#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 20, 2024; 6:21 GMT TreeBASE (cc) 1994-2008 Study reference: Rivas E.B., Bódi E.C., Harakava R., Gregori F., & Goncalves M.C. 2014. Phylogeny and recombination analysis of Lily symptomless virus and Lily mottle virus from Brazil. Plant Disease, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S16007] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=17; TAXLABELS Lily_mottle_virus_AB054886 Lily_mottle_virus_FJ618539 Lily_mottle_virus_JN127341 Lily_mottle_virus_JQ361098 Lily_mottle_virus_KC430331 Lily_mottle_virus_KJ627226 Lily_mottle_virus_KJ627227 Lily_mottle_virus_KJ627228 Lily_mottle_virus_KJ627229 Lily_mottle_virus_KJ627230 Lily_mottle_virus_KJ627231 Lily_mottle_virus_KJ627232 Lily_mottle_virus_KJ627233 Lily_mottle_virus_NC001616 Lily_mottle_virus_S44147 'Rembrandt tulip-breaking virus AB674535' Tulip_band_breaking_virus_AB078007 ; END; BEGIN TAXA; TITLE Taxa2; DIMENSIONS NTAX=20; TAXLABELS Chrysanthemum_virus_B_AM765839 Lily_latent_virus_AJ131812 Lily_symptomless_virus_AJ516059 Lily_symptomless_virus_AJ780923 Lily_symptomless_virus_AM087402 Lily_symptomless_virus_AM263208 Lily_symptomless_virus_AM422452 Lily_symptomless_virus_AY326460 Lily_symptomless_virus_D43801 Lily_symptomless_virus_KJ627234 Lily_symptomless_virus_KJ627235 Lily_symptomless_virus_KJ627236 Lily_symptomless_virus_KJ627237 Lily_symptomless_virus_KJ627238 Lily_symptomless_virus_KJ627239 Lily_symptomless_virus_KJ627240 Lily_symptomless_virus_KJ627241 Lily_symptomless_virus_KJ627242 Lily_symptomless_virus_U43905 Lily_symptomless_virus_X15343 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M23025] TITLE Lily_symptomless_virus_LSV; LINK TAXA = Taxa2; DIMENSIONS NCHAR=654; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Chrysanthemum_virus_B_AM765839 GAAGCAAGGTTGAGACTTGCTGAGATGGAACGTGAGCGAGAGTTAGAGCGATTATCAGAAGAGACGAATCCAAGCTCCCCGGCGGAAGAAGCCAGGAATATTAGCCGTCTGACCCAACTTGCGGCGCTGTTGAGG?TTT?T?AGACGAGTGTGCATGTTACAAATATGGCTTTGGAAATTGGCAGGCCAATTTTCCAACCCCCCCCCAATATGGGGGGGGTTCCCTCAAAATATGTCCAGTCCAGGTATCAACTGATTTTCCTGGGGAAAATTAAGCCTCAGAAGATTTCCAATAACATGGCCACATCCGAGGATATGGTGAAAATACAGGTAGCCCTTGAGGGCCTAGGGGTTCCAACTGAGGCGATCAAAGAGGTGATCATCCGTTTAGTGCTCAACTGTGCGAACACAAGTAGTTCTGGCTATCAAGATCCAAAAGGGGTGATTGAGTGGGATGGTGGTGCGATCATTGCGGACGATGTTGTGGGTGTTATCACTGAGCACAGTACGTTAAGAAAGGTATGCCGTCTATATGCAGCTGTAGCGTGGAACTACATGCATTTACAGCAGACTCCACCTTCTGATTGGTCTGCTATGGGTTTCCATCCGAATGTCAAGTACGCG?CCTTTGACTTTTTCGATTATGTCGAGAAT Lily_latent_virus_AJ131812 GA--CGAACGAGGTGCAAGTGAAAATAACGC-GGAGTCCATACTTGAGCAGCGTTTGA-------------------CTAGGCTAA-----TCGAACG-------------TCTGAA----------TGCTGAAAAAC-ACAACTCCAATCTGCG------CAATGTGGCTTTCGAGATCGGTAGACCTAGCTTGGAGCCCACAAGCACAATGCGACGCAACCCCGCCAATCCTTACGGG--CGATTTTCCATCGATGAGC-TGTTTAAAATGAAGGTGGGCGTCGTGTCCAATAACATGGCGACAACTGAACAAATGGCAAAGATAGCATCAGACATCGCCGGTTTGGGAGTTCCTACGGAGCATGTCGCATCTGTTATACTTCAGATGGTCATCATGTGCGCATGCGTCAGCAGCTCTGTATTTCTTGACCCGGATGGTAGCATCGAGTTTGATAACGGTGCTGTGCCCGTTGACTCGATAGCAGCTATAATGAAGAAACATGCCGGGCTGCGCAAAGTGTGCCGTTTGTATGCACCCATTGTTTGGAACAGCATGCTCGTAAGGAATCAACCACCAGCGGATTGGCAGGCCATGGGCTTCCAATACAACACGAGGTTCGCGGCGTTCGATACGTTCGACTACGTTACCAAC Lily_symptomless_virus_AJ516059 GA--CGAGCCCACCAATTACAATAATAACGC-TGAGTCACTGTTAGAGCAACGACTAA-------------------CCCGGCTGA-----TCGAGAA-------------GCTCAA----------TGCTGAAAAGC-ACAATTCCAATCTGCG------AAATGTGGCTTTCGAGATCGGGAGGCCCTCACTGGAACCCACGAGTGCTATGCGAAGGAACCCTGCGAACCCCTACGGG--AGATTCTCAATTGACGAAC-TCTTCAAGATGAAGGTTGGCGTCGTATCTAACAACATGGCAACCACTGAACAAATGGCCAAGATAGCGTCAGACATTGCAGGGCTTGGGGTACCAACGGAGCACGTCGCATCAGTAATATTGCAAATGGTCATCATGTGTGCTTGCGTGAGCAGTTCGGCGTTCCTTGACCCTGAGGGCAGCATTGAGTTTGAGAATGGAGCGGTGCCCGTCGACTCCATCGCTGCGATCATGAAGAAGCACGCTGGACTGCGGAAAGTCTGCCGGCTCTATGCCCCTATCGTGTGGAACAGCATGCTTGTGCGAAATCAACCACCAGCTGATTGGCAAGCTATGCGCTTCCAATACAACACGCGGTTCGCAGCTTTCGACACCTTCGACTACGTGACTAAC Lily_symptomless_virus_AJ780923 