#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on March 28, 2024; 18:08 GMT TreeBASE (cc) 1994-2008 Study reference: Schubert F.R., Sobreira D.R., Janousek R.G., Alvares L.E., & Dietrich S. 2014. Dact genes are chordate specific regulators at the intersection of Wnt and Tgf-beta signaling. BMC Evolutionary Biology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S15970] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=54; TAXLABELS Anolis_carolinensis_Dact1 Anolis_carolinensis_Dact2 Anolis_carolinensis_Dact3 Anolis_carolinensis_Dact4 Branchiostoma_floridae_dact Callorhinchus_milii_Dact1 Callorhinchus_milii_Dact2 Callorhinchus_milii_Dact3 Callorhinchus_milii_Dact4 Chrysemys_picta_bellii_Dact1 Chrysemys_picta_bellii_Dact2 Chrysemys_picta_bellii_Dact3 Chrysemys_picta_bellii_Dact4 Danio_rerio_dact1 Danio_rerio_dact2 Danio_rerio_dact3a Danio_rerio_dact3b Danio_rerio_dact4 Danio_rerio_dact4r Gallus_gallus_Dact1 Gallus_gallus_Dact2 Homo_sapiens_Dact1 Homo_sapiens_Dact2 Homo_sapiens_Dact3 Latimeria_chalumnae_Dact1 Latimeria_chalumnae_Dact2 Latimeria_chalumnae_Dact3 Latimeria_chalumnae_Dact4 Lepisosteus_oculatus_Dact3 Lepisosteus_oculatus_dact1 Lepisosteus_oculatus_dact2 Lepisosteus_oculatus_dact4 Lepisosteus_oculatus_dact4r Lethenteron_japonicum_dactA Lethenteron_japonicum_dactB Lethenteron_japonicum_dactC Lethenteron_japonicum_dactD Monodelphis_domestica_Dact1 Monodelphis_domestica_Dact2 Monodelphis_domestica_Dact3 Oreochromis_niloticus_dact1 Oreochromis_niloticus_dact2 Oreochromis_niloticus_dact3a Oreochromis_niloticus_dact3b Oreochromis_niloticus_dact4 Petromyzon_marinus_dactA Petromyzon_marinus_dactB Petromyzon_marinus_dactD Takifugu_rubripes_dact2 Takifugu_rubripes_dact3a Takifugu_rubripes_dact3b Takifugu_rubripes_dact4 Xenopus_tropicalis_dact1 Xenopus_tropicalis_dact3 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M22925] TITLE Dact_genes_in_chordates; LINK TAXA = Taxa1; DIMENSIONS NCHAR=320; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Anolis_carolinensis_Dact1 MAERARTRERLEATLAGLAELSFLRRRQELRVQRWMLRRQLLRGLLQELDKQISDLRLDETDSRPSSGFYELSDGTSGSLSNSSNSVFSECLDASLNSDGRPKSA-DLGASSPKYQCDLVSKNGNDVYRYPSPLHAVAVQSPMFKMDSYILSLVQKRIRKPRTNLDPKRSMCVNGSYIPASVKLKKHRKGKKKCRDDPKKLLETGLLGREKPKHKRRWKLSAEVSYEEARRRNRRESDSEYSAECTSEDEYTTFGDSESSLSGVEFVGESTTTSDSDESGGLIWSQFVNAKAFVKIKASHNLKKKILRFRSGSLKLMTTV Anolis_carolinensis_Dact2 MGDRGRVSERLQAALAGLQELQVLREKQRARVRGALLKEQLLRGLKDQLDQQISELKLDDSDSRPSSGFYELSDAGSCSLSNSCTSVFSESDETTVHSRPRPVSTGDLPLCGQKYQSDLISKSGNDVYLYPSPLHAVALQSPLF-PGGYINKLLQLTR-ASERCPIIPKQL-QGAKFVPAAMKVKKRRKPRKLPVEWNRRSCESSLYSLETKKKHRKWQSTVEISAKAHPRKRIMRSDSEYSAECTSEGEYTAFGDSESSESDSEG---SSLTLDYEEEEILIWPDSSPSPKLCRIKASKALKKKIRRFQPASLKVMTMV Anolis_carolinensis_Dact3 -----------------------------------------LPGLMWELEQQLGLLRLNETDSWPSSGFFF--FFLIK-----IYYFKKETPESRLGASERPKSVGDVTVRSPPARYP------PDPFLYPSPLHAVALQSPLLKVESYISRLIRRRSRKPRTSLEPVRSLCVKAQYIPAHGKKKKGRRPRKKCREDARKSQENSLLERERQRRPRKWRSTAEICQEEL--ASRGQSD---S-ECQAEEG---YGDSESSVSDGDSPVYSSASSDTDESGGLVWPQQLQPKVFVKIKASHALKKKIMRFRSGSLKVMTTV Anolis_carolinensis_Dact4 MGERLGIGERLQATLPGILELDLLRERQRDAVEGAL-PQQVGAAVD-LGMKIVTEQLLLEVDSRPSSGFYDTSEMG--SLSDSCASMHSDGDEAAVRINRRPVSTGDLGS--PQYKADLVSRNTSEVYHYPSPLHAVALQSPLFQLDQYIAKLVLRYK---RTD-SGLKSVC----------------------------SE-GLP-SRELRRRLPKWTSVMEISSRT-PRFRP-M--LAFSSDSGF-ER---ATTSSSS---LAKVSAINLNGD-------WILQQLVRVKLHRSRSFKEFKKAMSRSLRG--SRATK- Branchiostoma_floridae_dact MPDRSLQ-ARLMASEAAMEELRLLRQRQETLVEEAKLRNAVLKDLVHTLNTQILQLKLALPDSRRSSGFFDSSP----SPPLTPDIASPEKDEIIRE--------GESSAR-KKLALRPRSKTGSVCYPYPSPMHAIAIQSDMYPPGGTSAGLLRPVSAKPKPTP---RLLKQEAKSEH-PSNA-KTVIRPRRCNSHETSFQDSNRMSKDRLSQPKRHDGHKDSRQGDKGLRNRHSQSSTSLYDYSSEE-S----DSEINRSDSESDSES-----SDEAGGLVLA-----------------RRRL-SSQDSLSRMFPSC Callorhinchus_milii_Dact1 MSDRCRTRDRLEAALAGLGELDFLKQRQEYLVRGAMLRKQLLRGLIQELDRQISDLRLDETDSRPSSGFYELSDGTSGSLSNSSNSVFSECLDASLSTDGRPKSA-DLEVRSPKYQCDLVSKNGSDVYRYPSPLHAVAVQSPIFRLDNYIFGLI------------------VNAQYIPGTVKGKKPKKDRKKCRDDNRKPPESSLLGREKPRYKRRWKSTVEVTHEEAKRRRRRESDSEYSAECTSEDEYTTFGDSESSLSEVDFVGETTSSSDSDESGGLVWPQLGVSKAFVKIKASHNLKKKSCAF----------- Callorhinchus_milii_Dact2 --------------------------------------------------RQISELKLDESDSRPSSGFYDLSDGGSCSLSNSCTSVYSECDETTVQLRQRPVSTGDLPSCARRYRCDLVSKNSSDVYNYPSPLHAVALQSPLFSTTPFNPVMSWPPV-PKLSQQHGFTIS-PKAQFVPAATKVKKRRKLR-IPIDLAAFSCESILYVSNMKKKQRKWQSSVEIFTRVP--SQQQMSDSEYSAECTSEDDHTTFGDGELSGGSVSD-SNSSLSLDDDDPA-LVWPQGLHSAQVCRIKASKALKKKIRRFQPDSLKIMTMV