#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 26, 2024; 19:09 GMT TreeBASE (cc) 1994-2008 Study reference: Guimarães S.D., Matos K.S., Tessmann D.J., Seixas C.D., & Pfenning L.H. 2016. Fusarium paranaense sp. nov., a new species within the Fusarium solani species complex that causes red root rot on soybean in Brazil. Fungal Biology, 120(1): 51-60. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S15755] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=34; TAXLABELS 'Fusarium brasiliense NRRL_22743' 'Fusarium crassistipitatum NRRL_31949' 'Fusarium cuneirostrum NRRL_31104' 'Fusarium falciforme NRRL_32721' 'Fusarium falciforme NRRL_43503' 'Fusarium illudens NRRL_22090' 'Fusarium keratoplasticum FRC_S.2477' 'Fusarium lichenicola NRRL_28030' 'Fusarium paranaense CML_1771' 'Fusarium paranaense CML_1830' 'Fusarium paranaense CML_1833' 'Fusarium paranaense CML_1988' 'Fusarium paranaense CML_1993' 'Fusarium paranaense CML_1995' 'Fusarium paranaense CML_2009' 'Fusarium paranaense CML_2022' 'Fusarium paranaense CML_526' 'Fusarium paranaense CML_860' 'Fusarium petroliphulum NRRL_32856' 'Fusarium phaseoli NRRL_22276' 'Fusarium plagianthi NRRL_22632' 'Fusarium solani batatas NRRL_22400' 'Fusarium solani cucurbitae NRRL_22098' 'Fusarium solani mori NRRL_22230' 'Fusarium solani piperis CML_2186' 'Fusarium solani piperis CML_2187' 'Fusarium solani piperis NRRL_22570' 'Fusarium solani pisi NRRL_22820' 'Fusarium solani robiniae NRRL_22161' 'Fusarium solani xanthoxlyli NRRL_22163' 'Fusarium striatum NRRL_20101' 'Fusarium tucumaniae CML_2448' 'Fusarium tucumaniae NRRL_31096' 'Fusarium virguliforme NRRL_34551' ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M50860] TITLE Fusarium_red_root_rot_on_soybean_in_Brazil; LINK TAXA = Taxa1; DIMENSIONS NCHAR=1199; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] 'Fusarium brasiliense NRRL_22743' CTTTCACATTTGCGACGAACCAACACCCCTATCGGACGAGATGGAAAGCTCGCCAAGCCCCGTCAGCTACACAACACC--------------G--C--A-----------------------------------------------------------T--T--------T--------------------C--------------------------G--C--A-----------A--------------------C-----------------C-----------C-----C-----G--------------------T--A-----------G---C----------TC----------------A--C-----------------C-----------------T--------C--------------A--A-----------------------C--C--T--C-----------------------G-----------------C---------A-C--------------G-----------------------------------------------------T--T--T--------------------A------TCATCGCGATCTGCTCATCTCGGGTCGTGGAACCCCGCCTGGCA---T------------------------CC---C----G----C-----T-----------------------C-AGGACTC----------C-T----G------C---G----------ATC---------------------------------------------------------------------------------------G----C-----------CC----------C---------------C------TC--------G-------CCC------G--------------------CG-G----C----------T--------------------------C-A-----C--------------------------------------C------T----G--------G---------C-GCG-----A---A-----CTCA------------------------C----------------------------------------------- 'Fusarium crassistipitatum NRRL_31949' CTTTCACATTTGCGACGAACCAACACCCCTATCGGACGAGATGGAAAGCTCGCCAAGCCCCGTCAGCTACACAACACC--------------G--C--A-----------------------------------------------------------T--T--------T--------------------C--------------------------G--C--A-----------A--------------------C-----------------C-----------C-----C-----G--------------------T--A-----------G---C----------TC----------------A--C-----------------C-----------------T--------C--------------A--A-----------------------C--C--T--C-----------------------G-----------------C---------A-C--------------G-----------------------------------------------------T--T--T--------------------A---------T------------------------CC---C----G----C-----T-----------------------C-AGGACTC----------C-T----G------C---G----------ATC---------------------------------------------------------------------------------------G----C-----------CC----------C---------------C------TC--------G-------CCC------G--------------------CG-G----C----------T--------------------------C-A-----C--------------------------------------C------T----G--------G---------C-GCG-----A---A-----CTCA------------------------C------------------------------------------------------------------------------------------- 'Fusarium cuneirostrum NRRL_31104' CTTTCACATTTGCGACGAACCAACACCCCTATCGGACGAGATGGAAAGCTCGCCAAGCCCCGTCAGCTACACAACACC--------------G--C--A-----------------------------------------------------------T--T--------T--------------------C--------------------------G--C--A-----------A--------------------C-----------------C-----------C-----C-----G--------------------T--A-----------G---C----------TC----------------A--C-----------------C-----------------T--------C--------------A--A-----------------------C--C--T--C-----------------------G-----------------C---------A-C--------------G-----------------------------------------------------T--T--T--------------------A------------------------------------------------------T------------------------CC---C----G----C-----T-----------------------C-AGG---GGGCGGGGTATT-CATCAGTCACTTCATACTGACAATCATCTACAGACCGGTCACTTGATCTACCAGTGCGGTGACTCA---------C-T----G------C---G----------ATC---------------------------------------------------------------------------------------G----C-----------CC----------C---------------C------TC--------G-------CCC------G----G---------------CG-G----C-------------------------------------C-A--------------------------------------------C------T----G--------G---------C-GCG-----A---A--- 