GA--CGAGCCCACCAATTACAATAACAACGC-TGAGTCACTGTTAGAGCAACGACTAA-------------------CCCGGCTGA-----TTGAGAA-------------GCTCAA----------TGCTGAAAAGC-ACAATTCCAATCTGCG------AAATGTGGCTTTCGAGATCGGGAGGCCCTCGCTGGAACCCACGAGTGCCATGCGAAGGAATCCTGCGAACCCCTACGGG--AGATTCTCAATTGACGAAC-TCTTCAAGATGAAGGTTGGCGTCGTATCTAACAACATGGCAACCACTGAACAAATGGCCAAGATAGCGTCAGACATCGCAGGGCTTGGAGTACCAACGGAGCACGTCGCATCAGTAATATTGCAAATGGTCATCATGTGTGCTTGCGTGAGCAGTTCGGCGTTCCTTGACCCTGAGGGCAGCATTGAGTTTGAGAATGGAGCGGTGCCCGTCGACTCCATCGCTGCGATCATGAAGAAGCACGCTGGACTGCGGAAAGTCTGCCGGCTCTATGCCCCTATCGTGTGGAACAGCATGCTTGTGCGAAATCAACCACCAGCTGATTGGCAAGCTATGGGCTTCCAATACAATACGCGGTTAGCAGCTTTTGACACCTTCGAAAACGTGACTAAC Lily_symptomless_virus_AM087402 GA--CGAGCCCACCAATTACAATAACAACGC-TGAGTCACTGTTAGAGCAACGACTAA-------------------CCCGGCTGA-----TTGAGAA-------------GCTCAA----------TGCTGAAAAGC-ACAATTCCAATCTGCG------AAATGTGGCTTTCGAGATCGGGAGGCCCTCGCCGGAACCCACGAGTGCCATGCGAAGGAATCCTGCGAACCCCTACGGG--AGATTCTCAATTGACGAAC-TCTTCAAGATGAAGGTTGGCGTCGTATCTAACAACATGGCAACCACTGAACAAATGGCCAAGATAGCGTCAGACATCGCAGGGCTTGGAGTACCAACGGAGCACGTCGCATCAGTAATATTGCAAATGGTCATCATGTGTGCTTGCGTGAGCAGTTCGGCGTTCCTTGACCCTGAGGGCAGCATTGAGTTTGAGAATGGAGCGGTGCCCGTCGACTCCATCGCTGCGATCATGAAGAAGCACGCTGGACTGCGGAAAGTCTGCCGGCTCTATGCCCCTATCGTGTGGAACAGCATGCTTGTGCGAAATCAACCACCAGCTGATTGGCAAGCTATGGGCTTCC?ATACAATACGCGGTTCGCAGCTTTTGACACCTTCGACTACGTGACTAAC Lily_symptomless_virus_AM263208 GA--CGAGCCCACCAATTACAATAATAACGC-TGAGTCACTGTTAGAGCAACGACTAA-------------------CCCGGCTGA-----TCGAGAA-------------GCTCAA----------TGCTGAAAAAC-ACAATTCCAATCTGCG------AAATGTGGCTTTCGAGATCGGGAGGCCCTCACTGGAACCCACGAGTGCCATGCGAAGGAACCCTGCGAACCCCTACGGG--AGATTCTCAATTGACGAAC-TCTTCAAGATGAAGGTTGGCGTCGTATCTAACAACATGGCAACCACTGAACAAATGGCCAAGATAGCGTCAGACATTGCAGGGCTTGGGGTACCAACGGAGCACGTCGCATCAGTAATATTGCAAATGGTCATCATGTGTGCTTGCGTGAGCAGTTCGGCGTTCCTTGACCCTGAGGGCAGCATTGAGTTTGAGAATGGAGCGGTGCCCGTCGACTCCATCGCTGCGATCATGAAGAAGCACGCTGGACTGCGGAAAGTCTGCCGGCTCTATGCCCCTATCGTGTGGAACAGCATGCTCGTGAGAAATCAACCTCCAGCTGATTGGCAAGCTATGGGCTTCCAATACAACACGCGGTTCGCTGCTTTTGACACTTTCGACTATGTGACTAAC Lily_symptomless_virus_AM422452 GA--CGAGCCCACCAATTACAATAACAACGC-TGAGTCACTGTTAGAGCAACGACTAA-------------------CCCGGCTGA-----TTGAGAA-------------GCTCAA----------TGCTGAAAAGC-ACAATTCCAATCTGCG------AAATGTGGCTTTCGAGATCGGGAGGCCCTCGCTGGAACCCACGAGTGCCATGCGAAGGAATCCTGCGAACCCCTACGGG--AGATTCTCAATTGACGAAC-TCTTCAAGATGAAGGTTGGCGTCGTATCTAACAACATGGCAACCACTGAACAAATGGCCAAGATAGCGTCAGACATCGCAGGGCTTGGAGTACCAACGGAGCACGTCGCATCAGTAATATTGCAAATGGTCATCATGTGTGCTTGCGTGAGCAGTTCGGCGTTCCTTGACCCTGAGGGCAGCATTGAGTTTGAGAATGGAGCGGTGCCCGTCGACTCCATCGCTGCGATCATGAAGAAGCACGCTGGACTGCGGAAAGTCTGCCGGCTCTATGCCCCTATCGTGTGGAACAGCATGCTTGTGCGAAATCAACCACCAGCTGATTGGCAAGCTATGGGCTTCCAATACAATACGCGGTTCGCAGCTTTTGACACCTTCGACTACGTGACTAAC Lily_symptomless_virus_AY326460 GA--TGAGCCCACCAATTACAATAATAACGC-TGAGTCACTGTTAGAGCAACGACTAA-------------------CCCGGCTGA-----TCGAGAA-------------GCTCAA----------TGCTGAAAAGC-ACAATTCCAATCTGCG------AAATGTGGCTTTCGAGATCGGGAGGCCCTCACTGGAACCCACGAGTGCCATGCGAAGGAACCCTGCGAACCCCTACGGG--AGATTCTCAATTGACGAAC-TCTTCAAGATGAAGGTTGGCGTCGTGTCTAACAACATGGCAACCACTGAACAAATGGCCAAGATTGCGTCAGACATCGCAGGGCTTGGGGTACCAACGGAGCACGTCGCATCGGTAATATTGCAAATGGTCATCATGTGTGCTTGCGTGAGCAGTTCGGCGTTCCTTGACCCTGAGGGCAGCATTGAGTTTGAGAATGGAGCAGTGCCCGTCGACTCCATCGCTGCGATCATGAAGAAGCACGCTGGACTGCGGAAAGTCTGCCGGCTCTATGCCCCTATCGTGTGGAACAGCATGCTTGTGCGAAACCAACCACCAGCTGATTGGCAAGCTATGGGCTTCCAATACAACACGCGGTTCGCAGCTTTTGACACCTTCGACTACGTGACTAAC Lily_symptomless_virus_D43801 GA--TGAACCTGCCAATTACAACAACAATGC-CGAATCACTATTAGAACAACGATTAA-------------------CCCGACTGA-----TCGAGAA-------------GCTCAA----------TGCTGAAAAAC-ACAACTCCAATCTGCG------AAATGTAGCCTTCGAAATCGGGAGGCCCTCACTGGAACCTACAAGCGCTATGCGGAGGAACCCAGCGAACCCTTACGGG--AGATTTTCAATTGACGAGC-TCTTCAAAATGAAGGTGGGCGTCGTATCCAATAACATGGCAACTACCGAGCAGATGGCTAAGATTGCGTCTGACATTGCTGGGCTCGGGGTTCCCACGGAGCATGTTGCGTCAGTCATACTGCAGATGGTCATCATGTGCGCTTGTGTGAGCAGCTCGGCGTTTCTCGATCCCGAGGGTAGCATCGAGTTTGAGAACGGCGCAGTGCCCGTAGACTCCATCACGGCTATCATGAAGAAGCACGCCGGGCTGCGGAAAGTCTGCCGGCTCTACGCTCCTATCGTGTGGAACAGCATGCTCGTGAGAAATCAACCTCCAGCTGATTGGCAAGCTATGGGCTTCCAATACAACACGCGGTTCGCTGCCTTTGACACTTTCGACTATGTGACTAAC Lily_symptomless_virus_KJ627234 