVVAIHDLCEIKTNVHLLKFDTAHKIWPEPIVQTG-EDTFKVGDGADAWTVKNIGGRLSPSQLPWADLGVDIVLESTGIFKKHAVV-ENGAVKSDGYDGHIIAGAKRVVLSVPSADEIECTLVLGVNNEDLKPDTKNISNASCTTNCLAPVVKVLNEAFGVFNGFMTTVHSYTNDQVVSD-VMHADLRRARAAGQNIIPTSTGAAIALPRVVKGLTPKSLDGISLRVPTLTGSLVDVTLNLKKTVTVQEVNDALIAATNRPELKGILVFSTDPLVSSDIVDNPASSIVDGLSTKVINTEGAAGSLVKVLS Devescovina_sp._D77 GRLVFRAVRKLYPKEVQVIAIHDLCDIKTNVHLLKFDTAHNIWPEPIIQTS-GDEFRVGDGPDAWTVKNIGGRLGPSQLPWGELGIDVVLESTGIFKKHAVV-ENGAVKSDGYDGHIIAGAKRVVLSVPSADEIECTLVLGVNDEDLKPDTKNISNASCTTNCLAPVVKVLNEAFGVFNGFMTTVHSYTNDQVVSD-VMHADLRRARAAGQNIIPTSTGAAIALPKVVKGLTPKCLDGISLRV?TLTGSLVDVTLNLKKTVTIEEVNKALTDAASRPELKGVLVFSTDPLVSSDIVDNPASSIVDGLSTKVINTEGAAGSLVKVLS Holomastigotoides_mirabile_02A21 GRLVFRAVRKLYPTECQIVAIHDLLDIKTNVHLLKYDSAHGQLGESIEITG-PDTFTVGTGPTAWVVKNIVGRIDPWQLPWKELGVDVVLESTGVYKTKANIGADGKVIKDGYDGHIKAGARKVVLSVPAGDEIECTLVLGVNNEDLKPETQHISNASCTTNCLAPVTKIIHQKWKVVNGFMTTVHAYTNDQQVAD-LAHADLRRARAAGQNIIPTSTGAAKALPIVVKGLRPKSLDGISIRVPVITGSLVDTSFNVEGQPTAAEVNQALKEASESGPLKGILSYVTDPIVSSDIINSTFSSIVDSLETKVIPHPNG-GAIVKVLS Hypotrichomonas_acosta GRLVFRAVRELYPNECQVVAVHDLSNVAVNAHLLKYDTAHGIFPEKIERTG-NNVFTVGEGPNMWTINSMEGSDGPSKLPWKELGVDVVLESTGVFRKK------GTDTKEGYYGHIKAGAKKVILSAPADDDIESTLVLGVNDSDLKPETQCISNASCTTNALGPVAQTIMEHFKITNGFMTTVHAYTNDQVVHD-GVHSDPRRARSACQNIVPTSTGIAKALPKVVRSLPSQSFNGISFRVPVVTGSLIDLTVLVEKKCTRDEVNAALKTATLSGPLKGIMDYSEEPLVSSDIIHNQFSCVVDGLSTQVMDTKD--GSLIKILA Monocercomonas_sp. GRLVFRAVRRLYPTECQIVAIHDLCDIKTNVHLLKYDTAHRSFGEKIEITG-ADTFTVGEGSNVWTVKCIGGRLGPSELPWGELGVDVVLESTGIFRRHLTKKADGSVDKDGYDGHIVSGAKRVVLSVPSADEIECTLVLGVNDEDFTAAVKCVSNASCTTNCLAPVTKVINDQFKVLNGFMTTVHSYTNDQVVSD-VMHADLRRARAAAMNIIPTSTGAAIALPRVVKALPPKSMDGLSLRVPTITGSLVDVTFNVEKAVTKEEVNNALKAACETPALKGIMKFTMDPIVSSDIIDDNHSSIVDGLSTMVLPNPKG-GSLVKVLS Pseudotrichonympha_grassii_06B88 GRLVFRAIRELYPVECKVVAIHDLCPIKTNIHLLKYDSAHGVFKEDIVLGADGKSFIVGTGANQWVVQNLDEKVGPAGLPWKELGVDFVLESTGFFKTKAKVGPDGKVTSDGYDGHIIAGAKKVILSVPASDDIQCTLVCGVNDEDLKPEITTISNASCTTNCLGPVAKVINDAFKIKNGFMTTVHSYTNDQKVAD-NMHSDLRRARAAAINIIPTSTGAAIALPIVVKGLPPKSLDGIALRVPTITGSLVDLTVNVEATVTKDDVNKAVEAASKTNALKGILKYVTDPIVSTDIIHDPHSSVFDSQLTKVIPNKDG-GSLVKVLS