'Fusarium falciforme NRRL_32721' CTTTCACATTTGCGACGAACCAACACCCCTATTGGACGAGATGGAAAGCTCGCCAAGCCCCGTCAGCTACACAACACC--------------------A-----------T-----------------------------------C--------------------------------------------------------------------------C-----------T-----------------------------------------------------C--------------------------------------T------------C-----------C-------T--------------------------------------------------------------------------------------C--------------C--------------------------T--G--------------------------------T-----------G--------------------G-----------------------------------------T--------------------------------T----------------------------------------T----------------------------TCTC----------------------------G---------------------------------------------------------------------------------------------------------C----------C-C--------------------------C------T---------G----------------G----C----TT----------C-G-------------T-T---------------------A------C--------------------------------------------C------T----G---------------------CA---A-----A----G-CCA-------------------------------------------------------------------------------------------------------------------- 'Fusarium falciforme NRRL_43503' CTTTCACATTTGCGACGAACCAACACCCCTATTGGACGAGATGGAAAGCTCGCCAAGCCCCGTCAGCTACACAACACC--------------------A-----------T-----------------------------------C--------------------------------------------------------------------------C-----------T-----------------------------------------------------C--------------------------------------T------------C-----------C-------T--------------------------------------------------------------------------------------C--------------C--------------------------T--G--------------------------------T-----------G--------------------G-----------------------------------------T--------------------------------T----------------------------------------T----------------------------TCTC----------------------------G------------G--------------------------------------------------------------------------------------------C----------C-C--------------------------C------T---------G----------------G----C-----T----------C-G-------------T-T--------T------------A------C--------------------------------------------C------T----G---------------------CA---------A----G-CCA-------------------------------------------------------------------------------------------------------------------- 'Fusarium illudens NRRL_22090' CTGTCGCATTTGCGACGAACCAACACCCCTATCGGACGAGATGGAAAGCTCGCCAAACCCCGTCAGCTTCACAACACC--------------------A--------A-----------------------------A--T-----C--------------------T-----------C--G---T----C--------------------------G--C-----G--A--------T--A-----T--------------------------C--C--------C-----C--T--G--T-----------------T------T----T--C--GC----------T-------T------A-----------A-----------C-----------------------------------------A-----------------------------C--T--C--C--------------GT-TC-T-----------A--------------------T-----------G--------------------C-----------------A-----------G--T-----T--------------------A---------T------------------------TC-----TG------------T-------A------G----------AG--CTC---------TC-T---------T---G-G------------C----------------------------------------?------------------------------------------------C--C---------A-CC----------C---------------C------AT--------G------GCCC------G---------T-----------C-G-----G---------T------------T---------G-----A-------------------------------------AAAA---C------T-A--G--------G---T-----C-GCAG--------A-T--G-TCA-T-------------C--------------------------------------------------------------------------T-----------T------------- 'Fusarium keratoplasticum FRC_S.2477' -GTTCACATTTGCGACGAACCAACACCCCTATTGGACGAGATGGAAAGCTCGCCAAGCCCCGTCAGCTACACAACACC---G--------------------A-----------T-----------------------------------C----------G--T--------------------C-----------------------------------------C-------------G-----------------------------------------------------C-------------------------G--------------T------------C-----------C-------T-------------------------------G-------------------------------------------------------------------------------G--------------------T--G--------------------------------T-----------G----------G-------------------------------------------------------------------------------G-------------------------------------------------T-----A--------------------T-------------------------------------------------------------------------------GTCTC----------------------------G----------------------------------------------G---------------------------------------------------T--------CT---------C-C-----G-----------------T----C------T---G-----G----------------G----C-----T-----------GC-G-------------T-----------------------A------C-------------------------------G--------------C------T----G---------------------CA---------A----G-CCA----------G 'Fusarium lichenicola