#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on March 29, 2024; 8:51 GMT TreeBASE (cc) 1994-2008 Study reference: Maxfield-taylor S., Mujic A.B., & Rao S. 2015. First Detection of the Larval Chalkbrood Disease Pathogen Ascosphaera apis (Ascomycota: Eurotiomycetes: Ascosphaerales) in Adult Bumble Bees. PLoS ONE, 10(4): e0124868. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S16737] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=26; TAXLABELS Ascosphaera_acerosa_U68321 Ascosphaera_aggregata_U68323 'Ascosphaera apis ATCC_MYA4450_FJ172292' 'Ascosphaera apis ATCC_MYA4451_FJ172293' Ascosphaera_apis_U68313 'Ascosphaera apis USDAARSEF_7405' Ascosphaera_asterophora_U68322 Ascosphaera_atra_U68314 Ascosphaera_celerrima_U68325 Ascosphaera_colubrina_U68320 Ascosphaera_duoformis_U68316 Ascosphaera_flava_U68332 Ascosphaera_fusiformis_U68324 Ascosphaera_larvis_U68330 Ascosphaera_major_U68315 Ascosphaera_naganensis_U68327 Ascosphaera_osmophila_U68317 Ascosphaera_pollenicola_U68329 Ascosphaera_proliperda_U68318 Ascosphaera_solina_U68328 Ascosphaera_subcuticulata_U68331 Ascosphaera_variegata_U68319 Ascosphaera_xerophila_U68326 Aspergillus_terreus_NIH2624 Fungal_Culture_A1 Fungal_Culture_A2 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M37122] TITLE Ascosphaera_ITS_Alignment; LINK TAXA = Taxa1; DIMENSIONS NCHAR=729; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Ascosphaera_acerosa_U68321 -------------------------------CTGTGTGTCTGTACGGTC---------TGGC-------TTATCGCCGG--GCGTGCACTCCCACCCTTGTCTA-CTTACC-TGTTGC-TTTGGCGGACCTGC--GGG-TGC----TTGCACTTGCTGCCGGGAAGACGGTCTCGTC-------------------------------------TCCGGGCTCG--TGTCCGCC-GAAGATC--ACT--GAACTCCGATCG--AAGATT---GAAGTCTGAAGAAC---AAAGAT-TA--A-TAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-TGGCTTGTGTGATGGGTGATCGT--CC----------TGTCTTT--GGAAGGACGCACCTGAAAAGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTTGTCT-TCCGCTCTTGTGGCCTGGCCGACTTGTCCGGTC-TATACCAA------------------------CTTCTCGT--------GG------------------------------------------------ Ascosphaera_aggregata_U68323 -------------------------------ACGTGTGTCTGTGCGGTGCTTCCCGGGCTTT------CCCCGGGGGGC--TCGCGCACTCCCACCCTTGTCTACCTGACC-TGTTGC-TTCGGCGGGCCTGC--GGGCTTT----ACACGCCCGCTGCCGGGAAAAGACCCTCGAC-------------------------GAGGGGGTCTCGTCCGGGCTCG--CGCCCGCC-GGAGGTA--AAC--GAACTCCAGTCG--AAGTATCTTGCAGTCTGAAGAAACA--AAGATTTA--A-TAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGCGTGTTGGGCGACCGT--CC----------CGTCTTC--GGAGGGACGCGCCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTCGTCT-TCCGCTCCTGTGGCCCGGCCGACT-GTCCGGTC-GA-ACCCAAGATCAATCATGTTCTTTTTTGTTTTTACAGT--------GG------------------------------------------------ 'Ascosphaera apis