#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on March 29, 2024; 16:00 GMT TreeBASE (cc) 1994-2008 Study reference: Espindola A., Carstens B.C., & Alvarez N. 2014. Comparative phylogeography of mutualists and the effect of the host on the genetic structure of its partners. Biological Journal of the Linnean Society, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S16187] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=24; TAXLABELS Chiastocheta_lophota_AMB29mi Chiastocheta_lophota_BAY5mi Chiastocheta_lophota_CDV35mi Chiastocheta_lophota_CHA17mt Chiastocheta_lophota_CHA25fs Chiastocheta_lophota_CHA42mi Chiastocheta_lophota_DON16mi Chiastocheta_lophota_DON17mi Chiastocheta_lophota_EPO24mi Chiastocheta_lophota_GAL12fd Chiastocheta_lophota_GAL35mi Chiastocheta_lophota_HT17mi Chiastocheta_lophota_LOS15fd Chiastocheta_lophota_LOS18fs Chiastocheta_lophota_LOS20mi Chiastocheta_lophota_PIL34mi Chiastocheta_lophota_PIL35mi Chiastocheta_lophota_PYS11mi Chiastocheta_lophota_PYS12mi Chiastocheta_lophota_PYS43fs Chiastocheta_lophota_PYS8mi Chiastocheta_lophota_SED15_1ln Chiastocheta_lophota_SED2mi Chiastocheta_lophota_SUS10mi ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M23758] TITLE 'Chiastocheta lophota Mitochondrial D-loop region'; LINK TAXA = Taxa1; DIMENSIONS NCHAR=279; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=N GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Chiastocheta_lophota_AMB29mi TATATTTTAGTGTATGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTT--ATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTT----TGTAA---TTTTTT----AAAAAAAAATAATTGAATTT-CTTT-CTTTTTTTATAAAAATTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Chiastocheta_lophota_BAY5mi TATATTTTAGTGTATGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTTT-ATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTCC----TTAT-GTAATT-------AAAAAAAATAATTGAGTTTCCTTTGTAATTTTTTAAAAAAAAATAATTGAATTTCTTTCTTTTTTTAT-AAAAA----- Chiastocheta_lophota_CDV35mi TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTTT-ATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTTC---TGTAA---TT-------AAAAAAAAAATAATNGNGTTNCCTTTGNAATTTTTTAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Chiastocheta_lophota_CHA17mt TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTTT-ATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTTC---TGTAA---TT-------AAAAAAAAAANAATTGAGTTTCCTTTGTAATTTTTNAAAAAAAAANAATTGAATTTCTTCNTTTTTTN---ANAAAAA--- Chiastocheta_lophota_CHA25fs TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTTT-ATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTTC---TGTAA---TT-------AAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Chiastocheta_lophota_CHA42mi TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTTT-ATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTTC---TGTAA---TT-------AAAAAAAAAATAATTGAGTTTCCTTTGTAATTTTTTAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Chiastocheta_lophota_DON16mi TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTT----AAAAA---TTTTTTTT--GTAATAATTGAGTTTCCTCC----TTTT---TTTTT-----AAAAAAAAATAATTAAGTTTCCTTTGTAATTTTT-AAAAAAAAATAATTAAGTTTCCTTTGTAATTTTT-AAAAAAAAAA Chiastocheta_lophota_DON17mi TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTT-----AAAAA---TTTTTTTT--GTAATAATTGAGTTTCCTCC----TTAA---TTTTT-----AAAAAAAAATAATTGAGTTTCCTTTGTAATTTTTAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Chiastocheta_lophota_EPO24mi TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTT--ATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTTC---TGTAA---TT-------AAAAAAAAAANAATTAAGTTTCCTTTGTAATTTTTTAAAAAAAAANAATTGAATTTCTTCCTTTTTTT---ANAAAAA--- Chiastocheta_lophota_GAL12fd TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTTTTATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTTC---TGTAA---TT-------AAAAAAAAAATAATTGAGTTTCCTTTGNAATTTTTAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Chiastocheta_lophota_GAL35mi TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTTTNATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTTC---TGTAA---TT------AAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Chiastocheta_lophota_HT17mi TATATTTTAGTGTATGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTTT-ATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTTC---TGTAA---TT-------AAAAAAAAAANAANNGANTTNCCTTNGTAATTTTTTAAAAAAAANTAATTGAATTNNNTTCTTTTTTNNNNNNNNNNNNNN