NRRL_28030' CTTTCGCATTTGCGACGAACCAATACCCCTATTGGACGAGATGGAAAGCTCGCCAAGCCCCGTCAGCTACACAACACC--------------------A-----------------------------------------------C-----------------------T-----T--C-----------C--------------T-----C--------C--------------A--------------------------------------------------------------------------------------------------G---C----------------------------A--------------------------------------------------------------A-----------------------------C--------------------A-----T-----------------------------------------------------------------------------------------------------------T-----------------------------------T----------------------------------------T--------------------------G--CTCA---------A-T---------T-----G---------------------------------------------------------------------------------------------------------C----------CGC------C---C---------------C------T---------G-A-C------------G----C------T------------G----------C-C-T-------TTA-CT--------A------C--------G---------------------------C-------C------T----G------------------C--CG------A--A------TCA------------------------------------------------------------------------------------------------------T------------- 'Fusarium paranaense CML_1771' CTTTCACATTTGCGACGAACCAACACCCCTATTGGACGAGATGGAAAGCTCGCCAAGCCCCGTCAGCTACACAACACC--------------------A-----------T-----------------------------------C--------------------------------C-----------------------------------------C-----------------------------------------------------------------C--------------------------------------T------------C-----------C-------T--------------------------------------------------------------------------------------C--------------C--------------------------T--G--------------------------------T-----------G--------------------------------------------------------------T--------------------------------T----------------------------------------T----------------------------TCTC----------------------------G---------------------------------------------------------------------------------------------------------C----------C-C-A--------C---------------C------T---------G----------------G----C-----T----------C-G-------------T-----------------------A------C--------------------------------------------C------T----G---------------------CA---------A----G-CCA-------------------------------------------------------------------------------------------------T------------------ 'Fusarium paranaense CML_1830' CTTTCACATTTGCGACGAACCAACACCCCTATTGGACGAGATGGAAAGCTCGCCAAGCCCCGTCAGCTACACAACACC--------------------A-----------T-----------------------------------C--------------------------------C-----------------------------------------C-----------------------------------------------------------------C--------------------------------------T------------C-----------C-------T--------------------------------------------------------------------------------------C--------------C--------------------------T--G--------------------------------T-----------G--------------------------------------------------------------T--------------------------------T----------------------------------------T----------------------------TCTC----------------------------G---------------------------------------------------------------------------------------------------------C----------C-C-A--------C---------------C------T---------G----------------G----C-----T----------C-G-------------T-----------------------A------C--------------------------------------------C------T----G---------------------CA---A-----A----G-CCA-------------------------------------------------------------------------------------------------T------------------ 'Fusarium paranaense CML_1833' CTTTCACATTTGCGACGAACCAACACCCCTATTGGACGAGATGGAAAGCTCGCCAAGCCCCGTCAGCTACACAACACC--------------------A-----------T-----------------------------------C--------------------------------C-----------------------------------------C-----------------------------------------------------------------C--------------------------------------T------------C-----------C-------T--------------------------------------------------------------------------------------C--------------C--------------------------T--G--------------------------------T-----------G--------------------------------------------------------------T--------------------------------T----------------------------------------T----------------------------TCTC----------------------------G---------------------------------------------------------------------------------------------------------C----------C-C-A--------C---------------C------T---------G--------------G-G----C-----T----------C-G-------------T-----------------------A------C--------------------------------------------C------T----G---------------------CA---------A----G-CCA-------------------------------------------------------------------------------------------------T------------------ 'Fusarium paranaense CML_1988' CTTTCACATTTGCGACGAACCAACACCCCTATTGGACGAGATGGAAAGCTCGCCAAGCCCCGTCAGCTACACAACACC--------------------A-----------T-----------------------------------C--------------------------------C-----------------------------------------C-----------------------------------------------------------------C--------------------------------------T------------C-----------C-------T--------------------------------------------------------------------------------------C--------------C--------------------------T--G--------------------------------T-----CG----G--------------------------------------------------------------T--------------------------------T----------------------------------------T----------------------------TCTC------------------T---------G---------------------------------------------------------------------------------------------------------C----------C-C-A--------C---------------C------T---------G----------------G----C-----T----------C-G-------------T-----------------------A------C--------------------------------------------C------T----G---------------------CA---A-----A----G-CCA-------------------------------------------------------------------------------------------------T------------------ 