ATCC_MYA4450_FJ172292' TCCGTAGGTGAACCTGCGGAAGGATCAT-TAATGTGTGTCTGTGCGGCT-AGGT-GCCCCT----AAAC--AAGGCCCT-GCCGCGCACTCCCACCCTTGTCTACCTTACC-TGTTGC-TTCGGCGGGCCTGC--GGGTTCT---CGCGAGCCTGCTGCCGGAGGGG--TTAGTTCCC------------------------------------CCCTGGCTAG--CGTCCGCC-GAAGATA--AAC--GAACTCCAGTCG--AAGATT---GAAGTCTGAAGAAAATT---GAT--A--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTGTGTTGGGCGATCGT--CC----------CGTCTTA--GGAGGGACGCGCCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTTGTCT-TTCGCTCTAGTGGCCTGGCCGACT-GTCCGGTC-TA-ACCATCATTTA------------------CTTCTAGT--------GGTTGACCTCGGATCAGGTAGGGTTACCCGCTGAACTTAAG--------- 'Ascosphaera apis ATCC_MYA4451_FJ172293' -------------------------------ATGTGTGTCTGTGCGGCT-AGGT-GCCCCT----AAAC--AAGGCCCT-GCCGCGCACTCCCACCCTTGTCTACCTTACC-TGTTGC-TTCGGCGGGCCTGC--GGGTTCT---CGCGAGCCTGCTGCCGGAGGGG--TTAGTTCCC------------------------------------CCCTGGCTAG--CGTCCGCC-GAAGATA--AAC--GAACTCCAGTCG--AAGATT---GAAGTCTGAAGAAAATT---GAT--A--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTGTGTTGGGCGATCGT--CC----------CGTCTTA--GGAGGGACGCGCCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTTGTCT-TTCGCTCTAGTGGCCTGGCCGACT-GTCCGGTC-TA-ACCATCATTTA------------------CTTCTAGT--------GG------------------------------------------------ Ascosphaera_apis_U68313 -------------------------------ATGTGTGTCTGTGCGGCT-AGGT-GCCCCT----AAAC--AAGGCCCT-GCCGCGCACTCCCACCCTTGTCTACCTTACC-TGTTGC-TTCGGCGGGCCTGC--GGGTTCT---CGCGAGCCTGCTGCCGGAGGGG--TTAGTTCCC------------------------------------CCCTGGCTAG--CGTCCGCC-GAAGATA--AAC--GAACTCCAGTCG--AAGATT---GAAGTCTGAAGAAAATT---GAT--A--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTGTGTTGGGCGATCGT--CC----------CGTCTTA--GGAGGGACGCGCCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTTGTCT-TTCGCTCTAGTGGCCTGGCCGACT-GTCCGGTC-TA-ACCATCATTTA------------------CTTCTAGT--------GG------------------------------------------------ 'Ascosphaera apis USDAARSEF_7405' -------------------A-GGATCAT-TAATGTGCCTCTTTGCGGCT-AGGT-GCCCCT----AAAC--AAGGCCCT-GCCGCGCACTCCCACCCTTGTCTACCTTACC-TGTTGC-TTCGGCGGGCCTGC--GGGTTCT---CGCGAGCCTGCTGCCGGAGGGG--TTAGTTCCC------------------------------------CCCTGGCTAG--CGTCCGCC-GAAGATA--AAC--GAACTCCAGTCG--AAGATT---GAAGTCTGAAGAAAATT---GAT--A--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTGTGTTGGGCGATCGT--CC----------CGTCTTA--GGAGGGACGCGCCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTTGTCT-TTCGCTCTAGTGGCCTGGCCGACT-GTCCGGTC-TA-ACCATCATTTA------------------CTTCTAGT--------GGTTGACCTCGGATCAGGTAGGGTTACCCGCTGAACTTAAGCATATCAAT Ascosphaera_asterophora_U68322 -------------------------------ACGTGTGTCTGTACGGTC---------TGGT-------CAATCGCCGG--CCGTGCACTCCCACCCTTGTCTATCTTACC-TGTTGC-TTTGGCGGACCTGC--GGG-TGC----TTGCACCTGCTGCCGGGATGGCGTTTGCGTC-------------------------------------TCCGGGCTCG--CGTCCGC--GAAGGTT--ATT--GAACTCCGATCG--AAGATT---GAAGTCTGAAGAAT---AAAGAT-TA--A-TAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTGTGATGGGTGATCGT--CC----------TGTCTTT--GGAAGGACGCACCTGAAAAGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTTGTCT-TCCGCTCTTGTGGCCTGGCCGACTTGTCCGGTC-GATACCAT--------------CTTTTT-------CTCGT--------GG------------------------------------------------ Ascosphaera_atra_U68314 -------------------------------CTGTGTGTTTGTGCGGC---------CTTC-----A----CCGG------CCGCGCACTCCCACCCTTGTCTACCTTACC-TGTTGC-TTCGGCGGGCCTGC--GGTTGGCCTGCGTGCCGCCGCTGCCGGGGGGC-CTTTTCGGTC------------------------------------CCCGGGCGCG-CTGCCCGCC-GAAGGAA--ACT--GAACTCCAGTCG--AAGATT---GAAGTCTGAGATAGATT---GAG--A--AATAACTCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTGTGTTGGGCGATCGT--CC----------TGTCCGTGAGGCGGGACGCACCCGAAAGGCAGTGAC-GGCGT-CGTGATCCGGTGCCCGAGCGCATGGAACTTGAA---CCCGCTCGTGAGGCCTGGCCGACC-GTC-GGTC-CA-ACCATCTACTA------------------CTTCCAGT--------GG------------------------------------------------ Ascosphaera_celerrima_U68325 -------------------------------ATGTGTGTCTGTGCTGTC-CGGT-GCCCTT----AAAC--AAGGCCCG-GCAGCGCACTCCCACCCTTGTCTATCTTACC-TGTTGC-TTCGGCGGGCCTGC--GGGCTTT---GACGAGCCTGCTGCCGGAGGGGATCTTCTTCCC------------------------------------CCCTGGCTCG--CGTCCGCC-GAAGATA--CAT--GAACTCCAGTCG--AAGAAT---GAAGTCTGAAGAAAATT---GAT--A--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTTTGTTGGACGATCGT--CC----------CGTCTTA--GGAGGGACGCGTCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTCGTCT-TCCGCTCTAGTGGCCTGGCCGACT-GTCCGGTC-GA-AACGTCAACTA---------TTTTTTTT----CT-GT--------GG------------------------------------------------ Ascosphaera_colubrina_U68320 -------------------------------ACGTGTGTCTGTGCGGTT-CGGTCGCCCCT----AAAA--AAGGCCCGAGCCGCGCACTCCCACCCTTGTCTATCTCACC-TGTTGC-TTCGGCGGGCCTGC--GGGCTT-------ATGCCTGCTGCCGGAGGG----TTAACGCC------------------------------------CCCTGGCTCG--CGTCCGCC-GAAGACA--AAC--GAACTCCAGTCG--AAGATT---GAAGTCTGAAGAATTTT---GAT--A--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTTTGTTGGACGATCGT--CC----------CGTCTTA--GGAGGGACGCGTCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTCGTCT-TCCGCTCTTGTGGCCTGGCCGACT-GTCCGGTC-GA-ACCAACCATTA---------TTTTTTT-----CT-GT--------GG------------------------------------------------ Ascosphaera_duoformis_U68316 -------------------------------CTGTGTGTTTGTGCGGC---------CTTC-----A----CCGG------CCGCGCACTCCCACCCTTGTCTACCTTACC-TGTTGC-TTCGGCGGGCCTGC--GGTTGGCCTGCGTGCCGCCGCTGCCGGGGGGC-CTTTTCGGTC------------------------------------CCCGGGCTCG-CTGCCCGCC-GAAGGAA--ACT--GAACTCCAGTCG--AAGATT---GAAGTCTGAGATAGATT---GAG--A--AATAACTCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTGTGTTGGGCGATCGT--CC----------TGTCCGTGAGGCGGGACGCACCCGAAAGGCAGTGAC-GGCGT-CGTGATCCGGTGCCCGAGCGCATGGACCTTGAAGAACCCGCTCGTGAGGCCTGGCCGACC-GTC-GGTC-CA-ACCATCTACTA------------------CTTCCAGT--------GG------------------------------------------------ Ascosphaera_flava_U68332 -------------------------------ACGTGTGTCTGTGCGGTT-CGTTCGCCCCT----AAAA--AAGGCCCGAGCCGCGCACTCCCACCCTTGTCTATCTCACC-TGTTGC-TTCGGCGGGCCTGC--GGGCTC-------AGGC-TGCTGCTGGAGGG----TCAACGCC------------------------------------CCCTGGCTCG--CGTCCGCC-GAAGACG--AAC--GAACTCCAGTCG--AAGATT---GAAGTCTGAAGAAAATT---GAT--A--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTTTGTTG-ACGAACGT--CC----------CGTCTTA--GGAGGGACGCGTCCCAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTCGTCT-TCCGCTCTTGTGGCCTGGCCGACT-GTCCGGTC-GA-ACCAACCA--A---------TTGTTTT-----CT-GT--------GG------------------------------------------------ Ascosphaera_fusiformis_U68324 -------------------------------ACGTGTGTCTGTGCGGTTTCGGGCCCCCCTCCCCAAACGGAGGGACCTGTGCGCGCACTCCCACCCTTGTCTACCTTACC-TGTTGC-TTCGGCGGGCCTGC--GGGTCT------CGCACCCGCTGCCGGGACA---------CTG------------------------------------TCCGGGCTCG--CGTCCGCC-GAAGGTA--AAC--GAACTCCAGTCG--AAGTTT---GAAGTCTGAAGAAAATT---GAT--A--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGCGTGTTGAGCGACCGT--CC----------CGTCTTC--GGAGGGACGCGCTCGAAAAGCAGTGAC-GGCGT-CGTGATCCGGTGCCCGAGCGTATGGGGCTTCGTCT-TCCGCTCTTGTGGCCCGGCCGACT-GTCCGGTC-GA-ACCAGCTATCA---------------TCACATCTAGT--------GG------------------------------------------------ Ascosphaera_larvis_U68330 ------------------------------AGCGTGTGTCTGTGCGGTT-CGGTCGCCCCT----AAAA--AAGGCCCGAGCCGGGCACTCCCACCCTTGTCTATCTCACC-TGTTGC-TTCGGCGGGCCTGC--GGGCTT-------ATGCCTGCTGCCGGAGGG----TTAACGCC------------------------------------CCCTGGCTCG--CGTCCGCC-GAAGACA--AAC--GAACTCCAGTCG--AAGATT---GAAGTCTGAAGAAAATT---GAT--A--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTTTGTTGGACGATCGT--CC----------CGTCTTA--GGAGGGACGCGTCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTCGTCT-TCCGCTCTTGTGGCCTGGCCGACT-GTCCGGTC-GA-ACCAACTATTA---------TTTTTT------CT-GT--------GG------------------------------------------------ Ascosphaera_major_U68315 -------------------------------ACGTGTGTCTGTGCGGTT-CGGTCGCCCCT----AAAA--AAGGCCCGAGCCGCGCACTCCCACCCTTGTCTATCTCACC-TGTTGC-TTCGGCGGGCCTGC--GGGCTT-------ATGCCTGCTGCCGGAGGG----TTAACGCC------------------------------------CCCTGGCTCG--CGTCCGCC-GAAGACA--AAC--GAACTCCAGTCG--AAGATT---GAAGTCTGAAGAAAATT---GAT--A--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTTTGTTGGACGATCGT--CC----------CGTCTTA--GGAGGGACGCGTCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTCGTCT-TCCGCTCTTGTGGCCTGGCCGACT-GTCCGGTC-GA-ACCAACCATTA---------TTTTTT------CT-GT--------GG------------------------------------------------ Ascosphaera_naganensis_U68327 -------------------------------CTGTGTGTTTGTGCGGCG-----TCGCCTT-----A----ACGGTTCG--CCGCGCACTCCCACCCTTGTCTACCTTACC-TGTTGC-TTCGGCGGGCCTGC--GACTT---------CGGTTGCTGCCGGGGGGC-CTCTGAGGCT------------------------------------CCCGGGCTCGTCTGCCCGCC-GAGGAAA--ACT--GAACTCCAGTCG--AAGTAT---GATGTCTGAGAAAAATTTTTGAT--A--AATTAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGCGTGTTGGGCGACCGT--CC----------CGTCTTC--GGAGGGACGCGCCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTTGTCA-CTCGCTGTAGTGGTCCGGCCGACA-GTCTGGTC-TA-ACCCGGCGGTAGTTCTCT-ACTGCCACACCTTCTAGT--------GG------------------------------------------------ Ascosphaera_osmophila_U68317 -------------------------------A-GTGTGTCTGTGCGGT--CT------TCGT-------TCCCGGTTGC--CGG---ACTCC-ACCGTT--CTACCTTACC-TGTTGCCTTCGGCGGACC-GT--GGGCTTC----CAAAGCCTGCTGCCGGGAACGAACCCCCTCTCTCCTCTCCCCTCCGGGAGTAGAGGGAGGGGGATCCGTCCGGGCTCG--CGTCCGCC-GGAGGTA--AAC--GAACTCCAGTTG--AAGCATTT-GCAGTCTGAAGAAT---AAAGATTTA--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCAACGGCTTGTGTGTTGGGCGATCGT--CC----------CGTCTAC--GGAGG-ACGCGCCCGAAAGGCAGTGAC-GGCGTACGTGTTCCGGTGCCCGATCGTATGGGGCTTCGTCT-TCCGCTCTTGTGGCCCGGCCGACT-GACCGGTC-GA-ACCCA-GGTCT-TTCACGGCCTATTTTAC--TCCAGT--------GG------------------------------------------------ Ascosphaera_pollenicola_U68329 -------------------------------ACGTGTGTCTGTGCGGTT-CGGTTGCCCCT----AAAA--AAGGCCCGAGCCGCGCACTCCCACCCTTGTCTATCTCACC-TGCTGC-TTCGGCGGGCCTGC--GGGCTT-------ATGCCTGCTGCCGGAGGG----TTAACGCC------------------------------------CCCTGGCTCG--CGTCTGCC-GAAGACA--AAC--GAACTCCAGTCG--AAGATT---GTAGTCTGAAGAAAATT---GAT--A--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CTGCTTGTTTGTTGGACGATCGT--CC----------CGTCTTA--GGAGGGACGCGTCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTCGTCT-TCCGCTCTTGTGGCCTGGCCGACT-GTCCGGTC-GA-ACCAACTATTA---------TTTTTT------CT-GT--------GG------------------------------------------------ Ascosphaera_proliperda_U68318 -------------------------------ACGTGTGTCTGTGCGGTGCTTTCCCGGTACT-------CCCGGGTTGC--CCGCGCACTCCCACCCTTGTCTATCTCACC-TGTTGC-TTCGGCGGACCTGC--GGGCCTT----CGTGGCCTGCTGCCGGGAAGAGGAGCCTC---------------------------ACGGCTTCCCAGTCCGGGCTCG--CGTCCGGC-GGAGGTA--ATT--GAACTCCAGTCG--AAGCATTT-GCAGTCTGAAGAAT---AAAGATTTA--A-TAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGCGTGTTGGGCGGTCGT--CC----------CGTCTTC--GGAGGGACGCGTCCGAAAAGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTCGTCT-TCCGCTCCTGTGGCCCGGCCGACT-GTCCGGTC-GA-ACCCA-GATCAATCATCGTC------------TCAGT--------GG------------------------------------------------ Ascosphaera_solina_U68328 -------------------------------ATGTGTGTCTGTGCGGG--CGCTCGGATCTC-------CCCGGGGTGC--CGGCGCACTCCCACCCTTGTCTACCTTACC-TGTTGC-TTCGGCGG-CCTGC--AGGCCTA----CGT-GCCTGCTGCCGGGAAT--ACCCTC----------------------------GAGGGGG--TCGTCCGGGCTTG--CGTCCGCC-GGAGGTG--TAT--GAACTCCAGTCG--AAGTTTTTTGCAGTCTGAAGAAT---AAAGATTTA--A-TAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTGTGTTGGGCGATCGT--CC----------CGTCTTC--GGAGGGACGCGTCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTCGTCT-TCCGCTCTTGTGGCCCGGCCGACT-GTCCGGTC-GA-ACCCA-GATCA----------------ATCTTC-AGT--------GG------------------------------------------------ Ascosphaera_subcuticulata_U68331 -------------------------------ACGTGTGTCTGTGCGGTGCTTCCCGGGCTTTA-----CCCCCCGGGGC--GCTTGCACTCCCACCCTTGTCTACCTGACC-TGTTGC-TTCGGCGGGTCTGC--GGGCTTC----ACGTGCCC-CTGCCGGGAAAAGACCCTTGAC-------------------------GAGAGG-TCTCGTCCGGGCTCG--CGTCCGCC-GGAGTTA--A-C--GAACTCCAGTCG--AAGTATCTTGCAGTCTGAAGAAACACAAAGATCTA--A-TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAATCCTCAAGCA-CGGCTTGCGTGTTGGGCGACCGT--CC----------CGTCTTT--GGAGGGACGCGCCCCAAAGGCACTGAC-GGCGT-CGCGTTCCGGTGCCCGAGCGTATGGGGCTTCGTCT-TCCGCTCCTGTGGCCCGGCCGACT-GTCCGGTC-GA-ACCCAAGATCAATCATGTTCTTTT------CAACAGT--------GG------------------------------------------------ Ascosphaera_variegata_U68319 -------------------------------ACGTGTGTCTGTGCGGT--CGGTCGCCCCT----AAAA--AAGGCCCGAGCCGCGCACTCCCACCCTTGTCTATCTCACC-TGTTGC-TTCGGCGGGCCTGC--GGGCTT-------ATGCCTGCTGCCGGAGGG----TTAACGCC------------------------------------CCCTGGCTCG--CGTCCGCC-GAAGACA--AAC--GAACTCCAGTCG--AAGATT---GAAGTCTGAAGAATTTT---GAT--A--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTTTGTTGGACGATCGT--CC----------CGTCTTA--GGAGGGACGCGTCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTCGTCT-TCCGCTCTTGTGGCCTGGCCGACT-GTCCGGTC-GA-ACCAACCATTA---------TTTTTTT-----CT-GT--------GG------------------------------------------------ Ascosphaera_xerophila_U68326 -------------------------------CCGTGTGTTTGTGCGGCG-----TGCCCCT-----AAA--CAAGGCCG--CCGCGCACTCCCACCCGTGTCTACCTTACC-GGTTGC-TTCGGCCGGTCGGG--CCCCTAC--AAAGGCCGCTGCCGGGGGGATGG-TTAATACCCT------------------------------------CCCTGGCTCG-CTGCCCGCC-GAAGGAA--ACA--GAACTCCAGTCG--AAGTAT---GATGTCTGAAGGAAAACG--AGT--A--ATAAACTCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTGTGTTGGGCGACCGT--CCGCTGCCTGGTCTTCTCCAGGCCTGCGGACGCCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGG--TTT-TCT-CTCGCTCCAGTGGCCCGGCCGGCA-GTCCGGTCCCA-ACCAA-T-TTA------------------CTTCTAGT--------GG------------------------------------------------ Aspergillus_terreus_NIH2624 --------------------------------------------------------------------------------GCCCAACCTCCCACCCGTGACTATTGTACCT-TGTTGC-TTCGGCGGGCCCGCCAGCGTT----------GCTGGCCGCCGG-GGGG--CGACTCGCC------------------------------------CCCGGGCCCG--TGCCCGCC-GGAGACCCCAACATGAACCCTGTTCTGAAAGCTT---GCAGTCTGAGTGTGATT---CTT--TGCAATCAGTTAAAACTTTCAACAATGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCAAGCC-CGGCTTGTGTGTTGGGCCCTCGTCCCC----------CGGCTCC--CGGGGGACGGGCCCGAAAGGCAGCGGCGGGCAC-CGCG-TCCGGTCCTCGAGCGTATGGGGCTTCGTCT-TCCGCTCCGTAGGCCCGGCCGGC---GCCCGCCGACGCATTTATTTGC------------------AACTTGTTTTTTTCCAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAAT Fungal_Culture_A1 ------------CCTGCGGA-GGATCAT-TAATGTGTGTCTGTGCGGCT-AGGT-GCCCCT----AAAC--AAGGCCCT-GCCGCGCACTCCCACCCTTGTCTACCTTACC-TGTTGC-TTCGGCGGGCCTGC--GGGTTCT---CGCGAGCCTGCTGCCGGAGGGG--TTAGTTCCC------------------------------------CCCTGGCTAG--CGTCCGCC-GAAGATA--AAC--GAACTCCAGTCG--AAGATT---GAAGTCTGAAGAAAATT---GAT--A--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTGTGTTGGGCGATCGT--CC----------CGTCTTA--GGAGGGACGCGCCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTTGTCT-TTCGCTCTAGTGGCCTGGCCGACT-GTCCGGTC-TA-ACCATCATTTA------------------CTTCTAGT--------GGTTGACCTCGGATCAGGTAGGGTTACCCGCTGAACTTAAGCATATCATA Fungal_Culture_A2 -------------------------CATGTAATGTGTGTCTGTGCGGCT-AGGT-GCCCCT----AAAC--AAGGCCCT-GCCGCGCACTCCCACCCTTGTCTACCTTACC-TGTTGC-TTCGGCGGGCCTGC--GGGTTCT---CGCGAGCCTGCTGCCGGAGGGG--TTAGTTCCC------------------------------------CCCTGGCTAG--CGTCCGCC-GAAGATA--AAC--GAACTCCAGTCG--AAGATT---GAAGTCTGAAGAAAATT---GAT--A--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTGTGTTGGGCGATCGT--CC----------CGTCTTA--GGAGGGACGCGCCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTTGTCT-TTCGCTCTAGTGGCCTGGCCGACT-GTCCGGTC-TA-ACCATCATTTA------------------CTTCTAGT--------GGTTGACCTCGGATCAGGTAGGGTTACCCGCTGAACTTAAGCATATC--- ; END; BEGIN TREES; TITLE Ascosphaera_Bayesian_Consensus; LINK TAXA = Taxa1; TRANSLATE 1 Ascosphaera_apis_U68313, 2 Ascosphaera_atra_U68314, 3 Ascosphaera_duoformis_U68316, 4 Ascosphaera_acerosa_U68321, 5 Ascosphaera_xerophila_U68326, 6 Ascosphaera_colubrina_U68320, 7 Ascosphaera_major_U68315, 8 Ascosphaera_celerrima_U68325, 9 Ascosphaera_larvis_U68330, 10 Ascosphaera_pollenicola_U68329, 11 Ascosphaera_flava_U68332, 12 Ascosphaera_variegata_U68319, 13 Ascosphaera_asterophora_U68322, 14 Ascosphaera_osmophila_U68317, 15 Ascosphaera_proliperda_U68318, 16 Ascosphaera_aggregata_U68323, 17 Ascosphaera_naganensis_U68327, 18 Ascosphaera_subcuticulata_U68331, 19 Ascosphaera_fusiformis_U68324, 20 Ascosphaera_solina_U68328, 21 'Ascosphaera apis ATCC_MYA4450_FJ172292', 22 'Ascosphaera apis ATCC_MYA4451_FJ172293', 23 Fungal_Culture_A1, 24 Fungal_Culture_A2, 25 'Ascosphaera apis USDAARSEF_7405', 26 Aspergillus_terreus_NIH2624; TREE con_50_majrule = [&R] (26:0.373011,((5:0.230944,(17:0.093573,(2:0.006627,3:0.004173)1.00:0.155705)0.74:0.045609)1.00:0.091309,(1:0.002382,21:0.002054,22:0.002393,23:0.003003,24:0.002101,25:0.010573)0.82:0.025092,(8:0.037191,(7:0.002542,9:0.008222,10:0.015705,11:0.025984,(6:0.002418,12:0.002435)1.00:0.007337)1.00:0.03407)0.99:0.022791,(19:0.082265,((4:0.053555,13:0.012896)1.00:0.123665,((14:0.073841,20:0.0393)0.54:0.015414,(15:0.087763,(16:0.004805,18:0.052078)1.00:0.056429)0.82:0.036584)0.93:0.083886)0.67:0.029391)0.86:0.038986):0.373011); TREE