Callorhinchus_milii_Dact3 ------------------------------------------------------------------------------------------------------------------------------------------------RVESYIAGLVHKRTRKLRTSLDSPRSLCVGGGYRPIFFSGRKVRKGKRKCREE-RKSQENSLL---QPQAL--------------------------------------------------------------------------------------------------------- Callorhinchus_milii_Dact4 ------------------------------------------------------------------------------------------------------------D---LRYQCDLVSRNSSEVYRYPSPLHAVALQSPLFRLDGYISSLASRRAGGE----RLGRSIC-----------------------------------SHR-GPVG--WASALEISVSLDAQRR--------------------------------------------------------------------------------------- Chrysemys_picta_bellii_Dact1 -AERQRTRERLEATLAGLGELDYLRQRQELLVKSLLLRKQLLRGLLQELDKQISDLRLDETDSRPSSGFYELSDGASGSLSNSSNSVFSECLETSLNSDGRPKSA-DLEVR-SKYQCDLVSKNGNDVYRYPSPLHAVAVQSPMFKIDGYILSLVQKKTRKPRTSLDPKRSMCVSAQFIPATVKLKKHRKTKKKCRDDLKKSQEPSLPGREKPKHKRRWKSSAEISYEEARRRNRRESDSEYSAECTSEDEYTTFGDSESSLSEVEFVGESTTTSDSDESGGLIWSQFVNAKAFVKIKASHNLKKKILRFRSGSLKLMTTV Chrysemys_picta_bellii_Dact2 MGDRCRVGERLQAALAGLQELQVLREKQRALVSGALLKEQLLRGLKDQLDQQISELKLDDSDSRPSSGFYDLSDGGSCSLSNSCTSVYSESDETTVHSRPRPVSTGDLQPCGQKYQNDLVSKSGNDVYPYPSPLHAVALQSPLF-PGGYINKLLQLTR-ASERVSIIPKQL-QSAQFVPAAMKVKKRRKSRRLPVEWSRRSCESSLFSLETKKKQRKWQSTVEISAKAHPRRRVLRSDSEYSAECTSEGEYTTFGDSESSESDSEG-NSSSLTLDYDDA--LVWPEASPPPKICRIKASKALKKKIRRFQPASLKVMTMV Chrysemys_picta_bellii_Dact3 MSERGRLRGWLEGSLAGLCELHLLRERQERRVRQALPEEQLLPGLMWELEQQVGGLRLYETDSWPSSGF-G--DSS---------------AESRGSASERPKSVGEVAVRSPRLLPR----DSLDPFLYPSPLHAVAMQNPLLKVESYISRLIRRRSRKPRTSLEPARSVCVKAQYIPAHAKKKKGRRPRKKCREEARKSQENSLLDRERQRRPRKWRSTAEICQEEVRRRRRSGSD---S-ECRAEEG---YGDSESSLSEGGSPTFST-SSDTDESSGLVWPQQLRPKVFVKIKASHALKKKIMRFRSGSLKVMTTV Chrysemys_picta_bellii_Dact4 MGDRVRIGERLQASLAGILELGLLREMQKGTVESALGQRQVGNTPAALRTTGSSEQLLLEADSRPSSGFYETSEMG--SLSNSSTSMHSECDEATVRAARRPVSTGDLSA--PQYKCDLVSRSTSEIYHYPSPLHAVALQSPLFQLDRYIAKLVLRYR---RTE-PGLKSVC----------------------------REPEGVGSRELRRRPHKWASVLEISSQA-GR-EPP---LAFSTDSGSQLEPQREGSSASS---LSEV-AVSLNGD-------WRLRQLMAFKLHRTRSFKELKRMVSRSLRPLAPKASGA Danio_rerio_dact1 MGERVRARERLDATVAGLTELEYLRQRQELLVRSVLLRKQLLRGLIQELDRQISDLRLDETDSRPSSGFYDLSDGASGSLSNSSNSVFSECLDTSLCSEGRLKPADDPDVRSSKFHCDLIAKNGNDVYRYPSPLHAVAVQSPVFKLDSYIFGLLQRRARKPRTSIDPKRSLCVSAQYIPAGIKGKKSRKHRRRTRDESKKSIEGRILHHEKPKYKRRPRGLHEIPYEEARRRRKRESDSEYSAECTSEDEYTTFGDSESSASEADYVAESSTSSDSEGSAGVNWRQISAQKAFVKIKASHNLKKKILRFRSGSLKLMTTV Danio_rerio_dact2 MGDRGRTGERLHAALAGLQELHFLRDKQSAMVHWALLKQQLLRGLKQQLDQQITELKLDESDSRPSSGFYELSDGGSGSLSNSCTSVYSESDESTAQARQRPVSTGDLFPCSQKYQSNLVSSNGTEVYRYPSPLHAVALQSPIF-SVGYINKLLQRSSSKRIETVSQMNSL-QSAQFVPAATKVKRKKFCTRT--DLGKVSCDCSCNAPEAKKKPRKWPSSSEIPLPPN--RKMVRSESEYSAECSSDGEYTTFGDSESSQGSQTA-SDSSLSLDEED-LLLVWAQAARSSAACRIKASRALKKKIRRFQPASLKVMTLV Danio_rerio_dact3a -EERGRNKERLEAGLTWLCELEILKQRQESLVLGALLRRQLLQLLMLALQQQLSEMRVDDLESPSSSGFYDQSESLSPLRSCSS------P------SCHRPRSM-DAMLRSPEEEEEDEDSS---QWVSDQMADGHESFTPDMRVETYILGLLQRR--T------------VYTERRATHNHCVVSRLLRRRG-EEATKSREDSCVGRDYPPSQRLWCSSADLSQEED--EFRNH--QE-------ME-ASTTNGSDSSLSETFSPGTSSVSSDSDESGGLVWPQQLNPNAVVKIKASHALKKKIMRFRSGSLKLMTTV Danio_rerio_dact3b MSERGRQKQRLELSLAGICELELLKRRHQALIISALP----TPSLMKLLQHQVGELKVDDGE-RAGAGFSEGPLDSSSG----------EI------LTERPKSAGDV-VRSPSED-E--------PWIWQPI-----------HVETYILGLIQRRSRKPRTSLEPARSLSVNAQYIPA--PTYKSSKPRKKCRED-KKAQENSLLERDKARRSRRWRSTQELSQDEARRRRRPV------PQP--LRDYT-PGESESSLSEAESPGSSSLSSDSDGSGGLVWPQQLQPKAFVKIKASHALKKKILRFRSGSLKVMTTV Danio_rerio_dact4 MGERVRIGERLKATLAGIMELDLLRGRQLEMVDAVLRGQQ-STSS-TLSWDVPSD-LL--SDSRPSSGFYSVS--GS-SLSDSCFSVSSEADHSATH--RRPFSTGDLDG--PKFCADLVSRKTKEVYPYPSPLHAVALQSPLFQLEQYINRLVHQHHESR--GPTGERSLSLDSERERGTTRLF---SDCGSPRNSPHNHSPRLLSSRE--KFW-SW-DSRSSSLRL-RRRSQG---WRSSFEIRA-RNRK-EEKHHSSTASLFHLSQS-LEGSSH-----SLS---PPAPLTRSRSFRDLGRKVFGSMRSLSFNKNHK Danio_rerio_dact4r MG-RKRIRDRFCATVAGLLELEVLRVKHKVMVETALKLKRSVVL---CSSRSSED-LL-ELQSRSSSGFCESH-----SIPSTCEDSVSSF--------AIPEV----DPVDPNYRSDLP-GH-QGIYRYPSPLHAVALQSPLYGLEEVILKRARVQ-NGD---RHCNKSL----------------------------------------------------------------------------------------------------------------------------------------------------- Gallus_gallus_Dact1 MAERQRTRERLEATLAGLGELEYLRQRQELLVKSLLLRRQLLRGLLQELDKQISDLRLDETDSRPSSGFYELSDGASGSLSNSSNSVFSECLEATLNSDGRPKSA-DLEVRSPKYQCDLVSKNGSDVYRYPSPLHAVAVQSPMFRIDGYILSLVQRKTRKPRTSLDPKRSMCVNAQYIPATVKLKKHRKGKKKCRDELKKLQESGLQGREKPKHKRRWKSSAEISYEEARRRNRRDSDSEYSAECTSEDEYTTFGDSESSLSEVEFVGESTTTSDSDESGGLIWSQFVNAKAFVKIKASHNLKKKILRFRSGSLKLMTTV