'Fusarium paranaense CML_1993' CTTTCACATTTGCGACGAACCAACACCCCTATTGGACGAGATGGAAAGCTCGCCAAGCCCCGTCAGCTACACAACACC--------------------A-----------T-----------------------------------C--------------------------------C-----------------------------------------C-----------------------------------------------------------------C--------------------------------------T------------C-----------C-------T--------------------------------------------------------------------------------------C--------------C--------------------------T--G--------------------------------T-----------G--------------------------------------------------------------T--------------------------------T----------------------------------------T----------------------------TCTC----------------------------G---------------------------------------------------------------------------------------------------------C----------C-C-AA-----------------------C------T---------G----------------G----C----TT----------C-G-------------T-----------------------A------C--------------------------------------------C------T----G---------------------CA---A-----A----G-CCA-------------------------------------------------------------------------------------------------T------------------ 'Fusarium paranaense CML_1995' CTTTCACATTTGCGACGAACCAACACCCCTATTGGACGAGATGGAAAGCTCGCCAAGCCCCGTCAGCTACACAACACC--------------------A-----------T-----------------------------------C--------------------------------C-----------------------------------------C-----------------------------------------------------------------C--------------------------------------T------------C-----------C-------T--------------------------------------------------------------------------------------C--------------C--------------------------T--G--------------------------------T-----------G--------------------------------------------------------------T--------------------------------T----------------------------------------T----------------------------TCTC----------------------------G---------------------------------------C-----------------------------------------------------------------C----------C-C-A--------C---------------C------T---------G--------------G-G----C-----T----------C-G-------------T-----------------------A------C--------------------------------------------C------T----G---------------------CA---------A----G-CCA-------------------------------------------------------------------------------------------------T------------------ 'Fusarium paranaense CML_2009' CTTTCACATTTGCGACGAACCAACACCCCTATTGGACGAGATGGAAAGCTCGCCAAGCCCCGTCAGCTACACAACACC--------------------A-----------T-----------------------------------C--------------------------------C-----------------------------------------C-----------------------------------------------------------------C---------------------------------------T-----------C-----------C-------T--------------------------------------------------------------------------------------C--------------C--------------------------T--G--------------------------------T-----------G--------------------------------------------------------------T--------------------------------T----------------------------------------T----------------------------TCTC----------------------------G---------------------------------------------------------------------------------------------------------C----------C-C-A--------C---------------C------T---------G----------------G----C-----T----------C-G-------------T-----------------------A------C--------------------------------------------C------T----G---------------------CA---------A----G-CCA-------------------------------------------------------------------------------------------------T------------------ 'Fusarium paranaense CML_2022' CTTTCACATTTGCGACGAACCAACACCCCTATTGGACGAGATGGAAAGCTCGCCAAGCCCCGTCAGCTACACAACACC--------------------A-----------T-----------------------------------C--------------------------------C-----------------------------------------C-----------------------------------------------------------------C--------------------------------------T------------C-----------C-------T---------------------------??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????--------------------------------T----------------------------TCTC----------------------------G---------------------------------------------------------------------------------------------------------C----------C-C-A--------C---------------C------T-----T---G----------------G----C-----T----------C-G---------------T---------------------A------C--------------------------------------------C------T----G---------------------CA---A-----A----G-CCA---------------------------------------------------------------------------------------{ACG}--?