Spirotrichonympha_leidyi_13A66 GRLVFRAVRKLYPTECQVVAIHDLFAIDVNIHLLKYDSAHGTWPEPITKID-NEHFQVGEGPTAWKVENMVGRIHPKDLKWGEKKVDVVLESTGVYKTKAQKGPDGKVTRDGYDGHIAAGAKKVVLSVPAGDEIECTLVLGVNDEDVKPTTTMISNASCTTNCLAPITKIINSKWKIITGFMTTVHAYTNDQQVAD-LAHQDMRRARAAAQNIIPTSTGAAKALPIVVHDLRPKSLDGISIRVPVITGSLVDTSFNVEGTPTRDEINAALKAATLEGPLKGILGYTEDAIVSSDIINCTLSSIVDSLETKVIPNPDGKSALVKVLS Stephanonympha_sp._St01 GRLVFRACRKLYPTEVQVVAIHDLCDLKTNIHLLKFDTAHKIWPESIVQTA-DDEFQIGDGPGAWTVKSIGGRLGPSQLPWAELGVDVVLESTGIFRKKAVI-EDGKVKADGYDGHIVSGAKKVVLSVPSADEIECTLVLGVNNEDLTPATKCISNASCTTNCLAPLVKVLNEAFGVINGFMTTTHSYTNDQVVSD-VMHADLRRARAAAQNIIPTSTGAAIALPRVVKGLTPKSLDGLSLRVPTLTGSLVDVSLNLKKVVTIQEVNDALIAATKTPELQGILVFSTDPLVSSDIVDNPASSIVDGLSTKVITTPGLPGSLVKVLS Stephanonympha_sp._St03 GRLVFRACRKLYPTEVQVVAIHDLCDLKTNIHLLKFDTAHKIWPEPIVKTA-DDEFQIGDGPDAWKVKSIGGRLGPSQLPWADLGVDVVLESTGIFKKKAVL-EDGKVKSDGYDGHIISGAKKVVLSVPSADEIECTLVLGVNNEDLTPATKCISNASCTTNCLAPLVKVLNEAFGVINGFMTTTHSYTNDQVVSD-VMHADLRRARAAAQNIIPTSTGAAIALPRVVKGLTPKSLDGISLRVPTLAGSLVDVSLNLKKVVTIQEVNDALIAATKTPELQGILVFSTDPLVSSDIVDNPASSIVDGLSTKVITTPGLPGSLVKVLS Stephanonympha_sp._St08 GRLVFRACRKLYPSEVQVVAIHDLCDLKTNIHLLKFDTAHKIWPEPIVKTA-EDEFQIGEGPDAWTVKSIGGRLGPSQLPWAELGVDVVLESTGTFRKKAVV-EDGQVKSDGYDGHIISGAKKVVLSVPSADEIECTLVLGVNNEDLTPATKCISNASCTTNCLAPLVKVLNEAFGVINGFMTTTHSYTNDQVVSD-VMHADLRRARAAAQNIIPTSTGAAIALPRVVKGLTPKSLDGLSLRVPTLTGSLVDVSLNLKKVVTIQEVNDALIAATRTPELQGILIFSTDPLVSSDIVDNPASSIVDGLSTKVITTPGLPGSLVKVLS Tetratrichomonas_gallinarum GRLVFRAVRALYPRDCQVVAIHDLCDLKTNAYLLRYDSAHRTFQEEITVNEQESTLTIGTGDDKWVVKSLGGRLNPSQLPWKEMGIDVVLESTGIFRSKAVV-EDGKVVKDGYDGHILAGAKKVVLSVPSADEIECTLVLGVNDEDLKPETKCISNASCTTNCLGPVAKTLNNAFGIVSGFMTTVHSYTNDQVVAD-TMHKDLRRARAAGMNIIPTSTGAAIALPKVCHGLPKGSLDGFALRVPTITGSLVDLTVNVKAICTKEEVNAALKKATEEGSLKGIMTYVTDPIVSTDIIGCQYSSIVDSLSTKVLKNPEGFGTLVKVLS Trichomitus_batrachorum_1 GRLAFRAVRERYAKEIQIVAIHDIGDIKTNTHLLKYDSAHGKFTEEIKILS-NDTFTVGTGDNLWTVKSLEGRTPPSQLPWGEMQIDIVLESTGAFRRKLVLAPDGSVQNDGYDGHIRAGAKKVLLSVPSLDEIDGVIVVGVSTNDLRKEMKCISAASCTTNCLAPIVKVLMEQFEVVCGFLTTVHAFTNDQIVADRTKHKDLRRARSAGINMIPTSTRAKFVLPKVIPGLKPGSMDGLSIRVPIITGSLVEVTAVVKKSCTVAEVNGALRAATQSGPLVGILDYTEDPIVSTDIRSNPFSSIIDSISTKAIQIPTG-GTLVKVLS