Gallus_gallus_Dact2 MGDRGRVGERLQAALAGLQELQVLREQQRELVRAALLKEQLLRGLKDQLDQRISELKLDDSDSRPSSGFYDLSDGGSCSLSNSCTSVYSESDETTVHSRPRPVSTGDLQPCAHKFQNDLVSKNGIDVYPYPSPLHAVALQSPLF-PGGYINKLLQLTR-ANERISIIPKQL-RAAQFVPAATKVKKRRKARRLPAEWSRRSCESSLFSLENKKKQRKWQSTVEISAKTHPRRRVLRSDSEYSAECTSEGEFTAFGDSESSESDSDD-NSSSLALDYDEG--LIWPEGSPPPKICRIKASKALKKKIRRFQPASLKVMTMV Homo_sapiens_Dact1 MTERQRTRERQEATLAGLAELEYLRQRQELLVRGALLRKQLLRGLLQELDKQISDLRLDETDSRPSSGFYELSDGASGSLSNSSNSVFSECLEATLSSDGCPKSA-DLEVRSPKYQCDLVSKNGNDVYRYPSPLHAVAVQSPMFKMDGYILSLVQKKTRKPRTSVDPKRSVCVKAQFIPGHMGVKKHRKTRKKCRDDLKKGPEAGVPGREKPKHKRRWKSSAEISYEEARRRGRRESDSEYSAECTSEDEYTTFGDSESSVSEGEFVGESTTTSDSEESGGLIWSQFVHPKTFVKIKASHNLKKKILRFRSGSLKLMTTV Homo_sapiens_Dact2 MGDRRRLGARLRAAFAGLQELQGLRATQQERVRGALLQEQLLRGLKDQLDLQISKLQLDDSDSRPSSGFYEMSDGGSCSLSTSCASVCSDHDETTV-FWPRPVSTGDLQLCGPKYRQDLVSQGGREVYPYPSPLHAVALQSPLFRARAYIDRLLHL-WKEGEQGP---SRL-SGPSFAASE---KKRSRPEQPSLEWGRRSCESTLYPFEARRKHRRWQSTVEISARARPRRRGP-SESKHSAECTSEGEHTTFGDRESSSSDEEGGRDCDLALGYVAA--LAW----SPPKLCRIKASKALKKKIRRFQPTALKVMTMV Homo_sapiens_Dact3 MSERGRLRGWLEGSLAGLCELHWLRERQEYRVQQALLEEQLLPGLVWDLGQQLGDLSLEEQESGRSSGFYE--DPSSTGP-DSPPSTFCD-SEPRGIASERPKSLGDAVVRSP--------RAG--PFLTPSPLHAVAMRSPRPPLDGYISALLRRRRGQPRTSPDGPRSVRVKAQYIPGGARRKRGRRPRRRGRE-ARRSQETSLLERERPRRGRRWRSTAEIDAADGRRPRP--SD---S-ECLGG--G--YGESESSASEGESPAFSSASSDSDGSGGLVWPQQLGPKVFVKIKASHALKKKILRFRSGSLKVMTTV Latimeria_chalumnae_Dact1 MSDRQRIRERLEATLAGLGELEYLKRRQELLVRSVLLRKQLLRGLIQELDKQINDLRLDETDSRPSSGFYELSDGGSGSLSNSSNSVFSECLDSSLGTDGHPKSA-DLEVRSPKYQCDLISKNGTDIYRYPSPLHAVAVQSPMFKLHNYIFSLVQRRARKLRTSLDPKRSICVNAQYIPATVKVKKHRKARKKCRDDSKKSQDSHHPGREKPKYKCRWKSSAEISYEESRCRRRRESDSEYSAECTSEDEYTTFGDSESSFSEVDFVGESTTSSDTDESGGLVWPQFGAVKNFVKIKASHNLKKKILRFRSGSLKLMTTV Latimeria_chalumnae_Dact2 MADRSRVGQRLQAALAGLQELQLLRERQGGVVQEALLKEQLLKGLKQQLDQQISELKLDESDSRPSSGFYELSDGGSCSLSNSCTSVYSECDETTVRFRQRPVSTGDLQSYGQKYQSDLVSKNGGDIYLYPSPLHAVALQSPLF-PSGYINKLLQLNK-VNIRGFTPQKSS-KTAKFVPAATKVKRRRKPRRLTAQRGRRSCESTLYSSETKKKQRKWQSAVEISVKAHPKRKVLRSDSEYSAECTSEDEYTTFGDSESSESDSDAT--SSLTLDYDDT--FVWPEASHTPKLCRIKASKALKKKIRKFQPASLKVMTMV Latimeria_chalumnae_Dact3 MNERSRNKERLEASLAGLCELQFLRQRQEYLVQKALLKRQLLKGLISQLEQQVGELQLETLDSQPSSGFSELSDGPSPAVSDSSTSAFGECAEARINANERPKSVGDLHVRSPKYQCDLVSRDGMDTFSYPSPLHAVAMQSPMLKVENYIMGLIQKRNRKPRTSLEPKRSLCVNAQYIPANVRNKKNRKPKKKCREE-RKSQENSLLDRERQRRQRKWRSTVEICQDEAKRKKRPPSDSEYSADCCAEDDYTMFGDSESSLSEVESPGFSTCSSDTDESGGLVWPQQVQPKVFVKIKASHALKKKIMRFRTGSLKVMTTV Latimeria_chalumnae_Dact4 MGDRIRIGERLQASLAGILELEVLKTKQKELVEKATKGQQVGTLQPPIATSTSSEILDLESDSRPSSGFYEVSDSGSCSLSNSCTSVYSEGDEAAVRVTRRPFSTGDLDS---KYKCDLISRNTNEVYHYPSPLHAVALQSPLFKLDKYISKLVLRYKHMRRSE-LSLKSIC----------SD-DSN-------------------SRELRKKPQKWMSVLEISNRT-SQRK-----RAFSTDCPSQTDNTTLYGSESS---LSEVSCTSLNRE-------LIHEDRNGIQLYRTKSFKELKKRVSRSMRPFSFKGTSS Lepisosteus_oculatus_Dact3 MSERSRNKDRLEASLAGLCELELLKQRQEYLVLSALLRRQLLKALMASLEQQVGELRVDVGDSRPSSGFYELSEGPSPGLSDSSVFR--EFSDARVSASERPKSVGDLSVRSPAAEED--------RWPWDPPYLGEFEEDQLYRVENYILGLIQRRARKPRTNLEPKRSLCVSAQYIPASSSQRKSRKGTKKCREDTRKSQENSLFDRDRQRRQRKWRSTLEISQDEGRRRKRQPTDQERAPLC--EEGYPTLGDSESSLSEADSPGSSSLSSDSDESGGLVWPQQLQPKAFIKIKASHALKKKILRFRTGSLKVMTTV Lepisosteus_oculatus_dact1 MLDRWRTRERLEATLAGLGELEYLRQRQELLVRSVLLRKQLLRGLIQELDRQISDLRLDETDSRPSSGFYELSDGTSGSLSNSSNSVFSECLDTSLGADGQPRPAGELEVRSPKYQCDLVARNGSDVYRYPSPLHAVAVQSPMFRLDHYILGLLQRRARKPRTSIDPKRSICVSAQYIPAGVKVKKTRKPRKKCRDDAKKSHDSSLAGREKPKYKRRYKTIAEVPYEEARKRRKRESDSEYSAECTSEDEYTTFGDSESSLSEVDFVGESTTSSDSDESGGLVWPQFGAQKAFVKIKASHNLKKKILRFRSGSLKLMTTV Lepisosteus_oculatus_dact2 MGDRGRVGERLQAALAGVQELHLLKERQSGMVQWALLKEQLLRGLKQQLDQQISELKLDESDSRPSSGFYDLSDGGSVSLSNSCTSVYSECDEITVQARPRPVSTGDLYSSGKRYQSNLVSRNGSDVYQYPSPLHAVALQSPIF-PDGYIYKLLQHKK-GCCQV-VFLKLK-QSAKFVPAATKVKKRRNLKGLSAETAKESCQSSLYLPESKKRQRKWQSVVEISTKPSHLRKMMRSESEYSAECSSEGEFTAFGDSESSESSSDGSSSLSLNSE-D---MLVWAQSTRPPPACRIKASKALKKKIRRFQPAALKVMTMV Lepisosteus_oculatus_dact4 -----------------------------------------PGADCAVSWDALAL-PDPTCDSRPSSGFYSVS--GS-SLSASCGSVCSEGDHSAAQ--RRPVSTGDLDG--PKFCSDLVSRKTKEVYPYPSPLHAVALQSPLYRADRYIGQLLRRYRSLSALD-PGAKSVC---------------------------------------------------------------------------------------------------------------------------------------------------- Lepisosteus_oculatus_dact4r MEDRMRIKERFQASLAGLMELELLKSQHQEMVEAALYRYQLVLTPGLQSSLSSEH-LL-DSKSRASSGFCDDD--G--SLSNSCASLCSEAEEGRFG--WVPSSP-DLDQVSPRYRLDLVSHKTKEAYYYPSPLHAVALQSPLYRLEKFISKLVTRWH-----CSASSRSLS---------------------------------------------------------------------------------------------------------------------------------------------------- Lethenteron_japonicum_dactA