{AG}{AG}--G---------T-----T---- 'Fusarium paranaense CML_526' CTTTCACATTTGCGACGAACCAACACCCCTATTGGACGAGATGGAAAGCTCGCCAAGCCCCGTCAGCTACACAACACC--------------------A-----------T-----------------------------------C--------------------------------C-----------------------------------------C-----------------------------------------------------------------C--------------------------------------T------------C-----------C-------T--------------------------------------------------------------------------------------C--------------C--------------------------T--G--------------------------------TT----------G--------------------C-----------------------------------------T-------------GC-----------------T----------------------------------------T----------------------------TCTC----------------------------G---------------------------------------------------------------------------------------------------------C----------C-C-A--------C---------------C------T-----T---G----------------G----C-----T----------C-G-------------T-----------------------A------C--------------------------------------------C------T----G---------------------CA---A-----A----G-CCA-------------------------------------------------------------------------------------------------T------------------ 'Fusarium paranaense CML_860' CTTTCACATTTGCGACGAACCAACACCCCTATTGGACGAGATGGAAAGCTCGCCAAGCCCCGTCAGCTACACAACACC--------------------A-----------T-----------------------------------C--------------------------------C-----------------------------------------C-----------------------------------------------------------------C--------------------------------------T------------C-----------C-------T--------------------------------------------------------------------------------------C--------------C--------------------------T--G--------------------------------T-----------G--------------------------------------------------------------T--------------------------------T----------------------------------------T----------------------------TCTC----------------------------G---------------------------------------------------------------------------------------------------------C----------C-C-A--------C---------------C------T---------G----------------G----C-----T----------C-G-------------T-----------------------A------C--------------------------------------------C------T----G---------------------CA---A-----A----G-CCA-------------------------------------------------------------------------------------------------T------------------ 'Fusarium petroliphulum NRRL_32856' CTTTCGCATTTGCGACGAACCAACACCCCTATTGGACGAGATGGAAAGCTCGCCAAGCCCCGTCAGCTACACAACACC--------------------A--------A--------------------------------------C--------T-----------------------C-----------------------------------------C-----------------------------------------------------C-----T-----C-----C-----G---------------------------------------C-----------C----A--T-----------------------------------------------------------------------------------------------------C--------------C-----------T--G---------------A-C--------------T-----------G---------------------CA---------------------------------------------------------------A--------T----------------------------------------T----T---------------A-----T-TCTC----------------------------G-------------------------------------------------------------------------------------------A--T----------C----------C-C----------C----------------C---------------G----------------G----C------------------G-------------T-----------------------A------C--------------------------------------------C------T----G---------------------CA------A-----TCG-TCA------------------------------------------------------------------------------------------------T-----T------------- 'Fusarium phaseoli NRRL_22276' CTTTCACATTTGCGACGAACCAACACCCCTATCGGACGAGATGGAAAGCTCGCCAAGCCCCGTCAGCTACACAACACC--------------G--C--A-----------------------------------------------------------T--T--------T--------------------C--------------------------G--C--A-----------A--------------------C-----------------C-----------C-----C-----G--------------------T--A-----------G---C----------TC----------------A--C-----------------C-----------------T--------C--------------A--A-----------------------C--C--T--C-----------------------G-----------------C---------A-C--------------G-----------------------------------------------------T--T--T--------------------A---------T------------------------CC---C----G----C-----T-----------------------C-AGGACTC----------C-T----G------C---G----------ATC---------------------------------------------------------------------------------------G----C-----------CC----------C---------------C------TC--------G-------CCC------G--------------------CG-G----C----------T--------------------------C-A-----C--------------------------------------C------T----G--------G---------C-GCG-----A---A-----CTCA------------------------C------------------------------------------------------------------------------------------- 'Fusarium plagianthi NRRL_22632' CTGTCGCATTTGCGACGAACCAACACCCCTATCGGACGAGATGGAAAGCTCGCCAAACCCCGTCAGCTTCACAACACC--------------------A--------A--T--------------------------A--------C--------------------------------C------T----C--------------------------G--C-----G--A-----------A--------------------------------C-----------C-----C--T--G--T-----------------T------T----T--C--GC----------T-------T------A-----------A-----------C-----A-----------------------------------A-----------------------------C--T--C--------------------T--G--------G--A--------------------T-----------G--------------------C-----------------A-----------G--T-----T--------------------A-----A---T------------------------TC-----TGC-----------T-------A------G----------AG--CAC---------T--T---------T---G-G------------C------------------T----------------------------------------------------------------------C--C---------A-CC-------TCTCC-CAAGTCACAAAAA-TTTTGCGGT------C---------------C------AT----T---G------TCCC------G---------------------C-G-T-------------T------------T---------G-----A-------------------------------------A---T--C------T----G--------G---T-----C-GCAG--------A-T----TGA-T-------------C-------------------------------------------------------------------- 