GA--TGAGCTCCCCAATTACAATAATAACGC-TGAGTCACTGTTAGAGCAACGACTAA-------------------CCCGGCTGA-----TCGAGAA-------------GCTCAA----------TGCTGAAAAGC-ACAATTCCAATCTGCG------AAATGTAGCTTTCGAGATCGGGAGGCCCTCACTGGAACCCACGAGTGCCATGCGAAGGAACCCTGCGAACCCCTACGGG--AGATTCTCAATTGACGAAC-TCTTCAAGATGAAGGTTGGCGTCGTATCTAACAACATGGCAACCACTGAACAAATGGCCAAGATAGCGTCAGACATCGCAGGGCTTGGAGTACCAACGGAGCACGTCGCAGCAGTAATATTGCAAATGGTCATCATGTGTGCTTGCGTGAGCAGTTCGGCGTTCCTTGACCCTGAGGGCAGCATTGAGTTTGAGAATGGAGCGGTGCCCGTCGACTCCATCGCTGCGATCATGAAGAAGCACGCTGGACTGCGGAAAGTCTGCCGGCTCTATGCCCCTATCGTGTGGAACAGCATGCTTGTGCGAAATCAACCACCAGCTGATTGGCAAGCTATGGGCTTCCAATACAATACGCGGTTCGCAGCTTTTGACACCTTCGACTACGTGACTAAC Lily_symptomless_virus_KJ627235 GA--TGAGCCCCCCAATTTCAATAATAACGC-TGAGTCACTGTTAGAGCAACGACTAA-------------------CCCGGCTGA-----TCGAGAA-------------GCTCAA----------TGCTGAAAAGC-ACAATTCCAATCTGCG------AAATGTGGCTTTCGAGATCGGGAGGCCCTCACTGGAACCCGCGAGTGCCATGCGAAGGAACCCTGCGAACCCCTACGGG--AGATTCTCAATTGACGAAC-TCTTCAAGATGAAGGTTGGCGTCGTGTCTAACAACATGGCAACCACTGAACAAATGGCCAAGATTGCGTCAGACATCGCAGGGCTTGGGGTACCAACGGAGCACGTCGCATCGGTAATATTGCAAATGGTTATCATGTGTGCTTGCGTGAGCAGTTCGGCGTTCCTTGACCCTGAGGGCAGCATTGAGTTTGAGAATGGAGCAGTGCCCGTCGACTCCATCGCTGCGATCATGAAGAAGCACGCTGGACTGCGGAAAGTCTGCCGGCTCTATGCCCCTATCGTGTGGAACAGCATGCTTGTGCGAAACCAACCACCAGCTGATTGGCAAGCTATGGGCTTCCAATACAACACGCGGTTCGCAGCTTTTGACACCTTCGACTATGGTACTAAC Lily_symptomless_virus_KJ627236 GA--TGAGCCCCCCAATTACAATAATAACGC-TGAGTCACTGTTAGAGCAACGACTAA-------------------CCCGGCTGA-----TCGAGAA-------------GCTCAA----------TGCTGAAAAGC-ACAATTCCAATCTGCG------AAATGTGGCTTTCGAGATCGGGAGGCCCTCACTGGAACCCACGAGTGCCATGCGAAGGAACCCTGCGAACCCCTACGGG--AGATTCTCAATTGACGAAC-TCTTCAAGATGAAGGTTGGCGTCGTATCTAACAACATGGCAACCACTGAACAGATGGCCAAGATAGCGTCAGACATTGCAGGGCTTGGGGTACCAACGGAGCACGTCGCATCAGTAATATTGCAAATGGTCATCATGTGTGCTTGCGTGAGCAGTTCGGCGTTCCTTGACCCTGAGGGCAGCATTGAGTTTGAGAATGGAGCGGTGCCCGTCGACTCCATCGCTGCGATCATGAAGAAGCACGCTGGACTGCGGAAAGTCTGCCGGCTCTATGCCCCTATTGTGTGGAACAGCATGCTTGTGCGAAATCAACCACCAGCTGATTGGCAAGCTATGGGCTTCCAATACAATACGCGGTTCGCAGCTTTCGACACCTTCGACTACGTGACTAAC Lily_symptomless_virus_KJ627237 GA--TGAGCCCCCCAATTACAATAATAACGC-TGAGTCACTGTTAGAGCAACGACTAA-------------------CCCGGCTAA-----TCGAGAA-------------GCTCAA----------TGCTGAAAAGC-ACAATTCCAATCTGCG------AAATGTGGCTTTCGAGATCGGGAGGCCCTCACTGGAACCCACGAGTGCCATGCGAAGGAACCCTGCGAACCCCTACGGG--AGATTCTCAATTGACGAAC-TCTTCAAGATGAAGGTTGGCGTCGTATCTAACAACATGGCAACCACTGAACAAATGGCCAAGATAGCGTCAGACATTGCAGGGCTTGGGGTACCAACGGAGCACGTCGCATCAGTAATATTGCAAATGGTCATCATGTGTGCTTGCGTGAGCAGTTCGGCGTTCCTTGACCCTGAGGGCAGCATTGAGTTTGAGAATGGAGCGGTGCCCGTCGACTCCATCGCTGCGATCATGAAGAAGCACGCTGGACTGCGGAAAGTCTGCCGGCTCTATGCCCCTATCGTGTGGAACAGCATGCTTGTGCGAAATCAACCACCAGCTGATTGGCAAGCTATGGGCTTCCAATACAACACGCGGTTCGCAGCTTTCGACACCTTCGACTACGTGACTAAC Lily_symptomless_virus_KJ627238 GA--?GAGCCCCCCAATTACAATAATAACGC-TGAGTCACTGTTAGAGCAACGACTAA-------------------CCCGGCTGA-----TCGAGAA-------------GCTCAA----------TGCTGAAAAGC-ACAATTCCAATCTGCG------AAATGTGGCTTTCGAGATCGGGAGGCCCTCACTGGAACCCACGAGTGCCATGCGAAGGAACCCTGCGAACCCCTACGGG--AGATTCTCAATTGACGAAC-TCTTCAAGATGAAGGTTGGCGTCGTATCTAACAACATGGCAACCACTGAACAAATGGCCAAGATAGCGTCAGACATCGCAGGGCTTGGGGTACCAACGGAGCACGTCGCATCAGTAATATTGCAAATGGTCATCATGTGTGCTTGCGTGAGCAGTTCGGCGTTCCTTGACCCTGAGGGCAGCATTGAGTTTGAGAATGGAGCGGTGCCCGTCGACTCCATCGCTGCGATCATGAAGAAGCACGCTGGACTGCGGAAAGTCTGCCGGCTCTATGCCCCTATCGTGTGGAACAGCATGCTTGTGCGAAATCAACCACCAGCTGATTGGCAAGCTATGGGCTTCCAATACAATACGCGGTTCGCAGCTTTTGACACCTTCGACTA?GTGACTAAC Lily_symptomless_virus_KJ627239 GA--?GAGCCCCCCAATTACAATAATAACGC-TGAGTCACTGTTAGAGCAACGACTAA-------------------CCCGGCTGA-----TCGAGAA-------------GCTCAA----------TGCTGAAAAGC-ACAATTCCAATCTGCG------AAATGTGGCTTTCGAGATCGGGAGGCCCTCACTGGAACCCACGAGTGCCATGCGAAGGAACCCTGCGAACCCCTACGGG--AGATTCTCAATTGACGAAC-TCTTCAAGATGAAGGTTGGCGTCGTATCTAACAACATGGCAACCACTGAACAAATGGCCAAGATTGCGTCAGACATCGCAGGGCTTGGGGTACCAACGGAGCACGTCGCATCAGTAATATTGCAAATGGTCATCATGTGTGCTTGCGTGAGCAGTTCGGCGTTCCTTGACCCTGAGGGCAGCATTGAGTTTGAGAATGGAGCGGTGCCCGTCGACTCCATCGCTGCGATCATGAAGAAGCACGCTGGACTGCGGAAAGTCTGCCGGCTCTATGCCCCTATCGTGTGGAACAGCATGCTTGTGCGAAACCAACCACCAGCTGATTGGCAAGCTATGGGCTTCCAATACAATACGCGGTTCGCAGCTCTTGACACCTTCGACTACGTGACTAAC