Trichomitus_batrachorum_2 GRLVFRAIRERYAKDCQVVAIHDLCDLRTNVHLLKYDSAHGRFQDELKIIA-DDAFTVGSGADMWTVKSVGGRIGPSQLPWAELKVDVVLESTGIFRTKMVLKADGSVEKDGYDGHLKAGAKKVVLSVPSADEIECTLVLGVNNEDLKKETSCISNASCTTNCLAPVAKTLMEHFEIINGFMTTVHSYTNDQVVAD-TVHKDLRRARSAAVNMIPTSTGAAIALPKVVHALPPKSMDGLSIRVPTVTGSIVDVTVNVKKACTVAEVNAALKAATESGPLVGIMKYTEDPIVSTDIISDPYSSIVDSQCTKVIPNPAG-GSLVKVLS Trichomonas_vaginalis_1 GRLVFRACRKLYPKDIQVVAIHDLGDIKTNVYLLKYDTAHRAFPEPVTVDEAKQEFTVGEGADKWVVKSIGGRLGPSQLPWKELGIDVVLESTGIFRTKAEKDAEGKIKKDGYDGHLVSGAKKVVLSVPSADEIECTLVLGVNDEDLKPETKCISNASCTTNCLGPVAKTLNNAFGIRNGFMTTVHSYTNDQVVAD-TMHKDLRRARAAGMNIIPTSTGAAIALPKVCHGLPPKSLDGFALRVPTITGSLVDLTVNVNAKVTKEEVNAALKKATEEGSLKGIMTYVTDPIVSSDIIGCQYSSIVDALSTKVLPNPEGQGTLVKVLS Trichomonas_vaginalis_2 GRLVFRACRKLYPKDVQVVAIHDLGDIKTNVYLLKYDTAHRAFPEPVTVDEEKQEFTVGEGDDKWVVKSIGGRLGPSQLPWKELGIDVVLESTGIFRSKAEV-VDGKVTKDGYDGHIISGAKKVVLSVPSADEIECTLVLGVNDEDLKPETKCISNASCTTNCLGPVAKTLNNAFGIRNGFMTTVHSYTNDQVVAD-TMHKDLRRARAAGMNIIPTSTGAAIALPKVCHGLPPKSLDGFALRVPTITGSLVDLTVNVNAKVTKEEVNAALKKATEEGSLKGIMTYVTDPIVSSDIIGCQYSSIVDALSTKVLPNPEGQGTLVKVLS Trichonympha_agilis GRLVFRAIFELYPTECQVVAIHDLCPIKTNVHLLKYDSAHGRFKGDVKIGSDEKSFICSSGSTSWTVQNLSEKVGPSELPWADLGVDFVLESTGFYKTAYKADASGKVTTDGYDGHIKAGAKKVVLSVPASDAIQCTLVCGVNDEDLTPAVTCISNASCTTNCLGPVAKVINDNFHITSGFMTTVHSYTNDQKVAD-LMHSDLRRARAAAINIIPTSTGAAKALPIVVKALPPKCLDGLALRVPTITGSLVDLSVNVKEVVTVDQVNAALKAASEDGPLKGILKYTEDEIVSTDIIHDPHSSILDSKLTKVIPNTSGNGTLVKVLS Tritrichomonas_foetus_1 GRLVFRAVRTLYPTECQVVAIHDLCDIKTNVHLLNYDSAHRKFPEVVRVTG-EDTFEVGEGANKWVVKNIGGRLGPSQLPWKELNVDVVLESTGIFRTHCVKEGD-NVTKDGYDGHIVAGAKKVVLSVPSADEIECTLVLGVNDEDLKPDTTCISNASCTTNCLAPVVKTINDKFGVKNGFMTTVHSYTNDQVVSD-VMHKDLRRARAAAMNIIPTTTGAAIALPRVVKALAKGSMDGLSLRVPTITGSLVDVTVNTREAVTKEQVNEALKAAAETPALKGILRYTTDPIVSSDIIDDNHSSIVDGLSTMVLPNPDG-GSLVKVLS Tritrichomonas_foetus_2 GRLVFRAVRDLYPKECQIVAVHDLCDIATNVHLLNYDSAHQRFPEQLTVTA-EDTFEVGTGSDKWVVKNLTGRLGPSQLPWKELDVDVVLESTGLFRTHCVKGEDGSVTKDGYDGHLLAGAKKVVLSVPSADEIECTLVLGVNDEDLKPDTNCISNASCTTNCLAPVIKVLNDTFGIRNGYMTTVHAYTNDQVVSD-IMHKDLRRARAAAMNIIPTSTGAAIALTRVVKNLTRGCMDGLALRVPAITGSLVDITVNTREKVTKDQVNQALKAASESEALRGILGYTDEPIVSSDIIGDRHSSIVDSLSTMVLDNEKG-GSLVKVLS ; END; BEGIN TREES; TITLE Tb7728; LINK TAXA = Taxa2; TRANSLATE 1 Trichonympha_agilis, 2 Pseudotrichonympha_grassii_06B88, 3 Holomastigotoides_mirabile_02A21, 4 Spirotrichonympha_leidyi_13A66, 5 Devescovina_sp._D75, 6 Devescovina_sp._D77, 7 Stephanonympha_sp._St01, 8 Stephanonympha_sp._St03, 9 Stephanonympha_sp._St08, 10 Trichomitus_batrachorum_1, 11 Trichomitus_batrachorum_2, 12 Hypotrichomonas_acosta, 13 Monocercomonas_sp., 14 Tritrichomonas_foetus_1, 15 Tritrichomonas_foetus_2, 16 Tetratrichomonas_gallinarum, 17 Trichomonas_vaginalis_1, 18 Trichomonas_vaginalis_2; TREE Fig._1B = [&R] (2,1,((((16,(18,17)),((13,(14,15)),((8,(9,7)),(5,6)))),(12,(11,10))),(4,3))); END; BEGIN TREES; TITLE Tb7730; LINK TAXA = Taxa5; TRANSLATE 1 Trichonympha_agilis_1, 2 Trichonympha_agilis_2, 3 Pseudotrichonympha_grassii_03A54, 4 Holomastigotoides_mirabile_03B79, 5 Spirotrichonympha_leidyi_02A66, 6 Devescovina_sp._D01, 7 Devescovina_sp._D10, 8 Stephanonympha_sp._St10, 9 Stephanonympha_sp._St48, 10 Trichomitus_batrachorum, 11 Tritrichomonas_foetus_1, 12 Tritrichomonas_foetus_2, 13 Monocercomonas_sp._1, 14 Monocercomonas_sp._2, 15 Hypotrichomonas_acosta, 16 Tetratrichomonas_gallinarum, 17 Trichomonas_vaginalis_1, 18 Trichomonas_vaginalis_2; TREE Fig._2B = [&R] (2,1,(3,(((10,(15,(16,(18,17)))),(13,14)),(9,(8,((6,7),((12,11),(4,5)))))))); END; BEGIN TREES; TITLE Tb7731; LINK TAXA = Taxa1; TRANSLATE 1 Trichonympha_agilis, 2 Pseudotrichonympha_grassii_02A38, 3 Holomastigotoides_mirabile_04A74, 4 Spirotrichonympha_leidyi_Sp28, 5 Tritrichomonas_foetus, 6 Monocercomonas_sp._1, 7 Monocercomonas_sp._2, 8 Trichomitus_batrachorum_1, 9 Trichomitus_batrachorum_2, 10 Hypotrichomonas_acosta_2, 11 Hypotrichomonas_acosta_3, 12 Trichomonas_vaginalis, 13 Tetratrichomonas_gallinarum_1, 14 Tetratrichomonas_gallinarum_2, 15 Tetratrichomonas_gallinarum_3, 16 Devescovina_sp._D14, 17 Devescovina_sp._D16, 18 Stephanonympha_sp._St20, 19 Stephanonympha_sp._St19; TREE Fig._2C = [&R] (2,1,((10,11),(((((17,16),(19,18)),((8,9),(3,4))),(5,(7,6))),(12,(15,(13,14)))))); END; BEGIN