'Fusarium solani batatas NRRL_22400' CTCTCGCATTTGCGACGAACCAACACCCCTATTGGACGAGATGGAAAGCTCGCCAAGCCCCGTCAGCTACACAACACC--------------------A-----------T--------------------------------------------T-----------T-----------------C-----------------------------------C-----------------------------------------------------------------------C-----G---------------------------T----------GC----------------A-----------A-----------------------------------------T--------------------------------------------------C--------------------------T--G--------------------------------T-----------G--------------T--------------------------------------------------------------C-----------------T----------------------------------------T----------------------------TCTC----------C-------T---T-----G-----------T-------------------T-------------------------------------------------------------------------C----------C-C----------C---------------C------T---------G----------------G----C-----T----------C-G-------------T------------C----------A------C-------------------------------------------------------------------------------------------------------------------C------T----G---------------------CA---------A--T-G-TCA--------------------------------------------- 'Fusarium solani cucurbitae NRRL_22098' CTTTCGCATTTGCGACGAACCAACACCCCCATTGGACGAGATGGAAAGCTCGCCAAGCCCCGTCAGCTACACAACACC--------------------A-----------------------------------------------C-----------------------T--------------------C-----------------G--------------------------A-----------------------------------------------------C------------------------------------------------C-------------------------------------C--------------C--------------------------------------------------------------------C--------------------------T--G--C-----------------------------------------G-----------------------------------------------------------------------------------------------T-------------------------C--------------T----------------------------TCTT--------GG--T------C--------G--A------------------------------------------------------------------------------------------------------C--------C-C-C----------C-------C-------C----------------G-----G----------G----------T----------C-G---------------T--------------------------------------------------------------------------------T----G---------------------CATA---A---A----G-TCA-------------------------------------------------------------------------------------------------------------------- 'Fusarium solani mori NRRL_22230' CTTTCGCATTTGCGACGAACCAACACCCCTATTGGACGAGATGGAAAGCTCGCCAAGCCCCGTCAGCTACACAACACC--------------T-----A--------A--------------------------------------C--------T--------------------T--------------C-----------------------------C--------------A--T-----------C--------------T--C-----C--------------C--C-----G-----------------------------------G---C-----------C-------T--------------------------------------------------T-----------------------A-----C--------------------C--------------------------T------T----------------------------T-----------G-----------------------------------------------------------------------T--C--------------------T--------------------G-------------------T--------------------------T-TCTC----------C-----------T-----G-------C--------------------------------------------------------------------------------A-------T--------C---A----C-C-C----------C----------------C---------------G----------------G-----------------------G-------------T-T---------------------A------C--------------------------------------------C---A-AT-C--G---------------------CA------A-----T-G-TCA------------------------------------------------------------------------------------------------T-----T------------- 'Fusarium solani piperis CML_2186' CTTTCACATTTGCGACGACCAAACACCCCTATGGGACGAGATGGAAAGCTCGCCAAGCCCCGTCAGCTACACAACACCCATTGGGGTCTGGTCTGTCCGGCCGAGACGCCCGAGGGTCAGGCTTGTGGTCTGGTCAAGAACTTGTCTCTGATGTGC--------------TC-----------------------------------------------C-------A------TACGTCAGTGTCGGCTCTCCCTCTGAACCTCTGATTGAGTTCATGATCAACCGAGGTATGGAAGTTGTGGAAGAGTAC-------------------------------------------------G----------------------------GAGCCCCTGAGATACCCGCATGCTACCAAGATCTTTGTCAATGGTGTCTGGTGTGGTGTTCACTCAGACCCCAAGCAT------------------------------------------------------------------------------CTCGTCAGCCAGGTCCTGGACACACGAAGAAAGTCGTACTTGCAGTACGAGGTGTCGCTTGTTCGTGACATTCGAGAT------------------------------------------------------------------------------CGAGAGTTCAAGGTCTTCTCCGACGCTGGCCGAGTCATGAGGCCGGTCTTTACGGTTCAGCAGGAGGATGATCACGAG------------------------------------------------------------------------------TCTGGTATTGCCAAGGGAGCCTTAGTTCTGACCAAGGACCTTGTCAACAAGCTTGCCAAGGAGCAGGCTGAGCCACCA------------------------------------------------------------------------------GAGGACCCATCAATGAAGATTGGATGGGAGGGTCTGATCCGAGCCGGAACCATCGAGTACCTCGATGCTGAGGAAGAG------------------------------------------------------------------------------GAGACGGCCATGATTTGACCGTAAGTCAA 'Fusarium solani piperis CML_2187' CTTTCACATTTGCGACGAACCAACACCCCTATTGGACGAGATGGAAAGCTCGCCAAGCCCCGTCAGCTACACAACACC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Fusarium solani piperis NRRL_22570' CTTTCGCATTTGCGACGAACCAACACCCCTATTGGACGAGATGGAAAGCTCGCCAAGCCCCGTCAGCTACACAACACC--------------------A-----------------------------------------------------------T-----------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------CTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Fusarium solani pisi NRRL_22820' -{ACG}--?