con_50_majrule = [&R] (26:0.746022,(((2:0.006627,3:0.004173):0.155705,17:0.093573):0.045609,5:0.230944):0.091309,(((6:0.002418,12:0.002435):0.007337,7:0.002542,9:0.008222,10:0.015705,11:0.025984):0.03407,8:0.037191):0.022791,(((4:0.053555,13:0.012896):0.123665,((14:0.073841,20:0.0393):0.015414,(15:0.087763,(16:0.004805,18:0.052078):0.056429):0.036584):0.083886):0.029391,19:0.082265):0.038986,(1:0.002382,21:0.002054,22:0.002393,23:0.003003,24:0.002101,25:0.010573):0.025092); END; BEGIN TREES; TITLE Ascosphaera_Maximum_Likelihood; LINK TAXA = Taxa1; TRANSLATE 1 Ascosphaera_apis_U68313, 2 Ascosphaera_atra_U68314, 3 Ascosphaera_duoformis_U68316, 4 Ascosphaera_acerosa_U68321, 5 Ascosphaera_xerophila_U68326, 6 Ascosphaera_colubrina_U68320, 7 Ascosphaera_major_U68315, 8 Ascosphaera_celerrima_U68325, 9 Ascosphaera_larvis_U68330, 10 Ascosphaera_pollenicola_U68329, 11 Ascosphaera_flava_U68332, 12 Ascosphaera_variegata_U68319, 13 Ascosphaera_asterophora_U68322, 14 Ascosphaera_osmophila_U68317, 15 Ascosphaera_proliperda_U68318, 16 Ascosphaera_aggregata_U68323, 17 Ascosphaera_naganensis_U68327, 18 Ascosphaera_subcuticulata_U68331, 19 Ascosphaera_fusiformis_U68324, 20 Ascosphaera_solina_U68328, 21 'Ascosphaera apis ATCC_MYA4450_FJ172292', 22 'Ascosphaera apis ATCC_MYA4451_FJ172293', 23 Fungal_Culture_A1, 24 Fungal_Culture_A2, 25 'Ascosphaera apis USDAARSEF_7405', 26 Aspergillus_terreus_NIH2624; TREE Imported_tree_1 = [&R] (26:0.365462720780042,(((5:0.20758301643698018,(17:0.09191026928770164,(2:0.004870589891475801,3:1.11893140215593E-6)100:0.13533225734352167)58:0.033849074365009044)82:0.07428272456523825,(19:0.07313001653748837,((4:0.05060573577341738,13:0.004665924096149868)100:0.10750496000764871,((14:0.0657602243375944,20:0.03399175375195313)49:0.007469739548630473,(15:0.07924757708589879,(16:1.11893140215593E-6,18:0.04812277173024695)96:0.051893825292926465)55:0.030643482818287167)74:0.07603611897652668)40:0.02061683783628954)63:0.0254037845780994)26:1.11893140215593E-6,((25:0.010324738980511994,(22:1.11893140215593E-6,(1:1.11893140215593E-6,(24:1.11893140215593E-6,(21:1.11893140215593E-6,23:1.11893140215593E-6)80:1.11893140215593E-6):1.11893140215593E-6)65:1.11893140215593E-6)23:1.11893140215593E-6)62:0.02849364593701114,(8:0.03202942569700624,((9:0.004674412422788338,10:0.011624730449538184)45:1.11893140215593E-6,(11:0.021948044475084295,(7:1.11893140215593E-6,(6:1.11893140215593E-6,12:1.11893140215593E-6)93:0.0045654644148408535)54:1.11893140215593E-6)64:0.0022280876288152604)94:0.0296676781632168)72:0.019534910729145746)72:0.01876511080141174)33:0.365462720780042); END;