Lily_symptomless_virus_KJ627240 GA--?GAGCCCACCAATTACAATAATAACGC-TGAGTCACTGTTAGAGCAACGACTAA-------------------CCCGGCTGA-----TCGAGAA-------------GCTCAA----------TGCTGAAAAGC-ACAATTCCAATCTGCG------AAATGTGGCTTTCGAGATCGGGAGGCCCTCGCTGGAACCCACGAGTGCCATGCGAAGGAACCCTGCGAACCCCTACGGG--AGATTCTCAATTGACGAAC-TCTTCAA?ATGAAGGTTGGCGTCGTATCTAACAACATGGCAACCACTGAACAAATGGCCAAGATAGCGTCAGACATCGCAGGGCTTGGGGTACCAACGGAGCACGTCGCATCAGTAATATTGCAAATGGTCATCATGTGTGCTTGCGTGAGCAGTTCGGCGTTCCTTGACCCTGAGGGCAGCATTGAGTTTGAGAATGGAGCGGTGCCCGTCGACTCCATCACTGCGATCATGAAGAAGCACGCTGGACTGCGGAAAGTCTGCCGGCTCTATGCCCCTATCGTGTGGAACAGCATGCTTGTGCGAAATCAACCACCAGCTGATTGGCAAGCTATGGGCTTCCAATACAACACGCGGTTCGCAGCTTTTGACACCTTCGACTACGTGACTAAC Lily_symptomless_virus_KJ627241 GA--?GAGCCCCCCAATTACAATAATAACGC-TGAGTCACTGTTAGAGCAACGACTAA-------------------CCCGGCTGA-----TTGAGAA-------------GCTCAA----------CGCTGAAAAGC-ACAATTCCAATCTGCG------AAATGTGGCTTTCGAGATCGGGAGGCCCTCGCTGGAACCCACGAGTGCCATGCGAAGGAACCCTGCGAACCCCTACGGG--AGATTCTCAATTGACGAAC-TCTTCAAGATGAAGGTTGGCGTCGTATCTAACAACATGGCAACCACTGAACAAATGGCCAAGATAGCGTCAGACATCGCAGGGCTTGGGGTACCAACGGAGCACGTCGCATCAGTAATATTGCAAATGGTCATCATGTGTGCTTGCGTGAGCAGTTCGGCGTTCCTTGACCCTGAGGGCAGCATTGAGTTTGAGAATGGGGCGGTGCCCGTCGACTCCATCGCTGCGATCATGAAGAAGCACGCTGGACTGCGGAAAGTCTGCCGGCTCTATGCCCCTATCGTGTGGAACAGCATGCTTGTGCGAAATCAACCACCAGCTGATTGGCAAGCTATGGGCTTCCAATACAACACGCCGTTCGCAGCTTTTGACACCTTCGACTACGTGACTAAC Lily_symptomless_virus_KJ627242 GA--?GAGCCCACCAATTACAATAATAACGC-TGAGTCACTGTTAGAGCAACGGCTAA-------------------CCCGGCTGA-----TCGAGAA-------------GCTCAA----------TGCTGAAAAGC-ACAATTCAAATCTGCG------AAATGTGGCTTTCGAGATCGGGAGGCCCTCACTGGAACCCACGAGTGCCATGCGAAGGAACCCTGCGAACCCCTACGGG--AGATTCTCAATTGACGAAC-TCTTCAAGATGAAGGTTGGCGTCGTATCTAACAACATGGCAACCACTGAACAAATGGCCAAGATAGCGTCAGACATCGCAGGGCTTGGGGTACCAACGGAGCACGTCGCATCAGTAATATTGCAAATGGTCATCATGTGTGCTTGCGTGAGCAGTTCGGCGTTCCTTGACCCTGAGGGCAGCATCGAGTTTGAGAATGGAGCTGTGCCCGTCGACTCCATCACTGCGATCATGAAGAAGCACGCTGGACTGCGGAAAGTCTGCCGGCTCTATGCCCCTATCGTGTGGAACAGCATGCTTGTGCGAAATCAACCACCAGCTGATTGGCAAGCTATGGGCTTCCAATACAACACGCGGTTCGCAGCTTTTGACACCTTCGACTACGTGACTAAC Lily_symptomless_virus_U43905 GA--CGAGCCCACCAATCACAATAATAACGC-TGAGTCACTGTTAGAGCAACGACTAA-------------------CCCGGCTGA-----TCGAGAA-------------GCTCAA----------TGCTGAAAAGC-ACAATTCCAATCTGCG------AAATGTGGCTTTCGAGATCGGGAGGCCCTCACTGGAACCCACGAGTGCCATGCGAAGGAACCCTGCGAACCCCTACGGG--AGATTCTCAATTGACGAAC-TCTTCAAGATGAAGGTTGGCGTCGTATCTAACAACATGGCAACCACTGAACAAATGGCCAAGATAGCGTCAGACATCGCAGGGCTTGGGGTATCAACGGAGCATGTCGCATCAGTAATATTGCAAATGGTCATCATGTGTGCTTGCGTGAGCAGTTCGGCGTTCCTTGACCCTGAGGGCAGCATTGAGTTTGAGAATGGAGCGGTGCCCGTCGACTCCATCGCTGCGATCATGAAGAAGCACGCTGGACTGCGGAAAGTCTGCCGGCTCTATGCCCCTATCGTGTGGAACAGCATGCTTGTGCGAAATCAACCACCAGCTGATTGGCAAGCTATGGGCTTCCAATACAACACGCGGTTCGCAGCTTTTGACACCTTCGACTACGTGACTAAC Lily_symptomless_virus_X15343 GA--CGAGCCCACCAATTACAATAATAACGC-TGAGTCACTGTTAGAGCAACGACTAA-------------------CCCGGCTGA-----TCGAGAA-------------GCTCAA----------TGCTGAAAAGC-ACAATTCCAATCTGCG------AAATGTGGCTTTCGAGATCGGGAGGCCCTCGCTGGAACCCACGAGTGCCATGCGAAGGAACCCTGCGAACCCCTACGGG--AGATTCTCAATTGACGAAC-TCTTCAAGATGAAGGTTGGCGTCGTATCTAACAACATGGCAACCACTGAACAAATGGCCAAGATAGCGTCAGACATCGCAGGGCTTGGGGTACCAACGGAGCACGTCGCATCAGTAATATTGCAAATGGTCATCATGTGCGCTTGCGTGAGCAGTTCGGCGTTCCTTGACCCTGAGGGCAGCATTGAGTTTGAGAATGGAGCGGTGCCCGTCGACTCCATCGCTGCGATCATGAAGAAGCACGCTGGACTGCGGAAAGTCTGCCGGCTCTATGCCCCTATCGTGTGGAACAGCATGCTTGTGCGAAATCAACCACCAGCTGATTGGCAAGCTATGGGCTTCCAATACAACACGCGGTTCGCAGCTTTTGACACCTTCGACTACGTGACTAAC ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M23026] TITLE Lily_mottle_virus_LMoV; LINK TAXA = Taxa1; DIMENSIONS NCHAR=792; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Lily_mottle_virus_AB054886 