{AG}{AG}--GTGCGAGGAACCAACACCCCTATTGGACGAGATGGAAAGCTCGCCAAGCCCTGTCAGCTACACAACACC-----------{ACG}--?{AG}{AG}--G--------C-----------A--------A--------------------------------------C----------{ACG}--?{AG}{AG}--G--------------T--------C--G--------------------------------------C-----G-------{ACG}--?{AG}{AG}--G-----------------A-----C-----------------------------------C-----G-----T-------{ACG}--?{AG}{AG}--G--------------T------------C-----------C-------T-------------------------------{ACG}--?{AG}{AG}--G--------------------------------------------------------C--------------C-------{ACG}--?{AG}{AG}--G--------C-----------T--G--------------------------------T-----------G----------{ACG}--?{AG}{AG}--G--------------------------------------------------T----------------------------{ACG}--?{AG}{AG}--G--------T--------------------G-------------------T--------------------------T--{ACG}--?{AG}{AG}--GTCTC----------C-----------------G----------------------------------------------{ACG}--?{AG}{AG}--G-----------------------------------------C------------------C--------C-C-C-----{ACG}--?{AG}{AG}--G------C----------------C---------------G----------------G----C-----------------{ACG}--?{AG}{AG}--G--G-------------T-----------------------A------C-------------------------------{ACG}--?{AG}{AG}--G--------------C------T----G------------------ 'Fusarium solani robiniae NRRL_22161' CTTTCGCATTTGCGACGAACCAATACCCCCATTGGACGAGATGGAAAGCTCGCCAAACCCCGTCAGCTACACAACACC--------------T-----A--T---------------------------------------C-------------------------------------C------T----C-----------------------------C-----------------------G--T--C--------------T--C-----C---------------------------------------------------------------C-----------C-------T--------C------------------------------C----T--------------------------------------------------------C--------------------------T--G--------------------------------T-----------G-----------------------------------------------------------------------------------------------T--------------------G-------------------T----------------------------TCTC----------C-----------------G----------------------------------------------------------------------------------------T----------------C----------C-C----------C----------------C---------------G----------------G----C------------------G-------------T-----------------------A------C--------------------------------------------C------T----G---------------------CA------A-----T-G-TCA------------------------------------------------------------------------------------------------T-----T------------- 'Fusarium solani xanthoxlyli NRRL_22163' CTTTCGCATTTGCGACGAACCAACACCCCTATTGGACGAGATGGAAAGCTCGCCAAGCCCCGTCAGCTACACAACACC--------CT----------A-----------T-----------------C-----------------C--A-----------------------------C-----------C-----------------------------C--------------A--------------------------------------------------------------------T---------------------------------C----------------------------A--------------------------------------------------------------A-----------------------------C--------------------------T--G--------------------------------------------G-----------------------------------------------------------------------------------------------G----------------------------------------T----------------------------TCTC----------A--T----T-----C---G------------A--------------------------------------------------------------------------------------------C----------C-CG---------C--------------TC--T-------------G----------------G----C----------------C-G---------------T---------------------A------C----------G---------------------------------C------T----G---------------------TAG--------A----G-CCA-------------------------------------------------------------------------------------------------------------------- 'Fusarium striatum NRRL_20101' CTTTCGCATTTGCGACGAACCAACACCCCTATCGGACGAGATGGAAAGCTTGCCAAGCCCCGCCAGCTACACAACACC--------------------A-----------T-----------------------------------C--------------------------------C-----------------------------------------C-----------------T---------------------------------------------------------------------------------------------------C-------A---C-------T--------A--------------------------------------------------------------------------------------------C--------------------------T--G--------------------------------T-----------G--------------------------------------------------------------T--------------C---------?????????????????--------------------------------T----------------------------TCTC----------------------------G-----------T-------------------T-------------------------------------------------------------------------C----------C-C--------------------------C------T---------G----------------G----C----------------C-G-------------T-----------------------A------C--------------------------------------------C------T----G-----------------C---C----------A----G-TTA-------------------------------------------------------------------------------------------------------------------- 'Fusarium tucumaniae