#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 20, 2024; 2:14 GMT TreeBASE (cc) 1994-2008 Study reference: Graham S., Freudenstein J., & Luker M. 2006. A phylogenetic study of Cuphea (Lythraceae) based on morphology and nuclear rDNA. Systematic Botany, 31. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1590] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=57; TAXLABELS Cuphea_acinifolia Cuphea_angustifolia Cuphea_appendiculata Cuphea_axilliflora Cuphea_bahiensis Cuphea_brachypoda Cuphea_calophylla Cuphea_carthagenensis Cuphea_circaeoides Cuphea_cyanea Cuphea_decandra Cuphea_denticulata Cuphea_disperma Cuphea_epilobiifolia Cuphea_ericoides Cuphea_flava Cuphea_flavisetula Cuphea_fuchsiifolia Cuphea_gaumeri Cuphea_glutinosa Cuphea_heterophylla Cuphea_ignea Cuphea_ingrata Cuphea_llavea Cuphea_lutescens Cuphea_melanium Cuphea_melvilla Cuphea_micropetala Cuphea_mimuloides Cuphea_nitidula Cuphea_parsonsia Cuphea_pascuorum Cuphea_procumbens Cuphea_pseudosilene Cuphea_pseudovaccinium Cuphea_pulchra Cuphea_racemosa Cuphea_repens Cuphea_salvadorensis Cuphea_schumannii Cuphea_sessiliflora Cuphea_sessilifolia Cuphea_spectabilis Cuphea_spermacoce Cuphea_splendida Cuphea_strigulosa Cuphea_subuligera Cuphea_teleandra Cuphea_thymoides Cuphea_urens Cuphea_utriculosa Cuphea_watsoniana Cuphea_wrightii Lythrum_lineare Pehria_compacta Pleurophora_saccocarpa Woodfordia_fruticosa ; END; BEGIN TAXA; TITLE Taxa2; DIMENSIONS NTAX=57; TAXLABELS Cuphea_acinifolia Cuphea_angustifolia Cuphea_appendiculata Cuphea_axilliflora Cuphea_bahiensis Cuphea_brachypoda Cuphea_calophylla Cuphea_carthagenensis Cuphea_circaeoides Cuphea_cyanea Cuphea_decandra Cuphea_denticulata Cuphea_disperma Cuphea_epilobiifolia Cuphea_ericoides Cuphea_flava Cuphea_flavisetula Cuphea_fuchsiifolia Cuphea_gaumeri Cuphea_glutinosa Cuphea_heterophylla Cuphea_ignea Cuphea_ingrata Cuphea_llavea Cuphea_lutescens Cuphea_melanium Cuphea_melvilla Cuphea_micropetala Cuphea_mimuloides Cuphea_nitidula Cuphea_parsonsia Cuphea_pascuorum Cuphea_procumbens Cuphea_pseudosilene Cuphea_pseudovaccinium Cuphea_pulchra Cuphea_racemosa Cuphea_repens Cuphea_salvadorensis Cuphea_schumannii Cuphea_sessiliflora Cuphea_sessilifolia Cuphea_spectabilis Cuphea_spermacoce Cuphea_splendida Cuphea_strigulosa Cuphea_subuligera Cuphea_teleandra Cuphea_thymoides Cuphea_urens Cuphea_utriculosa Cuphea_watsoniana Cuphea_wrightii Lythrum_lineare Pehria_compacta Pleurophora_saccocarpa Woodfordia_fruticosa ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1264] TITLE Cuphea; LINK TAXA = Taxa1; DIMENSIONS NCHAR=46; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3 4 5" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 ] [ . . . . . . ] Cuphea_acinifolia 0111101010000001001000001110001001111110111221 Cuphea_angustifolia 0010001011010001011100001110000101201100101321 Cuphea_appendiculata 0011011011020001102001012110000101211111101221 Cuphea_axilliflora 0011011011020001102001012110000101211111101221 Cuphea_bahiensis 0112100110010001001000001110000001011111101?22 Cuphea_brachypoda 0111101011000001001000001110000000001111101?21 Cuphea_calophylla 01{01}{12}00{01}01000000000100000111{01}110000001110101221 Cuphea_carthagenensis 0101101010000001001000001111110101211111111221 Cuphea_circaeoides 11000001{01}10000110{01}1000101111110000101110111?21 Cuphea_cyanea 0002000011020101101101102110000001101111101421 Cuphea_decandra 0110100000{01}10000001000001110000000111110101021 Cuphea_denticulata 0110100001100000001000001111000000111110101021 Cuphea_disperma 0110101010000001001000001110000000001110101221 Cuphea_epilobiifolia 00100101{01}0000001102000001110000000011110101121 Cuphea_ericoides 01101010100{01}0001102000001110000011011111101?22 Cuphea_flava 01121000?0000101001000021110000011011111101?22 Cuphea_flavisetula 0110100001110000001000001110010000111110101?11 Cuphea_fuchsiifolia 0002001011010001001010001110001001111111101?21 Cuphea_gaumeri 0111101011100001001000001110000000111110101?11 Cuphea_glutinosa 0111101010000001101000001110001001111110111221 Cuphea_heterophylla 0001000011010111101001012110000001211111101221 Cuphea_ignea 0100101011020111102022132110000001211111101321 Cuphea_ingrata 0110101010010001001000001110011001111111101221 Cuphea_llavea 0110001010020001012001012110000101201111101321 Cuphea_lutescens 0002001011010001002010001110001001011111101221 Cuphea_melanium 0112101010000000001000001110110000001110101221 Cuphea_melvilla 0000010111021111{01}02022132110000001111100101221 Cuphea_micropetala 0000000011021111{01}02000102110000001111100101{13}21 Cuphea_mimuloides 1110101001100000000000001111110000001100101011 Cuphea_nitidula 0001001011020001002101002110000101111111101321 Cuphea_parsonsia 011110101000000000100000112?110101211111111221 Cuphea_pascuorum 11121010{01}1100000001000001110000000001100101?11 Cuphea_procumbens 010100101110000101{12}000001110000101211111101321 Cuphea_pseudosilene 0110111011000000001000001101110101211111111?21 Cuphea_pseudovaccinium 0012101010000001001000001110001001111111101221 Cuphea_pulchra 0012000111010111101002132110000110001111101?21 Cuphea_racemosa 010100101110{01}0000{01}1000001111000000111100111021 Cuphea_repens 0110111011000001001000001110110001001110101?21 Cuphea_salvadorensis 0000001011021111002001012110000001101111101121 Cuphea_schumannii 0000001011021111102001002110000001101111101321 Cuphea_sessiliflora 0101101010000001001010001110011001011111101?21 Cuphea_sessilifolia 0111101010000001001000010110000011011111101122 Cuphea_spectabilis 00110000110211011{01}1101012110000101211111101521 Cuphea_spermacoce 01110010{12}1010001001000001110000101111111101?21 Cuphea_splendida 0100010111021111002002132110000001111100101?21 Cuphea_strigulosa 0110101010000001001000001110000101211111111121 Cuphea_subuligera 0000000011020{01}1110200{02}{01}{01}2110000101211111101221 Cuphea_teleandra 0010101010010111{01}01000011110001001111111101?21 Cuphea_thymoides 0111101010000000010100001110001001111111101211 Cuphea_urens 0112101011000001001000001110110000001110101211 Cuphea_utriculosa 0110101001100000001000001011100000001100101001 Cuphea_watsoniana 0000001011020111{01}0200{02}{01}02110000001101111101?11 Cuphea_wrightii 1101000010000001011001001110000101211111101211 Lythrum_lineare 001100{01}0{01}000000000200000000{01}{01}{01}0000110000000010 Pehria_compacta 0001001020000000001000000001000000010000101000 Pleurophora_saccocarpa 00100010100000000020000000110000000110{01}0101010 Woodfordia_fruticosa 0012001021010100101000110000000000010000101000 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1265] TITLE ITS; LINK TAXA = Taxa2; DIMENSIONS NCHAR=803; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Cuphea_acinifolia ------------------------------------CAGAACGACCA-GAGAA-CTCGTAAACAAGAAAATT--GTCGTTGGG---CTT-----CCACC-G-ACA---AAAAGCCATC--GGTT-G-CGGCGG---TGCATGTC-GCTGT-CGTGATCGTTT-GG--TCGT-ACC---AAAAA--CCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACAAAT-AGACGGA--GCACAAGCC-T-CCCCGTCG---TCTCCATTC----GG-----CGACGACGG----ATGGCT-CGGTGA---TCCT--CGAAT------ATTTAAAACGAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGTCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACATCGCCCC--------AAAAAA-A-TCCTACCA---CGG-AT---CTAC-------GGGAGC-GGAAGATGGTCTCC-CGTGGCGC-ATC-GCTGCGGTTGGCCTAAAAAA--GAGCACGGGAGCGGCGTAA-TCCGCGACGCACGGT-GGTGG-TAATTATTTCCCTC-CTCGGGCATC-AGTCCGGAGCGACCT-CC-AT-CGAGCTGCTCGA-CGGCC--TTCCATTCCACGAACGCGACCCCA-GGTCA------------------------------------ Cuphea_angustifolia --------------------------------------GAACGACCA-GAGAA-CTAGTTAACAAGTATTTT--GTCGGGG-----ATTC-----AATC-CCACA--AAAAAGCCATC--GAT--GACGGCAA-C--GCCTGCC-GCTGC-CGTAATCAT---GGC--CGT-ACT---AAAAACACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAT-TACAAAGCGA--GGA--CCCCCGGCC-T--CT--TGCC-GTACCCGTCT----GGG-------CTACGACG-ATTGGCT-CGGGAT---TCCT--CAAAT------ATTT-AAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACCTCGCCCC--------AAAA-----GCACCCAATTGCGG--T---GTAC-------GGGAGC-GGAACATGGTCTCC-CGTGGCGGAAT--GCTGCGGTTGGCCTAAATAT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATATTTT-CCCC-CTCGGGCACC-AGTCCGGAGCGGCCT-CCCAT-GGATTTGCT-GA-CGGCC--TTCTACTTAACAAACGCGACCCCA------------------------------------------ Cuphea_appendiculata ---------------------CGAATC-TG-AC-AGCAGAACGACCA-GAGAA-CTAGTTAACAAGTATTTT--CTCGGGGG---ACTT-----CCCTC-G-ATA--AAAAAGCCATC--GGTT--ACGGCAG---CGATTGCC-GCTGT-TGTGATCGT---GG--TTGT-ACT---AAAAACACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TATAAAG-TGA-GGA--CCACCGGCC-T-CTCGTCG----TACTCGTCT----GGG----CTACGATGA----TTGGCT-CGGGCA---TCCT--CGAAT------ATTTTAAACAAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCC-ACGC-ATTCGGCTGAGGGCACGTCTGCCTGGGTGT-CACGGATCACCTCGGCCC--------AAAA---TTACCCATTTG--CGG--T---ATAA-------GGGAGC-GGAACATGGTCTCC-CGTGGCGCAAT--GCTGCGGTTGGCCTAAAAAT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATATTTT-CCCC-CTCGG-CACC-AGTCC-GAGCG-CCT-CC-ATG-ATCTT-CTCGA-CGGGC--TTCCACTCAACAAACGCGACCC-A-GGTCAA--GCGGGG--------------------------- Cuphea_axilliflora TGCGGAA-GGACATTGTCGAATCCTGCACAA----GCAGAACGACCA-GAGAA--TAGTTAACAAGTATTTT--GTCGGGGG---ACTT-----CCCTC-G-ATA--AAAAAGCCATC--GGTT--ACGGCAG---CGATTGCC-GCTGT-TGTGATCGT---GG--TTGT-ACT---AAAAACACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TATAAAG-TGA-GGA--CCACCGGCC-T----CTCGTCGTACTCGTCT-----GGGC-TACGATGATTGG-------CT-CGGGCA---TCCT--CGA-AT-----ATTTTAAACAAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCTGAAGGCACGTCTGCCTGGGTGT-CACGCATCACCTCGCCCC--------AAAA---TTACCCATTTG--CGG--T---ATAA-------GGGAGC-GGAACATGGTCTCC-CGTGGCGCAAT--GCTGCGGTTGGCCTAAAAAT--GAGCACGGGAGCGGCGTA-TTCCGCGAC-CACGGT-GGTGG-TAATATTTTCCCCC--TCGGGCACC-AGTCCGGAACGGCCT-CCCATG-ATCT-GCTCGA-CGGCC--TTCCACTCAACAAACGCGACCCCA-GGTCA--GGCGGGGCTACCCGCTG-ATTTAAG--------- Cuphea_bahiensis ---------------------------------AAGCAGAACGACCA-GAGAA-CTAGTTAACAAGGATTT---GGCGGGGG---AATT-----CCCTC-G-GCA--AAAAAGCCGTC--GA-C-GATGGCGA---CGCTCGTC-GTTGC-CTTCGTCAC---GGC--CGT-ACT---AAAAACACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAT-TACAAAT-AGA-GGA--CGACCGGCCTC-CCCGACG{CGT}----CCCCCTTTC---GGG----GGACGACGACGG-ACGGCT-CGGCTGA--ACCT--CGAATA-----TTTTTAAATCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGGCATTCGGCTGAGGGCACGTCTGCCTGGGTGT-CACGGAACACATCCGACG--------CAAAAAA-TCCCGACCAGA-CGGGGTAAAATAC-------GGGAGC-GGAAGATGGTCTCC-CGTGGCGCAAT--GCTGCGGCTGGCCTAAAAAT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATTCTTCCCCCC-CTCGGGCATC-AGTCCGGAGCGGCCT-CCCATCA-TTATGCTCGA-CGGCC--TTCCACTAAACCAACGCGACCCCA------------------------------------------ Cuphea_brachypoda --------------------------------------GAACGACCA-GAGAA-CTCAGTAACAAGTAAA-CT-GTCGGTGGG---CTT----CCACC--G-GCA---AAAAGCCATC--GGTT-GCCGGCGG---TGCATGCC-GCTGT-CGTGACCGTTT-GGC--CGT-ACC---AAAAA--CCCGG--CGC---GGAAGGCGCCAGGGAA------CAAG-TACAAATAGGG-GGA--GCACAAGCC-T-CCC--CGTC-GTCTCCATTC------------GCCGTCGACGG-ATGGCT-CGGTGA---CCCT--CGAAT------ATTTAAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGACCGTTGCGAAATGCCATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGGATCACATCGCCCT--------CAAAAAAAATCCTACCA---CGGGC----ATAC------GGGGAGC-GGAAGATGGTCTCC-CGTGGCTTA-TC-GCTGCGGTTGGCCTAAAAAA--GAGCACGGGAGCCGCGTGA-TCCGCGACGCACGGT-GGTGG-TAATTATTTCCCTC-CTCGGGCATC-AGTCCGGAGCGACCT-CCCAT-CGAGCTGCTCGA-CGGCC--TTCCATTCCACGAACGCGACCCCA------------------------------------------ Cuphea_calophylla ---------------------------------AAGCAGAACGGTCAC-AGAACC-AGTAACCAATGAGATG--ATGAGA{AC}{GT}{AT}{GT}-A{AC}C{AC}--?{CT}GGCCCC-A{AG}G{CG}A--AAA{AGT}{AC}GCCATATCAGTG-CACGGTGGG--CGCTTGAC-GCCCCTCGCCAAAGT---GGC--CGT-ACTAA-AAAAAACCCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACAAAT-AGA-GGA--GCACCAGCC-A-CTCGTTG----TCCTCCTTC----GGG----TGACGACGG----ATGGCT-CGGGCA---TCCT--CGAAT-------TATAAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGTCGAGGGCACGTCTGCCTGGGTGT-CACGCATAACATTGCCCC--------AAGAAA---TCCAACTAA--CGG-AT---CT{CGT}--------{CGT}{CGT}{CGT}{CGT}{CGT}{CGT}-{CGT}{CGT}{CGT}{ACG}GATGGTCTCC-CGTGGCGC-ATC-GCCG{CG}GGTTGGCCTAAATAT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TCATTCTTTCCCTC-CTCGGCTATC-TG{CGT}{CT}CGGAACGGCCT-CCCAT-GGAACTGCTCGA-T-GCC--TTCAGTTCA--CAACACGACCCC------------------------------------------- Cuphea_carthagenensis TGCGGAA-GGACATTGTCGAATCCTGCAAAA----GCAGAACGACCA-GAGAA-CTAGTTAACAAGGATTTT--GTCGGGGGG-AAATC-----CCCTC-G-ATAAAAAAAAGCCATC--GAT--GACGACAA---TGCTTGTC-GTTGC-CGTCATTGT---GGC--CGT-ACT---AAAA-CACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACATAT-AGAGGGA--CTACCAGCC-T-CTC---GTC-GTCCCTTTCT----GGG----AGACGACGTG----TGGCT-CGGGCC---TCCT--CGAAT------ATTTTAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATCTGGTCGAGGGCACGTCTGCCTGGGTGT-CACGCATCATGTCGCCCC--------AAAA-----TCCCGCTAG--CGG--TA--CTAT-------GGGAGC-GGAAGATGGTCTCC-CGTGGCGCAAT--GCTGCGGCTGGCCTAAAAATATGAGCACGGGAGCGGCGTATTTCCGCGACGCACGGT-GGTGGTAAATCTTCC-CCCC-CTCGGGCATC-AGTCCGGAGCGGCCT-CCCAT-CGATCTGCTCGA-CGGCC--TTTCATTCAACGAACGCGACCCCA-GGTCA--GGCGGGGCTACCCGCTGAGTTAAGCATATCAATA Cuphea_circaeoides ----------------TGCAAACCTGCC----AAAGCAGAACGACCA-GAGAA-CTAGTTAACAAGTATTT---GTCGAGGGGG-TAAC---TCCCCC--G-ACA--TAAAAGCCATT---ATT--ACGGGCA---CGCTCGTC-GCGTC-CGTGATTGT---GGC--CGT-ACG---AAAAAAACCCGG--CGC---GGAAGGCGCCAAGGAA------CATG-TACACAG-AGAGGG---GCACCGGCCCTTCAC---GGC-ATCCCCATTC----GGG----TGATGACGG----AAGGCT--GGCGCC--T-----CGAATGT-----TTTTAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACATCGCCCC--------AAAA-----TCCCACAAGT-CGGGG----ATGCT------GGGA-C-GGAAGTTGGCCTCC-CGTGGCACAT-C-GCTGCGGCTGGCCTAAAAAT--GAGCACGGGAGCGGCGCA-TTCCGCGACGCGCGGT-GGTGG-TAATTCTTCCCCCC--TCGGACAGC-AGTCCGGAGCGGCCT-CCCCT-CGATTTGCTCGA-CGGCC--TTCCAACAAACAAACGCGACCCCA------------------------------------------ Cuphea_cyanea -------------------------------ACAAGCAGAACGACCCAGAGA--CTAGTTAACAAGCATGTT--GATCAGGG---TCTC-----TCCTC-GTATAGC-AACAGTCATT--GAT--GACGGCA{AG}-CG-CTTTGTC-GCTGC-CGTGAATTTGATGCTCTGATCACT---AAACACACCCGGGACGC-CGGGAAG-CGCCAAGGAAA-----CAAGATACAAAGGCGTTGAAT-AAATCGACCCT--CT--CGTCGACACCCCGTCT---GGG------ATTACGA-GTGATGGGCTCGGTCA---T-CTT-CGAAT------AATTTAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACCTCGGCCC--------AAAAA---TACCCACTTGT--GG--T---GTAC-------GGGAGC-GGAACATGGTCTCC-CGTGGCGCAAT--GTCGCGGTTGGCCTAAAATT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATATTTC-CCCC-CTCGGGCACC-AGTCCG-AACGACCT-CCCAA-TAATTTGCTCGA-CGGCC--TTCCATTCAACAAATGCGACCCCA-GGTCAA-G-CGGGGTTACCC--------------------- Cuphea_decandra -------------------------------------AGAACGACCA-GAGAA-CTAGTTAACAAGTATTT---GTCGGGGG---AGTCA-CTCCCCCC-G-GCAG--AAAAGCCATC--GGT--GACGG-G--CGCGCTCGTC-GCGTC-TGTCACTGT---G-C--CGT-ACC---AAAAAAA-CCGG--CGC---GGAAGGCGCCAAGGAA------CATG-TACACTT-AGA-GGG--GCACCGGCC-TTCACGCC----ATGCCCGTTC----GGG----CGATGACGG----AAGGGCCCGGTCGTG-TCCT--CGAAT------GTTTTTAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATCCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACGTCGCCCC--------AACAAAA--TCCCACTCGT--GGG-----ATTC-------GGGAGC-GGATGTTGGCCTCC-CGTGGCGC-ATC-GCTGCGGCTGGCCTAAAAGT--GAGCACGGGAGCGGCGCA-TTCCGCGACGCGCGGT-GGTGG-TAATTCTT--CCCC-CTCGGGCACC-AGTCCGGAGCGGCCT-CCCAC-----ATGCTCGA-CGGCC--TTCCATCAAACGAACGCGACCCCA-GGTCAA-GCCGGG-CTACCCC-------------------- Cuphea_denticulata ---------AA-GGACATTGTCGAAACCTGCAAAAGCAGAACGACCA-GAGAA-CTAGTTAACAAGTAT--CT-GTCGGGGG----ATCA-CTCCCCTC-G-GCAG--AAAAGCCATC--GAT--GACGG-G--CGCGCTCGTC-GC-GT-CTTGATTGT---GG--TCGT-ACC---AAAAAAA-CCGG--CGC---GGAAGGTGCCAAGGAA------CATG-TACACTC-AGA-GGC--GCACCGGCCTT-CAC---GGC-ATGCC-GTTC----GGG----CAATAACGG----AAGGCT-CGGTCG---TCCT--CAAAT------GTTTTTAACCAAAA-CGACT-TCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACTTCGCCCC--------AACAAAAATT-CCACTCGT--GGG-----ATTC-------GGGAGC-GGATGTTGGCCTCC-CGTGGCGCAT-C-G-TGCGGCTGGCCTAAAAGT--GAGTACGGGAGCGGCGTA-TTCCGCGACGCGCGGT-GGTGG-TAATTATTTCCCCC-CTCGGGCACC-AGTCCGGAGCGGCCT-CCCAC-----ATGCTCGA-CGGCC--TTCCATCAAACGAACGCGACCCCA-GGTCA--GGCGGGCT-ACCCGCTGA-TTTAAGCA-TCA--- Cuphea_disperma -----------------------------------GCAGAACGACCAAGAGAACC-GGTAAACAACGATTT---GTCGCGGG---AATT------CACC-G-TCA--AAAAAGCC--C--GAT--GACGGCGGG--{ACT}ACCC-TC-CC-GT-C---ATCG----GGC--CGT-ACT---AAAATTTCCCCC--CGC---GGAAGGCGCCAAGGCA------CAAG-TACAAAA-CGA-GGA--CGACCAGCC-T-CC-GGACT---TCTCACTTC----GTG----CGACGACGG----ACGGCT-CGGTCAT--CC-TT--AGAC------AACTAATACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTCTACGCTATTCGGCCGAGGGAACGTCTGCCTGGTTGT--ACGCATTACCTCGCCCC--------GAAAAA-AAGTCCAAACAT--GG-A----GTAC-------GGGAGC-GAAAAATGGTCTCC-CGTGACGC-ATC-G-TGCGGCTGGCCTAAAAAT--GAGCACGGGAGCGGCGTTAATCCGCGACGCACGGT-GGTGG-TAA{ACT}TCTTTCCCT-ACTCGGGCATC-TGTCCGGAGCGGCCT-CCCATGCGAACTGCTCGA-CGGCC--TTGCATTCTACGAACGTGACCC-------------------------------------------- Cuphea_epilobiifolia -------------------------------------AGAACGACCA-GAGGACC-AGTTAACAA-----------------------------------AAACA---TA-GGC-GTC--GGTC--ATGGGCGG-GCGCTCGTC-GCCCC-CATGACCGCTC--GC--CGT-ACCT--AAAAA-CCCCGG--CGC---GGAAGGCGC-AAGGAA------CATG-TACAAAG-AGA-GGG--CTACCGGGCCT-CTGG-------------------------------------------GCT-CGGGAA---CCCT--CGAAT------GTTAATAACAAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCTGAGGGCACGTCTGCCTGGGTGT-CACGCATCACATCGCCCC--------AAAA-----TCCCACCGA---GG------ACAC-------GGGAGC-GGAAGATGGCCTCC-CGTAGCG-AAT-AGCCGCGGATGGCCTAAATAC--GAGCATGGGAGCGACGCA-TTCCGCGACGCACGGT-GGTGG-TAA--CTTTCCCCC-CTCGGGCATC-ACTCCCCATCGGCC--CCCC-GTTAGCTGCTCCA-CGGCC-TTTCAAACCAACGA-CCGGACCCCA-GGTCA--GGCGGGGCTACCCGGCGGTTTCAGCATTTCAATA Cuphea_ericoides -----------------------------------GCAGA-CGAC-A-GAGA--CTAGTTAACAAGGATTT---GGCGGGGG---AATT-----CCCTC-G-GCA--AAAAAGCCGTC--GAT--GATGGCGA-C--GCTCGTC-GTTGC-CTTCGTCAC---GGC--CGT-ACT---AAAAACACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAT-TACAAA-TAGAGGA---CGACCAGCCTT--CC--CGAC-GTCCCCCTTTC---GGG----AGACGACGGCGG-ACGGCT-CGGTTGAA--CCT--CGAATA-----TTTTTAAATCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATTGAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTTAACGCAAGTTTCGCCCG-ACGGCATTCGGCTTAGGGGACCTTTTCCTGGGTTT-TACGGAACACATTGGCCC--------AAAAAA--TCCCGCCAA---CGGGGTTAAATAC-------GGGAGCCGGAAGATGGTCTCC-CGTGGCGCAAT--GCTGCGGTTGGCCTAAAAAT--GAGCACGGGAGCGCCGTA-TTCCGCGACGCACGGT-GGTGG-TAATTCTTCCCCCC-CTCGGGCAT{CG}-AGTCCGGAGCGGCCT-CCCATCCATTATGCTCGA-CGGCC--TTCCATTAAACC-AGGCGACCCCA-GGTCA--GGGGGGGCT-CCC--------------------- Cuphea_flava -------------------------------------AGAACGACCA-GAGAA-CTAGTTA-CAAGGATTT---GGCGGGCG---AATT-----CCCTC-G-GCA--AAAAAGCCGTC--GAT--GACGGCGA---CGCTCGTC-GTTGC-CTTCGTCAC---GGC--CGT-ACT---AAAAACACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAT-TACAAAT--AGAGGA--CGACCGGCC-T-TCCCGACG---TCCCCCTTTC---GGGAGAACGACGGCGG----ACGGCT-CGGTTGA--ACCT--CGAATA-----TTTTTAAATCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCTGAGGGCACGTCTGCCTGGGTGT-CACGCAACACATCGCCCC--------AAAGAA---TCCCGCCAG--CGGGGTAAA-TAC-------GGGAGC-GGAAGATGGTCTCC-CGTGGCGCAAT--GCTGCGGCTGGCCTAAAAAT--GAGGACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATTCTTCCCCCC-CTCGGGCATC-AGTCCGGAGCGGCCT-CCCAT-CATTATGCTCGA-CGGCC--TTCCACTAAACCAACGCGACCC-A-GGTCAT-GC-GGGGCTACCG--------------------- Cuphea_flavisetula ------------------------------CAAAAGCAGAACGACCA-GAGAA-CTAGTTAACAAGTATTT---GTCGGGGG---AGTGA-CTCCCCCC-G-GCAG--AAAAGCCAAA-CGGT--AACGGGAG---CGCTCGTC-GCGCT-CTTGACTGT---GGC--CGT-ACC---AAAAAAA-CCGG--CGC---GGAAGGCGCCAAGGAA------CATG-TACA-CTTAGAGGG---GCACCAGCCTT-CACGCC----ATGCCCGTTC----GGG----CGATGACGG----ATGGGCCCGGTCGTCGTCCT--CGAAT------GTTTTTAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGCACGCAAGTTGCGCGCG-ACGCCATCCGGCAGAGGGCACGTCTGCCTGGGTGT-CACGCATCACGTCGCCCC--------AACAAAAA--CCAACC-GT--GGG-----ATTC-------GGGAGC-GGATGTTGGCCTCC-AGTGGCGC-ATC-GCTGCGGCTGGCCTAAAAGT--GAGCACGGGAGCGGCGCA-TTCCGCGACGCACGGT-GGTGG-TAATTCTT--CCCC-AACGGGCACC-AGTCCGGAGCGCCCT-CC-AAC----ATGCTCGA-CGTCC--TTCCATCAAACGAACGCGACCCAA------------------------------------------ Cuphea_fuchsiifolia ---------------------CGAAT-CTGCAAAAGCAGAACGACCA-GAGAA-CTCGTAAACAAGTAAATT--GCCGGTGG-----TCCG--CCCCC--G-ACA---AAATGCCATC--GATT-GA-GGCGG---CGCCCGTC-GTCGT-CTCGATCGTTT-GGC--CGT-ACC---AAAAAACCCCG---CGC---GGAAGGCGCCAAGGAA------CAAG-TACAAAT-GGA-GGA--GCACCAGCC-T-CCCGCCGTC-----TCCTAC----GGG----CGATGACGG----ATGGCT-CGGTAA---TCCT--CAAAT------ATTTAAAACCAAAA-CG{AG}CTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGTCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACATCGCCCC--------AAAAAAA--TCCAACTA---CGG-AT---CTAC-------GGGAGC-GGAAGATGGTCTCC-CGTGGCGC-ATC-GCTGCGGCTGGCCTAAAAAA--GAGCACGGGAGCGGCGT-TTTCCGCGACGCACGGT-GGTGG-TAATTCTTTCCCTC-CTCGGGCATC-AGTCCGGAGCGGCCT-CCCAT-CGAACTGCTCGA-CGGGC--TTCCATTCAACGAACGCGACCCC------------------------------------------- Cuphea_gaumeri -----------------------------------GCAGAACGAACA-GAGAA-CTAGTTAACAAGTATTT---GTCGGGG----AGTCA-CT-CCCTCCG-GCA-AAAAAAGCCATT--GAT--GATGG-A--TGCGCTCGTC-GCATC-CGTCATCGT---GG--------CCGA-AAAAAAACCCGG--CGC---GGAAGGCGCCAAGGAA------CATG-TACACAG-AGA-GGG--GCTCCGTCCTT-CAC---GT---TATCCCTTCT---GGG----TGATGACGG----AAGGCT-CGGTCGTG-TCCT--CGAAT------GTTTTTAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCTGAGGGCACGTCTGCCTGGGTGT-CACGCATCACGTCGCCCC--------AAAA-----TCCCACCCA--CTGGG----ATCA-------GGGAGC-GGAAGTTGGCCTCC-CGTGGCGCATT--GCTGCGGCTGGCCTAAAAAT--GAGCACGGGAGCGGCGCAATTCCGCGACGCGCGGTTGGTGG-TAATTCTTT-CCCC-TTCGGGCACC-TGTCCGGAGCGGCCT-CCCAT-CGATCTGCTCGA-CGGCC--TTCCATCAAACGAACGCGACCCCA------------------------------------------ Cuphea_glutinosa --------------------------------------GAACGACCA-GAGAA-CTAGTAAACAAGTAAA-CT-GTCGGTGGG---CTT----CCACC--G-GCA---AAAAGCCATC--GGTT-GCCGGCGG---TGCATGCC-GCTGT-CGTGACCGTTT-GGC--CGT-ACC---AAAAA--CCCGG--CGC---GGAAGGCGCCAGGGAA------CAAG-TACAAATAGGG-GGA--GCACAAGCC-T-CCC--CGTC-GTCTCCATTC------------GCCGTCGACGG-ATGGCT-CGGTGA---CCCT--CGAAT------ATTTAAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGACCGTTGCGAAATGCCATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGGATCACATCGCCCT--------CAAAAAAA-TCCTACCA---CGGGC----ATAC-------GGGAGC-G-AAGATGGTCTCC-CGTGGCTT-ATC-GCTGCGGTTGGCCTAAAAAA--GAGCACGGGAGCCGCGTGA-TCCGCGACGCACGGT-GGTGG-TAATTATTTCCCTC-CTCGGGCATC-AGTCCGGAGCGACCT-CCCAT-CGAGCTGCTCGA-CGGCC--TTCCATTCCACGAACGCGACCCCA------------------------------------------ Cuphea_heterophylla ------------------------------A----GCAGAACGACCA-GAGAA-CTAGTTAATAATAAGTATTCATCAGG-----ACTCA-CTCCCGTA-GAACAAAAGAACGTCATT--GATG-GAGCG-AA-CG-GTTAGTCCGTTGC-CATGA-CGTTC-GCT-AGTTAACTAA-AAAACGACCCCG--CGCGCAGTAAG-CCCAGCCCAAGACAAACAAGTAACAAAGCGGAGTG----TACTCGCC---CCTA-CCTT-TTTCGTGCGTC---G------TCCCT-CGGCGG-ACGGACT--G-CATA--------G-ATC-----G-TTTAAATTGAAA-CGACTCTCGGCAACGGATATCTCGG-{CGT}TCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACCTCGCCCC--------AAAAAA----CC{CG}ACTTGT--GG--T---GTAT-------GGGTGC-GGAAAATGGTCTCC-CGTGGCGCAAT--GCTGCGGTTGGCCTAAAATT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATATTTT-CCCC-CTCGGGCACC-AGTCCGGAGCGGCCT-TCCAC-GGATTTGCTCGA-CGGCC--TTCCAATCAACCAACGCGACCCCA------------------------------------------ Cuphea_ignea ----------------------------------------------A-GAGAA-CTAGTTAACAAGCAATTT--GTCGGGGG---ACTC-----TCCTC-G-ATACC-AAAAGCCATT--GAT--GACGGCAA---CGTTTATC-GCTGC-CGTGATCGT---GGC--CGT-ACT---AAAAACACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACATAG-CGTT-GA--TAACCGGCC-T--CTCGTGA---TACCCATCT----GGG----TTATGATGA----TTGGCT-CGGTCA---TC-TT-CGAAT------AAATTAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCTTTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACCTCGCCCC--------AAAAA---TACCCACTTGT--GG--T---GTAT-------GGGAGC-GGAACATGGTCTCC-CGTGGCGGAAT--GCTGCGGTTGGCCTAAAAAT--GAGCACGGGAGCGGCGTA-TACCGCGACGCACGGT-GGTGG-TAAT-ATT------------------------------------------------------------------------------------------------------------------------------ Cuphea_ingrata ------------------------------CGATCTCAGACAGACCA-GCGA-CC--GTAAACAAGCAA--CT-GTCGGTGGG---CTT----CCCCC--G-ACAGG---AAGCCATC--GGT--CGCGGCGG-C--GCCTGTC-GCGGT-CGTGATCGTTT-GGC--CGT-ACC---AAAAA-CCCCGG--CGC---GGAATTCGCCAAGGAA------CAAG-TACAGATTGA--GGA--GCACCAGCCTT--C---CGCC-GTCCCCCGTT----GGGG------CGAGGGCCG-ATGGCT-CGGTCAT--CCCT--CGAAT------ACAT-AAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGACCGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGTCGAGGGCACGTCTTCCTGGGTGT-CACGCATCACTTCGCCCC--------AAAAAAAAGTCCAACTA---CGGGAT---CTTC-------GGGAGC-GGAAGATGGTCTCC-CGTGGCG-AATC-G-TGCGGCTGGCCTAAAAAT--GAGCATGGGAGCTGCGTAA-TCCGCGACGCACGGT-GGTGG-TAATTCTTTCCCT-ACTCGGGCATC-AGTCCGGAGCGGCCT-CCCAT-CGAACTGCTCGA-CG-CC--TTCCATT-AACGAACGCGACCC-A-G---------------------------------------- Cuphea_llavea GGAACTGCGGAAGGAAATTGTCGAATCCTGCACATGCAGAACGACCA-GAGAA-CTAGTTAACAAGTATTT---GTCGGGGG---ACTC-----CCCTC-G-ACA---AAAAGCCATC--GGT--GACGGCAA---CGCTTGAC-GCTGT-CGTTATCGT---GGT--CGT-ACT---AAAAA-ACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAT-TATAAAGT-GA-GGA--CTACCGGCC-T-CTT---GTC-GTACCCGTCT----GGG----CTATGATGA----TTGG-T-CGGGAA---TCCC--CGGAT------ATTTAAAACCAAAA-TGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGTCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACCTCGCCCC--------AAAA----TACCCATTTG--CGG--T---GTAC-------GGGAGC-AGAACATGGTCTCC-CGTGGCGAAAT--GCTGCGGTTGGCCTAAATAT--GAGCACGGGAGCGACGTA-TTCCGCGACGCACGGT-GGTGG-TGATATTTT-CCCC-CTCGGGCACC-AGTCCGGAGCGGCCT-CCCAT-TTATCTGCTCGA-CGGCC--TTCTACCTAACAAATGCGACCCCA-GGTCA--GGCGGGGCTACCCCCTGAAT-------------- Cuphea_lutescens -----------------------------------GCAGAACGACCA-GAGAACCTCGTAAACAAGTAAATT--GTCGGTGG-----TCCG--CCCCT--G-ACA---AAATGCCAGT-CGATT-GA-GGCGG---CGCC-GTC-GTCGT-CCCGATCGTTT-GGC-TCGT-ACC---AAAAAA-CCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACAAAT-GGA-GGA--GCACCAGCC-T-CCCGTCG-----TCTCCTAC----GGG----CGATGACGG----ATGGCT-CGGTGA---TCCT--CGAAT------ATTTAAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGTCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACATCGCGCC--------CAAAAAA--TCCAACTA---CGG-AT---CTAC-------GGGAGC-GGAAGATGGTCTCC-CGTGGCGC-ATC-GCTGCGGCTGACCTAAAAAA--GAGCACGGGAGCGGCGT-TTTCCGCGACGCACGGT-GGTGG-TAATTCTTTCCCTC-CTCGGGCATC-AGTCCGGAGCGGCCT-CCCAC-CGAACTGCTCGA-CGGCC--TTCCATTCAACGAACGCGACCC-A-GG-CA------------------------------------ Cuphea_melanium ----GAGCGGAAGGACATTGTCGAATCCTGCAAAAGCAGAACGACCA-GAGAACC-AGTAATCAATGATT----GTCATGGG---AATTTTT--CCCTT-G-GCA---AAAAGCCATC--AGT--GACGGTGGG--CGCTTGTC-GCTCC-TGTCATAGT---GGC--CGT-ACTA--AAAAAAACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACAAAT-AGA-GGA--GCACCAGCC-A-CTCGTTGT----CTCCCTTC----GGG----TGACGACGG----ATGGCT-AGGGCA---TCCT--CGAAT-------TATAAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATAC{CT}{CT}GGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTG-ACGCCATCCGGTCGAGGGCACGTCTGCCTGGGTGT-CACGCATAACATCGCCCC--------AAAAAAA--TCCAACTA---CGG-AT---CTAC-------GGGAGC-GAAAGATGGTCTCC-CGTGGCGC-ATC-GTCGCGGCTGGCCTAAAAAT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATTCTTTCCCTC-CTCGGGCATC-TGTCCGGAGCGGCCT-CCCAT-GGAACTGCTCGA-TGGCC--TTCCATTCAACAAACGCGACCCCA-GGTCA--GGCGGGGCTACCCGCTGATTTAAGCAT-TCA-TA Cuphea_melvilla ----------------ATTGTCGAAACCTGCAAAAGCAGAACGACCA-GAGAACC-AGTTAACAA----------------------------------------AAAAATAGCCATC--GGT--GATGGGCGG--CGCTCGT{CG}-GCCCC-CATGATCGT---GGC--CGT-ACCT--AAAAA-CCCCGG--CGC---GGAAGGCGCCAAGGAA------CATG-TACAAAG-AGA-GGG--CTACCGGCCTT--TTG-------------------------------------------GCT-CGAGAA---CCCTT--GAAT------GTTAATAACAAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCTGAGGGCACGTCTGCCTGGGTGT-CACGCATCACATCGCCCC--------AAAA-----TCCCATCGA---GG-AT----CCC-------CGGGGC-GGAAGATGGCCTCC-CGTAGCG-AACCAGCTGCGGATGGCCTAAATAT--GAGCATGGGAGCGACGCA-TTCCGCGACGCACGGT-GGTGG-TAATTTGTT-CCCC-CTCGGGCATC-AGTCCGGATCGGCCT-CCCGTTGAA-CTGCTCGA-CGGCC-TTTCAATCCAACGAACGCGACCCCA-GGTCA--GG-GG----------------------------- Cuphea_micropetala -----------------------------------GCAGAACGACCA-GAGAA-CTAGTTAACAAGTATTT---GTCGGGGG---ACTT-----CCCTC-G-ACA--AAAAAGCCATC--GAT--GACGGCAA---CGCTTGCC-GCTGC-CGTGATCGT---GGC--CGT-ACTA--AAAA-CACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAT-TACAAAT-TGA-GGA--CCACCGGCC-T-CTC---GTC-GTACCCGTCT----GGG----CTACGTCGAC----TGGCT-CGGGAC---CCCT--CGAAT------ATTTTAAACCTAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTTCGCCCG-ACGCCACTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATAACATCGCCC---------AAAAAA--TACCCATTTGA--GG--TA--ATAC-------GGGAGC-GAAAAATGGTCTCC-CGTGGCGCTAT--GCTGCGGTTGGCCTAAAAAT--GAGCACGGGAGCGGCGTA--TCCGCGACGCACGGT-GGTGG-TAATATTTT-CCCC-CTCGGGCACT-AGTCCGGAGCGGCCT-CCCAT-TATCA-GCTCGA-TG-CC--TTCCACTCAACAAACGCGACCCCA-GGT-AA----------------------------------- Cuphea_mimuloides --------------------------CCTGCAAAAGCAGAACGACCA-GAGAACC-AGTTAACAAGTATTTTT-GTCGCGGG---ATTC-GCTCCCCC-GG--C-G-AAAAGGCCATC--GAT--GGCGG-G--CGCGATCCTC-GCGTC-CGCGATCGT---GGC--CGC-ACGA--AAAAACTCCCGG--CGC---GGAAGGCGCCAAGGAA------CATG-TACAAAT-AGAGGGA---CACCGGCCTT-CGC---GGC-ATCCCCGTTT----GGGG----AATGACGG----AAGGCT-CGGGCGCA-TCCT--CGGAT------GTCTTTAACAAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGGCATTCGGCTGAGGGCACGTCTGCCTGGGTGT-CACGCATCACATCGCCCC--------AAAA-----TCCAACAAT--CAGG-----ATCC-------GGGTGC-GGAAGTTGGCCTCCCACCGGCGCTTT--GCTGCGGCTGGCCTAAAAAT--GAGCACGGGAGCGGCGCA-TTCCGCGACGCGCGGT-GGTGG-TAACTCTTCCCCT--CTCGGGCATC-AGTCCGGAGCGGCCT-CCCAT-CGATCTGCTCGA-CGGCC--TTCGAACGAACGAACGCGACCCCA-GGTCA--GGCGGGGCTACCC--------------------- Cuphea_nitidula ----------AAGGACATTGTCGAATCCTGCACAAGCAGAACGACCA-GAGAA--TAGTTAACAAGCATTTT--GTCGGGGG---ACTC-----CACTC-G-ATA--AAAAAGCCATC--GAT--GATGACAG---CGACTTTC-GCTGC-CGTGATCGT---GGC-T-GT-ACTT--AAAA-CCCCCGG--CGC---GGAAGGCGCCAAGGAAA------AAG-GACAAAGCGTT--GA--TAACCGGCC-T-GTCATCGC--A--CCCATCT----GGG----TTACGATGAC----CGGCT-CGGGCA---TC-TT-CGAAT------AATTTAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACCTCGCCCC--------AAAAA---TACCCACTTGT--GG--T---GTAC-------GGGAGC-GGAACATGGTCTCC-CGTGGCGCTAA--GCCGCGGTTGGCCTAAAAAT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATATTTT-CCCC-CTCGGGCACC-AGTCCGGAGCGGCCT-CCCAT-GTATTTGCTCGA-TGGCC--TTCCACTTAACAAACGCGACCCCA-GGTCA--GGCGGGT-TACCCGCTGAATTA------------ Cuphea_parsonsia -GAACTGCGGAAGGACATTGTCGAATCCTGCAAAAGCAGAACGACCA-GAGAA-CTAGTTAACAAGGATTTT--GTCGGGGGG-AAATC-----CCCTC-G-ATAAAAAAAAGCCATC--GAT--GACGACAA---TGCTTGTC-GTTGC-CGTCATTGT---GGC--CGT-ACT---AAAA-CACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACATAT-AGAGGGA--CTACTAGCC-T-CTC---GTC-GTCCCTTTCT----GGG----AGACGACGTG----TGGCT-CGGGCC---TCCT--CCAAT------ATTTTAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATCTGGTCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACGTCGCCCC--------AAAA-----TCCCGCTA---CGGG-TA--CTAT-------GGGAGC-GGAAGATGGTCTCC-CGTGGCGCAAT--GCTGCGGCTGGCCTAAAAATATGAGCACGGGAGCGGCGTATTTCCGCGACGCACGGT-GGTGG-TAAATCTTC-CCCC-CTCGGGCATC-AGTCCGGAGCGGCCT-CCCAT-CGATCTGCTCGA-CGGCC--TTTCATTCAACGAACGCGACCCCA-GGTCA--GGCGGG-CTACCCGCTGATTTAAGCATATCA-TA Cuphea_pascuorum ---------------GATTGGCGAAACCTG{CG}AAAAGGAGAACGACCA-GAGA--CGAGTTAACAAGTATTT---GTCGGG------ACA------CC--GG--CA--AAAAAGCCACT--GGT--GACGG-G--CGTGCTTGTC-GCGTC-CGCCATCGT---GGC--CGT-AC----AAAAAGCCCCGG--CGC---GGAAGGCGCCAAGGCA------CATG-TACACAAAGA-GGG---ACACCAGCCTT-CA---TGCC-AT-CCCGTTT----GGG-------TGATGACGG-AAGGCC-CGGGCGTA-TTCT--CGATT------GTTTTTAACCAATA-TGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCTGAGGGCACGTCTGCCTGGGTGT-CACGCAACATGTCGGCCC--------AAAA-----TCCCGCAATT--GGG-----ATTC-------GGGTGC-GGAAGTTGGCCTCC-CGTGGCTATA-C-GCTGCGGCTGGCCTAAATAT--GAGCACGGGAGC{CG}GCGCA-TTCC--GACGG-CGGT-GGTGG-TAATTCT---CCTC--TCGGGGATC-AATCCCGAGCGGCCT-CCCCT-CGATTT-CTCGA-CGGCC--TTCAATCAAACA{AC}AT{CGT}{CG}{CG}{ACG}CCCCAAGGTCAACGCCGGGGCTACCCCTTA{CGT}GTTAAGATTTC{CT}A-TA Cuphea_procumbens ----------------------------------TGCAGAACGACCA-GAGAA-CTAGTTAACAAGTATTT---GTCGGGGGC--ACTC-----CACTC-G-ACA---AAAAGCCATC--GGT--GACGGCAA---CGCTTGAC-GCTGT-CGTTATCAT---GGT--CGT-ACT---AAAAA-ACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAT-TATAAAGT-GT-GGA--CTACCGGCC-T-CTT---CTC-GTACCCGTCT----GGG----CTATGATGA----TTGG-T-CGGGAA---TCCC--CGAAAT------ATTAAAACCAAAA-TGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTTCGCCCG-ACGCCATTCGGTCGAGGGCACGTCTGCCTGGGTGT-CACGGATCACCTCGCCCC--------AAAAA---TACCCATTTG--CGG--T---GTAC-------GGGAGC-AGAACATGGTCTCC-CGTGGCGAAAT--GCTGCGGTTGGCCTAAATAT--GAGCACGGGAGCGACGTA-TTCCGCGACGCACGGT-GGTGG-TGATATTTT-CCCC-CTCGGGCACC-AGTCCGGAGCGGCCT-TCCAT-TTATATGCTCGA-CGGCC--TTCTACCTAACAAATGCGACCCCA-GGTC------------------------------------- Cuphea_pseudosilene ------------------------------------------GACCA-GAGAA-CTAGTTAACAAGGATTTTTT--CGGGGGG--AAAT----CCCCTC-G-ATAAAAAAAGGCCATC--GAT--GACGACGA---TGCTTGTT-GTTGC-CGTCATTGT---GGC--CG-AACTT--AAAACAA-CCGGG--GC---GGAAGGGCCCAAGGAA------CAAG-GGCATAT-AGAGGGA--CTACCAGCC-T-CTC---GTC-GGCCCTTTCT----GGG----AGACGACGTG----CGGCT-CGGGCC---TCCT--CCAAT------ATTTTAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG--TCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATCTGGTCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACGTCGCCCC--------AAAA-----TCCCGCTAG--CGGG-TT--CTAT-------GGGAGC-GGAAGATGGTCTCC-CGTGGTGCAAT--GCTGCGGCTGGCCTAAAAATATGAGCACGGGAGCGGCGTATTTCCGCGACGCACGGT-GGTGG-TAAATCTTC-CCCC-CTCGGGCATC-AGTCCGGAGCGGCCT-CCCAT-CGATCTGCTCGA-CGGCC--TTTCATGCAACGAACGCGACCCCA------------------------------------------ Cuphea_pseudovaccinium ----------ACATTGCCGAAACCTGCAAAA----GCAGAACGACCA-GAGAA-CTAGTTAACAACTAT--CT-GTTGGAGG---AACC-----CCTTT-G-ACAG----AAGCCAAC--{ACG}GT--GACGGCGGG--TGCCCGTG-GCTCC-CGTCACCGT---GG--TCGT-ACC---AAAAAAACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACGAATGTA--GGA--GCGC{AC}AGCC-T-CCT---GTC-GTCCCCCTTTC---GGG----CGACGACGG----ATGTCT-CGGTCA---TCCT--CTAAT-------ATTCAAACCATAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCCGAGGG{AC}ACGTCTGCCTGGGTGT-CACGCATCACGTCGCCCC--------AAA----TATCCT-CCAA-CCG--AT---ATGC-------GGGAGC-GGAAGATGGTCTCC-CGTTGCGCACT--GCCGCGGCTGGCCTAAAAC-ATGAGCAAGGGAGCGGCGTA-TTCCGCGACGAACGGT-GGTGG-TAACTCTT{CT}CCCCC-C{CGT}CGGGCATC-AGTCCGGAGCG{CG}{CG}{CG}{CG}-{CG}CCAT-CGATAAGCTCGA-G{AGT}-CC--T{CG}CC-TTCAACG-A---------------------------------------------------- Cuphea_pulchra ----------------ATTGTCGAATCCTGCAAAAGCAGAACGACCA-GAGAA-CTAGTTAACAAGGATTT---GGCGGGGG---AATTC-ATTCCCTC-G-GCA--AAAAAGCCGTC--GAT--GATGGCGA---CGCTCGTC-GTTGC-CTTCGTCAC---GGC--CGT-ACTA--AAAA-CACCCGG--CGC---GGAAGGCGCCAAGGAA------CCAT-TACAAAT-AGA-GGA--CGACCGGCG-TCCCC---GAC-ATCCCCCTTTC---GGGGG-ACGACGGCGG----ACGGCTCGGTTGAA---CCT--CGAATA-----TTTTTAAATCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCTGAGGGCACGTCTGCCTGGGTGT-CACGCAACACATCGCCCC--------AAAAAA---TCCCGCCAG--CGGGGTAAA-TAC-------GGGAGC-GGAAGATGGTCTCC-CGTGGCGCAAT--GCTGCGGCTGGCCTAAAAAT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATTCTTCCCCCC-CTCGGGCATC-AGTCCGGAGCGGCCT-CCCAT-CATTATGCTCGA-CGGCC--TTCCACTAAACCAACGCGACCCCA-GGTCA--G--------------------------------- Cuphea_racemosa --------------------------------------GAACGACCA-GAGAA-CTAGTAAACAAGTATTT---GTCGGGGG---ATTCA-CCCCCCT--GGGCA--AAAAAGCCATT--TAT--GACGGCG----CGCCCGTC-GCTGC-CTTTATCGT---GGC--CGT-ACTA--AAAAA-T-CCGG--CGC---GGAAGGCGCCAAGGAA------CATG-TACACA-GAGAGGGT--GCATCGGCCTT-CAC---GAC-ATCCC-GTCC----GGG----AGATGACGG----AAGACT-CGGGCATA-TCCT--CGAAAT-----GTTTTTAACCAAAA-CGGCTTTTGGCAACGGATATTTCGGG-TCTCGGATCGTTGAGGACCGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCTGAGGGCACGTCTGCCTGGGCGT-CACGCATCACATCGCCCC--------AAAA-----TCCCACAAGT--GGG-----ATCT-------GGGAGC-GGAAGCTGGCCTCC-CGTGGCACAT-C-GCTGCGGCTGGCCTAAAGAT--GAGCATGGGAGCGGCGCAATTCCGCGACGCGCGGT-GGCGG-TAATTTTTC-CCCC-CTCGGGCATA-AGTCCGGAGCGGCCT-CCCCT-CGATCTGCTCGA-CG-CC--TTCCATCAATCGAACGCGACCCCA------------------------------------------ Cuphea_repens ----------------ATTGTCGAAACCTGCAAAAGTAGAGCGACTA-GAGAACC-AGTTAACAAGTATTTCTCGTCGGGG----AGCA---ATCCCTCGGGGC-AAATAAAGCCATC--GATC-AATGACGG-C--GCTCGTC-GGCGG-CATGATCAT---GGC--CGT-ACCT--AAAAACCCCCGGG-CGC---GGAATGCGCCAAGGAA------CAACGTACAAAG-AGAGGG---CCACCGTCCAT---AG-AGCT-ATA-CCCTTT----GGGG------CTTGGC-ACTATGGCT-CGGGAAG--TCCT--CAAAT------GTTTTTAACAAAAA-CGACTCTCGGCAACGCATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATCTGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACATCGCCCC--------CAAAAA----CCCATTAA-CC--AAT-GGG-AC------GGGGCGC-GGAAGCTGGCCTCC-CGTCGCGAACTT-GCTGCGGCTGGCCTAAATAT--GAGCATGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAA--CTT-CCCCC-CTCGG-CATC-AGTCCG-ATCG-C----------------------------------------------------------------------------------------------- Cuphea_salvadorensis ---------------------CGAAGCCTGGACAAGCAGAACGACCA-GAGAG-TTAGTTAACAAGTATTT---GTCGGGGG---ACTC-----CCCTC-G-ACA--AAAATGCCATC--GAT--GACGGCAA---CGACTGCC-GCTGC-CGTGATCGT---GGC--CGT-ACT---AAAAACACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACAAAG-CGA-GGA--CCACCGGCCTT-CCCGTCGTATGTACCCGTTT----GGG----CTACGA-------TTGGTT-CGGGCA---TC-TT-CGAAT------ATTTTTAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACCTCGCCCC--------AAAAA---TACCCACTCGT--GG--T---GTAC-------GGGAGC-GAAACATGGTCTCC-CGTGGCGCAAT--GCTGCGGTTGGCCTAAAAAT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATATTTTCCCCC-TCGGGGAACC-AGTCCGGAGCGGCCT-CCCATGGGATTTGCTCGA-GGGCC--TTCCACTTAACAAACGGCACCCC------------------------------------------- Cuphea_schumannii -----GCGGAA-GGACATTGTCGAATCCTGCACAAGCAGAACGACCA-GAGAA--TAGTTAACAAGTATTT---GTCGGGGG---ACTC-----CCCTC-G-GCA--AAAAAGCCATT--GAT--GACGGCAA---CGCTTGCC-GCTGC-CTTAATCAT---GG---CGT-ACT---AAAAACACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAT-TACAAAG-CGA-GGA--CCACCGGCC-T-CCCGTCG----TACCGTCT-----GGG----C-AC-ACAA----TAGGCT-CGGGAT---TC-TT-CTAAT------A-TTTAAACCAAAA--GATTTTCGGCAACGGATAT-TTGG-TTTTCGCATGGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATGGA-TCTTTGAACGCAAGTTGCGCCG--ACGCCATTCGGC-GAGGG-ACGT-TGCCTGGGTGT--ACGCATCAC-TCGCCCC--------AAAAA---CACCCATTTG--CGG--T---GTAC-------GGGAGC-GGAACATGGTCTCC-CGTGGCGCAAT--GCTGCGGTTGGCCTAAATAT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATATTTT-CCCC-CTCGGGCACC-AGTCCGGAGCGGCCT-CCCATG-GTTTTGCTCGA-CGGCC--TTCTACTTAACAAACGCGACCCCA-GGTCA--GGCGGG-TTACCCGCTGAATTTA----------- Cuphea_sessiliflora ---------------------CGAATCCTGCAAAAGCAGA-CGACCA-GAGAA-CTCGTAAACAAGTAAATT--GTCGGTGG-----TCCG---CCCCC-G-ACA---AAATGCCATC--GATT-GA-GGCGG---CGCCCGTC-GTCGT-CTCGATCGTTT-GGC--CGT-ACC---AAAAA-ACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACAAAT-GGA-GGA--GCACCAGCC-T-CCC---GCC-GTCTCCCTAC----GGG----CGATGACGG----ATGGCT-CGGTAA---TCCT--CAAAT------ATTTAAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGTCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACATCGCCCC--------AAAAAAA--TCCAACTA---CGG-AT---CTAC-------GGGAGCCG-AAGATGGTCTCC-CGTGGCGCA-TC-GCTGCGGCTGGCCTAAAAAA--GAGCACGGGAGCGGCGT-TTTCCGCGACGCACGGT-GGTGG-TAATTCTTTCCCTC-CTCGGGCATC-AGTCCGGAGCGGCCT-CCCAT-CGAACTGCTCGAGCGGCC--TTCCATTCAACGAACGCGACCCGA-GGTCA--GGCGGGGCTACC---------------------- Cuphea_sessilifolia ---------------------------------TAGCAGAACG-CCA-GAGA--CTAGTTAACAAGGATTTT--G-CGGGGG---AATT-----CCCTC--GGCA--AAAAAGCCGTC--GAC--GATGGCGA---TGCTCGTC-GTTGC-GTTCGTTC----GGC--CGT-ACT---AAAAACACCCGG--CGC---GGAAGGCGCCAAGGAA------CAGG-TACAAAT-AGA-GGA--CGACCGGCC-T--CC--CGAC-GTCCCCCTTT----GGG-------AGAAGACGG-ACGGCT-CGGTCGA---CCTT--GAAT------ATATTAAATCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGC-AAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGGACGCCATTCGGCTGAGGCGACGTCTGCCTGGGTGTCGACGCAACACATCGCCCC--------AAAAA----TCCCGCCAG--CGGGC-AAA-TAC-------GGGAGC-GGAAGATGGTCTCC-CGTGGCAGCAT--GCTGCGGCTGGCCTAAAAAT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATTCTTCCCCCC-CTCGGCCATC-AGTCCGGAGCGGCCT-CCCAT-CATTATGCTCGA-CGGCC--TTCAACTAAAC-AACGCGACCCCA-G-TCA------------------------------------ Cuphea_spectabilis -----------------------------------GCAGA-CGAC-A-GAGA--CTAGTTAACAAGCATTT---ATCGGGG----ACTC--------------------------------------------CCTCGATTGTC-GCTGT-CGTGATTGT---GGC-T-GT-ACT---AAAAACACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACAAAGCGTT--GA--TAATCGACCT--CTCGTCGC----ACCCGGCGT---GGG----TTACGACGC----TCGGCT-CGGTCA---TC-TT-CGAAT------AATTTAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTAGCGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGC-ATTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGGATCACCTCGGCCC--------AAAAA---TACCCACTTGT--GG--T---GTAC-------GGGAGC-GGAACATGGTCTCC-CGTGGTGCAAT-A-CTGCGGTTGGCCTAAAGAT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATAATTCCCCCC-C-GGGGAACC-AGTCCCGGGCGGCCT-CC-AATGGGCCTCCTCGC-CGGCCC-TT--AATCAACAAACGGG-CCCCAAGAAAA--GCGGGGCCTAACAACCGCATTAAG{CGT}CCGACAATA Cuphea_spermacoce -----------------------------------GCAGAACGACCA-GAGAA-CTAGTTAACAACGATTT---GTCGGGGGGG-ACTC-----CCCTC-G-ATA--AAAAAGCCATT--G-TT-GACGGCGA---TGCTCGTC-GTTGC-CGTGATCGT---GGC--CGT-ACT---AAAAACACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACATAT-AGA-GGA--CGACCGGCC-T--CT--TGTC-GTCCCTTTTC----GGG-------TGATGACG-TGTGGCT-CGGGCC---TCCT--CGAAT------ATTTTAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTTGGCTGAGGGCACGTCTGCCTGGGTGTGCACGCATCACGTCGCTCC--------AAAA-----TCCCCCTAG--CGG-TT---GTAT-------GGGAGC-GGAAGATGGTCTCC-CGTGGCGTAAT--GCTGCGGCTGGCCTAAATATATGAGCACGGGAGCGGCGTATTTCCGCGACGCACGGT-GGTGG-TAATTTCTTCCCCC-CTCGAGCATC-AGTCCGGAACGGCCT-CCCAT-CGATCTGCTCGG-CGGCC--TTCCACTCAACGACCGCGACC-GA-GGTCAA-GCC-GGGCTACC---------------------- Cuphea_splendida -------------------------------------AGAACGACCA-GAGAACC-AGTTAACAA----------------------------------------AAAAATAGCCATC--GGT--GATGGGCGG--CGCTCGTC-GCCCC-CATGATCGT---GGC--CGT-ACCT--AAAAA-CCCCGG--CGC---GGAAGGCGCCAAGGAA------CATG-TACAAAG-AGAGGG---CTACCGGCCTT--TT---G----------------------------------------GCT-CGGGAA---CCCTT--GAAT------GTTAATAACAAAAA-CGACTCTCGGCAA-GGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCTGAGGGCACGTCTGCCTGGGTGT-CACGCATCACATCGCCCC--------AAAA-----TCCCATCGA---GG-AT-----AC-------GGGAGC-GGAAGATGGCCTCC-CGTAGCG-AACCAGCTGCGGATGGCCTAAATAT--GAGCATGGGAGCGACGCA-TTCCGCGACGCACGGT-GGTGG-TAATTTGTT-CCCC-CTCGGGCATC-AGTCCGGATCGGCCT-CCCGTTGAA-CTGCTCGA-CGGCC--TTCAATCCAACGAACGCGACCCCA-GGTCA--GGCGGGGCTACCCGCTAGTTTAAG---------- Cuphea_strigulosa -----------------------------------GCAGAACGACCA-GAGAA-CTAGTTAACAAGGATTTT--GTCGGGGGG-AAATC-----CCCTC-G-ATAAAAAAAAGCCATT-CGAT--GACGACAA---TGCTTGTC-GTTGC-CGTCATTGT---GGC--CGT-ACT---AAAA-CACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACATAT-AGAGGGA--CTACCAGCC-T-CTC---GTC-GTCCCTTTCT----GGG----AGACGACGTG----TGGCT-CGGGCC---TCCTTT--AAT------ATTATAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATCTGGTCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACGTCGCCCC--------AAAA-----TCCTGCTAG--CGGG-T---CTAT-------GGGAGC-GGAAGATGGTCTCC-CGTGGCGCAAT--GCTGCGGCTGGCCTAAAAATATGAGCACGGGAGCGGCGTATTTCCGCGACGCACGGT-GGTGG-TAAATCTTC-CCCC-TTCGGGCATC-AGTCCGGAGCGGCCT-CCCAT-CGATCTGCTCGA-CGGCC--TTTCATTCAACGAACGCGACCCCA-GGT-------------------------------------- Cuphea_subuligera -------------------------------------------------------TAGTTAACAAGCATTTT--GTCGGGGG---ACTC-----TCCTC-G-ATAAAAAAAAGCCATT--GAT--GACGGCAA---CGTTTATC-GCTGC-CGTGATCGT---GGC--CGT-ACT---AAAAACACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACATAGCGTT--GA--TAACCGGCC-T-CTCGTC----ATACCCATCT----GGG----TTATGACGA----TTGGCT-CGGTCA---TC-TT-CGAAT------AAATTAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCC-ACGCCATTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACCTCGCCCC--------AAAAA---TCCCCCCTTGT--GG--T---GTAT-------GGGAGC-GGAACATGGTCTCC-CGTGGCGGAAT--GCTGCGGTTGGCCTAAAAAT--GAGCACGGGAGCGGCGTA-TACCGCGACGCACGGT-GGTGG-TAATATTTC-CCCC-TTGGGGCACC-AGTCCGGAGCGGCCT-CCCAT-TTATTTGCTCGA-CGGCC--TTCCACTCAACAAACGCGACCCCA-GGTCAA-GGGGGGGCT--CCCCCG----------------- Cuphea_teleandra --------------------------------------GAACGACCA-GAGAA-CTAGTTAACAACGAT--CT-GTTGGAGG---TATC-----CCTTT-G-ACAG---AAAGCCACC--GAT--GACGGTGGG--TGCCCGTC-GCTCC-CGTCACCGCT--GG--TCGT-ACT---AAAAAAACCCGG--CGC---GGAAGGCGCCAAGGAA------CGAG-TACGAATGTA--GGA--GCGCCAGCC-T-CCT---GCTTGTCCCCCTTTC---GGG----CGACGACGG----ATGTCT-CGGTCA---TCCT--CTAAT------ATTTCAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCCCCCG-ACGGCATTCGGCCGAGGGCACGTCTTTCTGGGTGT-CACGGATCACGTCGCCCC--------AAA----TATCCTACCAA--CG--AT---ATTC-------GGGAGC-GGAAGATGGTCTCC-CGTTGCGCACT--GCCGCGGCTGGCCTAAAAC-ATGAGCAAGGGAGCGGCGTA-TTCCGCGACGCACGGC-GGTGG-TAACTCT--CCCCC-CTCGGGCAAC-AATCCTGAGCGGCCT-CCCAT-CTATAAGCTCGA-CGACCC--TCCTTTCAACGAACGCGA-CACAAG-TCAA-G--------------------------------- Cuphea_thymoides -----------------------------------GCAGAACGACCA-GAGAA-C-CGTAAACAAGAAAA-CT-GTCGTTGGG---CTT-----CAAC--G-ACA---AAAAGCCACT-CGGTT--CCGGCGG---TGCATGTC-GCTGT-CGTGACCGTTT-GGC--CGT-ACC---AAAA--ACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACAAATAGTT-GGA--TCACAAGCC-T-CCC---GTC-GTCTCCATTT----GG-----CGACGACGG----ATGGCT-CGGTGA---TCCT--CCAAT------ATTTAAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGTCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACATCGCCCC--------AAAAAAA--TCCTACCA---CGG-AT---CTAC-------GGGAGC-GGAAGATGGTCTCC-CGTGGCGC-ATC-GCTGCGGTTGGCCTAAAAAA--GAGCACGGGAGCGGCGTAA-TCCGCGACGCACGGT-GGTGG-TAATTGTTTCCCTC-CT{CG}GGGCATC-AGTCCGGAGCGA{CGT}{CGT}{CGT}-{GT}CCAT-CGAGCTGCTCGA-CGGCC--TTCCATTCCACGAACGCGACCCCA-G-TCA--G--------------------------------- Cuphea_urens -GAACTGCGGAAGGACA-TGTCGAATCCTGCAAAAGCAGAACGACCA-GAGAA-C-AGTAATCAATGATT----GTCATGGG---AATTTTT--CCCTT-G-GCA---AAAAGCCATC--GGT--GACGGTGGG--CGCTTGTC-GCTCC-TGTCATAGT---GGC--CGT-ACTAA-AAAAA-ACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACAAAT-AGA-GGA--GCACCAGCC-A-CTCGTT----GTCTCCCATC----GGG----TTACGACGG----ATGGCT-AGGGCA---TCCT--CGAAT-------TATAAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGTCGAGGGCACGTCTGCCTGGGTGT-CACGCATAACATCGCCCC--------AAAAAAA--TCCAACTA---CGG-AT---CTAC-------GGGAGC-GAAAGATGGTCTCC-CGTGGCGC-ATC-GTCGCGGTTGGCCTAAAAAT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATTCTTTCCCTC-CTCGGGCATC-TGTCCGGAGCGGCCT-CCCAT-GGAACTGCTCGA-TGGCC--TTCCATTCAACAAACGCGACCCCA-GGTCA--GGCGGGGCTAACCGCTGATTTAAG---------- Cuphea_utriculosa ------------------------------------------------------CTAGT-AACAAGTAT--CT-GTCGC{CT}{CT}G---AGTCA-CTCCCCTC-?{CGT}{CGT}CA---AAAAGCCATC--GAT--GACG-CG--C-CGCTC{AG}TC-GT-GT-CATGATTGT---GGT--CGT-ACCA--AAAAT-A-CCGG--CGC---GGAAGGCGC-AAGGAA------CATG-TACACTC-AGA-GGC--GCACCGGCCTT-CAC---GGC-ATGCCCGTT-----GGG----CAATGACGG----AAGGCT-CGGTCG---TCCT--CAAAT------GTTTTTAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACTTCGCCCC--------AACAAAAAATC{CG}{CG}{CG}{CG}{CG}{CG}{CG}{CG}--GGG-T------C-------GGGAGC-GGATGTTGGCCTCC-CGTGGCGCAT-C-G-TGCGGCTGGCCTAAAAGT--GAGTACGGGAGCGGCGCA-TTCCGCGACGCGCGGT-GGTGG-TAATTATT------------------------------------------------------------------------------------------------------------------------------ Cuphea_watsoniana ----AT{AG}{CG}{CG}GAAGGACATTGTCGAATCCTGCACAAGCAGAACGACCA-GAGAA-CTAGTTAACAAGCATTTT--GTCGGGGG---ACTC-----CCCTC-G-ATA--AAAAAGCCATC--GAT--GACGGCAG-C--GACTGTC-GCTAC-CGTGATCGT---GGC--CGT-ACT---AAAAACACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACAAAGCGTT-GA---TAACCGGCC-T--CT--CGTC-GCACCCGTCT----GGG-------TTACGA-TGACTGGCT-CGGGCA---TC-TT-CGAAT------AATTTAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATCTGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACCTCGCCCC--------AAAAA---TACCCACTTGT---GG-T---GTAC-------GGGAGC-GGAACATGGTCTCC-CGTGGCTCGA-C-GCTGCGGTTGGCCTAAAAA---GAGCACAGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATATTT-CCCCC-CTCGGGCACC-AGTCCGGAGCGGCCT-CCCAT-GGATTTGCTCGA-CGGCC--TTCCACTTAACAAACGCGACCCCA-GGTCA--GGCGGGGCTACCCGCTGAAT-------------- Cuphea_wrightii ---------------------------------TAGCAGAACGACCA-GAGAA-CTAGTTAACAAGTATTT---GTCG-AGGG---ACTA----CCCTC-G-ACA--AAAGAGCCATCT-GAT--GACGGCAA-CG-GCTT-CC-TTTGT-CGTGATCGT---GGC--CGT-ACT---AAAAACACCCGG--CGC---GGAAGGCGC-AAGGAA------CAAA-TACAAAG-CGA-GGA--CTGCCTACCTT-CT-G-TCT---TACCCTTTT----GGG----CTACGATGG----TTGGCT-TGAGCA---TCCT--CGAAT------AATTTAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGGCATTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGGATCATCTCGCCGC--------CAAAA---CACCCACTTGT--GG--T---GTAT-------GGGAGC-GGAAAATGGTCTCC-CGTGGCGCAAT--GCTGCGGTTGGCCTAAAAAT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATATTTT-CCCC-CTCGGGCACC-AGTCCGGAGCGGCCT-CCCAC--AATCTGCTCGA-CGGGCCTTTGCACTCAACCGACGCGACCCCA-GGTCA--GGCGGGGTTACC---------------------- Lythrum_lineare