#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 25, 2024; 11:52 GMT TreeBASE (cc) 1994-2008 Study reference: Bardin J., Rouget I., & Cecca F. 2014. Ontogenetic data analyzed as such in phylogenies. Systematic Biology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S16472] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=25; TAXLABELS Amaltheus_bifurcus Amaltheus_conspectus Amaltheus_gibbosus Amaltheus_gloriosus Amaltheus_gloriosus_morph._W Amaltheus_repressus Amaltheus_salebrosus Amaltheus_stokesi Amaltheus_striatus Amaltheus_subbifurvus Amaltheus_subnodosus Amaltheus_talrosei Amaltheus_viligaensis Amaltheus_wertheri Amauroceras_ferruginum Oistoceras_figulinum Pleuroceras_apyrenum Pleuroceras_becheteri Pleuroceras_hawskerense Pleuroceras_paucicostatum Pleuroceras_quadratum Pleuroceras_solare Pleuroceras_spinatum Pleuroceras_transiens Pleuroceras_yeovilense ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M35906] TITLE Amaltheidae_without_ontogeny; LINK TAXA = Taxa1; DIMENSIONS NCHAR=22; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3 4 5 6 7 8 9 A B C D E F G H I J K L M N O P Q R S T U V" MISSING=? GAP= -; CHARSTATELABELS 1 Uw, 2 WbWh, 3 Size_ad_max, 4 Ribs, 5 Chev.D, 6 angle_Rib_Chev, 7 Tub_Type, 8 sulci, 9 Pres_engel, 10 Orn_spiral, 11 VLE.A, 12 rounded_venral_area, 13 Perlatum, 14 Con_Chev_Rib, 15 thick_chevrons, 16 Keel_individualisation, 17 Keel_chevrons, 18 Keel_cordated, 19 AccessSaddle, 20 OrnemSut, 21 Pre_Tub_Complex, 22 constrictions, ; MATRIX [ 10 20 ] [ . . ] Amaltheus_bifurcus CD2204?0000001?00010?0 Amaltheus_conspectus 0AFF?A?0010101101010?1 Amaltheus_gibbosus 6HLI573011001001101010 Amaltheus_gloriosus 79JB4B1011001001101000 Amaltheus_gloriosus_morph._W 5CKD7C2011001001101010 Amaltheus_repressus 8?CL?2?00?0001001010?1 Amaltheus_salebrosus DKNK?83011001001101010 Amaltheus_stokesi 3EHO11?0010001001010?0 Amaltheus_striatus A6I7?5?011001001101000 Amaltheus_subbifurvus ?5B83E?00?0001101010?0 Amaltheus_subnodosus B83G66?001001001101000 Amaltheus_talrosei 9FEJ2D?00?0001101010?0 Amaltheus_viligaensis 4J7M?F?0010101101010?0 Amaltheus_wertheri 1304?3?0010001001010?0 Amauroceras_ferruginum 2110???001000??01010?0 Oistoceras_figulinum H041?0?0001001?00010?0 Pleuroceras_apyrenum IGAA???1111010?1110100 Pleuroceras_becheteri G?D6893011101001101110 Pleuroceras_hawskerense LLMC???1??1010?1110100 Pleuroceras_paucicostatum ?469???20?1010?1110100 Pleuroceras_quadratum E?93???0111010?1110100 Pleuroceras_solare F28E???0111010?1110100 Pleuroceras_spinatum J7OH???20?1010?1110100 Pleuroceras_transiens ?B55???011101001101100 Pleuroceras_yeovilense KIGN???20?1010?1110100 ; END; BEGIN ASSUMPTIONS; WTSET myweighs = 1000: 7-22 , 1: 1-6 ; WTSET * UNTITLED = 1000: 7-22 , 1: 1-6 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M35905] TITLE Amaltheidae_with_ontogeny; LINK TAXA = Taxa1; DIMENSIONS NCHAR=33; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3 4 5 6 7 8 9 A B C D E F G H I J K L M N O P Q R S T U V" MISSING=? GAP= -; CHARSTATELABELS 1 Type_of_shape_growth, 2 Slope_of_Uw, 3 Uw_sigma1, 4 'Uw K (saturation growth law)', 5 'Uw K (linear growth)', 6 WbWh_sigma1, 7 'WbWh k (saturation growth law)', 8 'WbWh k (linear growth)', 9 Size_adult_maximum, 10 'Ventro-lateral edge on adult body chamber', 11 'Ventro-lateral edge on phragmocone', 12 Rounded_venral_area, 13 Sulci, 14 Ribbing_density_sigma1, 15 Ribbing_density_k, 16 Perlatum_stage, 17 Perlatum_stage_extension, 18 Complex_Perlatum_stage_, 19 Type_of_tubercles_in_the_complex_Perlatum_stage, 20 Extension_of_the_complex_Perlatum_stage, 21 Engelhardti_stage, 22 Length_of_Engelhardti_stage, 