AATGAGACACTCAACGCTGGGGCCTCTAGCTCCACACAAACAAGTCGCCCAACACGTCCGCAAACTGCCGCGGTCGATGTAGCACCACAACAGAGCCCCGAACCAAGAGCACGCGATCGTGATGTTGATGCTGGAACCGTGGGAACATTCCAAATTCCCCGACTAAAGGCATTGGCGACAAAGATTAGCATTCCAAAGATTAGGGGGCGTACAATAGTCAACCTTGGGCACCTTGTGAATTACAATCCAGAGCAAACAGACATCTCTAACACAAGGTCGACCCAGAAACAGTTTGAGACATGGTACAACGCCGTGAAAGATGAGTACGGTCTCAATGATGAGAGCATGGCACTGACCATGAACGGTCTGATGGTTTGGTGCATCGAAAATGGCACCTCACCAAACATAAATGGCGCGTGGCTCATGATGGACGGAGATCAGCAAGTTGAATTTCCATTACGTCCCATAATTGAACACGCAAAACCGACGCTGCGCCAGATCATGGCGCATTTCTCACATCTCGCTGAAGCATACATTGAGAAACAAAATGCAGAGAAACCGTACATGCCTAGGTACGGCCTTCAGCGAAATCTCACCGATTTCACGCTAGCACGATTCGCTTTCGATTTCTATGAAGTTACTTCACGCACGCCCGCGCGAGCGAAGGAAGCACACTTCCAGATGAAAACAGCCGCCTTGCGCGGAAAACAATCGAAGCTATTTGGGTTAGATGGAAAGGTGACCACCCAAGATGAGGACACGGAGAGGCATACAGCAGACGATGTCAATAAA Lily_mottle_virus_FJ618539 AATGAGACACTCAACGCTGGAGCTTCCAGTTCCACACAAGCGAGCCGATCGACTCGACCTGAGGC---TGCAATTGATGTGGCACCGCAACAGAGTTCTGAGGCTAGAGTGCGTGATCGTGATGTTGATGCCGGCACCGTGGGAACATACCAAATCCCACGACTGAAGGCACTAGCAACAAAGATCAACGTACCCAAGGTCAAGGGGCGAATGATAGTGAACACTGGGCACCTTGTGAATTACAACCCAGACCAAACAGATATTTCAAATACAAGGTCAACCCAGAAGCAGTTTGAGGCTTGGTACAACGCAGTGAAAGACGAGTATGGTCTCAACGACGAGAGTATGGCTCTCGCAATGAATGGTCTGATGGTTTGGTGCATAGAGAATGGCACCTCACCAAATGTAAATGGCGTGTGGCTCATGATGGACGGAGATCAGCAAGTTGAATTTCCTTTACGTCCTATACTTGAACACGCAAAACCGACGCTGCGCCAAATTATGGCGCATTTCTCAAACCTCGCTGAAGCTTATATTGAGAAGCAAAATTTAGAGAAACCGTACATGCCTAGGTACGGCCTTCAGCGAAATCTCACCGACTTCAATCTAGCACGATTTGCTTTTGAATTCTATGAAGTTACTTCACGCACGCCAGCACGCGCTAAAGAAGCACACTTCCAAATGAAAACAGCCGCTTTACGTGGAAAACAATCGAAGCTATTTGGGCTAGATGGAAAGGTGAACACCCAAGATGAGGACACGGAGAGGCATACAGCAGATGATGTCAATAAA Lily_mottle_virus_JN127341 AATGAAACGCTCAATGCTGGAGCCTCCAGTTCCACACAAACAAGCCGATCGACTCGACCTGAAGCCGCTGCAATTGACGTGGCACCACAACAGAGCTCTGAGGCTAGAGTGCGTGATCGTGATGTTGATGCTGGCACCGTGGGAACATACCAAATCCCTCGATTGAAAGCACTGGCAACGAAGATTAACGTACCCAAAGTCAAGGGGCGAATAATAGTGAACACCGGGCACCTTGTAAACTACAACCCAGATCAAGCAGACATTTCAAACACAAGGTCAACCCAAAAGCAATTTGAGACTTGGTACGACGCTGTAAAAGGTGAGTATGGTCTCAACGACGAGAGTATGGCTCTCGCAATGAATGGTCTGATGGTTTGGTGCATAGAGAATGGCACCTCACCAAACATAAATGGCGTGTGGCTCATGATGGACGGAGATCAGCAAGTTGAATTTCCTTTACGTCCTATACTTGAACACGCAAAACCGACGCTGCGCCAAATTATGGCGCATTTCTCAAACCTCGCTGAAGCTTACATTGAGAAGCAGAATTTAGAGAAACCGTACATGCCTAGGTACGGCCTTCAGCGAAATCTCACCGACTTCAATCTAGCACGATTTGCTTTTGATTTCTATGAAGTTACTTCACGCACGCCAGCACGCGCCAAAGAAGCACACTTCCAAATGAAAACAGCCGCTTTACGCGGAAAACAATCGAAGCTATTTGGGTTAGATGGAAAGGTGAACACCCAAGATGAGGACACGGAGAGGCATACAGCAGACGATGTTAATAAA Lily_mottle_virus_JQ361098 AATGAGACACTCAATGCTGGAGCTTCCAGTTCCACACAAGCGAGCCGATCGACTCGACCTGAGGC---TGCAATTGATGTGGCACCGCAACAGAGTTCTGAGGCTAGAGTGCGTGATCGTGATGTTGATGCCGGCACCGTGGGAACATACCAAATCCCACGACTGAAGGCACTAGCAACAAAGATCAACGTACCCAAGGTCAAGGGGCGAATGATAGTGAACACTGGGCACCTTGTGAATTACAACCCAGACCAAACAGATATTTCAAATACAAGGTCAACCCAGAAGCAGTTTGAGGCTTGGTACAACGCAGTGAAAGACGAGTATGGTCTCAACGACGAGAATATGGCTCTCGCAATGAATGGTCTGATGGTTTGGTGCATAGAGAATGGCACCTCACCAAATGTAAATGGCGTGTGGCTCATGATGGACGGAGATCAGCAAGTTGAATTTCCTTTACGTCCTATACTTGAACACGCAAAACCGACGCTGCGCCAAATTATGGCGCATTTCTCAAACCTCGCTGAAGCTTATATTGAGAAGCAAAATTTAGAGAAACCGTACATGCCTAGGTACGGCCTTCAGCGAAATCTCACCGACTTCAATCTAGCACGATTTGCTTTTGATTTCTATGAAGTTACTTCACGCACGCCAGCACGCGCTAAAGAAGCACACTTCCAAATGAAAACAGCCGCTTTACGCGGAAAACAATCGAAGCTATTTGGGCTAGATGGAAAGGTGAACACCCAAGATGAGGACACGGAGAGGCATACAGCAGATGATGTCAATAAA Lily_mottle_virus_KC430331 AATGAGACACTCAATGCTGGAGCTTCCAGTTCCACACAAGCGAGCCGATCGACTCGACCTGAGGC---TGCAATTGATGTGGCACCGCAACAGAGTTCTGAGGCTAGAGTGCGTGATCGTGATGTTGATGCCGGCACCGTGGGAACATACCAAATCCCACGACTGAAGGCACTAGCAACAAAGATCAACGTACCCAAGGTCAAGGGGCGAATGATAGTGAACACTGGGCACCTTGTGAATTACAACCCAGACCAAACAGATATTTCAAATACAAGGTCAACCCAGAAGCAGTTTGAGGCTTGGTACAACGCAGTGAAAGACGAGTATGGTCTCAACGACGAGAGTATGGCTCTCGCAATGAATGGTCTGATGGTTTGGTGCATAGAGAATGGCACCTCACCAAATGTAAATGGCGTGTGGCTCATGATGGACGGAGATCAGCAAGTTGAATTTCCTTTACGTCCTATACTTGAACACGCAAAACCGACGCTGCGCCAAATTATGGCGCACTTCTCAAACCTCGCTGAAGCTTATATTGAGAAGCAAAATTTAGAGAAACCGTACATGCCTAGGTACGGCCTTCAGCGAAATCTCACCGACTTCAATCTAGCACGATTTGCTTTTGATTTCTATGAAGTTACTTCACGCACGCCAGCACGCGCTAAAGAAGCACACTTCCAAATGAAAACAGCCGCTTTACGCGGAAAACAATCGAAGCTATTTGGGCTAGATGGAAAGGTGAACACCCAAGATGAGGACACGGAGAGGCATACAGCAGATGATGTCAATAAA Lily_mottle_virus_KJ627226 