MGAPRLTAIRLESALAGIRHLESLKRRQGALVRAALVGPHLQHGTAQLLEQRFCELGLRESDSRASSGFYELSDAGTGSLSTSCNSVFSDLTELQAASERRPLSTGDLTVRSHSPPR-LTVLDSVEPG-APSAHPAMTPDTRS-RGDAALPITKQQQQ--------------VM-MAIPE-VKAKRCRGRQKRCREDQTASQDNSIVAAARQRRLRRWRSTVEICQGAARRRRVWLSDSEYSAECATDDD---EEDTDCDVDDAEDAGGGGGPADVAEGGGLTGSTATVPAQICRIKASHALKKKILRCRSGSLKLMTTV Lethenteron_japonicum_dactB MSERSRASERLEASMAGLAELELLRRRHEALVRGVLMKEQLLPGLLRHLNEQFSELKMDETDSRPSSGYYDLSDG---SLSNSCNSIFSDCPELPLFARERPLSSGDLGTGPARYVSDLTSRDGSDVYRYPSPLHAVAIQSPLFRVSGYICSLLDRKRGKPKHEED--LDSC---TAIKSNLGTKRPP---PRARDEMPAERCRDVV---GVKRL-----SRELVQSHGRRAPRVRSESEYSAECTSEDEHTTATDSDSDGDAGGFSGSSADEEDDVDNGGLAGRRGGGQHAACRIKASRSLKKKMMHFRSGSLKVITTV Lethenteron_japonicum_dactC -----------------------------------------GLGKPCALERPLSELRVDDVDSRPSSGFYSMSEDGSLSLSNSCSSISSSGVELPSFGPSRPQSS-DL-LDVPRFRCDLRSRDGSEVYRYPSPLHAIAMQSSAFKVTAYIAALLKRRGARPASIADD-DPHV-V-A---------------RICKHGRDDRHLREGVEREYRRRLRRWCSTMEIARGGGMRARAWS-----SAIA--SED---------DADDADEA----AGRLPADG--------------CRVSVPSAVKRKIRQRIADAAKTSTDV Lethenteron_japonicum_dactD ----------------------------------------------------------------------------------------------------------------PRFARDVPSLDGSGLYRYPSALHAVAIQSPALKPDDYIARLLERRKLRSPPLPLPASS---------------------RRCKSLPRAG------AAE-----RRLCRAGDAGGDWADRSAFHDGFADGHADGFHPRGGNPRGDARPQQGKASTGGWGRGVAGPQAGGG--WWGAGVPGPAGLDG-PAARRRALLRCHSVEPALTTTV Monodelphis_domestica_Dact1 MTERQRTRERLEATLAGLAELEFLRQRQELLVRSVLLRQQLLRGLLQELDKQISDLRLDETDSRPSSGFYELSDGASGSLSNSSNSVFCECLETSLSSDGHPKST-DLEVRSPKYQCDLVSKNGNDIYRYPSPLHAVAVQSPMFKIDGYILSLVQKKTRKLRTSVDPKRSVCVNAQFIPGNVRLKKHRKSRKKCHDDFKKSQEAGLSGREKPKHKRRWKSSAEISYEEARRRNRRESDSEYSAECTSEDEYTTFGDSESSLSEVEFVGESTTTSDSEESGGLIWSQFVSHKTFVKIKASHNLKKKILRFRSGSLKLMTTV Monodelphis_domestica_Dact2 MGDRSRVRERLHAALAGLQELQVLRDKQQALVSGALLKEQLLRGLKDQLDQQISELKLDDSDSRPSSGFYDLSDGGSCSLSNSCTSVYSESDETTVHFKPRPVSTGDLQPCGLKYQSDLVSKSGNDIYPYPSPLHAVALQSPLFPPGGYIDKLLQLTRGVSERGSSISRQL-TGAQFVPGSAKMKKRRRPRRLPAEWNRRSCESSLFSFEARKKQRKWQSTVEISAKTHPRRRILRSDSEYSAECTSEDDYTAFGDSESGDSDSDGASESSLTLDYEEA--LIWPKAIHPPKICRIKASKALKKKIRRFQPASLKVMTMV Monodelphis_domestica_Dact3 -----------------------------------------LPGLMWELGQHLGELSLDEEDVGLSSGFYE--GPSPTP--DSPPSTFGD-SEPRGAASERPKSLGEASVRSPGGVATS--------FLAPSPLHAVALQSPRLHLESYISGLLRRRRGQPRTSPPAPRSARVKAQYIPAVARKGRGRRPRRKGRD-GRRSQENSLLERERPRRPRRWRSTAEISGEEARRAVRGGSD---S-ECRAVGGYG-YGESESSASDAESLAFSSASSDSEGSGGLVWPQQLQGKVFVKIKASHALKKKILRFRSGSLKVMTTV Oreochromis_niloticus_dact1 M-DRLAVRERLEASVSGLGELELLRRRQEVLVRAALLRKQLLRGLIQELDRQISDLQLDEPDSRPSSGFYDLSDAASGSLSNSSNSIFSEC---------------ELGVCSPKYHCDLVAQNGNDVYRYPSPLHAVVVQSPAFRLDSYIYSLLQRRARKPRTSIDAKRSLCVTNRYVPAGFKVKKTNRRRRSC-ED--KISKHHHHGRDKPKYKRRLRAMMEVSYDEARRRRRKESDSEYSAECTSEDEYTAFGDSESS--EEEYVEESTNTSDTEESGGMGRGRGQAQKAFVKIKASHNLKKKILRFRSGSLKLMTTV Oreochromis_niloticus_dact2 MVDRSRVGERLQAALAGLHELQLLRDRQSDMVNWALLKQQLLRGLKQELDQQISELKLDESDSRPSSGFYELSDGGSCSLSNSCNSVYSESDENTTQARPRPVSTGDLHPCNKKFQRNLESRIGTEKYHYPSPLHAVALQSPIFLTH-YIDNLLQRSL-AGSQTLIEKELM-SPAKFVPAASKLKKRKRTRKG--DHAKNSGDSSLYSLERKKRQAKWPSDADMFQASC--APMQM--SEYSAECSSEGENTTFGDSESSQSFQSF-SDSSLSLYEGEQADMVWAEAARPPAACRIKASRALKKKIRRFQPASLKVMTLV Oreochromis_niloticus_dact3a MTERSRTKERLEACLAGLCELELRRQRQECLVLGALLRRQLLQGLMQALEQQVGELRIDTGNSRPSSGFYESSEGQSPGKSCTT-----EP------TSDRPKSVGDPALRSPAM--D--------SWQWDLSGDNGTWEQQPEKVEGYILSLIQRHTRQPRTTFDPYGSLHVSAQYIPGPNQQPNQVKYRKKNHE-RKKSQENSLLERPQNQNQRRWRSNLELSQDEGRRRKRHGQDQESAPLC--GEEYGGPAESESSMSEVYSPASSSLSSDSDESGGLVWPQQLQPKAFVKIKASHALKKKILRFRSGSLKVMTTV Oreochromis_niloticus_dact3b MKGRSRNKERLQASLAGLCELELLKQRQESRVLCALESYGLLQGLSASLEEQVAELKVDNLDASQISG-------------------------------------GKASTCSP---KE-TKK----PYMSTLTRHAIVT-----KVETYIFGVIQRRTRKPRTSLDAVRSLCVSAEYIPGYHTHHKSNPPRKKCREDGRKSQENSLQERDRSKKQRRSLSTLELSQDEARRRKRPTEFLERAQLC--TDDYSHQVESESSMSEADSPDSSSLSSDSDESGGLVWPQQLQPKAFVKIKASHALKKKILRFRTGSLKVMTTV Oreochromis_niloticus_dact4 MGERVRIGERLKATLAGVLELEVLRCKHLEMVDAALRRQQVSSSS-TLSWDAPSD-LL-DSDSRPSSGFYSVS--GS-SLSDSCYSVSSDAEQVPVC---TPVSG-DLESIPPRYCTDLMSRRTKEVYSYPSPLHAVALQSPLFQLEQYISRLARQYH-SDLTSPTHGKSLSLDTDTAGEAQSDYPQ-SSSHIPSYS-DLRSPRPLQSHKS-KLW-DDGERRSSSLRL-RRRSQG---WVSSLDVEG-VRRAKEDKRLSSTASLFNLSQS-LEGSCH-----SLS---PPLPLQRSRSLRDLGRKVFGSMRSLSLKQKSS Petromyzon_marinus_dactA -------------------------------------------------------------------GFYELSDAGTGSLSTSCNSVFSDLTELQVPSERRPLSTGDLTVRSHSPPW-LTVLDSAESV-APSANPAMTPDTRS-RSDAALPIAKQQ----------------VM-MAIPE-VKAKRCRGRQKRCREDQTASQDNSIVTAARQRRLRRWRSTVEICQGAARRRRVWLSDSEYSAECATDDD---EEDTDCDADDAEDAG-GVGPANVAEGGGLAGSLAS-------------------------------- Petromyzon_marinus_dactB -------------------------------------------------------------------GYYDLSDG---SLSNSCNSIFNDC--------------GDLGTGPGRYVSDLTSRDGSDVYRYPSPLHAVAIQSPLFRVSGYICSLLDRKRGKPKHEED--LDSC---TAIKSNLGTKRPP---QRARDEMPA-----------------------------------------------------ATDSDKRRGRRRLQGFSAEEEDDVDTGGLAGRRGGGQHAACRIKASRSLKKKMMHFRSGSLKVITTV Petromyzon_marinus_dactD ----------------------------------------------------------------------------------------------------------------PRFARDVPSLDGSGLYRYPSALHAVAIQSPALKPDDYIARLLERRKLRPRRTP----------------------------------------------------------------------------------------------------------------------------------------------------------- Takifugu_rubripes_dact2 MGDRSRVGERLQAALAGLQELHLLKDRQSDMVSWALLKQQLLRGLKQQLDQQINELKLDESDSRPSSGFYELSDGGSCSLSNSCVSVYSECDESTTQKRPRPVSTGDLFLCKKKFQSNLVSRTGAEVYPYPSPLHAVALQSPIFQT--YIDRLLVRSF-TGPEDVLAVESV-SPAEFVPAATKVKRRKKARKG--EQVKFSGESSHSSLDRKKKQ----SDVEMFHLSC--AQMQM--SEYSAECSSEGENTTFGDSESSQSFLSF-SDSSLSLDEDYQVDLVWAEDSRPPSACRIKASRALKKKIRRFQPASLKVMTLV Takifugu_rubripes_dact3a MTERSRTKQHLEASLVGLCELELRKQRQECLVLGALLRRKLLKGLMQALEQQVEELRMDTGEERPCCGFCELNEAKSPRRVHAA-----EP------PNNRPKSVGDPILRSPTM--D--------SWQWDQVW----QQEPV-RVEGFIVGLIQRYARQPRTTLDTGHTPCASSCFIPGSNPRSIQKKSKKKYHE-RKKSQENSLQERHHANNIRRWCSNLELSQDEGKRQKRSGLDQERAPLC--EEDYAAPAESESSMSEVYSPASSSLSSDSDESGGLVWPQQLQPKAFVKIKASHALKRKILRFRSGSLKVMTTV Takifugu_rubripes_dact3b -KERSRNKERLEASLAGLCELELLKQRQESRVLSAL-LFSLLQYFDPSVKQHEAELSVR------LT--------------------------------------GEVFVRSP--ELD--RR-----WSSEAKKHATLA-----KIETYIFGLIQRRTRKPRTSLDAARSLCVNAKYIPASHSPHKPNS-RKKCREDVRKSQENSLQERDRNKKQRRWQSTLELSQDEARRRKRPPEYPERMHPC--SEDYHHQGESESSTSEADSPDSSSLSSDSDESGGLVWPQQLQPKAFVKIKASHALKKKILRFRTGSLKLMTTV Takifugu_rubripes_dact4 MGERVRIGERLKATLAGVLELEVLRCKQLEMVDAALRRQQVLSNS-TLSWDVPSD-LL-DSDSRPSSGFYSVS--GS-SLSDSSYSVSSDAEQIVLS---QPVQQ-DLDSFPPRYCMDLVSRRTKEVYSYPSPLHAVALQSPLFHLEQYITRLARQYHSSDLSAGTHGKSLSLDTDIAGETQSDYPQ-SSSHVPSYASDLHSPRPLQSHK--KIW-EEGERRSSSLKL-RRRSQG---WVSSLDVEA-VRSTKEDKRLSSTASLFNLSQS-LEGSCH-----SIS---PSMPLQRSRSLRDLGRKVFGSMRSLSLKRKPS Xenopus_tropicalis_dact1 MSERQRTRERLEATLAGLAELGYLRHRQELLVKSALLKKQLLRGLLHELDKQINDLKIDETDSRPSSGFYELSDGTSGSLSNSSNSVFSECLETSLNTDGQAKSADDFDVRSPKYQCDLVSKNGNDIYRYPSPLHAVAVQSPMFKMDGYILSIIQKKARKPRTSVDPKRSICVNAHYIPAIVKVKKHRKSKKKCREDVKKPNEPAVVPKDKPKHKRRWKSSAEISYEEARRRRQRESDSEYSAECTSEDEYTTFGDSESSLSEVEFVGESTTSSDTDESGGLIWSQFVTAKAFVKIKASHNLKKKILRFRSGSLKLMTTV Xenopus_tropicalis_dact3 MGDRGRLRHLLRSSLAGLCELKLLRDRQEIRVRRAL-----LDRQLWELERQLGELRLRENDNEN--V----------CEADG--MEASDVTEARLHANERPKSAGDISVRSP-------------------------------RAEGYILSLL-RR-RYLR---SA----RANASYTP-HPRRKKGHLP-RKCLEERKRSLETSLREGERAPPVRKWRSTAEISQEEESR------------------------DSEGEEEEEGE---------------LVWPLQLRPQMF-KVKASQALKKKIMRFHTGSLKVMTTV ; END; BEGIN TREES; TITLE Dact_genes_in_chordates_Puzzle; LINK TAXA = Taxa1; TRANSLATE 1 Homo_sapiens_Dact1, 2 Monodelphis_domestica_Dact1, 3 Gallus_gallus_Dact1, 4 Anolis_carolinensis_Dact1, 5 Chrysemys_picta_bellii_Dact1, 6 Xenopus_tropicalis_dact1, 7 Latimeria_chalumnae_Dact1, 8 Lepisosteus_oculatus_dact1, 9 Danio_rerio_dact1, 10 Oreochromis_niloticus_dact1, 11 Callorhinchus_milii_Dact1, 12 Homo_sapiens_Dact3, 13 Monodelphis_domestica_Dact3, 14 Anolis_carolinensis_Dact3, 15 Chrysemys_picta_bellii_Dact3, 16 Xenopus_tropicalis_dact3, 17 Latimeria_chalumnae_Dact3, 18 Lepisosteus_oculatus_Dact3, 19 Danio_rerio_dact3a, 20 Takifugu_rubripes_dact3a, 21 Oreochromis_niloticus_dact3a, 22 Danio_rerio_dact3b, 23 Takifugu_rubripes_dact3b, 24 Oreochromis_niloticus_dact3b, 25 Callorhinchus_milii_Dact3, 26 Petromyzon_marinus_dactA, 27 Lethenteron_japonicum_dactA, 28 Petromyzon_marinus_dactB, 29 Lethenteron_japonicum_dactB, 30 Lethenteron_japonicum_dactC, 31 Lethenteron_japonicum_dactD, 32 Petromyzon_marinus_dactD, 33 Homo_sapiens_Dact2, 34 Monodelphis_domestica_Dact2, 35 Gallus_gallus_Dact2, 36 Anolis_carolinensis_Dact2, 37 Chrysemys_picta_bellii_Dact2, 38 Latimeria_chalumnae_Dact2, 39 Lepisosteus_oculatus_dact2, 40 Danio_rerio_dact2, 41 Takifugu_rubripes_dact2, 42 Oreochromis_niloticus_dact2, 43 Callorhinchus_milii_Dact2, 44 Anolis_carolinensis_Dact4, 45 Chrysemys_picta_bellii_Dact4, 46 Latimeria_chalumnae_Dact4, 47 Lepisosteus_oculatus_dact4, 