TREES; TITLE Tb7727; LINK TAXA = Taxa2; TRANSLATE 1 Trichonympha_agilis, 2 Pseudotrichonympha_grassii_06B88, 3 Holomastigotoides_mirabile_02A21, 4 Spirotrichonympha_leidyi_13A66, 5 Devescovina_sp._D75, 6 Devescovina_sp._D77, 7 Stephanonympha_sp._St01, 8 Stephanonympha_sp._St03, 9 Stephanonympha_sp._St08, 10 Trichomitus_batrachorum_1, 11 Trichomitus_batrachorum_2, 12 Hypotrichomonas_acosta, 13 Monocercomonas_sp., 14 Tritrichomonas_foetus_1, 15 Tritrichomonas_foetus_2, 16 Tetratrichomonas_gallinarum, 17 Trichomonas_vaginalis_1, 18 Trichomonas_vaginalis_2; TREE Fig._1A = [&R] (2,1,((((13,(14,15)),((8,(9,7)),(6,5))),((12,(11,10)),(16,(17,18)))),(4,3))); END; BEGIN TREES; TITLE Tb7732; LINK TAXA = Taxa3; TRANSLATE 1 Trichonympha_agilis, 2 Pseudotrichonympha_grassii, 3 Holomastigotoides_mirabile, 4 Spirotrichonympha_leidyi, 5 Trichomitus_batrachorum, 6 Hypotrichomonas_acosta, 7 Tetratrichomonas_gallinarum, 8 Trichomonas_vaginalis, 9 Tritrichomonas_foetus, 10 Monocercomonas_sp., 11 Devescovina_sp., 12 Stephanonympha_sp., 13 Spironucleus_barkhanus, 14 Toxoplasma_gondii, 15 Trypanosoma_brucei, 16 Homo_sapiens, 17 Saccharomyces_cerevisiae, 18 Arabidopsis_thaliana, 19 Guillardia_theta, 20 Chlamydomonas_reinhardtii; TREE Fig._3 = [&R] (2,1,(((16,17),(13,(14,((19,15),(20,18))))),((((9,10),(11,12)),((5,6),(8,7))),(3,4)))); END; BEGIN TREES; TITLE Tb7729; LINK TAXA = Taxa4; TRANSLATE 1 Trichonympha_agilis, 2 Pseudotrichonympha_grassii_06B34, 3 Pseudotrichonympha_grassii_07A70, 4 Holomastigotoides_mirabile_H53, 5 Spirotrichonympha_leidyi_09B45, 6 Devescovina_sp._D31, 7 Stephanonympha_sp._St07, 8 Stephanonympha_sp._St13, 9 Trichomitus_batrachorum_2, 10 Hypotrichomonas_acosta_2, 11 Monocercomonas_sp._2, 12 Monocercomonas_sp._1, 13 Trichomitus_batrachorum_1, 14 Hypotrichomonas_acosta_1, 15 Tritrichomonas_foetus, 16 Tetratrichomonas_gallinarum, 17 Trichomonas_vaginalis_1, 18 Trichomonas_vaginalis_4, 19 Trichomonas_vaginalis_2; TREE Fig._2A = [&R] (1,(2,3),((19,(18,17)),((13,14),(((5,4),(6,(7,8))),((15,16),(12,(11,(9,10)))))))); END;