AATGAAACACTCAATACTGGAGCTTCCAGTTCCACACAAGCGAGCCGATCGACTCGACCTGAGGC---TGCAATTGATGTGGCACCGCAACAGAGTTCTGAGGCTAGAGTGCGTGATCGTGATGTTGATGCCGGCACCGTGGGAACATACCAAATCCCACGACTGAAGGCACTAGCAACAAAGATCAACGTACCTAAGGTCAAGGGGCGAATGATAGTGAACACTGGGCACCTTGTGAATTACAACCCAGACCAAACAGATATTTCAAATACAAGGTCAACCCAGAAGCAGTTTGAGGCTTGGTACAACGCAGTGAAAGACGAGTATGGTCTCAACGACGAGAATATGGCTCTCGCAATGAATGGTCTGATGGTTTGGTGCATAGAGAATGGCACCTCACCAAATGTAAATGGCGTGTGGCTCATGATGGACGGAGATCAGCAAGTTGAATTTCCTTTACGTCCTATACTTGAACACGCAAAACCGACGCTGCGCCAAATTATGGCGCATTTCTCAAACCTCGCTGAAGCTTATATTGAGAAGCAAAATTTAGAGAAACCGTACATGCCTAGGTACGGCCTTCAGCGAAATCTCACCGACTTCAATCTAGCACGATTTGCTTTTGATTTCTATGAAGTTACTTCACGCACGCCAGCACGCGCTAAAGAAGCACACTTCCAAATGAATACAGCCGCTTTACGCGGAAAGCAATCGAAGCTATTTGGGCTAGATGGAAAGGTGAACACCCAAGATGAGGACACGGAGAGGCATAC?GCAGA?GATGT?AATAAA Lily_mottle_virus_KJ627227 AATGAGACACTCAATACTGGAGCTTCCAGTTCCACACAAGCGAGCCGATCGACTCGACCTGAGGC---TGCAATTGATGTGGCACCGCAACAGAGTTCTGAGGCTAGAGTGCGTGATCGTGATGTTGATGCCGGCACCGTGGGAACATACCAAATCCCACGACTGAAGGCACTAGCAACAAAGATCAACGTACCCAAGGTCAAGGGGCGAATGATAGTGAACACTGGGCACCTTGTGAATTACAACCCAGACCAAACAGATATTTCAAATACAAGGTCAACCCAGAAGCAGTTTGAGGCTTGGTACAACGCAGTGAAAGACGAGTATGGTCTCAACGACGAGAGTATGGCTCTCGCAATGAATGGTCTGATGGTTTGGTGCATAGAGAATGGCACCTCACCAAATGTAAATGGCGTGTGGCTCATGATGGACGGAGATCAGCAAGTTGAATTTCCTTTACGTCCTATACTTGAACACGCAAAACCGACGCTGCGCCAAATTATGGCGCATTTCTCAAACCTCGCTGAAGCTTATATTGAGAAGCAAAATTTAGAGAAACCGTACATGCCTAGGTACGGCCTTCAGCGAAATCTCACCGACTTCAATCTAGCACGATTTGCTTTTGATTTCTATGAAGTTACTTCACGCACGCCAGCACGCGCTAAAGAAGCACACTTCCAAATGAAAACAGCCGCTTTACGCGGAAAACAATCGAAGCTATTTGGGCTAGATGGAAAGGTGAACACCCAAGATGAGGACACGGAGAGGCATACAGCAGATGATGT?AATAAA Lily_mottle_virus_KJ627228 AATGAGACACTCAACGCTGGGGCCTCTAGCTCCACACAAACGAGTCGCCCAACACGTCCGGAAACTGCCGCAGTCGATGTAGCACCACAACAGAGCCCCGAATCAAGAGTACGCGATCGCGACGTTGATGCTGGAACCGTGGGAACATTCCAAATTCCCCGACTAAAGGCATTGGCGACAAAAATTAGCATCCCAAAGATTAGGGGGCGGACAATAGTCAACCTTGGGCACCTTGTGAATTACAATCCAGAGCAAACAGACATCTCTAACACAAGGTCGACCCAGAAACAGTTTGAGACATGGTACAACGCCGTGAAAGATGAGTACGGTCTCAATGATGAGAGCATGGCACTGACCATGAACGGTCTGATGGTTTGGTGCATTGAGAATGGCACTCCACCAAACATAAATGGCGCGTGGCTCATGATGCACGGAGATCAGCAAGTTGAATTTCCATTACGTCCTATAATTGAACACGCAAAACCGACGCTGCGCCAGATCATGGCGCATTTCTCACATCTCGCTGAAGCATACATTGAGAAACAAAATGCAGAGAAACCGTACATGCCTAGGTACGGCCTTCAGCGAAATCTCACCGATTTCACGCTAGCACGATTCGCTTTCGATTTCTATGAAGTTACTTCACGCACGCCCGCGCGAGCGAAGGAAGCACACTTCCAGATGAAAACAGCCGCCTTGCGCGGAAAACAATCGAAGCTATTTGGGTTAGATGGAAAGGTGACCACCCAAGATGAGGACACGGAGAGGCATACAGCAGACGATGTCAATAAA Lily_mottle_virus_KJ627229 AATGAGACACTCAACACTGGAGCTTCCAGTTCCACACAAGCGAGCCGATCGACTCGACCTGAGGC---TGCAATTGATGTGGCACCGCAACAGAGTTCTGAGGCTAGAGTGCGTGATCGTGATGTTGATGCCGGCACCGTGGGAACATACCAAATCCCACGACTGAAGGCACTAGCAACAAAGATCAACGTACCCAAGGTCAAGGGGCGAATGATAGTGAACACTGGGCACCTTGTGAATTACAACCCAGACCAAACAGATATTTCAAATACAAGGTCAACCCAGAAGCAGTTTGAGGCTTGGTACAACGCAGTGAAAGACGAGTATGGTCTCAACGACGAGAGTATGGCTCTCGCAATGAATGGTCTGATGGTTTGGTGCATAGAGAATGGCACCTCACCAAATGTAAATGGCGTGTGGCTCATGATGGACGGAGATCAGCAAGTTGAATTTCCTTTACGTCCTATACTTGAACACGCAAAACCGACGCTGCGCCAAATTATGGCGCATTTCTCAAACCTCGCTGAAGCTTATATTGAGAAGCAAAATTTAGAGAAACCGTACATGCCTAGGTACGGCCTTCAGCGAAATCTCACCGACTTCAATCTAGCACGATTTGCTTTTGATTTCTATGAAGTTACTTCACGCACGCCAGCACGCGCTAAAGAAGCACACTTCCAAATGAAAACAGCCGCTTTACGCGGAAAACAATCGAGGCTATTTGGGCTAGATGGAAAGGTGAACACCCAAGATGAGGACACGGAGAGGCATACAGCAGATGATGTTAATAAA Lily_mottle_virus_KJ627230 AATGAGACACTCAATGCTGGGGCCTCTAGTTCCACACAAACGAGTCGACCAACACGTCCGGAAACTGCCGCGGTCGATGTAGCACCACAACAGAGCCCCGAAAATAGAGTACGCGATCGTGACGTTGATGCTGGAACCGTGGGAACATTCCAAATTCCCCGCCTAAAGGCATTGGCAACAAAGATTAGCATTCCAAAGATTAGGGGGCGGACAATAGTCAATCTTGGGCACCTTGTGAATTACAATCCAGAACAAACAGACATCTCGAACACAAGGTCGACCCAGAAACAGTTTGAGACATGGTACAACGCCGTGAAAGATGAGTACGGTCTCAATGATGAGAGCATGGCACTGACCATGAACGGTCTGATGGTTTGGTGCATCGAGAATGGCACCTCACCAAACATAAATGGCGCGTGGCTCATGATGGACGGAGATCAGCAAGTTGAATTTCCATTGCGTCCTATAATTGAACACGCAAAACCGACGCTGCGCCAGATCATGGCGCATTTCTCACATCTCGCTGAAGCATATATTGAGAAACAAAATGCAGAGAAACCGTACATGCCTAGGTACGGCCTTCAGCGAAATCTCACCGATTTCACGCTAGCACGATTCGCTTTCGATTTCTATGAGGTTACTTCACGCACGCCCGCGCGAGCGAAGGAAGCACACTTCCAGATGAAAACAGCCGCCTTGCGCGGAAAACAATCGAAGCTATTTGGGTTAGATGGAAAGGTGACCACCCAAGATGAGGACACGGAGAGGCATACAGCAGATGATGTCAATAAA Lily_mottle_virus_KJ627231 