CML_2448' CTTTCACATTTGCGACGAACCAACACCCCTATCGGACGAGATGGAAAGCTCGCCAAGCCCCGTCAGCTACACAACACC--------------G--C--A-----------------------------------------------------------T--T--------T--------------------C--------------------------G--C--A-----------A--------------------C-----------------C-----------C-----C-----G--------------------T--A-----------G---C----------TC----------------A--C-----------------C-----------------T--------C--------------A--A-----------------------C--C--T--C-----------------------G-----------------C---------A-C--------------G-----------------------------------------------------T--T--T--------------------A---------T------------------------CC---C----G----C-----T-----------------------C-AGT-CTC----------C-T----G------C---G----------ATC---------------------------------------------------------------------------------------G----C-----------CC------------------------------------------C---------------C------TC--------G-------CCC------G--------------------C-T-GGTGGGGCATTT-ACCCCGCCGCTCGGGTGACGTTGGACAAAGCCCTGATCCCTGCACAG-G----C----------T--------------------------C-A-----C--------------------------------------T------T----G--------G---------C-GCG-----A---A-----CTCA---------------------- 'Fusarium tucumaniae NRRL_31096' CTTTCACATTTGCGACGAACCAACACCCCTATCGGACGAGATGGAAAGCTCGCCAAGCCCCGTCAGCTACACAACACC--------------G--C--A-----------------------------------------------------------T--T--------T--------------------C--------------------------G--C--A-----------A--------------------C-----------------C-----------C-----C-----G--------------------T--A-----------G---C----------TC----------------A--C-----------------C-----------------T--------C--------------A--A-----------------------C--C--T--C-----------------------G-----------------C---------A-C--------------G-----------------------------------------------------T--T--T--------------------A---------T------------------------CC---C----G----C-----T-----------------------C-AGT-CTC----------C-T----G------C---G----------ATC---------------------------------------------------------------------------------------G----C-----------CC----------C---------------C------TC--------G-------CCC------G--------------------CG-G----C----------T--------------------------C-A-----C--------------------------------------C------T----G--------G---------C-GCG-----A---A-----CTCA------------------------C--------------------------------------------------------------{ACG}--?{AG}{AG}--G-------------------- 'Fusarium virguliforme NRRL_34551' CTTTCACATTTGCGACGAACCAACACCCCTATCGGACGAGATGGAAAGCTCGCCAAGCCCCGTCAGCTACACAACACC--------------G--C--A-----------------------------------------------------------T--T--------T--------------------C--------------------------G--C--A-----------A--------------------C-----------------C-----------C-----C-----G--------------------T--A-----------G---C----------TC----------------A--C-----------------C-----------------T--------C--------------A--A-----------------------C--C--T--C-----------------------G-----------------C---------A-C--------------G-----------------------------------------------------T--T--T--------------------A---------T-----------------------GCC---C----G----C-----T-------------------------AGT-CTC----------C-T----G------C---G----------ATC---------------------------------------------------------------------------------------G----C-----------CC----------C---------------C------TC--------G-------CCC------G--------------------C--------------------------------------------------------------G-G----C-------------------------------------C-A----------------------------------CACGAAACCC-CTTGACGCGCATCATCACGTGGTTCAACACAGACGCTGACCGAT---ACAATAGGA--------------C------T----G--------G---------C-GCG-- ; END; BEGIN TREES; TITLE Fusarium_red_root_rot_on_soybean_in_Brazil; LINK TAXA = Taxa1; TRANSLATE 1 'Fusarium solani piperis CML_2187', 2 'Fusarium solani piperis CML_2186', 3 'Fusarium brasiliense NRRL_22743', 4 'Fusarium crassistipitatum NRRL_31949', 5 'Fusarium cuneirostrum NRRL_31104', 6 'Fusarium illudens NRRL_22090', 7 'Fusarium keratoplasticum FRC_S.2477', 8 'Fusarium phaseoli NRRL_22276', 9 'Fusarium plagianthi NRRL_22632', 10 'Fusarium striatum NRRL_20101', 11 'Fusarium tucumaniae CML_2448', 12 'Fusarium tucumaniae NRRL_31096', 13 'Fusarium virguliforme NRRL_34551', 14 'Fusarium lichenicola NRRL_28030', 15 'Fusarium solani batatas NRRL_22400', 16 'Fusarium solani cucurbitae NRRL_22098', 17 'Fusarium petroliphulum NRRL_32856', 18 'Fusarium solani mori NRRL_22230', 19 'Fusarium solani piperis NRRL_22570', 20 'Fusarium solani pisi NRRL_22820', 21 'Fusarium solani robiniae NRRL_22161', 22 'Fusarium solani xanthoxlyli NRRL_22163', 23 'Fusarium paranaense CML_1993', 24 'Fusarium paranaense CML_1995', 25 'Fusarium paranaense CML_1988', 26 'Fusarium paranaense CML_2022', 27 'Fusarium paranaense CML_526', 28 'Fusarium paranaense CML_2009', 29 'Fusarium paranaense CML_1771', 30 'Fusarium paranaense CML_860', 31 'Fusarium paranaense CML_1830', 32 'Fusarium paranaense CML_1833', 33 'Fusarium falciforme NRRL_32721', 34 'Fusarium falciforme NRRL_43503'; TREE PAUP_1 = [&R] (2:42.47565,(1:7.62034E-8,(19:0.0,(20:9.584322,((7:1.340032,22:0.0):1.12149E-7,(((14:0.128498,(16:0.039912,21:0.064264):0.037516):0.0,((17:0.0,18:0.0):0.012349,(15:0.023725,(10:0.095774,(6:0.027968,9:0.153865):0.57603):0.00115):5.24269E-8):0.0):0.026511,((3:0.646613,26:0.0):5.2894E-8,(24:0.0,(32:0.0,((28:0.0,(29:0.0,(33:0.0,(23:0.0,34:0.0):0.0):0.001423):0.00473):0.013574,(25:0.0,(31:0.0,(30:0.0,(27:0.0,(5:0.373184,(13:0.136018,(11:0.255783,(12:0.0,(4:0.0,8:0.0):0.013763):0.0):1.86095E-7):0.203959):0.659654):0.0):0.0):4.12177E-8):6.33031E-8):0.0):0.0):6.43135E-8):0.042346):0.124264):2.4238E-5):4.38494E-6):0.144982):42.47565); END;