23 Spiral_ornamentation, 24 Connection_between_chevrons_and_ribs, 25 angle_between_umbilical_and_ventral_segments_of_ribs., 26 Large_chevrons, 27 Chevrons_density, 28 Individualized_keel, 29 Keel_with_chevrons, 30 Cordated_keel_, 31 Accessory_saddle, 32 Complexity_of_the_suture_line_ornamentation, 33 constrictions, ; MATRIX [ 10 20 30 ] [ . . . ] Amaltheus_bifurcus 117A?85?20100GK0????0?014?0000100 Amaltheus_conspectus 01??1??2F0110000????0?11A1?010101 Amaltheus_gibbosus 1146?57?L0000D9111321310705110100 Amaltheus_gloriosus 1101?44?J0000JI110101310B04110100 Amaltheus_gloriosus_morph._W 1135?26?K0000BC111211310C07110100 Amaltheus_repressus 01??????C0100110????0??120?010101 Amaltheus_salebrosus 118G?90?N00002611133121080?110100 Amaltheus_stokesi 116F?6D?H0100CE0????0?11101010100 Amaltheus_striatus 11???13?I000055100??131050?110100 Amaltheus_subbifurvus 01??0??0B0100HF0????0??1E13010100 Amaltheus_subnodosus 1153?38?30000IJ110??0?10606110100 Amaltheus_talrosei 01??2??1E0100940????0??1D12010100 Amaltheus_viligaensis 01??3??370110FG0????0?11F1?010100 Amaltheus_wertheri 111D?02?00000MN0????0?1130?010100 Amauroceras_ferruginum 112C?7G?10000NM0????0?1????010100 Oistoceras_figulinum 00??4??441100LH0????0?010??000100 Pleuroceras_apyrenum 12G0?BE?A1101421?0??1110???111010 Pleuroceras_becheteri 12AE????D1100AD111341210908110110 Pleuroceras_hawskerense 12F2?DF?M110167120?????0???111010 Pleuroceras_paucicostatum 12E9?G9?6110233130??0??0???111010 Pleuroceras_quadratum 12??????91100??120??1110???111010 Pleuroceras_solare 12C4?AC?81100EB120??1110???111010 Pleuroceras_spinatum 12B8?FB?O11028A130??0??0???111010 Pleuroceras_transiens 129B?CA?51100KL120??1110?0?110110 Pleuroceras_yeovilense 12D7?E1?G110278130??0??0???111010 ; END; BEGIN ASSUMPTIONS; WTSET myweighs = 1000: 1-2 10-13 16-19 21-24 26 28-33 , 1: 3-9 14-15 20 25 27 ; WTSET * UNTITLED = 1000: 1-2 10-13 16-19 21-24 26 28-33 , 1: 3-9 14-15 20 25 27 ; END; BEGIN TREES; TITLE Amaltheidae_with_ontogeny; LINK TAXA = Taxa1; TRANSLATE 1 Oistoceras_figulinum, 2 Amaltheus_bifurcus, 3 Amaltheus_stokesi, 4 Amaltheus_talrosei, 5 Amaltheus_subbifurvus, 6 Amaltheus_repressus, 7 Amaltheus_conspectus, 8 Amaltheus_viligaensis, 9 Amaltheus_wertheri, 10 Amauroceras_ferruginum, 11 Amaltheus_subnodosus, 12 Amaltheus_striatus, 13 Amaltheus_gloriosus, 14 Amaltheus_gloriosus_morph._W, 15 Amaltheus_gibbosus, 16 Amaltheus_salebrosus, 17 Pleuroceras_becheteri, 18 Pleuroceras_transiens, 19 Pleuroceras_solare, 20 Pleuroceras_quadratum, 21 Pleuroceras_apyrenum, 22 Pleuroceras_spinatum, 23 Pleuroceras_hawskerense, 24 Pleuroceras_paucicostatum, 25 Pleuroceras_yeovilense; TREE With_ontogeny = [&R] (1,2,((3,(((4,5),(7,8)),6)),((9,10),(11,((12,(14,(15,(16,(17,(18,(19,20,((21,23),(22,(24,25)))))))))),13))))); END; BEGIN TREES; TITLE Amaltheidae_without_ontogeny; LINK TAXA = Taxa1; TRANSLATE 1 Oistoceras_figulinum, 2 Amaltheus_bifurcus, 3 Amaltheus_stokesi, 4 Amaltheus_talrosei, 5 Amaltheus_subbifurvus, 6 Amaltheus_repressus, 7 Amaltheus_conspectus, 8 Amaltheus_viligaensis, 9 Amaltheus_wertheri, 10 Amauroceras_ferruginum, 11 Amaltheus_subnodosus, 12 Amaltheus_striatus, 13 Amaltheus_gloriosus, 14 Amaltheus_gloriosus_morph._W, 15 Amaltheus_gibbosus, 16 Amaltheus_salebrosus, 17 Pleuroceras_becheteri, 18 Pleuroceras_transiens, 19 Pleuroceras_solare, 20 Pleuroceras_quadratum, 21 Pleuroceras_apyrenum, 22 Pleuroceras_spinatum, 23 Pleuroceras_hawskerense, 24 Pleuroceras_paucicostatum, 25 Pleuroceras_yeovilense; TREE Without_ontogeny = [&R] (1,2,(((3,6),(((4,(7,8)),5),(11,((12,13),(14,((15,16),(17,(18,((19,((21,23),((22,25),24))),20))))))))),(9,10))); END;