48 Danio_rerio_dact4, 49 Takifugu_rubripes_dact4, 50 Oreochromis_niloticus_dact4, 51 Callorhinchus_milii_Dact4, 52 Lepisosteus_oculatus_dact4r, 53 Danio_rerio_dact4r, 54 Branchiostoma_floridae_dact; TREE 'Dact proteins - TreePuzzle' = [&R] (((28:0.09512999999999994,29:9.999999999843467E-6):0.7632400000000001,(26:0.016690000000000094,27:0.06144000000000016):0.8960699999999999,(((35:0.07667000000000002,37:0.022359999999999935):0.02864,33:0.43670999999999993,34:0.14195000000000002,36:0.09993999999999992,38:0.2254799999999999):0.14329999999999976,((41:0.12407999999999997,42:0.13795000000000002):0.22032999999999991,39:0.21345999999999998,40:0.26622999999999997,43:0.48673999999999995):0.11392999999999986):0.4250600000000002,(((9:0.1306799999999999,10:0.2525599999999999):0.12348999999999988,((1:0.06631000000000009,2:0.039120000000000044):0.05201000000000011,3:0.03865000000000007,4:0.11533000000000015,5:0.022909999999999986,6:0.14595000000000002):0.11594999999999978,7:0.09532999999999969,8:0.10444999999999993,11:0.15812999999999988):0.17298999999999998,((12:0.16434000000000015,13:0.12927):0.34872999999999976,(((20:0.23459999999999992,21:0.1413500000000001):0.15400999999999998,19:0.6257299999999999):0.13851999999999998,(23:0.14982000000000006,24:0.16595000000000004):0.21016999999999997,18:0.16935999999999996,22:0.31800000000000006,25:0.44665):0.28166999999999986,(14:0.15900000000000025,15:0.06720000000000015):0.19145999999999974,16:0.6662399999999999,17:0.18991999999999987):0.24131999999999998):0.1930200000000002,(((44:0.31362,45:0.20452000000000004):0.24652999999999992,46:0.25602000000000014):0.10989000000000004,((52:0.3608100000000001,53:0.94276):0.24164000000000008,51:0.41825):0.2328699999999999,(((49:0.09582999999999986,50:0.0570400000000002):0.27939999999999987,48:0.1735000000000002):0.28681,47:0.3427):0.5002899999999999):1.09711,30:1.29256,31:1.96277,32:0.6193900000000001):0.878885,54:1.75777); END; BEGIN TREES; TITLE Dact_genes_in_chordates_PhyML; LINK TAXA = Taxa1; TRANSLATE 1 Homo_sapiens_Dact1, 2 Monodelphis_domestica_Dact1, 3 Gallus_gallus_Dact1, 4 Anolis_carolinensis_Dact1, 5 Chrysemys_picta_bellii_Dact1, 6 Xenopus_tropicalis_dact1, 7 Latimeria_chalumnae_Dact1, 8 Lepisosteus_oculatus_dact1, 9 Danio_rerio_dact1, 10 Oreochromis_niloticus_dact1, 11 Callorhinchus_milii_Dact1, 12 Homo_sapiens_Dact3, 13 Monodelphis_domestica_Dact3, 14 Anolis_carolinensis_Dact3, 15 Chrysemys_picta_bellii_Dact3, 16 Xenopus_tropicalis_dact3, 17 Latimeria_chalumnae_Dact3, 18 Lepisosteus_oculatus_Dact3, 19 Danio_rerio_dact3a, 20 Takifugu_rubripes_dact3a, 21 Oreochromis_niloticus_dact3a, 22 Danio_rerio_dact3b, 23 Takifugu_rubripes_dact3b, 24 Oreochromis_niloticus_dact3b, 25 Callorhinchus_milii_Dact3, 26 Petromyzon_marinus_dactA, 27 Lethenteron_japonicum_dactA, 28 Petromyzon_marinus_dactB, 29 Lethenteron_japonicum_dactB, 30 Lethenteron_japonicum_dactC, 31 Lethenteron_japonicum_dactD, 32 Petromyzon_marinus_dactD, 33 Homo_sapiens_Dact2, 34 Monodelphis_domestica_Dact2, 35 Gallus_gallus_Dact2, 36 Anolis_carolinensis_Dact2, 37 Chrysemys_picta_bellii_Dact2, 38 Latimeria_chalumnae_Dact2, 39 Lepisosteus_oculatus_dact2, 40 Danio_rerio_dact2, 41 Takifugu_rubripes_dact2, 42 Oreochromis_niloticus_dact2, 43 Callorhinchus_milii_Dact2, 44 Anolis_carolinensis_Dact4, 45 Chrysemys_picta_bellii_Dact4, 46 Latimeria_chalumnae_Dact4, 47 Lepisosteus_oculatus_dact4, 48 Danio_rerio_dact4, 49 Takifugu_rubripes_dact4, 50 Oreochromis_niloticus_dact4, 51 Callorhinchus_milii_Dact4, 52 Lepisosteus_oculatus_dact4r, 53 Danio_rerio_dact4r, 54 Branchiostoma_floridae_dact; TREE 'Dact proteins - PhyML' = [&R] ((((((((((5:0.01785476759999982,(4:0.10412292220000019,3:0.022153581300000003):0.017765966099999808):0.015689729700000044,(2:0.0401879259000002,1:0.06583305020000019):0.042679658499999995):0.029727542799999895,6:0.11541216289999978):0.06795737990000017,7:0.07917762870000011):0.02646509340000014,((10:0.2516668901000001,9:0.13299656680000016):0.0926848161999998,8:0.05571501430000003):0.0428651577000001):0.0503264134000001,11:0.09645228579999987):0.14077548340000012,((17:0.1244364351999998,(((16:0.5925309883000001,(13:0.12610093860000005,12:0.14482319109999997):0.14472248369999985):0.07461886219999991,14:0.16700996849999994):0.02049766799999997,15:0.06412020520000006):0.24346172160000012):0.041720836500000136,((((25:0.3179426379999999,19:0.546213287):0.05653259430000013,(21:0.13650447500000018,20:0.2399499613