AATGA?ACACTCAATACTGGAGCTTCCAGTTCCACACAAGCGAGCCGATCGACTCGACCTGAGGC---TGCAATTGATGTGGCACCGCAACAGAGTTCTGAGGCTAGAGTGCGTGATCGTGATGTCGATGCCGGCACCGTGGGAACATACCAAATCCCACGACTGAAGGCACTAGCAACAAAGATCAACGTACCCAAGGTCAAGGGGCGAATGATAGTGAACACTGGGCACCTTGTGAATTACAACCCAGACCAAACAGATATTTCAAATACAAGGTCAACCCAGAAGCAGTTTGAGGCTTGGTACAACGCAGTGAAAGACGAGTATGGTCTCAACGACGAGAGTATGGCTCTCGCAATGAATGGTCTGATGGTTTGGTGCATAGAGAATGGCACCTCACCAAATGTAAATGGCGTGTGGCTCATGATGGACGGAGATCAGCAAGTTGAATTTCCTTTACGTCCTATACTTGAACACGCAAAACCGACGCTGCGCCAAATTATGGCGCATTTCTCAAACCTCGCTGAAGCTTATATTGAGAAGCAAAATTTAGAGAAACCGTACATGCCTAGGTACGGCCTTCAGCGAAATCTCACCGACTTCAATCTAGCACGATTTGCTTTTGATTTCTATGAAGTTACTTCACGCACGCCAGCACGCGCTAAAGAAGCACACTTCCAAATGAAAACAGCCGCTTTACGCGGAAAACAATCGAGGCTATTTGGGCTAGACGGAAAGGTGAACACCCAAGATGAGGACACGGAGAGGCATACAGCAGATGATGTCAATAAA Lily_mottle_virus_KJ627232 AATGA?ACACTCAATACTGGAGCTTCCAGTTCCACACAAGCGAGCCGATCGACTCGACCTGAGGC---TGCAATTGATGTGGCACCGCAACAGAGTTCTGAGGCTAGAGTGCGTGATCGTGATGTTGATGCCGGCACCGTGGGAACATACCAAATCCCACGACTGAAGGCACTAGCAACAAAGATCAACGTACCCAAGGTCAAGGGGCGAATGATAGTGAACACTGGGCACCTTGTGAATTACAACCCAGACCAAACAGATATTTCAAATACAAGGTCAACCCAGAAGCAGTTTGAGGCTTGGTACAACGCAGTGAAAGACGAGTATGGTCTCAACGACGAGAGTATGGCTCTCGCAATGAATGGTCTGATGGTTTGGTGCATAGAGAATGGCACCTCACCAAATGTAAATGGCGTGTGGCTCATGATGGACGGAGATCAGCAAGTTGAATTTCCTTTACGTCCTATACTTGAACACGCAAAACCGACGCTGCGCCAAATTATGGCGCATTTCTCAAACCTCGCTGAAGCTTATATTGAGAAGCAAAATTTAGAGAAACCGTACATGCCTAGGTACGGCCTTCAGCGAAATCTCACCGACTTCAATCTAGCACGATTTGCTTTTGATTTCTATGAAGTTACTTCACGCACGCCAGCACGCGCTAAAGAGGCACACTTCCAAATGAAAACAGCCGCTTTACGCGGAAAACAATCGAAGCTATTTGGGCTAGATGGAAAGGTGAACACCCAAGATGAGGACACGGAGAGGCATACAGCAGATGATGTCAATAAA Lily_mottle_virus_KJ627233 AATGAGACACTCAATACTGGAGCTTCCAGTTCCACACAAGCGAGCCGATCGACTCGACCTGAGGC---TGCAATTGATGTGGCACCGCAACAGAGTTCTGAGGCTGGAGTGCGTGATCGTGATGTCGACGCCGGCACCGTGGGAACATACCAAATCCCGCGACTGAAGGCGCTAGCAACAAAGATCAACGTACCCAAGGTCAAGGGGCGAATGATAGTGAACACTGGGCACCTTGTGAATTACAACCCAGATCAAACAGATATTTCAAATACAAGGTCAACCCAGAAGCAGTTTGAGGCTTGGTACAACGCAGTGAAAGACGAGTATGGTCTCAACGACGAGAGTATGGCTCTCGCAATGAATGGTCTGATGGTTTGGTGCATAGAGAATGGCACCTCACCAAATGTAAATGGCGTGTGGCTCATGATGGACGGAGATCAGCAAGTTGAATTTCCTTTACGTCCTATACTTGAACACGCAAAACCGACGCTGCGCCAAATTATGGCGCATTTCTCAAACCTCGCTGAAGCTTATATTGAGAAGCAAAATTTAGAGAAACCGTACATGCCTAGGTACGGCCTTCAGCGAAATCTCACCGACTTCAATCTAGCACGATTTGCTTTTGATTTCTATGAAGTTACTTCACGCACGCCAGCACGCGCTAAAGAAGCACACTTCCAAATGAAAACAGCCGCTTTACGCGGAAAACAATCGAGGCTATTTGGGCTAGATGGAAAGGTGAACACCCAAGATGAGGACACGGAGAGGCATACAGCAGATGATGTCAATAAA Lily_mottle_virus_NC001616 AATGACACAATTGATGCAGGAG---GAAGCA----ACAAGAAAGATGCAAAACCAGAGCAGGG----------------CAGCATCCAGCCAAACCC----GAACAAAGGAAAGGATAAGGATGTTAATGCAGGCACATCTGGGACACATACTGTGCCGAGAATCAAGGCTATCACGTCCAAAATGAGAATGCCCACAAGCAAGGGAGCAACCGTGCTAAACTTAGAACATTTGCTTGAGTATGCTCCACAACAAATTGATATTTCAAATACTCGGGCAACTCAATCACAGTTTGATACGTGGTATGAGGCAGTGCGGATGGCATACGACATAGGAGAAACTGAGATGCCAACTGTGATGAATGGGCTTATGGTTTGGTGCATTGAAAATGGAACCTCGCCAAATGTCAACGGAGTTTGGGTTATGATGGATGGGAATGAACAAGTTGAGTACCCGTTGAAACCAATCGTTGAGAATGCAAAACCAACCCTTAGGCAAATCATGGCACATTTCTCAGATGTTGCAGAAGCGTATATAGAAATGCGCAACAAAAAGGAACCATATATGCCACGATATGGTTTAATTCGAAATCTGCGGGATATGGGTTTAGCGCGTTATGCCTTTGACTTTTATGAGGTCACATCACGAACACCAGTGAGGGCTAGGGAAGCGCACATTCAAATGAAGGCCGCAGCATTGAAATCAGCCCAACCTCGACTTTTCGGGTTGGACGGTGGCATCAGTACACAAGAGGAGAACACAGAGAGGCACACCACCGAGGATGTCTCTCCA Lily_mottle_virus_S44147 AATGAGACACTCAATGCTGGAGCTTCCAGTTCCACACAAGCGAGCCGAGCGACTCGACCTGAGGC---TGCAATTGATGTGGCACCGCAACAGAGTTCTGAGGCTAGAGTGCGTGATCGTGATGTTGATGCCGGCACCGTGGGAACATACCAAATCCCACGATTGAAGGCACTAGCAACAAAGATCAACGTGCCTAAGGTCAAGGGGCGAATGATAGTGAACACTGGGCACCTTGTGAATTACAACCCAGACCAAACAGATATTTCAAATACAAGGTCAACCCAGAAGCAATTTGAGACTTGGTACAACGCAGTGAAAGATGAGTACGGTCTCAACGACGAGAGTATGGCTCTCGCAATGAATGGTCTGATGGTTTGGTGCATAGAGAATGGCACCTCACCAAATGTAAATGGCGTGTGGCTCATGATGGACGGAGATCAGCAAGTTGAATTTCCTTTACGTCCTATACTTGAACACGCAAAACCGACGCTGCGCCAAATCATGGCGCACTTCTCAAATCTCGCTGAAGCTTACATTGAGAAGCAAAATTTGGAGAAGCCATACATGCCTAGGTATGGCCTTCAGCGAAATCTCACCGACTTCAATCTAGCACGATTCGCTTTCGATTTCTATGAAGTCACTTCACGCACGCCAGCGCGCGCGAAAGAAGCACACTTCCAGATGAAAACAGCCGCCTTGCGCGGGAAACAATCGAAGCTATTTGGGTTAGATGGAAAGGTGAACACCCAAGATGAGGACACGGAGAGGCATACAGCAGACGATGTTAATAAA 'Rembrandt tulip-breaking virus