TGCGGAAGGATCATTGTCGAATCCTGTC----------GAACGACCC-GTGAA-CTTGTGATTAT--AT--CC-CCGGGATGG-TATGTGCGCACTGTT-GCATG---------CATC--AA---------------------------------------CCGG--TTGT-AC-AAC---GTACCCCGG--CGC---GGAAGGCGCCAAGGAT------CAA--TATAAGAGCA-------GCACGAGCC-----------CGAACGCATCCC-------------TTAATGGG---ATGT---CGGGAAGACTCGTG-CCA-TCTC---AATCGTAACAACAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCAAA-GC--TTCGGCTGAGGGCACGTCTGCCTGGGTGT-CACGCATCATGTCGCCCCTGAGACCCTCGCCTCCCTCCCGTCC---CGGAGTGTGGCCAGTGCTA-GGGCGC-GGAAGATGGCCTCC-CGTTGCATCC-C-GCTGCGGCTGGCCTAAAAGA--GAGCATGGGAGCGACGTA-CTCCGCGGCGCGCGGT-GGTGG-TAATATCG--CCCC--TCGGGC-TAGTGTCCGGA-CTGTCT-CTCCC--TCGTTGCTCGG-TGGCC--TTACACTCAACACATGCGACCCCA-GGTCA--GGCGGGACTACCCGCTGAGTTTAA---------- Pehria_compacta ----------------TCGAATCCTGCAAA-----GCAGAACGACCC-GAGAA-CTAGTTACACCAAAAG-CC-GCTGGGGG---AG----CCCCTCTC-CCA-G-------CCCGTC-GGGTT-GACGTGGG---CGC---TC-GTCGC-CTCTGTCATCCCG--TACGT-A-CAACAAAA---CCCGG--CGC---GGAAAGCGCCAAGGAAAA----GA-GATACAAGG-AGA-GGT--GCACGGGC-T----------CGATGCCATCCCCC-------ATC-AT-GCGGG---ATGG---CGGAGCGC-CCGTG-CCG-TCTCGAGTGTTTTAACCACAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAA-GCCATCTGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACGTCGCCCC--------AA--CTCTCACTCG-----------------AATT-----GGGCGC-GGAAGATGGCCTCC-CGTGGCGCAGT--GCTGCGGCTGGCCTAAAAAT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCGCGGT-GGTGG-TAATGTCG--CCCC--TCGGGC-ATCAGTCCGGAGCGCCC--TTCCCCAATGCTGCTCGG-TGGCC--TTCCATCCAACGAA-C-------------------------------------------------- Pleurophora_saccocarpa ----------------TTGTCGAAACCTGCAAA--GCAGAACGACCC-GAGAA-CTAGTTCCAAA------CCCGTCGGGGG---AGTT--CCTCCCCC-G-ATGGG-----CTGG----GAT--GACGGGCGGCCTTGT-GTCAGTGAT-CT---------CGGC--CGT-AGTACCAAA----CCCGG--CGC---GGAAGGCGCCAAGGAA------CATG-TACAAAG-AGAGG------ACACG---TTCCCCTTACCCACCCACCGTCCGGCGGG---ATGTGATAGG-----C-T-T-CG-TGACG--CCT--CGAATG------TTTCAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAA---CGTAGCGAAATGCGATACTTGGTG--AATTGCAGAATCCCGG-AATCATCGAGTCTTTGAACGCAAGTTGCGCC-GAA-GCCATTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACGTCGCCCC--------AAAACTCCC-CT----AA-TCGGG-----AGAC--------GGAGC-GGAAGATGGCCTCC-CGTGGCGT-AG-AGTTGCGGCTGGCCTAAATTT--GAGCACGGGAGCGGCGTATTT-CGCGACGCGCGGT-GGTGG-TAATTTCG---CCC-CTCGGGCATC-AGTCCGGAGCGCCCTTCCCCCTAGC--TGCTCGA-TGGCC--TTCTATCCAACGACCGCGACCCCA-GGCCAA--GCGGGGCCT------------------------ Woodfordia_fruticosa --------------------TCGAATCCCGCAAAAGCAGAACGACC-GGAGAA-CTAGTTACAACAAAAG-CT-GCTGGGGG---A--GA----CCCTC-TCCCGGCC-----CTGCC-GGGAT-GACGGGGG---CGC---TC-GTCGC-CTCCGTGATCCCGG--ACGT-A-CAACAAAA---CCCGG--CGC---GGAAGGCGCCAAGGAA------CA-GATACAAGG-AGC-GGC--GCACTGGCC--CGACGCCTTC--CCC-ATCAC--GCGG-----G-ATGACGG---AGCGGCCGTGCCCT---CTCTT-CGAGT-------GTTT-AACCACAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAA-GCCATTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACGTCGCCCC--------AA-----CTCCCCCCGAA--TG------------------GGGCGC-GGAAAATGGCCTCC-CGTGGCGT-GG-AGCTGCGGCTGGCCCAAAAAA-TGAGCACGGGAGCGGCGTA-TTCCGCGACGCGCGGT-GGTGG-TAATTGT---CCCC-CTCGGGCATC-AGTCCGGAGCGCCCTTCCCAAATGCT--GCTCGG-TGGGCC-TTCCATCCAACGAAC--------------------------------------------------- ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = ITS) = N: 1-803; CODONPOSSET CodonPositions (CHARACTERS = ITS) = N: 1-803; END; BEGIN TREES; TITLE Tb7877; LINK TAXA = Taxa1; TRANSLATE 1 Woodfordia_fruticosa, 2 Pleurophora_saccocarpa, 3 Pehria_compacta, 4 Lythrum_lineare, 5 Cuphea_wrightii, 6 Cuphea_watsoniana, 7 Cuphea_utriculosa, 8 Cuphea_urens, 9 Cuphea_thymoides, 10 Cuphea_teleandra, 11 Cuphea_subuligera, 12 Cuphea_strigulosa, 13 Cuphea_splendida, 14 Cuphea_spermacoce, 15 Cuphea_spectabilis, 16 Cuphea_sessilifolia, 17 Cuphea_sessiliflora, 18 Cuphea_schumannii, 19 Cuphea_salvadorensis, 20 Cuphea_repens, 21 Cuphea_racemosa, 22 Cuphea_pulchra, 23 Cuphea_calophylla, 24 Cuphea_brachypoda, 25 Cuphea_bahiensis, 26 Cuphea_axilliflora, 27 Cuphea_appendiculata, 28 Cuphea_angustifolia, 29 Cuphea_acinifolia, 30 Cuphea_pseudovaccinium, 31 Cuphea_pseudosilene, 32 Cuphea_procumbens, 33 Cuphea_pascuorum, 34 Cuphea_parsonsia, 35 Cuphea_nitidula, 36 Cuphea_mimuloides, 37 Cuphea_micropetala, 38 Cuphea_melvilla, 39 Cuphea_melanium, 40 Cuphea_lutescens, 41 Cuphea_llavea, 42 Cuphea_ingrata, 43 Cuphea_ignea, 44 Cuphea_heterophylla, 45 Cuphea_glutinosa, 46 Cuphea_gaumeri, 47 Cuphea_fuchsiifolia, 48 Cuphea_flavisetula, 49 Cuphea_flava, 50 Cuphea_ericoides, 51 Cuphea_epilobiifolia, 52 Cuphea_disperma, 53 Cuphea_denticulata, 54 Cuphea_decandra, 55 Cuphea_cyanea, 56 Cuphea_circaeoides, 57 Cuphea_carthagenensis; TREE Fig._1 = [&R] (4,((3,1),(2,((((29,45),((28,(((27,26),(((((((55,22),((19,18),6)),((38,13),37)),43),11),44),15)),41,35),32,14,5),((57,(34,31)),12)),((25,49),50,16),((47,40),42,30,10),17,9),24,23,56,54,53,52,48,46,39,(36,33,7),21,20,8),51)))); END; BEGIN TREES; TITLE Tb7878; LINK TAXA = Taxa2; TRANSLATE 1 Woodfordia_fruticosa, 2 Pleurophora_saccocarpa, 3 Pehria_compacta, 4 Lythrum_lineare, 5 Cuphea_wrightii, 6 Cuphea_watsoniana, 7 Cuphea_utriculosa, 8 Cuphea_urens, 9 Cuphea_thymoides, 10 Cuphea_teleandra, 11 Cuphea_subuligera, 12 Cuphea_strigulosa, 13 Cuphea_splendida, 14 Cuphea_spermacoce, 15 Cuphea_spectabilis, 16 Cuphea_sessilifolia, 17 Cuphea_sessiliflora, 18 Cuphea_schumannii, 19 Cuphea_salvadorensis, 20 Cuphea_repens, 21 Cuphea_racemosa, 22 Cuphea_pulchra, 23 Cuphea_pseudovaccinium, 24 Cuphea_pseudosilene, 25 Cuphea_procumbens, 26 Cuphea_pascuorum, 27 Cuphea_parsonsia, 28 Cuphea_nitidula, 29 Cuphea_mimuloides, 30 Cuphea_micropetala, 31 Cuphea_melvilla, 32 Cuphea_melanium, 33 Cuphea_lutescens, 34 Cuphea_llavea, 35 Cuphea_ingrata, 36 Cuphea_ignea, 37 Cuphea_heterophylla, 38 Cuphea_glutinosa, 39 Cuphea_gaumeri, 40 Cuphea_fuchsiifolia, 41 Cuphea_flavisetula, 42 Cuphea_flava, 43 Cuphea_ericoides, 44 Cuphea_epilobiifolia, 45 Cuphea_disperma, 46 Cuphea_denticulata, 47 Cuphea_decandra, 48 Cuphea_cyanea, 49 Cuphea_circaeoides, 50 Cuphea_carthagenensis, 51 Cuphea_calophylla, 52 Cuphea_brachypoda, 53 Cuphea_bahiensis, 54 Cuphea_axilliflora, 55 Cuphea_appendiculata, 56 Cuphea_angustifolia, 57 Cuphea_acinifolia; TREE Fig._2 = [&R] (((((((((26,29),21),49),((7,46),(41,47)),39),(((6,56,48,37,(34,25),5,28,(11,36),15,(30,(55,54)),19,18),(((43,53),(22,42)),16),(14,((12,27,24),50))),(((35,(((52,38),(9,57)),((17,40),33))),((32,8),51)),45),(10,23)),(20,((13,31),44))),2),1),3),4); END;