999998):0.16535307580000014):0.08142909469999982,(22:0.2838728614999999,(24:0.16617065249999996,23:0.14814666209999983):0.16517666649999985):0.047342904000000186):0.07269933280000007,18:0.10382221189999985):0.2130953085999998):0.1630059545):0.12527480329999996,((29:1.000000082740371E-10,28:0.09535510019999993):0.5778670672000001,((27:0.059265050400000074,26:0.019903745300000164):0.6983634158000003,((32:1.000000082740371E-10,31:0.11881523909999991):1.3138057403000003,30:0.7174833493000001):0.32262065070000023):0.0780572020000001):0.15639064089999977):0.055400062599999966,((((38:0.13011737759999997,((33:0.42989728120000015,34:0.07444176020000004):0.0512524592000001,((37:0.018235522999999976,36:0.09722201880000014):0.010141057899999861,35:0.07515928270000005):0.024048153299999875):0.10320015199999988):0.0713946955,(((42:0.13905923620000005,41:0.12228707269999983):0.16766020820000005,40:0.18887494370000013):0.1239601653000002,39:0.1719000772000001):0.10201388459999983):0.04984771780000008,43:0.3830722937000002):0.10200235300000005,(51:0.44974062690000016,(46:0.2428796071999999,((45:0.19673747050000046,44:0.3105528498000001):0.21209405159999983,((53:0.9327113624000001,52:0.3268535772000001):0.35146091859999995,(47:0.3457821489999997,(48:0.18186939980000005,(50:0.05093711329999984,49:0.09573971789999991):0.25127774989999985):0.24627526450000037):0.33277293409999986):0.22660814259999995):0.05134460249999995):0.4091703675999998):0.3888161159000001):0.2599521426):0.7966113914,54:1.5932227828000003); END; BEGIN TREES; TITLE Dact_genes_in_chordates_MrBayes; LINK TAXA = Taxa1; TRANSLATE 1 Homo_sapiens_Dact1, 2 Monodelphis_domestica_Dact1, 3 Gallus_gallus_Dact1, 4 Anolis_carolinensis_Dact1, 5 Chrysemys_picta_bellii_Dact1, 6 Xenopus_tropicalis_dact1, 7 Latimeria_chalumnae_Dact1, 8 Lepisosteus_oculatus_dact1, 9 Danio_rerio_dact1, 10 Oreochromis_niloticus_dact1, 11 Callorhinchus_milii_Dact1, 12 Homo_sapiens_Dact3, 13 Monodelphis_domestica_Dact3, 14 Anolis_carolinensis_Dact3, 15 Chrysemys_picta_bellii_Dact3, 16 Xenopus_tropicalis_dact3, 17 Latimeria_chalumnae_Dact3, 18 Lepisosteus_oculatus_Dact3, 19 Danio_rerio_dact3a, 20 Takifugu_rubripes_dact3a, 21 Oreochromis_niloticus_dact3a, 22 Danio_rerio_dact3b, 23 Takifugu_rubripes_dact3b, 24 Oreochromis_niloticus_dact3b, 25 Callorhinchus_milii_Dact3, 26 Petromyzon_marinus_dactA, 27 Lethenteron_japonicum_dactA, 28 Petromyzon_marinus_dactB, 29 Lethenteron_japonicum_dactB, 30 Lethenteron_japonicum_dactC, 31 Lethenteron_japonicum_dactD, 32 Petromyzon_marinus_dactD, 33 Homo_sapiens_Dact2, 34 Monodelphis_domestica_Dact2, 35 Gallus_gallus_Dact2, 36 Anolis_carolinensis_Dact2, 37 Chrysemys_picta_bellii_Dact2, 38 Latimeria_chalumnae_Dact2, 39 Lepisosteus_oculatus_dact2, 40 Danio_rerio_dact2, 41 Takifugu_rubripes_dact2, 42 Oreochromis_niloticus_dact2, 43 Callorhinchus_milii_Dact2, 44 Anolis_carolinensis_Dact4, 45 Chrysemys_picta_bellii_Dact4, 46 Latimeria_chalumnae_Dact4, 47 Lepisosteus_oculatus_dact4, 48 Danio_rerio_dact4, 49 Takifugu_rubripes_dact4, 50 Oreochromis_niloticus_dact4, 51 Callorhinchus_milii_Dact4, 52 Lepisosteus_oculatus_dact4r, 53 Danio_rerio_dact4r, 54 Branchiostoma_floridae_dact; TREE 'Dact proteins - MrBayes' = [&R] ((((((((((33:0.3743794166722796,36:0.05690352364295981):0.04033320931303486,37:0.017317209266848765):0.014060966229098693,35:0.07245017410201493):0.025146580877038582,34:0.10555223562185856):0.08769091058466061,38:0.11713199143922459):0.07077111912438405,(39:0.1591936538546257,(40:0.16846864812837703,(41:0.11446480597983788,42:0.12268647228334317):0.14852639989028038):0.10952568509808192):0.0893671240592091):0.04765743092233721,43:0.32966151670757937):0.09667746775707631,(((44:0.26412575893369317,45:0.17858500651519216):0.19480709298714083,46:0.20315041685063084,(47:0.2788312777824449,(48:0.15312991125597186,(49:0.08869924592783551,50:0.04752290792665104):0.22224449902558163):0.2356129570201908):0.3357188987401514,(52:0.3067434758521941,53:0.6910526043414289):0.24761737310413712):0.3152291603137394,51:0.2972857850776931):0.4171220454724289):0.23685890469266235,((((26:0.027472796244523368,27:0.05100871198125745):0.5934111418631138,(30:0.5875659215153355,(31:0.1145228303146899,32:0.01986039722670596):0.9220755658984576):0.30067432071311084):0.07734906962473254,(28:0.07637084947173212,29:0.009678566695822566):0.47820967386069757):0.14365368016631042,((((((12:0.12703649524728933,13:0.11257443593689609):0