Chiastocheta_lophota_LOS15fd TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTT-----AAAAA---TTTTTTTT--GTAATAATTGAGTTTCCTCC----TTAA---TTTTT-----AAAAAAAAATAATTAAGTTTCCTTTGTAATTTTTAAAAAAAAAANAATTGAATTTCCNCCTTTTTTT---AAAAA----- Chiastocheta_lophota_LOS18fs TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATAATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTT----AAAAA---TTTTTTTT--GTAATAATTGAGTTTCCTCC----TTAA---TTTTT-----AAAAAAAAATAATTGAGTTTCCTTTGTAATTTTTAAAAAAAAAATAATTGAATTTCCNCCTTTTTTT---AAAANN---- Chiastocheta_lophota_LOS20mi TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATAATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTT----AAAAA---TTTTTTTT--GTAATAATTGAGTTTCCTCC----TTAA---TTTTT-----AAAAAAAAATAATTGAGTTTCCTTTGTAATTTTTAAAAAAAAAANAATTGAATTTCCNCCTTTTTTT---AAAAA----- Chiastocheta_lophota_PIL34mi TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATNTTATNACATGATTNACCCTNNCAAGGTAATCCTTTTTATCNGGNNATTCATTTTT-----AAAAA---TTTTTTTT--GTAATAATTGAGNTTCCTCC----TTAA---TTTTT-------AAAANAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Chiastocheta_lophota_PIL35mi TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTTT---AAAA----TTTTTTTT--GTAATAATTGAGTTTCCTCC----TTAA---TTTTT-----AAAAAAAAATAATTAAGTTTCCTTTGTAATTTTTAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Chiastocheta_lophota_PYS11mi TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTTT-ATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTTC---TGTAA---TT--------AAAAAAAAATAATTGAGTTTCCTTTGTAATTTTTAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Chiastocheta_lophota_PYS12mi TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGA-----------------------------------------------------------------------------------------------------------AAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Chiastocheta_lophota_PYS43fs TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTTT-ATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTTC---TGTAA---TT--------AAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Chiastocheta_lophota_PYS8mi TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTT--ATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTTC---TGTAA---TT-------AAAAAAAAAANAATTGAGTTTCCTTTGTAATTTTTTAAAAAAAAANAATTGAATTNCTNCCTTTTTTT---ANAAAANNNN Chiastocheta_lophota_SED15_1ln TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTT--ATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTTC---TGTAA---TT----AAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Chiastocheta_lophota_SED2mi TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTT--ATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTTC---TGTAA---TT-------AAAAAAAAAATAATTAAGTTTCCTTTGTAATTTTTTAAAAAAAAANAATTGAATTTCTTCCTTTTTTT---ANAAAAANNN Chiastocheta_lophota_SUS10mi TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTTT-ATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTTC---TGTAA---TT---------AAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN ; END; BEGIN TREES; TITLE 'Chiastocheta lophota Mitochondrial D-loop region'; LINK TAXA = Taxa1; TRANSLATE 1 Chiastocheta_lophota_AMB29mi, 2 Chiastocheta_lophota_BAY5mi, 3 Chiastocheta_lophota_CDV35mi, 4 Chiastocheta_lophota_CHA17mt, 5 Chiastocheta_lophota_CHA25fs, 6 Chiastocheta_lophota_CHA42mi, 7 Chiastocheta_lophota_DON16mi, 8 Chiastocheta_lophota_DON17mi, 9 Chiastocheta_lophota_EPO24mi, 10 Chiastocheta_lophota_GAL12fd, 11 Chiastocheta_lophota_GAL35mi, 12 Chiastocheta_lophota_HT17mi, 13 Chiastocheta_lophota_LOS15fd, 14 Chiastocheta_lophota_LOS18fs, 15 Chiastocheta_lophota_LOS20mi, 16 Chiastocheta_lophota_PIL34mi, 17 Chiastocheta_lophota_PIL35mi, 18 Chiastocheta_lophota_PYS11mi, 19 Chiastocheta_lophota_PYS12mi, 20 Chiastocheta_lophota_PYS43fs, 21 Chiastocheta_lophota_PYS8mi, 22 Chiastocheta_lophota_SED15_1ln, 23 Chiastocheta_lophota_SED2mi, 24 Chiastocheta_lophota_SUS10mi; TREE 'D-loop' = [&R] (1:0.2832523,((2:0.02893701,12:0.01337185):1.9110007E-7,((14:1.0E-8,15:1.0E-8):0.00446397,(16:1.0E-8,(19:1.0E-8,(13:0.00464315,(8:1.0E-8,(7:0.11179525,(9:1.0E-8,(21:0.00489585,(23:1.0E-8,(22:1.0E-8,(17:0.03524598,(24:1.0E-8,(20:1.0E-8,(18:0.00724925,(4:1.0E-8,(5:1.0E-8,(3:1.0E-8,(6:1.0E-8,(10:1.0E-8,11:1.0E-8):0.00729789):1.0E-8):1.2420167E-7):2.5789739E-8):1.0E-8):0.0):1.2702276E-7):0.00502443):0.0):1.3055449E-7):1.0E-8):1.0E-8):0.03161793):5.7830754E-8):1.0E-8):1.0E-8):1.0E-8):1.0E-8):0.02299691):0.2832523); END;