AB674535' AACGAGACTCTGAACGCGGGGGCCGCAAGTACTTCGCGAACACCACCGGCAACGCAAGCGGGAGC--------------TGGCTCT-------AGTC---AGCTAATAACGCGGGACCGTGATGTGGACGCAGGTACAGTTGGAACGTTTCAGGTTCCCCGTATTCAGAAACTCGCAGCTCGGCTTGCTGTACCTAAGATTAGTGGTCGTATATTAATAAATCTAGACCACCTGATAAACTACAACCCGGAGCAAGTTGATATATCAAACACGCGTGCTAGTCAACATCAGTTCGCATCATGGTATGAAGGCGTCAAGCTGGATTATGGTCTTGAGGATGCTGGCATGGCAATTATTTTGAACGGGTTCATGGTGTGGTGCATAGAGAATGGCACCTCACCAAACATAAATGGCATGTGGGTCATCATGGATGGTACCGATCAAGTCGAGTATCCATTACGTCCAATGATAGAACACGCGAAACCCACTTTGCGCCAGATCATGGCGCACTTTTCACCTCTCGCTGAAGCTTACATTGAAAAGCAGAATTTGGAGAGACCGTATATGCCAAGATACGGACTTCAGCGAAACCTCACGGACTTCGGATTGGCACGATATGCATTCGACTTCTATGAAATGAATTCCAAAACGCCGCAACGCGCTAGGGAAGCTCATATTCAGATGAAGGCAGCCGCACTACGTGGGGCGCGCACGAAGCTATTCGGGCTGGACGGGAAAGTGACCACACAGGATGAGGACACGGAGAGGCACACTACAGACGATGTTAATGCA Tulip_band_breaking_virus_AB078007 AATGAGACACTCAATGCTGGGGCCTCTAGCACCACACCAACAAGTCGCCCAACACGTCCGGAAACTGCCGCGGTTGATGTAGCACCACAACAGAGCCCCGAACCAAGAGCACGCGATCGTGACGTTGATGCTGGAACCGTGGGAACATTCCAAATTCCCCGACTAAAGGCATTGGCGACAAAGATTAGCATTCCAAAGATTAGGGGGCGGACAATAGTCAACCTTGGGCACCTTGTGAATTACAATCCAGAGCAAACAGACATCTCTAACACAAGGTCGACCCAAAAACAGTTTGAGACATGGTACAACGCCGTGAAAGATGAGTACGGTCTCAATGATGAGAGCATGGCACTGACCATGAACGGTCTGATGGTTTGGTGCATCGAAAATGGCACCTCACCAAACATAAATGGAGCGTGGCTCATGATGGACGGAGATCAGCAAGTTGAATTTCCATTACGTCCCATAATTGAACACGCAAAACCGACGCTGCGCCAGATCATGGCGCATTTCTCACATCTCGCTGAAGCATATATTGAGAAACAAAATGCAGAGAAACCGTACATGCCTAGGTACGGCCTTCAGCGAAATCTCACCGATTTCACGCTAGCACGATTCGCTTTCGATTTCTATGAAGTTACTTCACGCACGCCCGCGCGAGCGAAGGAAGCACACTTCCAGATGAAAACAGCCGCCTTGCGCGGAAAACAATCGAGGCTATTTGGGTTAGATGGGAAGGTGACCACCCAAGATGAGGACACGGAGAGGCATACCGCAGACGATGTCAATAAA ; END; BEGIN TREES; TITLE Lily_symptomless_virus_LSV; LINK TAXA = Taxa2; TRANSLATE 1 Lily_symptomless_virus_KJ627234, 2 Lily_symptomless_virus_KJ627235, 3 Lily_symptomless_virus_KJ627236, 4 Lily_symptomless_virus_KJ627237, 5 Lily_symptomless_virus_KJ627238, 6 Lily_symptomless_virus_KJ627239, 7 Lily_symptomless_virus_KJ627240, 8 Lily_symptomless_virus_KJ627241, 9 Lily_symptomless_virus_KJ627242, 10 Lily_symptomless_virus_AJ780923, 11 Lily_symptomless_virus_AM422452, 12 Lily_symptomless_virus_AM087402, 13 Lily_symptomless_virus_X15343, 14 Lily_symptomless_virus_AY326460, 15 Lily_symptomless_virus_U43905, 16 Lily_symptomless_virus_AJ516059, 17 Lily_symptomless_virus_AM263208, 18 Lily_symptomless_virus_D43801, 19 Lily_latent_virus_AJ131812, 20 Chrysanthemum_virus_B_AM765839; TREE Imported_tree_0 = [&R] (20:1.42416852,(18:0.05628476,(19:0.34698853,(17:0.0,((16:0.00346561,(3:0.00520077,4:0.00170914)0.5350:0.00350235)0.4800:0.00171404,(((1:0.00697875,5:0.0)0.3900:0.0,(6:0.00172528,(2:0.01056234,14:0.00173373)0.9270:0.00698191)0.6170:0.00349082)0.1890:0.00513812,(15:0.0051706,((7:0.0,9:0.00875864)0.4570:0.00172466,(13:0.00171537,(8:0.00704441,(10:0.00519555,(11:0.0,12:0.00171604)0.7610:0.0)0.9910:0.00694562)0.3890:0.00170329)0.1100:0.0)0.1310:0.00171561)0.1040:0.0)0.3970:0.00171849)0.8670:0.01235969)0.9500:0.08722177)0.2200:0.0)0.0000:1.07717999); END; BEGIN TREES; TITLE Lily_mottle_virus_LMoV; LINK TAXA = Taxa1; TRANSLATE 1 Lily_mottle_virus_KJ627226, 2 Lily_mottle_virus_KJ627227, 3 Lily_mottle_virus_KJ627228, 4 Lily_mottle_virus_KJ627229, 5 Lily_mottle_virus_KJ627230, 6 Lily_mottle_virus_KJ627231, 7 Lily_mottle_virus_KJ627232, 8 Lily_mottle_virus_KJ627233, 9 Lily_mottle_virus_JQ361098, 10 Lily_mottle_virus_FJ618539, 11 Lily_mottle_virus_KC430331, 12 Lily_mottle_virus_S44147, 13 Lily_mottle_virus_JN127341, 14 Tulip_band_breaking_virus_AB078007, 15 Lily_mottle_virus_AB054886, 16 'Rembrandt tulip-breaking virus AB674535', 17 Lily_mottle_virus_NC001616; TREE Imported_tree_0 = [&R] (17:0.8108666950000001,(16:0.48430224,((5:0.00920307,(3:0.01198992,(14:0.01270046,15:0.00444787)0.8270:0.00546673)0.9240:0.01061661)0.8880:0.06833111,(13:0.02713619,(12:0.02965959,(10:0.00383328,(11:0.00126924,(9:0.00126944,((2:0.0,7:0.00127383)0.7500:0.0,(1:0.00649868,(4:0.00255033,(6:0.0012862,8:0.00642879)0.7570:0.00126619)0.5400:0.00127651)0.0090:0.0)0.3010:0.00126918)0.3010:0.0)0.0800:0.0)0.6970:0.00851233)0.6510:0.023222)0.9240:0.08847146)0.9410:0.36157265)0.0000:0.8108666950000001); END;