.12577186232923077,16:0.49856652399991797):0.07406718605752305,14:0.14673020775586143,15:0.059129419289515095):0.20906261672206128,17:0.11488562707592442):0.040990096776939655,(18:0.092801200509679,(((19:0.4699385986949447,25:0.2672463942294667):0.07087885105705682,(20:0.20613565368172093,21:0.12426950123774971):0.1423214982879788):0.07410053047825627,(22:0.259265389223319,(23:0.1382653770788289,24:0.14285629279497036):0.14602687185068408):0.04235900164937911):0.06610835392064685):0.19299537743836015):0.14714011574299057,(11:0.08710092886386445,((8:0.05298873222053224,(9:0.11143558719254631,10:0.21903392472210426):0.08522515907634842):0.040441138997697745,(7:0.07345728047023359,(6:0.10491208951307662,(((3:0.021811359447556633,4:0.09193183918241088):0.017409048166617147,5:0.019057558752079373):0.017048204184382687,(1:0.06275392523049872,2:0.03519391300332941):0.040831112851430706):0.029950097024881384):0.05654855693956451):0.027703044152675105):0.04128574624090442):0.122832316602981):0.10813699425405288):0.066610222340719):0.6391797561589785,54:1.278359512317957); END; BEGIN TREES; TITLE Dact_genes_in_chordates_IQT; LINK TAXA = Taxa1; TRANSLATE 1 Homo_sapiens_Dact1, 2 Monodelphis_domestica_Dact1, 3 Gallus_gallus_Dact1, 4 Anolis_carolinensis_Dact1, 5 Chrysemys_picta_bellii_Dact1, 6 Xenopus_tropicalis_dact1, 7 Latimeria_chalumnae_Dact1, 8 Lepisosteus_oculatus_dact1, 9 Danio_rerio_dact1, 10 Oreochromis_niloticus_dact1, 11 Callorhinchus_milii_Dact1, 12 Homo_sapiens_Dact3, 13 Monodelphis_domestica_Dact3, 14 Anolis_carolinensis_Dact3, 15 Chrysemys_picta_bellii_Dact3, 16 Xenopus_tropicalis_dact3, 17 Latimeria_chalumnae_Dact3, 18 Lepisosteus_oculatus_Dact3, 19 Danio_rerio_dact3a, 20 Takifugu_rubripes_dact3a, 21 Oreochromis_niloticus_dact3a, 22 Danio_rerio_dact3b, 23 Takifugu_rubripes_dact3b, 24 Oreochromis_niloticus_dact3b, 25 Callorhinchus_milii_Dact3, 26 Petromyzon_marinus_dactA, 27 Lethenteron_japonicum_dactA, 28 Petromyzon_marinus_dactB, 29 Lethenteron_japonicum_dactB, 30 Lethenteron_japonicum_dactC, 31 Lethenteron_japonicum_dactD, 32 Petromyzon_marinus_dactD, 33 Homo_sapiens_Dact2, 34 Monodelphis_domestica_Dact2, 35 Gallus_gallus_Dact2, 36 Anolis_carolinensis_Dact2, 37 Chrysemys_picta_bellii_Dact2, 38 Latimeria_chalumnae_Dact2, 39 Lepisosteus_oculatus_dact2, 40 Danio_rerio_dact2, 41 Takifugu_rubripes_dact2, 42 Oreochromis_niloticus_dact2, 43 Callorhinchus_milii_Dact2, 44 Anolis_carolinensis_Dact4, 45 Chrysemys_picta_bellii_Dact4, 46 Latimeria_chalumnae_Dact4, 47 Lepisosteus_oculatus_dact4, 48 Danio_rerio_dact4, 49 Takifugu_rubripes_dact4, 50 Oreochromis_niloticus_dact4, 51 Callorhinchus_milii_Dact4, 52 Lepisosteus_oculatus_dact4r, 53 Danio_rerio_dact4r, 54 Branchiostoma_floridae_dact; TREE 'Dact proteins - IQTree' = [&R] (1:0.064980290774614,2:0.039917797962323,(((3:0.02186877644119,4:0.102709909668011):0.01756,5:0.016787722134077):0.014444,(6:0.106745130979243,(7:0.076931631133353,((8:0.058086176729753,(9:0.131796603694295,10:0.25358036792405):0.090388):0.045283,(11:0.100760132390401,(((((((12:0.145306707118798,13:0.125613865073248):0.15078,16:0.605296896120852):0.067374,14:0.165523994020761):0.017235,15:0.066055809016916):0.2347,(18:0.104099431313181,(((19:0.614517093951564,(20:0.236399358554222,21:0.133095894100283):0.146869):0.070371,25:0.395208944565488):0.039193,(22:0.283850691653049,(23:0.145729192978913,24:0.16314220851681):0.155384):0.051748):0.077169):0.221377):0.038607,17:0.102469681129541):0.204072,((((26:0.021375767607566,27:0.057382539483541):0.713703,(30:0.734012542862526,(31:0.113988699881165,32:1.0E-6):1.386316):0.341314):0.078453,(28:0.094917550350111,29:1.0E-6):0.591815):0.17097,(((((((33:0.427823470443117,34:0.075370092679203):0.04936,(35:0.072012728728806,(36:0.095675927844876,37:0.018260675037709):0.011446):0.024323):0.105327,38:0.125519403571836):0.069257,(39:0.171525909734576,(40:0.18667272713983,(41:0.120943322087539,42:0.135685683836824)100:0.166726):0.117848):0.103759):0.043791,43:0.385219609154313):0.082357,((((44:0.31301636854165,45:0.198647409387937):0.219445,((47:0.349305408846539,(48:0.190629496931744,(49:0.093458003908905,50:0.055316398549683):0.249894):0.252629):0.351093,(52:0.340649024107813,53:0.938495946885609):0.36118):0.225864):0.059004,46:0.223286382793609):0.370236,51:0.482797519605017):0.464034):0.294735,54:1.654529924255039):0.052806):0.123453):0.135955):0.051176):0.022583):0.067908):0.034333):0.042597); END;